AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0978550


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978550 MtrunA17_Chr6g0457471 83.333 180 12 1 1 162 1 180 3.95e-108 305
Msa0978550 MtrunA17_Chr6g0457461 81.111 180 13 2 1 162 1 177 8.98e-104 294
Msa0978550 MtrunA17_Chr7g0215381 72.674 172 28 2 9 162 11 181 3.96e-89 258
Msa0978550 MtrunA17_Chr7g0215421 73.256 172 27 2 9 162 11 181 5.75e-89 257
Msa0978550 MtrunA17_Chr7g0215361 73.099 171 27 2 10 162 12 181 1.29e-88 256
Msa0978550 MtrunA17_Chr7g0215351 72.674 172 28 2 9 162 11 181 1.65e-88 256
Msa0978550 MtrunA17_Chr7g0215431 73.099 171 27 2 10 162 12 181 3.14e-88 255
Msa0978550 MtrunA17_Chr4g0072241 44.444 153 66 2 26 159 15 167 5.10e-46 148
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0978550 AT5G38410.1 66.480 179 38 2 2 162 4 178 4.65e-84 245
Msa0978550 AT1G67090.1 65.922 179 39 2 2 162 4 178 6.68e-84 244
Msa0978550 AT5G38430.1 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0978550 AT5G38430.2 66.480 179 38 2 2 162 4 178 6.83e-84 244
Msa0978550 AT5G38410.3 64.674 184 38 2 2 162 4 183 2.64e-83 243
Msa0978550 AT5G38420.1 65.363 179 40 2 2 162 4 178 1.97e-82 241
Msa0978550 AT5G38410.2 66.860 172 42 2 2 162 4 171 7.56e-82 239
Msa0978550 AT1G67090.2 68.132 91 25 1 2 92 4 90 2.07e-38 128

Find 55 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGTTGGTCTTCTTGGTAAC+TGG 0.200361 6_4:-14617995 None:intergenic
AATGTCATTGTTGGTCTTCT+TGG 0.259020 6_4:-14618002 None:intergenic
TACAAACAAAGTAGTAATAA+AGG 0.294686 6_4:-14619145 None:intergenic
GATACTATGACGGACGTTAC+TGG 0.345500 6_4:+14618933 Msa0978550:CDS
GATTCATTCATCAGAATCAT+TGG 0.353791 6_4:+14619040 Msa0978550:CDS
ATGATTCTGATGAATGAATC+TGG 0.373664 6_4:-14619037 None:intergenic
TCAAACTTCTTCTTGCCAAC+TGG 0.385159 6_4:-14618316 None:intergenic
TGATTCTTCTCAAGTGTTGA+AGG 0.390177 6_4:+14618988 Msa0978550:CDS
CACCGTTAGCCGCGCCTCCT+TGG 0.395494 6_4:+14617919 Msa0978550:CDS
AGGATTTGAGACCGGTGAAC+GGG 0.405433 6_4:-14617961 None:intergenic
ATGTGGAGGTTGCCTTTGTT+CGG 0.417201 6_4:+14618959 Msa0978550:CDS
ACCCCTCACTGAGGAACAAT+TGG 0.420148 6_4:+14618357 Msa0978550:CDS
AACTTAGTTGCCCCGTTCAC+CGG 0.452141 6_4:+14617950 Msa0978550:CDS
AGCCAATTGTTCCTCAGTGA+GGG 0.454137 6_4:-14618359 None:intergenic
ACCGGTCTCAAATCCTCAGC+TGG 0.471949 6_4:+14617968 Msa0978550:CDS
ACAAACAAAGTAGTAATAAA+GGG 0.474757 6_4:-14619144 None:intergenic
TGTTGGTCTTCTTGGTAACT+GGG 0.488557 6_4:-14617994 None:intergenic
CGTGAGAACCACCGTTCACC+AGG 0.497088 6_4:+14618911 Msa0978550:CDS
TCCACCATTGCTTGCAATGG+AGG 0.500934 6_4:-14618026 None:intergenic
TGCCAAGGAGGCGCGGCTAA+CGG 0.502121 6_4:-14617921 None:intergenic
TCTTCCACCATTGCTTGCAA+TGG 0.515588 6_4:-14618029 None:intergenic
GGTGAACGGGGCAACTAAGT+TGG 0.527020 6_4:-14617948 None:intergenic
AACTTCTTCTTGCCAACTGG+TGG 0.532490 6_4:-14618313 None:intergenic
AATGGAGGTAATGTCATTGT+TGG 0.536427 6_4:-14618011 None:intergenic
CACTGAGGAACAATTGGCTA+AGG 0.537360 6_4:+14618363 Msa0978550:CDS
TAGCCAATTGTTCCTCAGTG+AGG 0.553733 6_4:-14618360 None:intergenic
TAACGTCCGTCATAGTATCC+TGG 0.560465 6_4:-14618929 None:intergenic
CTGGTGAACGGTGGTTCTCA+CGG 0.562589 6_4:-14618910 None:intergenic
AACTAAGTTGGCTTGTGCCA+AGG 0.563759 6_4:-14617936 None:intergenic
ACCTCCATTGCAAGCAATGG+TGG 0.570031 6_4:+14618025 Msa0978550:CDS
GTTCCTCAGTGAGGGGTGGA+AGG 0.571475 6_4:-14618351 None:intergenic
ACCAGCTGAGGATTTGAGAC+CGG 0.573385 6_4:-14617969 None:intergenic
GCCAATTGTTCCTCAGTGAG+GGG 0.576725 6_4:-14618358 None:intergenic
GAGGATTTGAGACCGGTGAA+CGG 0.588658 6_4:-14617962 None:intergenic
GAATCAGTGGCTCCGAACAA+AGG 0.592010 6_4:-14618971 None:intergenic
GGGAAATATAGTTCTTACAA+TGG 0.592681 6_4:-14619173 None:intergenic
TGGCTTGTGCCAAGGAGGCG+CGG 0.597288 6_4:-14617928 None:intergenic
TTATAGGTGTGGCCACCAGT+TGG 0.602882 6_4:+14618301 Msa0978550:intron
CAAGGAGGCGCGGCTAACGG+TGG 0.605314 6_4:-14617918 None:intergenic
ATTACCTCCATTGCAAGCAA+TGG 0.615000 6_4:+14618022 Msa0978550:CDS
GCGGCTAACGGTGGTGACTG+CGG 0.617493 6_4:-14617909 None:intergenic
TGATTCTGATGAATGAATCT+GGG 0.619551 6_4:-14619036 None:intergenic
TGGAAGAGTGAACTGTATGC+AGG 0.631476 6_4:+14618045 Msa0978550:CDS
CAACACTTGAGAAGAATCAG+TGG 0.638041 6_4:-14618984 None:intergenic
CGTCATAGTATCCTGGTGAA+CGG 0.638410 6_4:-14618922 None:intergenic
AATTGTTCCTCAGTGAGGGG+TGG 0.640814 6_4:-14618355 None:intergenic
GGATTTGAGACCGGTGAACG+GGG 0.645575 6_4:-14617960 None:intergenic
CATAGTATCCTGGTGAACGG+TGG 0.657211 6_4:-14618919 None:intergenic
AACAAAGTAGTAATAAAGGG+TGG 0.668091 6_4:-14619141 None:intergenic
GGTAACTGGGAAACCAGCTG+AGG 0.671464 6_4:-14617981 None:intergenic
TAAGTTGGCTTGTGCCAAGG+AGG 0.671585 6_4:-14617933 None:intergenic
GACGTTACTGGACAATGTGG+AGG 0.672886 6_4:+14618945 Msa0978550:CDS
CGTTCACCAGGATACTATGA+CGG 0.703631 6_4:+14618923 Msa0978550:CDS
ACGGACGTTACTGGACAATG+TGG 0.708236 6_4:+14618942 Msa0978550:CDS
ATACCTTCCACCCCTCACTG+AGG 0.719780 6_4:+14618348 Msa0978550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_4:14618107-14618126 None:intergenic 10.0%
!! AATTAATTGAATTTCATATT+AGG + chr6_4:14618113-14618132 Msa0978550:intron 10.0%
!! ATTACAAATAAAATTTAGTA+GGG - chr6_4:14618279-14618298 None:intergenic 10.0%
!! TATTACAAATAAAATTTAGT+AGG - chr6_4:14618280-14618299 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_4:14618634-14618653 None:intergenic 10.0%
!!! AAATTCAATTAATTTTTGAT+GGG - chr6_4:14618107-14618126 None:intergenic 10.0%
!! AATTAATTGAATTTCATATT+AGG + chr6_4:14618113-14618132 Msa0978550:intron 10.0%
!! ATTACAAATAAAATTTAGTA+GGG - chr6_4:14618279-14618298 None:intergenic 10.0%
!! TATTACAAATAAAATTTAGT+AGG - chr6_4:14618280-14618299 None:intergenic 10.0%
!!! ATATGTAAAATATTTTTACA+CGG - chr6_4:14618634-14618653 None:intergenic 10.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_4:14618106-14618125 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_4:14618108-14618127 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_4:14618154-14618173 None:intergenic 15.0%
!! AAGTTAAAAAGGAAAAAAAA+AGG - chr6_4:14618467-14618486 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_4:14618563-14618582 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_4:14618672-14618691 None:intergenic 15.0%
!!! AATTCAATTAATTTTTGATG+GGG - chr6_4:14618106-14618125 None:intergenic 15.0%
!!! GAAATTCAATTAATTTTTGA+TGG - chr6_4:14618108-14618127 None:intergenic 15.0%
!! TAATAATTTAAGTAACCTTA+AGG - chr6_4:14618154-14618173 None:intergenic 15.0%
!! AAGTTAAAAAGGAAAAAAAA+AGG - chr6_4:14618467-14618486 None:intergenic 15.0%
!! AATAAATATATACAGTAAAG+TGG - chr6_4:14618563-14618582 None:intergenic 15.0%
!! AAACACTATAAAAATATCAT+AGG - chr6_4:14618672-14618691 None:intergenic 15.0%
!! TTATATATCTATGTACCTTA+AGG + chr6_4:14618136-14618155 Msa0978550:intron 20.0%
!! TTAATTAATCATGTCAACTT+TGG - chr6_4:14618237-14618256 None:intergenic 20.0%
!! ATTTGTAATATTTATAGGTG+TGG + chr6_4:14618290-14618309 Msa0978550:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_4:14618478-14618497 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+TGG + chr6_4:14618674-14618693 Msa0978550:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_4:14618878-14618897 Msa0978550:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_4:14619115-14619134 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_4:14619147-14619166 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_4:14619148-14619167 None:intergenic 20.0%
!! TTATATATCTATGTACCTTA+AGG + chr6_4:14618136-14618155 Msa0978550:intron 20.0%
!! TTAATTAATCATGTCAACTT+TGG - chr6_4:14618237-14618256 None:intergenic 20.0%
!! ATTTGTAATATTTATAGGTG+TGG + chr6_4:14618290-14618309 Msa0978550:intron 20.0%
!! ATTAAACTCGTAAGTTAAAA+AGG - chr6_4:14618478-14618497 None:intergenic 20.0%
!!! GATATTTTTATAGTGTTTAG+TGG + chr6_4:14618674-14618693 Msa0978550:intron 20.0%
!!! ATTTGTTGTGTTATATAGAA+AGG + chr6_4:14618878-14618897 Msa0978550:intron 20.0%
!!! TATCAAACTTAGTAGTTTTT+TGG - chr6_4:14619115-14619134 None:intergenic 20.0%
!! ACAAACAAAGTAGTAATAAA+GGG - chr6_4:14619147-14619166 None:intergenic 20.0%
!! TACAAACAAAGTAGTAATAA+AGG - chr6_4:14619148-14619167 None:intergenic 20.0%
!! AAAAATATGGACTATGGATT+AGG - chr6_4:14618078-14618097 None:intergenic 25.0%
! AGAATGCAACAAAAAGAAAT+TGG + chr6_4:14618191-14618210 Msa0978550:intron 25.0%
! TTATAGTGTTTAGTGGAATT+TGG + chr6_4:14618681-14618700 Msa0978550:intron 25.0%
!! AAAAATATGGACTATGGATT+AGG - chr6_4:14618078-14618097 None:intergenic 25.0%
! AGAATGCAACAAAAAGAAAT+TGG + chr6_4:14618191-14618210 Msa0978550:intron 25.0%
! TTATAGTGTTTAGTGGAATT+TGG + chr6_4:14618681-14618700 Msa0978550:intron 25.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_4:14618503-14618522 None:intergenic 30.0%
GCTTCATGATAAAATCTGAT+TGG - chr6_4:14618541-14618560 None:intergenic 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_4:14619039-14619058 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_4:14619040-14619059 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_4:14619040-14619059 Msa0978550:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_4:14619144-14619163 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_4:14619176-14619195 None:intergenic 30.0%
! AGTTTTTCATTGTCAGTGTA+TGG - chr6_4:14618503-14618522 None:intergenic 30.0%
GCTTCATGATAAAATCTGAT+TGG - chr6_4:14618541-14618560 None:intergenic 30.0%
TGATTCTGATGAATGAATCT+GGG - chr6_4:14619039-14619058 None:intergenic 30.0%
ATGATTCTGATGAATGAATC+TGG - chr6_4:14619040-14619059 None:intergenic 30.0%
GATTCATTCATCAGAATCAT+TGG + chr6_4:14619040-14619059 Msa0978550:CDS 30.0%
AACAAAGTAGTAATAAAGGG+TGG - chr6_4:14619144-14619163 None:intergenic 30.0%
GGGAAATATAGTTCTTACAA+TGG - chr6_4:14619176-14619195 None:intergenic 30.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_4:14618005-14618024 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_4:14618014-14618033 None:intergenic 35.0%
! GTGTGCAAAAATATGGACTA+TGG - chr6_4:14618084-14618103 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_4:14618383-14618402 Msa0978550:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_4:14618387-14618406 Msa0978550:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_4:14618388-14618407 Msa0978550:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_4:14618421-14618440 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_4:14618420-14618439 Msa0978550:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_4:14618747-14618766 Msa0978550:intron 35.0%
TTCCAAGTGATGAATTTCGT+AGG + chr6_4:14618843-14618862 Msa0978550:intron 35.0%
TCCAAGTGATGAATTTCGTA+GGG + chr6_4:14618844-14618863 Msa0978550:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_4:14618988-14619007 Msa0978550:CDS 35.0%
!! AATGTCATTGTTGGTCTTCT+TGG - chr6_4:14618005-14618024 None:intergenic 35.0%
AATGGAGGTAATGTCATTGT+TGG - chr6_4:14618014-14618033 None:intergenic 35.0%
! GTGTGCAAAAATATGGACTA+TGG - chr6_4:14618084-14618103 None:intergenic 35.0%
AGGAAGTAGAATACCTTATC+AGG + chr6_4:14618383-14618402 Msa0978550:intron 35.0%
AGTAGAATACCTTATCAGGA+AGG + chr6_4:14618387-14618406 Msa0978550:intron 35.0%
GTAGAATACCTTATCAGGAA+GGG + chr6_4:14618388-14618407 Msa0978550:intron 35.0%
TCAAGCTCAAATTCCAAACA+AGG - chr6_4:14618421-14618440 None:intergenic 35.0%
! TTGTTTGGAATTTGAGCTTG+AGG + chr6_4:14618420-14618439 Msa0978550:intron 35.0%
CAGGTTGTTGGAATTTGATA+TGG + chr6_4:14618747-14618766 Msa0978550:intron 35.0%
TTCCAAGTGATGAATTTCGT+AGG + chr6_4:14618843-14618862 Msa0978550:intron 35.0%
TCCAAGTGATGAATTTCGTA+GGG + chr6_4:14618844-14618863 Msa0978550:intron 35.0%
!! TGATTCTTCTCAAGTGTTGA+AGG + chr6_4:14618988-14619007 Msa0978550:CDS 35.0%
!! TGTTGGTCTTCTTGGTAACT+GGG - chr6_4:14617997-14618016 None:intergenic 40.0%
!! TTGTTGGTCTTCTTGGTAAC+TGG - chr6_4:14617998-14618017 None:intergenic 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_4:14618022-14618041 Msa0978550:CDS 40.0%
TGATGGGGTGTGCAAAAATA+TGG - chr6_4:14618091-14618110 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_4:14618319-14618338 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_4:14618392-14618411 Msa0978550:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_4:14618696-14618715 Msa0978550:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_4:14618720-14618739 Msa0978550:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_4:14618818-14618837 None:intergenic 40.0%
CATCACTTGGAACACGAATT+CGG - chr6_4:14618835-14618854 None:intergenic 40.0%
ACCCTACGAAATTCATCACT+TGG - chr6_4:14618848-14618867 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_4:14618987-14619006 None:intergenic 40.0%
GCAGAAGAAATCAAAGCCAT+TGG - chr6_4:14617890-14617909 None:intergenic 40.0%
!! TGTTGGTCTTCTTGGTAACT+GGG - chr6_4:14617997-14618016 None:intergenic 40.0%
!! TTGTTGGTCTTCTTGGTAAC+TGG - chr6_4:14617998-14618017 None:intergenic 40.0%
ATTACCTCCATTGCAAGCAA+TGG + chr6_4:14618022-14618041 Msa0978550:CDS 40.0%
TGATGGGGTGTGCAAAAATA+TGG - chr6_4:14618091-14618110 None:intergenic 40.0%
TCAAACTTCTTCTTGCCAAC+TGG - chr6_4:14618319-14618338 None:intergenic 40.0%
AATACCTTATCAGGAAGGGA+TGG + chr6_4:14618392-14618411 Msa0978550:intron 40.0%
GAATTTGGATTACCTGCAGT+CGG + chr6_4:14618696-14618715 Msa0978550:intron 40.0%
AATCCTCTCATTCACTCAGT+CGG + chr6_4:14618720-14618739 Msa0978550:intron 40.0%
! ATTCGGATTGTCTGAAGTCA+AGG - chr6_4:14618818-14618837 None:intergenic 40.0%
CATCACTTGGAACACGAATT+CGG - chr6_4:14618835-14618854 None:intergenic 40.0%
ACCCTACGAAATTCATCACT+TGG - chr6_4:14618848-14618867 None:intergenic 40.0%
CAACACTTGAGAAGAATCAG+TGG - chr6_4:14618987-14619006 None:intergenic 40.0%
!! AACTAAGTTGGCTTGTGCCA+AGG - chr6_4:14617939-14617958 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_4:14618032-14618051 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_4:14618045-14618064 Msa0978550:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_4:14618316-14618335 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_4:14618362-14618381 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_4:14618363-14618382 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_4:14618363-14618382 Msa0978550:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_4:14618399-14618418 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_4:14618405-14618424 Msa0978550:intron 45.0%
!! ATGTGTCGACTCTGTGAATG+TGG + chr6_4:14618786-14618805 Msa0978550:intron 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_4:14618925-14618944 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_4:14618923-14618942 Msa0978550:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_4:14618932-14618951 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_4:14618933-14618952 Msa0978550:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_4:14618959-14618978 Msa0978550:CDS 45.0%
!! AACTAAGTTGGCTTGTGCCA+AGG - chr6_4:14617939-14617958 None:intergenic 45.0%
TCTTCCACCATTGCTTGCAA+TGG - chr6_4:14618032-14618051 None:intergenic 45.0%
TGGAAGAGTGAACTGTATGC+AGG + chr6_4:14618045-14618064 Msa0978550:CDS 45.0%
AACTTCTTCTTGCCAACTGG+TGG - chr6_4:14618316-14618335 None:intergenic 45.0%
AGCCAATTGTTCCTCAGTGA+GGG - chr6_4:14618362-14618381 None:intergenic 45.0%
TAGCCAATTGTTCCTCAGTG+AGG - chr6_4:14618363-14618382 None:intergenic 45.0%
CACTGAGGAACAATTGGCTA+AGG + chr6_4:14618363-14618382 Msa0978550:CDS 45.0%
GAATCCATCCCTTCCTGATA+AGG - chr6_4:14618399-14618418 None:intergenic 45.0%
! GAAGGGATGGATTCCTTGTT+TGG + chr6_4:14618405-14618424 Msa0978550:intron 45.0%
!! ATGTGTCGACTCTGTGAATG+TGG + chr6_4:14618786-14618805 Msa0978550:intron 45.0%
CGTCATAGTATCCTGGTGAA+CGG - chr6_4:14618925-14618944 None:intergenic 45.0%
CGTTCACCAGGATACTATGA+CGG + chr6_4:14618923-14618942 Msa0978550:CDS 45.0%
TAACGTCCGTCATAGTATCC+TGG - chr6_4:14618932-14618951 None:intergenic 45.0%
!! GATACTATGACGGACGTTAC+TGG + chr6_4:14618933-14618952 Msa0978550:CDS 45.0%
ATGTGGAGGTTGCCTTTGTT+CGG + chr6_4:14618959-14618978 Msa0978550:CDS 45.0%
!!! ATTTTATTTGTAATATTTAT+AGG + chr6_4:14618285-14618304 Msa0978550:intron 5.0%
!!! ATTTTATTTGTAATATTTAT+AGG + chr6_4:14618285-14618304 Msa0978550:intron 5.0%
!! TAAGTTGGCTTGTGCCAAGG+AGG - chr6_4:14617936-14617955 None:intergenic 50.0%
AACTTAGTTGCCCCGTTCAC+CGG + chr6_4:14617950-14617969 Msa0978550:CDS 50.0%
! AGGATTTGAGACCGGTGAAC+GGG - chr6_4:14617964-14617983 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+CGG - chr6_4:14617965-14617984 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_4:14617972-14617991 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_4:14618025-14618044 Msa0978550:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_4:14618029-14618048 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_4:14618301-14618320 Msa0978550:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_4:14618358-14618377 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_4:14618357-14618376 Msa0978550:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_4:14618361-14618380 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_4:14618711-14618730 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_4:14618726-14618745 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_4:14618728-14618747 Msa0978550:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_4:14618735-14618754 Msa0978550:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_4:14618922-14618941 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_4:14618942-14618961 Msa0978550:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_4:14618945-14618964 Msa0978550:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_4:14618974-14618993 None:intergenic 50.0%
!! TAAGTTGGCTTGTGCCAAGG+AGG - chr6_4:14617936-14617955 None:intergenic 50.0%
AACTTAGTTGCCCCGTTCAC+CGG + chr6_4:14617950-14617969 Msa0978550:CDS 50.0%
! AGGATTTGAGACCGGTGAAC+GGG - chr6_4:14617964-14617983 None:intergenic 50.0%
! GAGGATTTGAGACCGGTGAA+CGG - chr6_4:14617965-14617984 None:intergenic 50.0%
! ACCAGCTGAGGATTTGAGAC+CGG - chr6_4:14617972-14617991 None:intergenic 50.0%
ACCTCCATTGCAAGCAATGG+TGG + chr6_4:14618025-14618044 Msa0978550:CDS 50.0%
TCCACCATTGCTTGCAATGG+AGG - chr6_4:14618029-14618048 None:intergenic 50.0%
TTATAGGTGTGGCCACCAGT+TGG + chr6_4:14618301-14618320 Msa0978550:intron 50.0%
AATTGTTCCTCAGTGAGGGG+TGG - chr6_4:14618358-14618377 None:intergenic 50.0%
ACCCCTCACTGAGGAACAAT+TGG + chr6_4:14618357-14618376 Msa0978550:CDS 50.0%
GCCAATTGTTCCTCAGTGAG+GGG - chr6_4:14618361-14618380 None:intergenic 50.0%
! ATGAGAGGATTACCGACTGC+AGG - chr6_4:14618711-14618730 None:intergenic 50.0%
!! GTACCGACTGAGTGAATGAG+AGG - chr6_4:14618726-14618745 None:intergenic 50.0%
CATTCACTCAGTCGGTACAC+AGG + chr6_4:14618728-14618747 Msa0978550:intron 50.0%
TCAGTCGGTACACAGGTTGT+TGG + chr6_4:14618735-14618754 Msa0978550:intron 50.0%
CATAGTATCCTGGTGAACGG+TGG - chr6_4:14618922-14618941 None:intergenic 50.0%
ACGGACGTTACTGGACAATG+TGG + chr6_4:14618942-14618961 Msa0978550:CDS 50.0%
GACGTTACTGGACAATGTGG+AGG + chr6_4:14618945-14618964 Msa0978550:CDS 50.0%
GAATCAGTGGCTCCGAACAA+AGG - chr6_4:14618974-14618993 None:intergenic 50.0%
GGTGAACGGGGCAACTAAGT+TGG - chr6_4:14617951-14617970 None:intergenic 55.0%
! GGATTTGAGACCGGTGAACG+GGG - chr6_4:14617963-14617982 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_4:14617968-14617987 Msa0978550:CDS 55.0%
GGTAACTGGGAAACCAGCTG+AGG - chr6_4:14617984-14618003 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_4:14618348-14618367 Msa0978550:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_4:14618913-14618932 None:intergenic 55.0%
GGTGAACGGGGCAACTAAGT+TGG - chr6_4:14617951-14617970 None:intergenic 55.0%
! GGATTTGAGACCGGTGAACG+GGG - chr6_4:14617963-14617982 None:intergenic 55.0%
ACCGGTCTCAAATCCTCAGC+TGG + chr6_4:14617968-14617987 Msa0978550:CDS 55.0%
GGTAACTGGGAAACCAGCTG+AGG - chr6_4:14617984-14618003 None:intergenic 55.0%
ATACCTTCCACCCCTCACTG+AGG + chr6_4:14618348-14618367 Msa0978550:CDS 55.0%
CTGGTGAACGGTGGTTCTCA+CGG - chr6_4:14618913-14618932 None:intergenic 55.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_4:14618354-14618373 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_4:14618911-14618930 Msa0978550:CDS 60.0%
GTTCCTCAGTGAGGGGTGGA+AGG - chr6_4:14618354-14618373 None:intergenic 60.0%
CGTGAGAACCACCGTTCACC+AGG + chr6_4:14618911-14618930 Msa0978550:CDS 60.0%
GCGGCTAACGGTGGTGACTG+CGG - chr6_4:14617912-14617931 None:intergenic 65.0%
! TGCCAAGGAGGCGCGGCTAA+CGG - chr6_4:14617924-14617943 None:intergenic 65.0%
! TGGCTTGTGCCAAGGAGGCG+CGG - chr6_4:14617931-14617950 None:intergenic 65.0%
GCGGCTAACGGTGGTGACTG+CGG - chr6_4:14617912-14617931 None:intergenic 65.0%
! TGCCAAGGAGGCGCGGCTAA+CGG - chr6_4:14617924-14617943 None:intergenic 65.0%
! TGGCTTGTGCCAAGGAGGCG+CGG - chr6_4:14617931-14617950 None:intergenic 65.0%
! CAAGGAGGCGCGGCTAACGG+TGG - chr6_4:14617921-14617940 None:intergenic 70.0%
CACCGTTAGCCGCGCCTCCT+TGG + chr6_4:14617919-14617938 Msa0978550:CDS 70.0%
! CAAGGAGGCGCGGCTAACGG+TGG - chr6_4:14617921-14617940 None:intergenic 70.0%
CACCGTTAGCCGCGCCTCCT+TGG + chr6_4:14617919-14617938 Msa0978550:CDS 70.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 14617890 14619196 14617890 ID=Msa0978550;Name=Msa0978550
chr6_4 mRNA 14617890 14619196 14617890 ID=Msa0978550-mRNA-1;Parent=Msa0978550;Name=Msa0978550-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0.5|0.33|1|1|1|3|70|162
chr6_4 exon 14617890 14618066 14617890 ID=Msa0978550-mRNA-1:exon:4786;Parent=Msa0978550-mRNA-1
chr6_4 exon 14618307 14618387 14618307 ID=Msa0978550-mRNA-1:exon:4787;Parent=Msa0978550-mRNA-1
chr6_4 exon 14618896 14619196 14618896 ID=Msa0978550-mRNA-1:exon:4788;Parent=Msa0978550-mRNA-1
chr6_4 CDS 14617890 14618066 14617890 ID=Msa0978550-mRNA-1:cds;Parent=Msa0978550-mRNA-1
chr6_4 CDS 14618307 14618387 14618307 ID=Msa0978550-mRNA-1:cds;Parent=Msa0978550-mRNA-1
chr6_4 CDS 14618896 14619126 14618896 ID=Msa0978550-mRNA-1:cds;Parent=Msa0978550-mRNA-1
chr6_4 three_prime_UTR 14619127 14619196 14619127 ID=Msa0978550-mRNA-1:three_prime_utr;Parent=Msa0978550-mRNA-1
Gene Sequence

>Msa0978550

ATGGCTTTGATTTCTTCTGCCGCAGTCACCACCGTTAGCCGCGCCTCCTTGGCACAAGCCAACTTAGTTGCCCCGTTCACCGGTCTCAAATCCTCAGCTGGTTTCCCAGTTACCAAGAAGACCAACAATGACATTACCTCCATTGCAAGCAATGGTGGAAGAGTGAACTGTATGCAGGTGTGGCCACCAGTTGGCAAGAAGAAGTTTGAGACACTTTCATACCTTCCACCCCTCACTGAGGAACAATTGGCTAAGGAAAAAGGATTTGTCTACCGTGAGAACCACCGTTCACCAGGATACTATGACGGACGTTACTGGACAATGTGGAGGTTGCCTTTGTTCGGAGCCACTGATTCTTCTCAAGTGTTGAAGGAGCTTGCTGACTGTAAAGCTGAATACCCAGATTCATTCATCAGAATCATTGGATTTGACAATGTTCGTCAAGTGCAGTGCATTAGTTTCATTGCACACACACCAAAAAACTACTAA

Protein sequence

>Msa0978550

MALISSAAVTTVSRASLAQANLVAPFTGLKSSAGFPVTKKTNNDITSIASNGGRVNCMQVWPPVGKKKFETLSYLPPLTEEQLAKEKGFVYRENHRSPGYYDGRYWTMWRLPLFGATDSSQVLKELADCKAEYPDSFIRIIGFDNVRQVQCISFIAHTPKNY*