AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0429990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429990 MtrunA17_Chr3g0133901 98.889 180 2 0 1 180 1 180 1.20e-130 367
Msa0429990 MtrunA17_Chr8g0345631 55.738 122 52 2 51 171 55 175 3.31e-43 144
Msa0429990 MtrunA17_Chr2g0301081 59.130 115 46 1 57 171 61 174 4.38e-41 139
Msa0429990 MtrunA17_Chr3g0092091 50.820 122 59 1 57 178 52 172 2.01e-38 132
Msa0429990 MtrunA17_Chr2g0279001 50.794 126 48 4 58 175 57 176 5.00e-33 118
Msa0429990 MtrunA17_Chr5g0448421 36.970 165 82 7 27 175 29 187 1.54e-23 94.0
Msa0429990 MtrunA17_Chr5g0448411 37.086 151 76 6 41 175 38 185 1.13e-22 91.7
Msa0429990 MtrunA17_Chr6g0462031 36.029 136 73 3 37 165 32 160 1.98e-20 85.1
Msa0429990 MtrunA17_Chr4g0051941 37.500 112 55 3 66 162 65 176 1.63e-15 72.0
Msa0429990 MtrunA17_Chr6g0453151 37.500 112 55 3 66 162 131 242 5.68e-15 71.2
Msa0429990 MtrunA17_Chr6g0453141 37.500 112 55 3 66 162 64 175 7.95e-15 70.5
Msa0429990 MtrunA17_Chr1g0157481 41.237 97 52 2 49 140 103 199 8.91e-15 70.9
Msa0429990 MtrunA17_Chr6g0453181 37.500 112 55 3 66 162 64 175 1.15e-14 69.7
Msa0429990 MtrunA17_Chr5g0447531 37.383 107 61 2 68 168 66 172 1.46e-14 69.7
Msa0429990 MtrunA17_Chr6g0453161 37.500 112 55 3 66 162 331 442 2.45e-14 70.1
Msa0429990 MtrunA17_Chr6g0453161 37.500 112 55 3 66 162 66 177 2.54e-14 70.1
Msa0429990 MtrunA17_Chr6g0476641 43.056 72 39 1 68 137 91 162 7.30e-14 67.8
Msa0429990 MtrunA17_Chr2g0318521 42.254 71 39 1 68 136 63 133 9.00e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0429990 AT1G45474.2 73.759 141 31 1 39 179 33 167 8.07e-72 218
Msa0429990 AT1G45474.1 73.759 141 31 1 39 179 33 167 8.07e-72 218
Msa0429990 AT3G61470.1 51.938 129 61 1 50 178 44 171 1.01e-41 140
Msa0429990 AT1G19150.1 53.279 122 56 1 57 178 64 184 5.55e-41 139
Msa0429990 AT3G47470.1 40.964 166 89 2 21 178 9 173 1.32e-37 130
Msa0429990 AT1G15820.1 50.000 132 52 4 52 175 48 173 2.99e-33 119
Msa0429990 AT1G61520.3 39.865 148 66 7 44 175 43 183 9.15e-24 94.7
Msa0429990 AT1G61520.1 39.865 148 66 7 44 175 43 183 9.15e-24 94.7
Msa0429990 AT3G54890.4 40.179 112 60 2 61 165 48 159 1.34e-19 82.4
Msa0429990 AT3G54890.1 40.179 112 60 2 61 165 48 159 2.46e-19 82.4
Msa0429990 AT3G54890.3 61.667 60 23 0 61 120 48 107 3.57e-19 80.1
Msa0429990 AT3G54890.2 61.667 60 23 0 61 120 48 107 1.12e-18 80.1
Msa0429990 AT1G61520.2 40.678 118 51 6 74 175 14 128 4.57e-18 78.6
Msa0429990 AT2G34420.1 37.500 112 55 3 66 162 63 174 3.12e-15 71.6
Msa0429990 AT2G34430.1 37.500 112 55 3 66 162 64 175 3.25e-15 71.6
Msa0429990 AT4G10340.1 44.444 72 38 1 68 137 82 153 2.01e-14 69.7
Msa0429990 AT2G05100.2 30.058 173 90 6 21 162 3 175 2.06e-14 70.1
Msa0429990 AT2G05100.1 30.058 173 90 6 21 162 3 175 2.25e-14 69.3
Msa0429990 AT2G05070.1 30.058 173 90 6 21 162 3 175 3.14e-14 68.9
Msa0429990 AT1G29920.1 36.607 112 56 3 66 162 65 176 3.41e-14 68.9
Msa0429990 AT1G29910.1 36.607 112 56 3 66 162 65 176 3.41e-14 68.9
Msa0429990 AT1G29930.1 36.607 112 56 3 66 162 65 176 3.45e-14 68.9
Msa0429990 AT3G27690.1 30.769 182 99 6 2 162 1 176 6.06e-14 68.2
Msa0429990 AT3G27690.2 30.769 182 99 6 2 162 33 208 7.32e-14 68.6
Msa0429990 AT1G76570.1 33.594 128 65 4 56 163 109 236 4.72e-13 66.2

Find 58 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAGTCTGCCTGGAGATTT+TGG 0.083031 3_2:-81560102 Msa0429990:intron
ACATACCACTTTAAGCTTTC+AGG 0.257681 3_2:+81560051 None:intergenic
CTTCGCGTCGCAGGAGTTAA+TGG 0.271659 3_2:-81559645 Msa0429990:CDS
CTTTGCAATGCTTGGAGTCT+TGG 0.296257 3_2:-81560004 Msa0429990:CDS
CGTTGTTCAACTACTCTTGA+TGG 0.331931 3_2:-81559559 Msa0429990:CDS
TGGCTCAGGCCTGCTGCTGC+AGG 0.332089 3_2:-81560323 Msa0429990:CDS
GAGTTAATGGCATACCAATT+TGG 0.351396 3_2:-81559632 Msa0429990:CDS
TTAAAGAATGTTGCTGGAAA+TGG 0.353609 3_2:+81560390 None:intergenic
AGGCCTGCTGCTGCAGGAAC+GGG 0.357983 3_2:-81560317 Msa0429990:CDS
CATTCTCGCTTTGCAATGCT+TGG 0.365225 3_2:-81560012 Msa0429990:CDS
CTAATTATCCGCTCCTATCC+CGG 0.370042 3_2:+81560451 None:intergenic
CCCTCTTTAGCTTGAGATCC+AGG 0.372198 3_2:+81559394 None:intergenic
GCACCAGCTTCAAACCAAAT+TGG 0.375590 3_2:+81559618 None:intergenic
TTTGCAATGCTTGGAGTCTT+GGG 0.379571 3_2:-81560003 Msa0429990:CDS
CAGGCCTGCTGCTGCAGGAA+CGG 0.383245 3_2:-81560318 Msa0429990:CDS
CAGTGGTGTCCTGCTGTTGA+AGG 0.408562 3_2:+81560344 None:intergenic
TTAATCAACAGCAATGTCAT+TGG 0.423067 3_2:-81560371 Msa0429990:CDS
CAGCAGCAGGCCTGAGCCAG+TGG 0.431308 3_2:+81560327 None:intergenic
TGTTGATTAAAGAATGTTGC+TGG 0.432156 3_2:+81560384 None:intergenic
ACAGCGACCCACATGGCTCC+CGG 0.470053 3_2:-81560255 Msa0429990:CDS
CAGCAGGACACCACTGGCTC+AGG 0.472502 3_2:-81560337 Msa0429990:CDS
GTTGTTCAACTACTCTTGAT+GGG 0.474147 3_2:-81559558 Msa0429990:CDS
ACGTTCCATCAAGATAGGTC+GGG 0.483613 3_2:+81560222 None:intergenic
ACTCCCGTTCCTGCAGCAGC+AGG 0.483851 3_2:+81560314 None:intergenic
AACAATTGATTTGTAGTCCC+GGG 0.493837 3_2:-81560469 Msa0429990:five_prime_UTR
GGGTTCGACCCACTTGGACT+TGG 0.499119 3_2:-81560081 Msa0429990:CDS
TCCTGGATCTCAAGCTAAAG+AGG 0.502469 3_2:-81559395 Msa0429990:CDS
TTGATTTGTAGTCCCGGGAT+AGG 0.505378 3_2:-81560464 Msa0429990:five_prime_UTR
GTGGTATGTGCAAGCAGAGT+TGG 0.513095 3_2:-81560037 Msa0429990:CDS
ATCAAGTCCCGGGAGCCATG+TGG 0.514514 3_2:+81560247 None:intergenic
AAACAATTGATTTGTAGTCC+CGG 0.518317 3_2:-81560470 Msa0429990:five_prime_UTR
TGCTGAAACAAGAAGGTACA+TGG 0.520819 3_2:-81559428 Msa0429990:CDS
ATGCAGCTACTTCGCGTCGC+AGG 0.521060 3_2:-81559654 Msa0429990:intron
CAGCGACCCACATGGCTCCC+GGG 0.535164 3_2:-81560254 Msa0429990:CDS
TCAAGTCCCGGGAGCCATGT+GGG 0.535885 3_2:+81560248 None:intergenic
TAATTATCCGCTCCTATCCC+GGG 0.541171 3_2:+81560452 None:intergenic
TACGTTCCATCAAGATAGGT+CGG 0.542041 3_2:+81560221 None:intergenic
ATACCAATTTGGTTTGAAGC+TGG 0.542713 3_2:-81559621 Msa0429990:CDS
GGGTCGAACCCAAAATCTCC+AGG 0.547605 3_2:+81560093 None:intergenic
CGTTCCATCAAGATAGGTCG+GGG 0.549545 3_2:+81560223 None:intergenic
GGCTTACGTTCCATCAAGAT+AGG 0.552815 3_2:+81560217 None:intergenic
CTTCAACAGCAGGACACCAC+TGG 0.557036 3_2:-81560343 Msa0429990:CDS
ATTGGTAAACCTTCAACAGC+AGG 0.584446 3_2:-81560353 Msa0429990:CDS
CAGCACAACAGCGACCCACA+TGG 0.585644 3_2:-81560262 Msa0429990:CDS
CCTGGATCTCAAGCTAAAGA+GGG 0.589518 3_2:-81559394 Msa0429990:CDS
CGACCCACTTGGACTTGGAG+AGG 0.600286 3_2:-81560076 Msa0429990:CDS
AAATACGAGTTTGCCAACAC+AGG 0.611621 3_2:-81559591 Msa0429990:CDS
AGGATCCTGAAAGCTTAAAG+TGG 0.613738 3_2:-81560056 Msa0429990:CDS
TTGTTCAACTACTCTTGATG+GGG 0.618405 3_2:-81559557 Msa0429990:intron
AATACGAGTTTGCCAACACA+GGG 0.621022 3_2:-81559590 Msa0429990:CDS
ACAGGTATGCTGAAACAAGA+AGG 0.631208 3_2:-81559435 Msa0429990:intron
AACGACGAGTGTCCCTGTGT+TGG 0.634037 3_2:+81559578 None:intergenic
GCACAAATTTGTTTATAACG+TGG 0.647469 3_2:+81560287 None:intergenic
GGATCCTCTCCAAGTCCAAG+TGG 0.657850 3_2:+81560072 None:intergenic
TTGTAGTCCCGGGATAGGAG+CGG 0.657877 3_2:-81560459 Msa0429990:five_prime_UTR
AGCGGATAATTAGAGAACAA+TGG 0.668449 3_2:-81560441 Msa0429990:exon
GATCCTCTCCAAGTCCAAGT+GGG 0.674722 3_2:+81560073 None:intergenic
GTTCCATCAAGATAGGTCGG+GGG 0.742215 3_2:+81560224 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTTTGATTATATATATG+CGG + chr3_2:81560001-81560020 None:intergenic 15.0%
!!! ATAATCAAAGTTTTGAATAA+AGG - chr3_2:81560008-81560027 Msa0429990:CDS 15.0%
!!! TATGTTTTCTATATCATTAT+AGG - chr3_2:81560383-81560402 Msa0429990:CDS 15.0%
!! AAACTTTGATTATATATATG+CGG + chr3_2:81560001-81560020 None:intergenic 15.0%
!!! ATAATCAAAGTTTTGAATAA+AGG - chr3_2:81560008-81560027 Msa0429990:CDS 15.0%
!!! TATGTTTTCTATATCATTAT+AGG - chr3_2:81560383-81560402 Msa0429990:CDS 15.0%
!!! AACATAATGGTTTTATATTG+AGG - chr3_2:81560059-81560078 Msa0429990:CDS 20.0%
!!! GTATACATGATTTTAAATAG+CGG + chr3_2:81560160-81560179 None:intergenic 20.0%
!!! ATTTAAAATCATGTATACGA+TGG - chr3_2:81560162-81560181 Msa0429990:intron 20.0%
!!! AACATAATGGTTTTATATTG+AGG - chr3_2:81560059-81560078 Msa0429990:CDS 20.0%
!!! GTATACATGATTTTAAATAG+CGG + chr3_2:81560160-81560179 None:intergenic 20.0%
!!! ATTTAAAATCATGTATACGA+TGG - chr3_2:81560162-81560181 Msa0429990:intron 20.0%
!!! TGGCATTTTAAGATGAATTT+AGG + chr3_2:81559701-81559720 None:intergenic 25.0%
!! TTCAAGTTATAGTAACGTTA+AGG - chr3_2:81559735-81559754 Msa0429990:intron 25.0%
! TCAAGTTATAGTAACGTTAA+GGG - chr3_2:81559736-81559755 Msa0429990:intron 25.0%
! CTCAATATAAAAAACGTTAC+TGG + chr3_2:81559951-81559970 None:intergenic 25.0%
!!! TAATGGTTTTATATTGAGGT+TGG - chr3_2:81560063-81560082 Msa0429990:CDS 25.0%
!! CATAGATTGATAACAAGTTT+AGG + chr3_2:81560197-81560216 None:intergenic 25.0%
!!! TGGCATTTTAAGATGAATTT+AGG + chr3_2:81559701-81559720 None:intergenic 25.0%
!! TTCAAGTTATAGTAACGTTA+AGG - chr3_2:81559735-81559754 Msa0429990:intron 25.0%
! TCAAGTTATAGTAACGTTAA+GGG - chr3_2:81559736-81559755 Msa0429990:intron 25.0%
! CTCAATATAAAAAACGTTAC+TGG + chr3_2:81559951-81559970 None:intergenic 25.0%
!!! TAATGGTTTTATATTGAGGT+TGG - chr3_2:81560063-81560082 Msa0429990:CDS 25.0%
!! CATAGATTGATAACAAGTTT+AGG + chr3_2:81560197-81560216 None:intergenic 25.0%
!! AAACAATTGATTTGTAGTCC+CGG - chr3_2:81559398-81559417 Msa0429990:CDS 30.0%
TTAAAGAATGTTGCTGGAAA+TGG + chr3_2:81559481-81559500 None:intergenic 30.0%
! TGTTGATTAAAGAATGTTGC+TGG + chr3_2:81559487-81559506 None:intergenic 30.0%
TTAATCAACAGCAATGTCAT+TGG - chr3_2:81559497-81559516 Msa0429990:intron 30.0%
! GCACAAATTTGTTTATAACG+TGG + chr3_2:81559584-81559603 None:intergenic 30.0%
TGATCTAAACTGCAACATAA+TGG - chr3_2:81560046-81560065 Msa0429990:CDS 30.0%
! GTTTTATATTGAGGTTGGAT+TGG - chr3_2:81560068-81560087 Msa0429990:CDS 30.0%
TTATTAACTTTCACTTGCAC+AGG - chr3_2:81560415-81560434 Msa0429990:CDS 30.0%
!! AAACAATTGATTTGTAGTCC+CGG - chr3_2:81559398-81559417 Msa0429990:CDS 30.0%
TTAAAGAATGTTGCTGGAAA+TGG + chr3_2:81559481-81559500 None:intergenic 30.0%
! TGTTGATTAAAGAATGTTGC+TGG + chr3_2:81559487-81559506 None:intergenic 30.0%
TTAATCAACAGCAATGTCAT+TGG - chr3_2:81559497-81559516 Msa0429990:intron 30.0%
! GCACAAATTTGTTTATAACG+TGG + chr3_2:81559584-81559603 None:intergenic 30.0%
TGATCTAAACTGCAACATAA+TGG - chr3_2:81560046-81560065 Msa0429990:CDS 30.0%
! GTTTTATATTGAGGTTGGAT+TGG - chr3_2:81560068-81560087 Msa0429990:CDS 30.0%
TTATTAACTTTCACTTGCAC+AGG - chr3_2:81560415-81560434 Msa0429990:CDS 30.0%
!! AACAATTGATTTGTAGTCCC+GGG - chr3_2:81559399-81559418 Msa0429990:CDS 35.0%
AGCGGATAATTAGAGAACAA+TGG - chr3_2:81559427-81559446 Msa0429990:CDS 35.0%
ACATACCACTTTAAGCTTTC+AGG + chr3_2:81559820-81559839 None:intergenic 35.0%
GAGTTAATGGCATACCAATT+TGG - chr3_2:81560236-81560255 Msa0429990:CDS 35.0%
!! ATACCAATTTGGTTTGAAGC+TGG - chr3_2:81560247-81560266 Msa0429990:CDS 35.0%
GTTGTTCAACTACTCTTGAT+GGG - chr3_2:81560310-81560329 Msa0429990:CDS 35.0%
TTGTTCAACTACTCTTGATG+GGG - chr3_2:81560311-81560330 Msa0429990:CDS 35.0%
! TACATGGATTTTGTTAGTCC+TGG - chr3_2:81560456-81560475 Msa0429990:five_prime_UTR 35.0%
!! AACAATTGATTTGTAGTCCC+GGG - chr3_2:81559399-81559418 Msa0429990:CDS 35.0%
AGCGGATAATTAGAGAACAA+TGG - chr3_2:81559427-81559446 Msa0429990:CDS 35.0%
ACATACCACTTTAAGCTTTC+AGG + chr3_2:81559820-81559839 None:intergenic 35.0%
GAGTTAATGGCATACCAATT+TGG - chr3_2:81560236-81560255 Msa0429990:CDS 35.0%
!! ATACCAATTTGGTTTGAAGC+TGG - chr3_2:81560247-81560266 Msa0429990:CDS 35.0%
GTTGTTCAACTACTCTTGAT+GGG - chr3_2:81560310-81560329 Msa0429990:CDS 35.0%
TTGTTCAACTACTCTTGATG+GGG - chr3_2:81560311-81560330 Msa0429990:CDS 35.0%
! TACATGGATTTTGTTAGTCC+TGG - chr3_2:81560456-81560475 Msa0429990:five_prime_UTR 35.0%
ATTGGTAAACCTTCAACAGC+AGG - chr3_2:81559515-81559534 Msa0429990:intron 40.0%
TACGTTCCATCAAGATAGGT+CGG + chr3_2:81559650-81559669 None:intergenic 40.0%
TTAGGAGTCAAAATGCAGAG+AGG + chr3_2:81559683-81559702 None:intergenic 40.0%
CTTGAAAAGAGAACTAGCAC+TGG + chr3_2:81559721-81559740 None:intergenic 40.0%
AGGATCCTGAAAGCTTAAAG+TGG - chr3_2:81559812-81559831 Msa0429990:intron 40.0%
TTTGCAATGCTTGGAGTCTT+GGG - chr3_2:81559865-81559884 Msa0429990:intron 40.0%
! TTAGATCATCGTAGCTTTGC+AGG + chr3_2:81560034-81560053 None:intergenic 40.0%
TAGAGAATCACAGCCAAACA+TGG + chr3_2:81560094-81560113 None:intergenic 40.0%
TTGGCTGTGATTCTCTATCA+AGG - chr3_2:81560097-81560116 Msa0429990:CDS 40.0%
AAATACGAGTTTGCCAACAC+AGG - chr3_2:81560277-81560296 Msa0429990:CDS 40.0%
AATACGAGTTTGCCAACACA+GGG - chr3_2:81560278-81560297 Msa0429990:CDS 40.0%
CGTTGTTCAACTACTCTTGA+TGG - chr3_2:81560309-81560328 Msa0429990:CDS 40.0%
!! TGGGGTAGGATTTTAATCAC+CGG - chr3_2:81560329-81560348 Msa0429990:CDS 40.0%
TCAACTCATCAACCAGAAGT+TGG + chr3_2:81560358-81560377 None:intergenic 40.0%
ACAGGTATGCTGAAACAAGA+AGG - chr3_2:81560433-81560452 Msa0429990:exon 40.0%
! TGCTGAAACAAGAAGGTACA+TGG - chr3_2:81560440-81560459 Msa0429990:exon 40.0%
ATTGGTAAACCTTCAACAGC+AGG - chr3_2:81559515-81559534 Msa0429990:intron 40.0%
TACGTTCCATCAAGATAGGT+CGG + chr3_2:81559650-81559669 None:intergenic 40.0%
TTAGGAGTCAAAATGCAGAG+AGG + chr3_2:81559683-81559702 None:intergenic 40.0%
CTTGAAAAGAGAACTAGCAC+TGG + chr3_2:81559721-81559740 None:intergenic 40.0%
AGGATCCTGAAAGCTTAAAG+TGG - chr3_2:81559812-81559831 Msa0429990:intron 40.0%
TTTGCAATGCTTGGAGTCTT+GGG - chr3_2:81559865-81559884 Msa0429990:intron 40.0%
! TTAGATCATCGTAGCTTTGC+AGG + chr3_2:81560034-81560053 None:intergenic 40.0%
TAGAGAATCACAGCCAAACA+TGG + chr3_2:81560094-81560113 None:intergenic 40.0%
TTGGCTGTGATTCTCTATCA+AGG - chr3_2:81560097-81560116 Msa0429990:CDS 40.0%
AAATACGAGTTTGCCAACAC+AGG - chr3_2:81560277-81560296 Msa0429990:CDS 40.0%
AATACGAGTTTGCCAACACA+GGG - chr3_2:81560278-81560297 Msa0429990:CDS 40.0%
CGTTGTTCAACTACTCTTGA+TGG - chr3_2:81560309-81560328 Msa0429990:CDS 40.0%
!! TGGGGTAGGATTTTAATCAC+CGG - chr3_2:81560329-81560348 Msa0429990:CDS 40.0%
TCAACTCATCAACCAGAAGT+TGG + chr3_2:81560358-81560377 None:intergenic 40.0%
ACAGGTATGCTGAAACAAGA+AGG - chr3_2:81560433-81560452 Msa0429990:exon 40.0%
! TGCTGAAACAAGAAGGTACA+TGG - chr3_2:81560440-81560459 Msa0429990:exon 40.0%
!! TTGATTTGTAGTCCCGGGAT+AGG - chr3_2:81559404-81559423 Msa0429990:CDS 45.0%
TAATTATCCGCTCCTATCCC+GGG + chr3_2:81559419-81559438 None:intergenic 45.0%
CTAATTATCCGCTCCTATCC+CGG + chr3_2:81559420-81559439 None:intergenic 45.0%
ACGTTCCATCAAGATAGGTC+GGG + chr3_2:81559649-81559668 None:intergenic 45.0%
GGCTTACGTTCCATCAAGAT+AGG + chr3_2:81559654-81559673 None:intergenic 45.0%
! CAAAATGCAGAGAGGCGTAA+GGG + chr3_2:81559675-81559694 None:intergenic 45.0%
! TCAAAATGCAGAGAGGCGTA+AGG + chr3_2:81559676-81559695 None:intergenic 45.0%
AATCTCCAGGCAGACTGAAA+AGG + chr3_2:81559765-81559784 None:intergenic 45.0%
! TTCAGTCTGCCTGGAGATTT+TGG - chr3_2:81559766-81559785 Msa0429990:intron 45.0%
! TCAGTCTGCCTGGAGATTTT+GGG - chr3_2:81559767-81559786 Msa0429990:intron 45.0%
CATTCTCGCTTTGCAATGCT+TGG - chr3_2:81559856-81559875 Msa0429990:intron 45.0%
CTTTGCAATGCTTGGAGTCT+TGG - chr3_2:81559864-81559883 Msa0429990:intron 45.0%
GCACCAGCTTCAAACCAAAT+TGG + chr3_2:81560253-81560272 None:intergenic 45.0%
TCAACTACTCTTGATGGGGT+AGG - chr3_2:81560315-81560334 Msa0429990:CDS 45.0%
ATCAACCAGAAGTTGGAAGC+CGG + chr3_2:81560351-81560370 None:intergenic 45.0%
TCCTGGATCTCAAGCTAAAG+AGG - chr3_2:81560473-81560492 Msa0429990:five_prime_UTR 45.0%
CCTGGATCTCAAGCTAAAGA+GGG - chr3_2:81560474-81560493 Msa0429990:five_prime_UTR 45.0%
GCTAAAGAGGGTTCCTTCTT+TGG - chr3_2:81560486-81560505 Msa0429990:five_prime_UTR 45.0%
!! TTGATTTGTAGTCCCGGGAT+AGG - chr3_2:81559404-81559423 Msa0429990:CDS 45.0%
TAATTATCCGCTCCTATCCC+GGG + chr3_2:81559419-81559438 None:intergenic 45.0%
CTAATTATCCGCTCCTATCC+CGG + chr3_2:81559420-81559439 None:intergenic 45.0%
ACGTTCCATCAAGATAGGTC+GGG + chr3_2:81559649-81559668 None:intergenic 45.0%
GGCTTACGTTCCATCAAGAT+AGG + chr3_2:81559654-81559673 None:intergenic 45.0%
! CAAAATGCAGAGAGGCGTAA+GGG + chr3_2:81559675-81559694 None:intergenic 45.0%
! TCAAAATGCAGAGAGGCGTA+AGG + chr3_2:81559676-81559695 None:intergenic 45.0%
AATCTCCAGGCAGACTGAAA+AGG + chr3_2:81559765-81559784 None:intergenic 45.0%
! TTCAGTCTGCCTGGAGATTT+TGG - chr3_2:81559766-81559785 Msa0429990:intron 45.0%
! TCAGTCTGCCTGGAGATTTT+GGG - chr3_2:81559767-81559786 Msa0429990:intron 45.0%
CATTCTCGCTTTGCAATGCT+TGG - chr3_2:81559856-81559875 Msa0429990:intron 45.0%
CTTTGCAATGCTTGGAGTCT+TGG - chr3_2:81559864-81559883 Msa0429990:intron 45.0%
GCACCAGCTTCAAACCAAAT+TGG + chr3_2:81560253-81560272 None:intergenic 45.0%
TCAACTACTCTTGATGGGGT+AGG - chr3_2:81560315-81560334 Msa0429990:CDS 45.0%
ATCAACCAGAAGTTGGAAGC+CGG + chr3_2:81560351-81560370 None:intergenic 45.0%
TCCTGGATCTCAAGCTAAAG+AGG - chr3_2:81560473-81560492 Msa0429990:five_prime_UTR 45.0%
CCTGGATCTCAAGCTAAAGA+GGG - chr3_2:81560474-81560493 Msa0429990:five_prime_UTR 45.0%
GCTAAAGAGGGTTCCTTCTT+TGG - chr3_2:81560486-81560505 Msa0429990:five_prime_UTR 45.0%
GTTCCATCAAGATAGGTCGG+GGG + chr3_2:81559647-81559666 None:intergenic 50.0%
CGTTCCATCAAGATAGGTCG+GGG + chr3_2:81559648-81559667 None:intergenic 50.0%
! GGTAACCTTTTCAGTCTGCC+TGG - chr3_2:81559757-81559776 Msa0429990:intron 50.0%
!!! GATTTTGGGTTCGACCCACT+TGG - chr3_2:81559781-81559800 Msa0429990:intron 50.0%
GATCCTCTCCAAGTCCAAGT+GGG + chr3_2:81559798-81559817 None:intergenic 50.0%
GTGGTATGTGCAAGCAGAGT+TGG - chr3_2:81559831-81559850 Msa0429990:intron 50.0%
!! GAGGTTGGATTGGCCATGTT+TGG - chr3_2:81560078-81560097 Msa0429990:CDS 50.0%
!! AATCACCGGCTTCCAACTTC+TGG - chr3_2:81560343-81560362 Msa0429990:CDS 50.0%
!! CCCTCTTTAGCTTGAGATCC+AGG + chr3_2:81560477-81560496 None:intergenic 50.0%
GTTCCATCAAGATAGGTCGG+GGG + chr3_2:81559647-81559666 None:intergenic 50.0%
CGTTCCATCAAGATAGGTCG+GGG + chr3_2:81559648-81559667 None:intergenic 50.0%
! GGTAACCTTTTCAGTCTGCC+TGG - chr3_2:81559757-81559776 Msa0429990:intron 50.0%
!!! GATTTTGGGTTCGACCCACT+TGG - chr3_2:81559781-81559800 Msa0429990:intron 50.0%
GATCCTCTCCAAGTCCAAGT+GGG + chr3_2:81559798-81559817 None:intergenic 50.0%
GTGGTATGTGCAAGCAGAGT+TGG - chr3_2:81559831-81559850 Msa0429990:intron 50.0%
!! GAGGTTGGATTGGCCATGTT+TGG - chr3_2:81560078-81560097 Msa0429990:CDS 50.0%
!! AATCACCGGCTTCCAACTTC+TGG - chr3_2:81560343-81560362 Msa0429990:CDS 50.0%
!! CCCTCTTTAGCTTGAGATCC+AGG + chr3_2:81560477-81560496 None:intergenic 50.0%
TTGTAGTCCCGGGATAGGAG+CGG - chr3_2:81559409-81559428 Msa0429990:CDS 55.0%
CAGTGGTGTCCTGCTGTTGA+AGG + chr3_2:81559527-81559546 None:intergenic 55.0%
CTTCAACAGCAGGACACCAC+TGG - chr3_2:81559525-81559544 Msa0429990:intron 55.0%
GATCCCCCGACCTATCTTGA+TGG - chr3_2:81559641-81559660 Msa0429990:CDS 55.0%
GGGTCGAACCCAAAATCTCC+AGG + chr3_2:81559778-81559797 None:intergenic 55.0%
GGATCCTCTCCAAGTCCAAG+TGG + chr3_2:81559799-81559818 None:intergenic 55.0%
CTTCGCGTCGCAGGAGTTAA+TGG - chr3_2:81560223-81560242 Msa0429990:intron 55.0%
AACGACGAGTGTCCCTGTGT+TGG + chr3_2:81560293-81560312 None:intergenic 55.0%
TTGTAGTCCCGGGATAGGAG+CGG - chr3_2:81559409-81559428 Msa0429990:CDS 55.0%
CAGTGGTGTCCTGCTGTTGA+AGG + chr3_2:81559527-81559546 None:intergenic 55.0%
CTTCAACAGCAGGACACCAC+TGG - chr3_2:81559525-81559544 Msa0429990:intron 55.0%
GATCCCCCGACCTATCTTGA+TGG - chr3_2:81559641-81559660 Msa0429990:CDS 55.0%
GGGTCGAACCCAAAATCTCC+AGG + chr3_2:81559778-81559797 None:intergenic 55.0%
GGATCCTCTCCAAGTCCAAG+TGG + chr3_2:81559799-81559818 None:intergenic 55.0%
CTTCGCGTCGCAGGAGTTAA+TGG - chr3_2:81560223-81560242 Msa0429990:intron 55.0%
AACGACGAGTGTCCCTGTGT+TGG + chr3_2:81560293-81560312 None:intergenic 55.0%
CAGCACAACAGCGACCCACA+TGG - chr3_2:81559606-81559625 Msa0429990:CDS 60.0%
TCAAGTCCCGGGAGCCATGT+GGG + chr3_2:81559623-81559642 None:intergenic 60.0%
ATCAAGTCCCGGGAGCCATG+TGG + chr3_2:81559624-81559643 None:intergenic 60.0%
TAGGTCGGGGGATCAAGTCC+CGG + chr3_2:81559635-81559654 None:intergenic 60.0%
GGGTTCGACCCACTTGGACT+TGG - chr3_2:81559787-81559806 Msa0429990:intron 60.0%
CGACCCACTTGGACTTGGAG+AGG - chr3_2:81559792-81559811 Msa0429990:intron 60.0%
ATGCAGCTACTTCGCGTCGC+AGG - chr3_2:81560214-81560233 Msa0429990:intron 60.0%
CAGCACAACAGCGACCCACA+TGG - chr3_2:81559606-81559625 Msa0429990:CDS 60.0%
TCAAGTCCCGGGAGCCATGT+GGG + chr3_2:81559623-81559642 None:intergenic 60.0%
ATCAAGTCCCGGGAGCCATG+TGG + chr3_2:81559624-81559643 None:intergenic 60.0%
TAGGTCGGGGGATCAAGTCC+CGG + chr3_2:81559635-81559654 None:intergenic 60.0%
GGGTTCGACCCACTTGGACT+TGG - chr3_2:81559787-81559806 Msa0429990:intron 60.0%
CGACCCACTTGGACTTGGAG+AGG - chr3_2:81559792-81559811 Msa0429990:intron 60.0%
ATGCAGCTACTTCGCGTCGC+AGG - chr3_2:81560214-81560233 Msa0429990:intron 60.0%
!! CAGCAGGACACCACTGGCTC+AGG - chr3_2:81559531-81559550 Msa0429990:intron 65.0%
CAGGCCTGCTGCTGCAGGAA+CGG - chr3_2:81559550-81559569 Msa0429990:intron 65.0%
AGGCCTGCTGCTGCAGGAAC+GGG - chr3_2:81559551-81559570 Msa0429990:intron 65.0%
ACTCCCGTTCCTGCAGCAGC+AGG + chr3_2:81559557-81559576 None:intergenic 65.0%
ACAGCGACCCACATGGCTCC+CGG - chr3_2:81559613-81559632 Msa0429990:CDS 65.0%
AGGTCGGGGGATCAAGTCCC+GGG + chr3_2:81559634-81559653 None:intergenic 65.0%
!! CAGCAGGACACCACTGGCTC+AGG - chr3_2:81559531-81559550 Msa0429990:intron 65.0%
CAGGCCTGCTGCTGCAGGAA+CGG - chr3_2:81559550-81559569 Msa0429990:intron 65.0%
AGGCCTGCTGCTGCAGGAAC+GGG - chr3_2:81559551-81559570 Msa0429990:intron 65.0%
ACTCCCGTTCCTGCAGCAGC+AGG + chr3_2:81559557-81559576 None:intergenic 65.0%
ACAGCGACCCACATGGCTCC+CGG - chr3_2:81559613-81559632 Msa0429990:CDS 65.0%
AGGTCGGGGGATCAAGTCCC+GGG + chr3_2:81559634-81559653 None:intergenic 65.0%
CAGCAGCAGGCCTGAGCCAG+TGG + chr3_2:81559544-81559563 None:intergenic 70.0%
TGGCTCAGGCCTGCTGCTGC+AGG - chr3_2:81559545-81559564 Msa0429990:intron 70.0%
CAGCGACCCACATGGCTCCC+GGG - chr3_2:81559614-81559633 Msa0429990:CDS 70.0%
CAGCAGCAGGCCTGAGCCAG+TGG + chr3_2:81559544-81559563 None:intergenic 70.0%
TGGCTCAGGCCTGCTGCTGC+AGG - chr3_2:81559545-81559564 Msa0429990:intron 70.0%
CAGCGACCCACATGGCTCCC+GGG - chr3_2:81559614-81559633 Msa0429990:CDS 70.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 81559381 81560509 81559381 ID=Msa0429990;Name=Msa0429990
chr3_2 mRNA 81559381 81560509 81559381 ID=Msa0429990-mRNA-1;Parent=Msa0429990;Name=Msa0429990-mRNA-1;_AED=0.39;_eAED=0.39;_QI=65|1|0.75|1|0.66|0.5|4|0|180
chr3_2 exon 81559381 81559453 81559381 ID=Msa0429990-mRNA-1:exon:22559;Parent=Msa0429990-mRNA-1
chr3_2 exon 81559558 81559670 81559558 ID=Msa0429990-mRNA-1:exon:22558;Parent=Msa0429990-mRNA-1
chr3_2 exon 81559987 81560119 81559987 ID=Msa0429990-mRNA-1:exon:22557;Parent=Msa0429990-mRNA-1
chr3_2 exon 81560224 81560509 81560224 ID=Msa0429990-mRNA-1:exon:22556;Parent=Msa0429990-mRNA-1
chr3_2 five_prime_UTR 81560445 81560509 81560445 ID=Msa0429990-mRNA-1:five_prime_utr;Parent=Msa0429990-mRNA-1
chr3_2 CDS 81560224 81560444 81560224 ID=Msa0429990-mRNA-1:cds;Parent=Msa0429990-mRNA-1
chr3_2 CDS 81559987 81560119 81559987 ID=Msa0429990-mRNA-1:cds;Parent=Msa0429990-mRNA-1
chr3_2 CDS 81559558 81559670 81559558 ID=Msa0429990-mRNA-1:cds;Parent=Msa0429990-mRNA-1
chr3_2 CDS 81559381 81559453 81559381 ID=Msa0429990-mRNA-1:cds;Parent=Msa0429990-mRNA-1
Gene Sequence

>Msa0429990

ATGGTTGCACTTGCAGCAATAGCAAGAAGCTTCCATTTCCAGCAACATTCTTTAATCAACAGCAATGTCATTGGTAAACCTTCAACAGCAGGACACCACTGGCTCAGGCCTGCTGCTGCAGGAACGGGAGTCACTCCACGTTATAAACAAATTTGTGCTGCAGCACAACAGCGACCCACATGGCTCCCGGGACTTGATCCCCCGACCTATCTTGATGGAACTCTGCCTGGAGATTTTGGGTTCGACCCACTTGGACTTGGAGAGGATCCTGAAAGCTTAAAGTGGTATGTGCAAGCAGAGTTGGTTCATTCTCGCTTTGCAATGCTTGGAGTCTTGGGAATTTTAGTCACAGATCTACTTCGCGTCGCAGGAGTTAATGGCATACCAATTTGGTTTGAAGCTGGTGCAGTAAAATACGAGTTTGCCAACACAGGGACACTCGTCGTTGTTCAACTACTCTTGATGGGGTATGCTGAAACAAGAAGGTACATGGATTTTGTTAGTCCTGGATCTCAAGCTAAAGAGGGTTCCTTCTTTGGA

Protein sequence

>Msa0429990

MVALAAIARSFHFQQHSLINSNVIGKPSTAGHHWLRPAAAGTGVTPRYKQICAAAQQRPTWLPGLDPPTYLDGTLPGDFGFDPLGLGEDPESLKWYVQAELVHSRFAMLGVLGILVTDLLRVAGVNGIPIWFEAGAVKYEFANTGTLVVVQLLLMGYAETRRYMDFVSPGSQAKEGSFFG