AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0377990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377990 MtrunA17_Chr3g0130201 89.091 165 12 1 1 165 9 167 3.13e-100 285
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0377990 AT1G74880.1 58.788 165 61 1 1 165 1 158 1.66e-62 190

Find 58 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATCTTTACCGTCAATTATT+TGG 0.062226 3_1:-78702517 Msa0377990:three_prime_UTR
GGTTTCTTAGGAAGAGTCTT+AGG 0.205905 3_1:+78703494 None:intergenic
GTAGTCTAATCCTTTGTAAT+AGG 0.224129 3_1:+78703190 None:intergenic
CTGGAATAAACAGGTTTCTT+AGG 0.242562 3_1:+78703482 None:intergenic
TCATGGCCGAAAACATTATC+TGG 0.263318 3_1:+78702476 None:intergenic
ATTGTGTCTCTCTTAATTAA+TGG 0.294241 3_1:-78703723 Msa0377990:exon
ATCTTTACCGTCAATTATTT+GGG 0.313147 3_1:-78702516 Msa0377990:three_prime_UTR
CTTATCTCTAGTTGTATGTA+TGG 0.394151 3_1:-78703747 Msa0377990:five_prime_UTR
CTTGACTCACTGGAATAAAC+AGG 0.396415 3_1:+78703473 None:intergenic
GATATGCGTATATTTGAAAC+AGG 0.408664 3_1:-78703050 Msa0377990:CDS
CAAATAATTGACGGTAAAGA+TGG 0.409008 3_1:+78702518 None:intergenic
TCTTGAACTGCACGAATCAA+TGG 0.413571 3_1:+78703608 None:intergenic
GTTTCTTAGGAAGAGTCTTA+GGG 0.440236 3_1:+78703495 None:intergenic
TGCTTAATTCTCAGGTTGCA+TGG 0.442545 3_1:-78702837 Msa0377990:intron
GCAGTTCAAGACGGTGAACC+AGG 0.447486 3_1:-78703596 Msa0377990:CDS
TAGTCTAATCCTTTGTAATA+GGG 0.459657 3_1:+78703191 None:intergenic
GCATCAGAGCTCTTAGTTTG+TGG 0.477417 3_1:+78703560 None:intergenic
TCTTACAATACTAGACAAAC+AGG 0.486958 3_1:+78702584 None:intergenic
AAATAATTGACGGTAAAGAT+GGG 0.491445 3_1:+78702519 None:intergenic
TTTGAGAAATGGGAAAGAGA+AGG 0.496635 3_1:+78703665 None:intergenic
CTTGAACTGCACGAATCAAT+GGG 0.503362 3_1:+78703609 None:intergenic
GGAAGCCAAGCTGGAGCAGT+GGG 0.508111 3_1:+78702805 None:intergenic
AGGAAGAGTCTTAGGGGCAG+TGG 0.518025 3_1:+78703502 None:intergenic
ATGGGAAAGAGAAGGAAAGG+AGG 0.524817 3_1:+78703673 None:intergenic
GAAATGGGAAAGAGAAGGAA+AGG 0.530112 3_1:+78703670 None:intergenic
TAATTGTCCCAAATAATTGA+CGG 0.531007 3_1:+78702509 None:intergenic
GCTTAATTCTCAGGTTGCAT+GGG 0.543172 3_1:-78702836 Msa0377990:intron
TCCTACATACATGCTTATCA+AGG 0.544432 3_1:-78702785 Msa0377990:intron
AGGAAGCCAAGCTGGAGCAG+TGG 0.544685 3_1:+78702804 None:intergenic
GAGTCCCCACTGCTCCAGCT+TGG 0.545534 3_1:-78702810 Msa0377990:CDS
AATTTGTGGACAGTGAAGAA+AGG 0.549691 3_1:-78703373 Msa0377990:intron
AATTCTCAGGTTGCATGGGT+AGG 0.550094 3_1:-78702832 Msa0377990:intron
TTGACGGTAAAGATGGGGTA+TGG 0.550468 3_1:+78702525 None:intergenic
TCTAATCCTTTGTAATAGGG+TGG 0.556199 3_1:+78703194 None:intergenic
TGAAGAAAGGTCAGATTGTG+AGG 0.558487 3_1:-78703360 Msa0377990:CDS
ATGTATGTAGGAAGCCAAGC+TGG 0.563654 3_1:+78702796 None:intergenic
GGGCACCCACCCTATTACAA+AGG 0.572065 3_1:-78703200 Msa0377990:CDS
TCAGATTGTGAGGGTGGACA+AGG 0.576125 3_1:-78703350 Msa0377990:CDS
GAAAGGTCAGATTGTGAGGG+TGG 0.585375 3_1:-78703356 Msa0377990:CDS
CATGGCCGAAAACATTATCT+GGG 0.595369 3_1:+78702477 None:intergenic
CTAATCCTTTGTAATAGGGT+GGG 0.595783 3_1:+78703195 None:intergenic
CAGTTCAAGACGGTGAACCA+GGG 0.597426 3_1:-78703595 Msa0377990:CDS
AGCACTACTAGAGGAGGCTG+AGG 0.602396 3_1:+78703535 None:intergenic
ATGGGGTATGGTGTCTCTGA+TGG 0.613977 3_1:+78702537 None:intergenic
TTGATTCGTGCAGTTCAAGA+CGG 0.616062 3_1:-78703605 Msa0377990:CDS
TTTGTTTGTTTACCTCACCA+CGG 0.617430 3_1:+78703156 None:intergenic
AGTTCAAGACGGTGAACCAG+GGG 0.628235 3_1:-78703594 Msa0377990:CDS
ACCTTGATAAGCATGTATGT+AGG 0.632174 3_1:+78702784 None:intergenic
GAATCAATGGGAAAGAAGAA+CGG 0.633893 3_1:+78703621 None:intergenic
TTTCTTAGGAAGAGTCTTAG+GGG 0.641863 3_1:+78703496 None:intergenic
AATAATTGACGGTAAAGATG+GGG 0.654864 3_1:+78702520 None:intergenic
GAAGAAAGGTCAGATTGTGA+GGG 0.659835 3_1:-78703359 Msa0377990:CDS
AGACTGAGCACTACTAGAGG+AGG 0.683341 3_1:+78703529 None:intergenic
GACTACATTTACGAAGACCG+TGG 0.695548 3_1:-78703173 Msa0377990:CDS
TGAAGACTGAGCACTACTAG+AGG 0.698555 3_1:+78703526 None:intergenic
CATTTACGAAGACCGTGGTG+AGG 0.713150 3_1:-78703168 Msa0377990:intron
GTTCAAGACGGTGAACCAGG+GGG 0.724086 3_1:-78703593 Msa0377990:CDS
GAAGCCAAGCTGGAGCAGTG+GGG 0.758823 3_1:+78702806 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTCATTTTTGTTAATTTG+TGG - chr3_1:78702877-78702896 Msa0377990:intron 15.0%
!!! ATTTTGTTTTCATAATCTTT+TGG + chr3_1:78703136-78703155 None:intergenic 15.0%
!! TGTTTGTGTAAAAAAATTAT+TGG + chr3_1:78703314-78703333 None:intergenic 15.0%
!!! TATTCATTTTTGTTAATTTG+TGG - chr3_1:78702877-78702896 Msa0377990:intron 15.0%
!!! ATTTTGTTTTCATAATCTTT+TGG + chr3_1:78703136-78703155 None:intergenic 15.0%
!! TGTTTGTGTAAAAAAATTAT+TGG + chr3_1:78703314-78703333 None:intergenic 15.0%
! ATTGTGTCTCTCTTAATTAA+TGG - chr3_1:78702541-78702560 Msa0377990:three_prime_UTR 25.0%
!!! TGTCAAAGTTTTTGAGAAAT+GGG + chr3_1:78702612-78702631 None:intergenic 25.0%
!!! TTGTCAAAGTTTTTGAGAAA+TGG + chr3_1:78702613-78702632 None:intergenic 25.0%
! ATTTCTCAAAAACTTTGACA+AGG - chr3_1:78702612-78702631 Msa0377990:CDS 25.0%
! AGATACTGAAAAATTAACCT+TGG + chr3_1:78703037-78703056 None:intergenic 25.0%
!!! ATTTTTCAGTATCTTTCTGT+TGG - chr3_1:78703043-78703062 Msa0377990:CDS 25.0%
!!! TTTTTCAGTATCTTTCTGTT+GGG - chr3_1:78703044-78703063 Msa0377990:CDS 25.0%
! TAGTCTAATCCTTTGTAATA+GGG + chr3_1:78703076-78703095 None:intergenic 25.0%
! AAATGTCAAACTGTATTTGT+AGG - chr3_1:78703186-78703205 Msa0377990:CDS 25.0%
!! GTTTTCTATGATTCCAATTA+TGG - chr3_1:78703346-78703365 Msa0377990:CDS 25.0%
! AAATAATTGACGGTAAAGAT+GGG + chr3_1:78703748-78703767 None:intergenic 25.0%
! ATCTTTACCGTCAATTATTT+GGG - chr3_1:78703748-78703767 Msa0377990:five_prime_UTR 25.0%
! TAATTGTCCCAAATAATTGA+CGG + chr3_1:78703758-78703777 None:intergenic 25.0%
! ATTGTGTCTCTCTTAATTAA+TGG - chr3_1:78702541-78702560 Msa0377990:three_prime_UTR 25.0%
!!! TGTCAAAGTTTTTGAGAAAT+GGG + chr3_1:78702612-78702631 None:intergenic 25.0%
!!! TTGTCAAAGTTTTTGAGAAA+TGG + chr3_1:78702613-78702632 None:intergenic 25.0%
! ATTTCTCAAAAACTTTGACA+AGG - chr3_1:78702612-78702631 Msa0377990:CDS 25.0%
! AGATACTGAAAAATTAACCT+TGG + chr3_1:78703037-78703056 None:intergenic 25.0%
!!! ATTTTTCAGTATCTTTCTGT+TGG - chr3_1:78703043-78703062 Msa0377990:CDS 25.0%
!!! TTTTTCAGTATCTTTCTGTT+GGG - chr3_1:78703044-78703063 Msa0377990:CDS 25.0%
! TAGTCTAATCCTTTGTAATA+GGG + chr3_1:78703076-78703095 None:intergenic 25.0%
! AAATGTCAAACTGTATTTGT+AGG - chr3_1:78703186-78703205 Msa0377990:CDS 25.0%
!! GTTTTCTATGATTCCAATTA+TGG - chr3_1:78703346-78703365 Msa0377990:CDS 25.0%
! AAATAATTGACGGTAAAGAT+GGG + chr3_1:78703748-78703767 None:intergenic 25.0%
! ATCTTTACCGTCAATTATTT+GGG - chr3_1:78703748-78703767 Msa0377990:five_prime_UTR 25.0%
! TAATTGTCCCAAATAATTGA+CGG + chr3_1:78703758-78703777 None:intergenic 25.0%
! AAGAAGATGACTCTTTTGTT+GGG + chr3_1:78702500-78702519 None:intergenic 30.0%
! TAAGAAGATGACTCTTTTGT+TGG + chr3_1:78702501-78702520 None:intergenic 30.0%
CTTATCTCTAGTTGTATGTA+TGG - chr3_1:78702517-78702536 Msa0377990:three_prime_UTR 30.0%
GTAGTCTAATCCTTTGTAAT+AGG + chr3_1:78703077-78703096 None:intergenic 30.0%
! GATATGCGTATATTTGAAAC+AGG - chr3_1:78703214-78703233 Msa0377990:CDS 30.0%
CTTCACAATGTTACCATAAT+TGG + chr3_1:78703362-78703381 None:intergenic 30.0%
TAATGCTTTACTTGTTCCAA+TGG - chr3_1:78703502-78703521 Msa0377990:CDS 30.0%
CAACAAAAAAAGTAAGAGTG+AGG + chr3_1:78703623-78703642 None:intergenic 30.0%
TCTTACAATACTAGACAAAC+AGG + chr3_1:78703683-78703702 None:intergenic 30.0%
AATAATTGACGGTAAAGATG+GGG + chr3_1:78703747-78703766 None:intergenic 30.0%
CAAATAATTGACGGTAAAGA+TGG + chr3_1:78703749-78703768 None:intergenic 30.0%
CATCTTTACCGTCAATTATT+TGG - chr3_1:78703747-78703766 Msa0377990:five_prime_UTR 30.0%
! AAGAAGATGACTCTTTTGTT+GGG + chr3_1:78702500-78702519 None:intergenic 30.0%
! TAAGAAGATGACTCTTTTGT+TGG + chr3_1:78702501-78702520 None:intergenic 30.0%
CTTATCTCTAGTTGTATGTA+TGG - chr3_1:78702517-78702536 Msa0377990:three_prime_UTR 30.0%
GTAGTCTAATCCTTTGTAAT+AGG + chr3_1:78703077-78703096 None:intergenic 30.0%
! GATATGCGTATATTTGAAAC+AGG - chr3_1:78703214-78703233 Msa0377990:CDS 30.0%
CTTCACAATGTTACCATAAT+TGG + chr3_1:78703362-78703381 None:intergenic 30.0%
TAATGCTTTACTTGTTCCAA+TGG - chr3_1:78703502-78703521 Msa0377990:CDS 30.0%
CAACAAAAAAAGTAAGAGTG+AGG + chr3_1:78703623-78703642 None:intergenic 30.0%
TCTTACAATACTAGACAAAC+AGG + chr3_1:78703683-78703702 None:intergenic 30.0%
AATAATTGACGGTAAAGATG+GGG + chr3_1:78703747-78703766 None:intergenic 30.0%
CAAATAATTGACGGTAAAGA+TGG + chr3_1:78703749-78703768 None:intergenic 30.0%
CATCTTTACCGTCAATTATT+TGG - chr3_1:78703747-78703766 Msa0377990:five_prime_UTR 30.0%
TTTGAGAAATGGGAAAGAGA+AGG + chr3_1:78702602-78702621 None:intergenic 35.0%
GAATCAATGGGAAAGAAGAA+CGG + chr3_1:78702646-78702665 None:intergenic 35.0%
TTTCTTAGGAAGAGTCTTAG+GGG + chr3_1:78702771-78702790 None:intergenic 35.0%
GTTTCTTAGGAAGAGTCTTA+GGG + chr3_1:78702772-78702791 None:intergenic 35.0%
CTGGAATAAACAGGTTTCTT+AGG + chr3_1:78702785-78702804 None:intergenic 35.0%
AATTTGTGGACAGTGAAGAA+AGG - chr3_1:78702891-78702910 Msa0377990:intron 35.0%
CTAATCCTTTGTAATAGGGT+GGG + chr3_1:78703072-78703091 None:intergenic 35.0%
TCTAATCCTTTGTAATAGGG+TGG + chr3_1:78703073-78703092 None:intergenic 35.0%
TTTGTTTGTTTACCTCACCA+CGG + chr3_1:78703111-78703130 None:intergenic 35.0%
CAAACTGTATTTGTAGGTCT+TGG - chr3_1:78703192-78703211 Msa0377990:CDS 35.0%
TGTACCATTGCTTAATTCTC+AGG - chr3_1:78703419-78703438 Msa0377990:intron 35.0%
TCCTACATACATGCTTATCA+AGG - chr3_1:78703479-78703498 Msa0377990:intron 35.0%
ACCTTGATAAGCATGTATGT+AGG + chr3_1:78703483-78703502 None:intergenic 35.0%
TATTAGATTGTAGCAGCCAT+TGG + chr3_1:78703521-78703540 None:intergenic 35.0%
! TGCTACCCAGATAATGTTTT+CGG - chr3_1:78703782-78703801 Msa0377990:five_prime_UTR 35.0%
TTTGAGAAATGGGAAAGAGA+AGG + chr3_1:78702602-78702621 None:intergenic 35.0%
GAATCAATGGGAAAGAAGAA+CGG + chr3_1:78702646-78702665 None:intergenic 35.0%
TTTCTTAGGAAGAGTCTTAG+GGG + chr3_1:78702771-78702790 None:intergenic 35.0%
GTTTCTTAGGAAGAGTCTTA+GGG + chr3_1:78702772-78702791 None:intergenic 35.0%
CTGGAATAAACAGGTTTCTT+AGG + chr3_1:78702785-78702804 None:intergenic 35.0%
AATTTGTGGACAGTGAAGAA+AGG - chr3_1:78702891-78702910 Msa0377990:intron 35.0%
CTAATCCTTTGTAATAGGGT+GGG + chr3_1:78703072-78703091 None:intergenic 35.0%
TCTAATCCTTTGTAATAGGG+TGG + chr3_1:78703073-78703092 None:intergenic 35.0%
TTTGTTTGTTTACCTCACCA+CGG + chr3_1:78703111-78703130 None:intergenic 35.0%
CAAACTGTATTTGTAGGTCT+TGG - chr3_1:78703192-78703211 Msa0377990:CDS 35.0%
TGTACCATTGCTTAATTCTC+AGG - chr3_1:78703419-78703438 Msa0377990:intron 35.0%
TCCTACATACATGCTTATCA+AGG - chr3_1:78703479-78703498 Msa0377990:intron 35.0%
ACCTTGATAAGCATGTATGT+AGG + chr3_1:78703483-78703502 None:intergenic 35.0%
TATTAGATTGTAGCAGCCAT+TGG + chr3_1:78703521-78703540 None:intergenic 35.0%
! TGCTACCCAGATAATGTTTT+CGG - chr3_1:78703782-78703801 Msa0377990:five_prime_UTR 35.0%
GAAATGGGAAAGAGAAGGAA+AGG + chr3_1:78702597-78702616 None:intergenic 40.0%
CTTGAACTGCACGAATCAAT+GGG + chr3_1:78702658-78702677 None:intergenic 40.0%
TCTTGAACTGCACGAATCAA+TGG + chr3_1:78702659-78702678 None:intergenic 40.0%
! TTGATTCGTGCAGTTCAAGA+CGG - chr3_1:78702659-78702678 Msa0377990:intron 40.0%
GGTTTCTTAGGAAGAGTCTT+AGG + chr3_1:78702773-78702792 None:intergenic 40.0%
CTTGACTCACTGGAATAAAC+AGG + chr3_1:78702794-78702813 None:intergenic 40.0%
TATTTGGTTGCTTGACTCAC+TGG + chr3_1:78702804-78702823 None:intergenic 40.0%
TGAAGAAAGGTCAGATTGTG+AGG - chr3_1:78702904-78702923 Msa0377990:intron 40.0%
GAAGAAAGGTCAGATTGTGA+GGG - chr3_1:78702905-78702924 Msa0377990:intron 40.0%
TAGTTATGTCAGCTGTGAGT+AGG - chr3_1:78702993-78703012 Msa0377990:intron 40.0%
GGACTCAAATAACATGTCCA+AGG - chr3_1:78703017-78703036 Msa0377990:intron 40.0%
GCAACCTGAGAATTAAGCAA+TGG + chr3_1:78703426-78703445 None:intergenic 40.0%
! TGCTTAATTCTCAGGTTGCA+TGG - chr3_1:78703427-78703446 Msa0377990:intron 40.0%
! GCTTAATTCTCAGGTTGCAT+GGG - chr3_1:78703428-78703447 Msa0377990:intron 40.0%
GAAATGGGAAAGAGAAGGAA+AGG + chr3_1:78702597-78702616 None:intergenic 40.0%
CTTGAACTGCACGAATCAAT+GGG + chr3_1:78702658-78702677 None:intergenic 40.0%
TCTTGAACTGCACGAATCAA+TGG + chr3_1:78702659-78702678 None:intergenic 40.0%
! TTGATTCGTGCAGTTCAAGA+CGG - chr3_1:78702659-78702678 Msa0377990:intron 40.0%
GGTTTCTTAGGAAGAGTCTT+AGG + chr3_1:78702773-78702792 None:intergenic 40.0%
CTTGACTCACTGGAATAAAC+AGG + chr3_1:78702794-78702813 None:intergenic 40.0%
TATTTGGTTGCTTGACTCAC+TGG + chr3_1:78702804-78702823 None:intergenic 40.0%
TGAAGAAAGGTCAGATTGTG+AGG - chr3_1:78702904-78702923 Msa0377990:intron 40.0%
GAAGAAAGGTCAGATTGTGA+GGG - chr3_1:78702905-78702924 Msa0377990:intron 40.0%
TAGTTATGTCAGCTGTGAGT+AGG - chr3_1:78702993-78703012 Msa0377990:intron 40.0%
GGACTCAAATAACATGTCCA+AGG - chr3_1:78703017-78703036 Msa0377990:intron 40.0%
GCAACCTGAGAATTAAGCAA+TGG + chr3_1:78703426-78703445 None:intergenic 40.0%
! TGCTTAATTCTCAGGTTGCA+TGG - chr3_1:78703427-78703446 Msa0377990:intron 40.0%
! GCTTAATTCTCAGGTTGCAT+GGG - chr3_1:78703428-78703447 Msa0377990:intron 40.0%
ATGGGAAAGAGAAGGAAAGG+AGG + chr3_1:78702594-78702613 None:intergenic 45.0%
! GCATCAGAGCTCTTAGTTTG+TGG + chr3_1:78702707-78702726 None:intergenic 45.0%
TGAAGACTGAGCACTACTAG+AGG + chr3_1:78702741-78702760 None:intergenic 45.0%
TTATGTCAGCTGTGAGTAGG+AGG - chr3_1:78702996-78703015 Msa0377990:intron 45.0%
GACTACATTTACGAAGACCG+TGG - chr3_1:78703091-78703110 Msa0377990:intron 45.0%
! AATTCTCAGGTTGCATGGGT+AGG - chr3_1:78703432-78703451 Msa0377990:intron 45.0%
ATGTATGTAGGAAGCCAAGC+TGG + chr3_1:78703471-78703490 None:intergenic 45.0%
TTGACGGTAAAGATGGGGTA+TGG + chr3_1:78703742-78703761 None:intergenic 45.0%
ATGGGAAAGAGAAGGAAAGG+AGG + chr3_1:78702594-78702613 None:intergenic 45.0%
! GCATCAGAGCTCTTAGTTTG+TGG + chr3_1:78702707-78702726 None:intergenic 45.0%
TGAAGACTGAGCACTACTAG+AGG + chr3_1:78702741-78702760 None:intergenic 45.0%
TTATGTCAGCTGTGAGTAGG+AGG - chr3_1:78702996-78703015 Msa0377990:intron 45.0%
GACTACATTTACGAAGACCG+TGG - chr3_1:78703091-78703110 Msa0377990:intron 45.0%
! AATTCTCAGGTTGCATGGGT+AGG - chr3_1:78703432-78703451 Msa0377990:intron 45.0%
ATGTATGTAGGAAGCCAAGC+TGG + chr3_1:78703471-78703490 None:intergenic 45.0%
TTGACGGTAAAGATGGGGTA+TGG + chr3_1:78703742-78703761 None:intergenic 45.0%
!! AATTCAAATAAATATTTATT+TGG + chr3_1:78702820-78702839 None:intergenic 5.0%
!! AATTCAAATAAATATTTATT+TGG + chr3_1:78702820-78702839 None:intergenic 5.0%
CAGTTCAAGACGGTGAACCA+GGG - chr3_1:78702669-78702688 Msa0377990:intron 50.0%
AGTTCAAGACGGTGAACCAG+GGG - chr3_1:78702670-78702689 Msa0377990:intron 50.0%
AGACTGAGCACTACTAGAGG+AGG + chr3_1:78702738-78702757 None:intergenic 50.0%
GAAAGGTCAGATTGTGAGGG+TGG - chr3_1:78702908-78702927 Msa0377990:intron 50.0%
TCAGATTGTGAGGGTGGACA+AGG - chr3_1:78702914-78702933 Msa0377990:intron 50.0%
CATTTACGAAGACCGTGGTG+AGG - chr3_1:78703096-78703115 Msa0377990:intron 50.0%
GTCAGTAGTGTGTGTGCTGT+AGG - chr3_1:78703261-78703280 Msa0377990:intron 50.0%
GTGCTGTAGGTGTGAACCAA+AGG - chr3_1:78703274-78703293 Msa0377990:intron 50.0%
ATGGGGTATGGTGTCTCTGA+TGG + chr3_1:78703730-78703749 None:intergenic 50.0%
GGCACGTCACTATAGTGTGA+TGG + chr3_1:78702479-78702498 None:intergenic 50.0%
CAGTTCAAGACGGTGAACCA+GGG - chr3_1:78702669-78702688 Msa0377990:intron 50.0%
AGTTCAAGACGGTGAACCAG+GGG - chr3_1:78702670-78702689 Msa0377990:intron 50.0%
AGACTGAGCACTACTAGAGG+AGG + chr3_1:78702738-78702757 None:intergenic 50.0%
GAAAGGTCAGATTGTGAGGG+TGG - chr3_1:78702908-78702927 Msa0377990:intron 50.0%
TCAGATTGTGAGGGTGGACA+AGG - chr3_1:78702914-78702933 Msa0377990:intron 50.0%
CATTTACGAAGACCGTGGTG+AGG - chr3_1:78703096-78703115 Msa0377990:intron 50.0%
GTCAGTAGTGTGTGTGCTGT+AGG - chr3_1:78703261-78703280 Msa0377990:intron 50.0%
GTGCTGTAGGTGTGAACCAA+AGG - chr3_1:78703274-78703293 Msa0377990:intron 50.0%
ATGGGGTATGGTGTCTCTGA+TGG + chr3_1:78703730-78703749 None:intergenic 50.0%
GCAGTTCAAGACGGTGAACC+AGG - chr3_1:78702668-78702687 Msa0377990:intron 55.0%
GTTCAAGACGGTGAACCAGG+GGG - chr3_1:78702671-78702690 Msa0377990:intron 55.0%
AGCACTACTAGAGGAGGCTG+AGG + chr3_1:78702732-78702751 None:intergenic 55.0%
AGGAAGAGTCTTAGGGGCAG+TGG + chr3_1:78702765-78702784 None:intergenic 55.0%
GGGCACCCACCCTATTACAA+AGG - chr3_1:78703064-78703083 Msa0377990:intron 55.0%
GCAGTTCAAGACGGTGAACC+AGG - chr3_1:78702668-78702687 Msa0377990:intron 55.0%
GTTCAAGACGGTGAACCAGG+GGG - chr3_1:78702671-78702690 Msa0377990:intron 55.0%
AGCACTACTAGAGGAGGCTG+AGG + chr3_1:78702732-78702751 None:intergenic 55.0%
AGGAAGAGTCTTAGGGGCAG+TGG + chr3_1:78702765-78702784 None:intergenic 55.0%
GGGCACCCACCCTATTACAA+AGG - chr3_1:78703064-78703083 Msa0377990:intron 55.0%
GGCATGCTGTCAGCTGCCTT+TGG + chr3_1:78703293-78703312 None:intergenic 60.0%
GAAGCCAAGCTGGAGCAGTG+GGG + chr3_1:78703461-78703480 None:intergenic 60.0%
GGAAGCCAAGCTGGAGCAGT+GGG + chr3_1:78703462-78703481 None:intergenic 60.0%
AGGAAGCCAAGCTGGAGCAG+TGG + chr3_1:78703463-78703482 None:intergenic 60.0%
GGCATGCTGTCAGCTGCCTT+TGG + chr3_1:78703293-78703312 None:intergenic 60.0%
GAAGCCAAGCTGGAGCAGTG+GGG + chr3_1:78703461-78703480 None:intergenic 60.0%
GGAAGCCAAGCTGGAGCAGT+GGG + chr3_1:78703462-78703481 None:intergenic 60.0%
AGGAAGCCAAGCTGGAGCAG+TGG + chr3_1:78703463-78703482 None:intergenic 60.0%
TGTGGCTGTGTACTGCCCCC+TGG + chr3_1:78702689-78702708 None:intergenic 65.0%
GAGTCCCCACTGCTCCAGCT+TGG - chr3_1:78703454-78703473 Msa0377990:intron 65.0%
TGTGGCTGTGTACTGCCCCC+TGG + chr3_1:78702689-78702708 None:intergenic 65.0%
GAGTCCCCACTGCTCCAGCT+TGG - chr3_1:78703454-78703473 Msa0377990:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 78702479 78703807 78702479 ID=Msa0377990;Name=Msa0377990
chr3_1 mRNA 78702479 78703807 78702479 ID=Msa0377990-mRNA-1;Parent=Msa0377990;Name=Msa0377990-mRNA-1;_AED=0.10;_eAED=0.10;_QI=81|1|1|1|1|1|6|132|165
chr3_1 exon 78702479 78702640 78702479 ID=Msa0377990-mRNA-1:exon:19101;Parent=Msa0377990-mRNA-1
chr3_1 exon 78702786 78702845 78702786 ID=Msa0377990-mRNA-1:exon:19100;Parent=Msa0377990-mRNA-1
chr3_1 exon 78703037 78703078 78703037 ID=Msa0377990-mRNA-1:exon:19099;Parent=Msa0377990-mRNA-1
chr3_1 exon 78703169 78703234 78703169 ID=Msa0377990-mRNA-1:exon:19098;Parent=Msa0377990-mRNA-1
chr3_1 exon 78703327 78703382 78703327 ID=Msa0377990-mRNA-1:exon:19097;Parent=Msa0377990-mRNA-1
chr3_1 exon 78703483 78703807 78703483 ID=Msa0377990-mRNA-1:exon:19096;Parent=Msa0377990-mRNA-1
chr3_1 five_prime_UTR 78703727 78703807 78703727 ID=Msa0377990-mRNA-1:five_prime_utr;Parent=Msa0377990-mRNA-1
chr3_1 CDS 78703483 78703726 78703483 ID=Msa0377990-mRNA-1:cds;Parent=Msa0377990-mRNA-1
chr3_1 CDS 78703327 78703382 78703327 ID=Msa0377990-mRNA-1:cds;Parent=Msa0377990-mRNA-1
chr3_1 CDS 78703169 78703234 78703169 ID=Msa0377990-mRNA-1:cds;Parent=Msa0377990-mRNA-1
chr3_1 CDS 78703037 78703078 78703037 ID=Msa0377990-mRNA-1:cds;Parent=Msa0377990-mRNA-1
chr3_1 CDS 78702786 78702845 78702786 ID=Msa0377990-mRNA-1:cds;Parent=Msa0377990-mRNA-1
chr3_1 CDS 78702611 78702640 78702611 ID=Msa0377990-mRNA-1:cds;Parent=Msa0377990-mRNA-1
chr3_1 three_prime_UTR 78702479 78702610 78702479 ID=Msa0377990-mRNA-1:three_prime_utr;Parent=Msa0377990-mRNA-1
Gene Sequence

>Msa0377990

ATGGCTTTCTGTGTAACTCTCTGCTACTACACCTCCTTTCCTTCTCTTTCCCATTTCTCAAAAACTTTGACAAGGAAACATGTCCGTTCTTCTTTCCCATTGATTCGTGCAGTTCAAGACGGTGAACCAGGGGGCAGTACACAGCCACAAACTAAGAGCTCTGATGCTTCCTCAGCCTCCTCTAGTAGTGCTCAGTCTTCAACCACTGCCCCTAAGACTCTTCCTAAGAAACCTGTTTATTCCATGAAGAAAGGTCAGATTGTGAGGGTGGACAAGGAGAAATATCTCAATAGCATCAATTATCTTTCTGTTGGGCACCCACCCTATTACAAAGGATTAGACTACATTTACGAAGACCGTGGTGAGGTCTTGGATATGCGTATATTTGAAACAGGAGAGCATGCACTTGTTGCATGGGTAGGAGTCCCCACTGCTCCAGCTTGGCTTCCTACATACATGCTTATCAAGTCAGAGAAGCTCAATTATGAGAGACTATAA

Protein sequence

>Msa0377990

MAFCVTLCYYTSFPSLSHFSKTLTRKHVRSSFPLIRAVQDGEPGGSTQPQTKSSDASSASSSSAQSSTTAPKTLPKKPVYSMKKGQIVRVDKEKYLNSINYLSVGHPPYYKGLDYIYEDRGEVLDMRIFETGEHALVAWVGVPTAPAWLPTYMLIKSEKLNYERL*