AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1134800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134800 MtrunA17_Chr7g0215351 94.152 171 10 0 11 181 11 181 4.71e-124 347
Msa1134800 MtrunA17_Chr7g0215381 93.567 171 11 0 11 181 11 181 9.09e-124 346
Msa1134800 MtrunA17_Chr7g0215421 94.152 171 10 0 11 181 11 181 9.19e-124 346
Msa1134800 MtrunA17_Chr7g0215361 94.118 170 10 0 12 181 12 181 2.07e-123 345
Msa1134800 MtrunA17_Chr7g0215431 93.529 170 11 0 12 181 12 181 3.44e-122 342
Msa1134800 MtrunA17_Chr6g0457471 84.358 179 27 1 4 181 2 180 7.05e-114 321
Msa1134800 MtrunA17_Chr6g0457461 83.799 179 25 2 4 181 2 177 2.80e-111 314
Msa1134800 MtrunA17_Chr4g0072241 48.810 168 81 4 17 180 3 169 7.15e-58 179
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1134800 AT1G67090.1 70.879 182 48 2 1 181 1 178 5.19e-93 268
Msa1134800 AT5G38430.1 70.330 182 49 2 1 181 1 178 4.50e-92 266
Msa1134800 AT5G38430.2 70.330 182 49 2 1 181 1 178 4.50e-92 266
Msa1134800 AT5G38410.1 69.780 182 50 2 1 181 1 178 9.80e-92 265
Msa1134800 AT5G38420.1 69.780 182 50 2 1 181 1 178 2.81e-91 264
Msa1134800 AT5G38410.3 67.914 187 50 3 1 181 1 183 1.79e-89 260
Msa1134800 AT5G38410.2 67.033 182 48 3 1 181 1 171 6.76e-85 248
Msa1134800 AT1G67090.2 64.348 115 36 2 1 114 1 111 8.01e-45 145

Find 63 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTCTTAATATTGTGGTAAT+TGG 0.181671 7_4:-1452768 None:intergenic
AAGAAGTTGATTACCTTATA+AGG 0.244592 7_4:+1453317 Msa1134800:CDS
AAATCTAACAAGTTGGTATT+AGG 0.269347 7_4:+1452739 None:intergenic
CAACCCATCCCTTCCTTATA+AGG 0.273690 7_4:-1453330 None:intergenic
CTAAAACTTGCTATATATAA+TGG 0.294582 7_4:-1452826 None:intergenic
GGTAAAGATGAGAATGAATT+AGG 0.306324 7_4:-1454006 None:intergenic
TCTTTGTTGATCTTTGTAAC+TGG 0.311725 7_4:-1453015 None:intergenic
TTTCTTTAATATCATACTAT+TGG 0.318252 7_4:-1453966 None:intergenic
CAATATTAAGACCATAATAT+TGG 0.334349 7_4:+1452778 Msa1134800:five_prime_UTR
GAAGGGATGGGTTGCTTGCT+TGG 0.368783 7_4:+1453339 Msa1134800:CDS
GATACTATGATGGACGTTAC+TGG 0.371866 7_4:+1453540 Msa1134800:CDS
CGATTCTTCTCAAGTGTTGA+AGG 0.396980 7_4:+1453595 Msa1134800:CDS
ACCATTGACCAGAGAACAAT+TGG 0.397843 7_4:+1453291 Msa1134800:CDS
ATGTGGAAGTTGCCTTTGTT+TGG 0.411503 7_4:+1453566 Msa1134800:CDS
GCCAATTGTTCTCTGGTCAA+TGG 0.416317 7_4:-1453292 None:intergenic
GATTTCGAAATGCAAATGTA+TGG 0.417795 7_4:+1453838 Msa1134800:three_prime_UTR
TCTTCCACCATTGCTTGTAA+TGG 0.422658 7_4:-1453046 None:intergenic
TACAGTTAACCGTGCCTCTT+CGG 0.432912 7_4:+1452939 Msa1134800:CDS
TCAAACTTCTTCTTGCCAAT+AGG 0.435806 7_4:-1453250 None:intergenic
ATGATACGGACAAAGGCATC+AGG 0.443523 7_4:-1453644 None:intergenic
TTCAAGTTCAAGCCATTACA+AGG 0.460492 7_4:-1453924 None:intergenic
CTTCAACACTTGAGAAGAAT+CGG 0.461194 7_4:-1453594 None:intergenic
GGCGCGGCGGCTCCATTCGT+TGG 0.461846 7_4:+1452970 Msa1134800:CDS
TAATCACTCTCTGCTGCCAT+TGG 0.470602 7_4:+1453746 Msa1134800:three_prime_UTR
GATGCCTTTGTCCGTATCAT+CGG 0.484184 7_4:+1453647 Msa1134800:CDS
CTTTGTTGATCTTTGTAACT+GGG 0.495423 7_4:-1453014 None:intergenic
CTCAAAATTTAGTAGACTGC+AGG 0.495678 7_4:-1453719 None:intergenic
ATTACCTTATAAGGAAGGGA+TGG 0.507588 7_4:+1453326 Msa1134800:CDS
AACTTCTTCTTGCCAATAGG+AGG 0.515017 7_4:-1453247 None:intergenic
AGTTGATTACCTTATAAGGA+AGG 0.522099 7_4:+1453321 Msa1134800:CDS
CGTGCCTCTTCGGTACAATC+CGG 0.524408 7_4:+1452949 Msa1134800:CDS
AACGAATGGAGCCGCCGCGC+CGG 0.525589 7_4:-1452968 None:intergenic
ATATTATGGTCTTAATATTG+TGG 0.527737 7_4:-1452775 None:intergenic
ATTACTTCCATTACAAGCAA+TGG 0.539617 7_4:+1453039 Msa1134800:CDS
CATAGTATCCTGGTGACTTG+TGG 0.542155 7_4:-1453526 None:intergenic
CGTGAGAACCACAAGTCACC+AGG 0.544938 7_4:+1453518 Msa1134800:CDS
GTTGGACTAAAGTCCATGGC+TGG 0.555609 7_4:+1452988 Msa1134800:CDS
TTACCTTATAAGGAAGGGAT+GGG 0.559428 7_4:+1453327 Msa1134800:CDS
AGCTGAAGAGGACATGATAG+AGG 0.561007 7_4:-1452911 None:intergenic
CTTGAAACTTTAAATAACAA+AGG 0.567264 7_4:+1453941 Msa1134800:three_prime_UTR
GTTGATTACCTTATAAGGAA+GGG 0.567383 7_4:+1453322 Msa1134800:CDS
TAACGTCCATCATAGTATCC+TGG 0.569613 7_4:-1453536 None:intergenic
AAGTCACCAGGATACTATGA+TGG 0.574009 7_4:+1453530 Msa1134800:CDS
CGTTGTCGAATCCGATGATA+CGG 0.579522 7_4:-1453658 None:intergenic
CTGGTGACTTGTGGTTCTCA+CGG 0.595328 7_4:-1453517 None:intergenic
AACTGTAGTCACAGCTGAAG+AGG 0.597051 7_4:-1452923 None:intergenic
GAATCGGTTGCTCCAAACAA+AGG 0.598394 7_4:-1453578 None:intergenic
AAAGATGAGAATGAATTAGG+TGG 0.603747 7_4:-1454003 None:intergenic
ATTCGTTGGACTAAAGTCCA+TGG 0.609669 7_4:+1452984 Msa1134800:CDS
ACTTCCATTACAAGCAATGG+TGG 0.610706 7_4:+1453042 Msa1134800:CDS
TTGCTTGGAATTTGAGACCG+AGG 0.613015 7_4:+1453354 Msa1134800:CDS
TGTAACTGGGAAGCCAGCCA+TGG 0.615947 7_4:-1453001 None:intergenic
GTTCTCTGGTCAATGGTGGA+AGG 0.618328 7_4:-1453285 None:intergenic
ATGGACTTTAGTCCAACGAA+TGG 0.623442 7_4:-1452982 None:intergenic
AATTGTTCTCTGGTCAATGG+TGG 0.637841 7_4:-1453289 None:intergenic
CGGATTGTACCGAAGAGGCA+CGG 0.641462 7_4:-1452948 None:intergenic
TGGAAGAGTAAACTGCATGC+AGG 0.652563 7_4:+1453062 Msa1134800:CDS
CGCGCCGGATTGTACCGAAG+AGG 0.655843 7_4:-1452953 None:intergenic
TGATACGGACAAAGGCATCA+GGG 0.656050 7_4:-1453643 None:intergenic
TTCGGTACAATCCGGCGCGG+CGG 0.679004 7_4:+1452957 Msa1134800:CDS
GAATCCGATGATACGGACAA+AGG 0.687909 7_4:-1453651 None:intergenic
CTCTTCGGTACAATCCGGCG+CGG 0.688447 7_4:+1452954 Msa1134800:CDS
ATGGACGTTACTGGACAATG+TGG 0.742197 7_4:+1453549 Msa1134800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCTATTTCCAATATTA+TGG - chr7_4:1452792-1452811 None:intergenic 15.0%
!! TTTCTTTAATATCATACTAT+TGG - chr7_4:1453969-1453988 None:intergenic 15.0%
!!! TTTTTCTATTTCCAATATTA+TGG - chr7_4:1452792-1452811 None:intergenic 15.0%
!! TTTCTTTAATATCATACTAT+TGG - chr7_4:1453969-1453988 None:intergenic 15.0%
!!! ATATTATGGTCTTAATATTG+TGG - chr7_4:1452778-1452797 None:intergenic 20.0%
!! CAATATTAAGACCATAATAT+TGG + chr7_4:1452778-1452797 Msa1134800:five_prime_UTR 20.0%
!!! CTAAAACTTGCTATATATAA+TGG - chr7_4:1452829-1452848 None:intergenic 20.0%
!! CTTGAAACTTTAAATAACAA+AGG + chr7_4:1453941-1453960 Msa1134800:three_prime_UTR 20.0%
!!! ATATTATGGTCTTAATATTG+TGG - chr7_4:1452778-1452797 None:intergenic 20.0%
!! CAATATTAAGACCATAATAT+TGG + chr7_4:1452778-1452797 Msa1134800:five_prime_UTR 20.0%
!!! CTAAAACTTGCTATATATAA+TGG - chr7_4:1452829-1452848 None:intergenic 20.0%
!! CTTGAAACTTTAAATAACAA+AGG + chr7_4:1453941-1453960 Msa1134800:three_prime_UTR 20.0%
! CTTGTGAACTAAGAAAAAAA+TGG + chr7_4:1452885-1452904 Msa1134800:exon 25.0%
!! TATATTTTCATAAGCTCTTC+AGG + chr7_4:1453126-1453145 Msa1134800:intron 25.0%
! ATAAGCACTTATAGATTCAT+TGG + chr7_4:1453177-1453196 Msa1134800:intron 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr7_4:1453317-1453336 Msa1134800:CDS 25.0%
! AGTAAAGTAATATTAGACCT+CGG - chr7_4:1453374-1453393 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG + chr7_4:1453470-1453489 Msa1134800:intron 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG - chr7_4:1453765-1453784 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG + chr7_4:1453803-1453822 Msa1134800:three_prime_UTR 25.0%
! CTTGTGAACTAAGAAAAAAA+TGG + chr7_4:1452885-1452904 Msa1134800:exon 25.0%
!! TATATTTTCATAAGCTCTTC+AGG + chr7_4:1453126-1453145 Msa1134800:intron 25.0%
! ATAAGCACTTATAGATTCAT+TGG + chr7_4:1453177-1453196 Msa1134800:intron 25.0%
!! AAGAAGTTGATTACCTTATA+AGG + chr7_4:1453317-1453336 Msa1134800:CDS 25.0%
! AGTAAAGTAATATTAGACCT+CGG - chr7_4:1453374-1453393 None:intergenic 25.0%
!!! TGTTTGTTTTGATTTGTACT+TGG + chr7_4:1453470-1453489 Msa1134800:intron 25.0%
! AGAAAAAAATGTTCTTCCAA+TGG - chr7_4:1453765-1453784 None:intergenic 25.0%
!!! TTATGTCTTCCTTTGTTTTT+TGG + chr7_4:1453803-1453822 Msa1134800:three_prime_UTR 25.0%
GGTCTTAATATTGTGGTAAT+TGG - chr7_4:1452771-1452790 None:intergenic 30.0%
CTTTGTTGATCTTTGTAACT+GGG - chr7_4:1453017-1453036 None:intergenic 30.0%
TCTTTGTTGATCTTTGTAAC+TGG - chr7_4:1453018-1453037 None:intergenic 30.0%
ATTACTTCCATTACAAGCAA+TGG + chr7_4:1453039-1453058 Msa1134800:CDS 30.0%
!!! ACAAGTTTGTTAACCCTTTT+GGG + chr7_4:1453209-1453228 Msa1134800:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr7_4:1453321-1453340 Msa1134800:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr7_4:1453322-1453341 Msa1134800:CDS 30.0%
AAGCGAAAACCAAAAAACAA+AGG - chr7_4:1453815-1453834 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG + chr7_4:1453816-1453835 Msa1134800:three_prime_UTR 30.0%
GATTTCGAAATGCAAATGTA+TGG + chr7_4:1453838-1453857 Msa1134800:three_prime_UTR 30.0%
!!! ATATGCTGTTTTCCTTGTAA+TGG + chr7_4:1453912-1453931 Msa1134800:three_prime_UTR 30.0%
AAAGATGAGAATGAATTAGG+TGG - chr7_4:1454006-1454025 None:intergenic 30.0%
GGTAAAGATGAGAATGAATT+AGG - chr7_4:1454009-1454028 None:intergenic 30.0%
GGTCTTAATATTGTGGTAAT+TGG - chr7_4:1452771-1452790 None:intergenic 30.0%
CTTTGTTGATCTTTGTAACT+GGG - chr7_4:1453017-1453036 None:intergenic 30.0%
TCTTTGTTGATCTTTGTAAC+TGG - chr7_4:1453018-1453037 None:intergenic 30.0%
ATTACTTCCATTACAAGCAA+TGG + chr7_4:1453039-1453058 Msa1134800:CDS 30.0%
!!! ACAAGTTTGTTAACCCTTTT+GGG + chr7_4:1453209-1453228 Msa1134800:intron 30.0%
AGTTGATTACCTTATAAGGA+AGG + chr7_4:1453321-1453340 Msa1134800:CDS 30.0%
GTTGATTACCTTATAAGGAA+GGG + chr7_4:1453322-1453341 Msa1134800:CDS 30.0%
AAGCGAAAACCAAAAAACAA+AGG - chr7_4:1453815-1453834 None:intergenic 30.0%
!!! TGTTTTTTGGTTTTCGCTTT+CGG + chr7_4:1453816-1453835 Msa1134800:three_prime_UTR 30.0%
GATTTCGAAATGCAAATGTA+TGG + chr7_4:1453838-1453857 Msa1134800:three_prime_UTR 30.0%
!!! ATATGCTGTTTTCCTTGTAA+TGG + chr7_4:1453912-1453931 Msa1134800:three_prime_UTR 30.0%
AAAGATGAGAATGAATTAGG+TGG - chr7_4:1454006-1454025 None:intergenic 30.0%
GGTAAAGATGAGAATGAATT+AGG - chr7_4:1454009-1454028 None:intergenic 30.0%
!!! CACAAGTTTGTTAACCCTTT+TGG + chr7_4:1453208-1453227 Msa1134800:intron 35.0%
! TAACCCTTTTGGGCAATTTT+AGG + chr7_4:1453219-1453238 Msa1134800:intron 35.0%
ACACCTAAAATTGCCCAAAA+GGG - chr7_4:1453225-1453244 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr7_4:1453253-1453272 None:intergenic 35.0%
! TTCTTTTGCCAATTGTTCTC+TGG - chr7_4:1453302-1453321 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr7_4:1453326-1453345 Msa1134800:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr7_4:1453327-1453346 Msa1134800:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr7_4:1453597-1453616 None:intergenic 35.0%
CTCAAAATTTAGTAGACTGC+AGG - chr7_4:1453722-1453741 None:intergenic 35.0%
! TTCAAGTTCAAGCCATTACA+AGG - chr7_4:1453927-1453946 None:intergenic 35.0%
!!! CACAAGTTTGTTAACCCTTT+TGG + chr7_4:1453208-1453227 Msa1134800:intron 35.0%
! TAACCCTTTTGGGCAATTTT+AGG + chr7_4:1453219-1453238 Msa1134800:intron 35.0%
ACACCTAAAATTGCCCAAAA+GGG - chr7_4:1453225-1453244 None:intergenic 35.0%
TCAAACTTCTTCTTGCCAAT+AGG - chr7_4:1453253-1453272 None:intergenic 35.0%
! TTCTTTTGCCAATTGTTCTC+TGG - chr7_4:1453302-1453321 None:intergenic 35.0%
ATTACCTTATAAGGAAGGGA+TGG + chr7_4:1453326-1453345 Msa1134800:CDS 35.0%
TTACCTTATAAGGAAGGGAT+GGG + chr7_4:1453327-1453346 Msa1134800:CDS 35.0%
CTTCAACACTTGAGAAGAAT+CGG - chr7_4:1453597-1453616 None:intergenic 35.0%
CTCAAAATTTAGTAGACTGC+AGG - chr7_4:1453722-1453741 None:intergenic 35.0%
! TTCAAGTTCAAGCCATTACA+AGG - chr7_4:1453927-1453946 None:intergenic 35.0%
ATGGACTTTAGTCCAACGAA+TGG - chr7_4:1452985-1453004 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG + chr7_4:1452984-1453003 Msa1134800:CDS 40.0%
ACTTCCATTACAAGCAATGG+TGG + chr7_4:1453042-1453061 Msa1134800:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr7_4:1453049-1453068 None:intergenic 40.0%
CACACCTAAAATTGCCCAAA+AGG - chr7_4:1453226-1453245 None:intergenic 40.0%
!! CTTTTGGGCAATTTTAGGTG+TGG + chr7_4:1453224-1453243 Msa1134800:intron 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr7_4:1453250-1453269 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_4:1453292-1453311 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_4:1453291-1453310 Msa1134800:CDS 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr7_4:1453439-1453458 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG + chr7_4:1453485-1453504 Msa1134800:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr7_4:1453530-1453549 Msa1134800:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr7_4:1453539-1453558 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr7_4:1453540-1453559 Msa1134800:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr7_4:1453566-1453585 Msa1134800:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr7_4:1453595-1453614 Msa1134800:CDS 40.0%
ATGGACTTTAGTCCAACGAA+TGG - chr7_4:1452985-1453004 None:intergenic 40.0%
ATTCGTTGGACTAAAGTCCA+TGG + chr7_4:1452984-1453003 Msa1134800:CDS 40.0%
ACTTCCATTACAAGCAATGG+TGG + chr7_4:1453042-1453061 Msa1134800:CDS 40.0%
TCTTCCACCATTGCTTGTAA+TGG - chr7_4:1453049-1453068 None:intergenic 40.0%
CACACCTAAAATTGCCCAAA+AGG - chr7_4:1453226-1453245 None:intergenic 40.0%
!! CTTTTGGGCAATTTTAGGTG+TGG + chr7_4:1453224-1453243 Msa1134800:intron 40.0%
AACTTCTTCTTGCCAATAGG+AGG - chr7_4:1453250-1453269 None:intergenic 40.0%
AATTGTTCTCTGGTCAATGG+TGG - chr7_4:1453292-1453311 None:intergenic 40.0%
ACCATTGACCAGAGAACAAT+TGG + chr7_4:1453291-1453310 Msa1134800:CDS 40.0%
CAAATTTGTGACTGTGACCT+TGG - chr7_4:1453439-1453458 None:intergenic 40.0%
GTACTTGGTTACTTGCAGAA+AGG + chr7_4:1453485-1453504 Msa1134800:intron 40.0%
AAGTCACCAGGATACTATGA+TGG + chr7_4:1453530-1453549 Msa1134800:CDS 40.0%
TAACGTCCATCATAGTATCC+TGG - chr7_4:1453539-1453558 None:intergenic 40.0%
!! GATACTATGATGGACGTTAC+TGG + chr7_4:1453540-1453559 Msa1134800:CDS 40.0%
ATGTGGAAGTTGCCTTTGTT+TGG + chr7_4:1453566-1453585 Msa1134800:CDS 40.0%
!! CGATTCTTCTCAAGTGTTGA+AGG + chr7_4:1453595-1453614 Msa1134800:CDS 40.0%
AGCTGAAGAGGACATGATAG+AGG - chr7_4:1452914-1452933 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr7_4:1452926-1452945 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr7_4:1452939-1452958 Msa1134800:CDS 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_4:1453062-1453081 Msa1134800:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr7_4:1453235-1453254 Msa1134800:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_4:1453295-1453314 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_4:1453333-1453352 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr7_4:1453354-1453373 Msa1134800:CDS 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr7_4:1453529-1453548 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr7_4:1453549-1453568 Msa1134800:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr7_4:1453581-1453600 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_4:1453646-1453665 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_4:1453647-1453666 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_4:1453647-1453666 Msa1134800:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_4:1453654-1453673 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_4:1453661-1453680 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG + chr7_4:1453746-1453765 Msa1134800:three_prime_UTR 45.0%
AGCTGAAGAGGACATGATAG+AGG - chr7_4:1452914-1452933 None:intergenic 45.0%
AACTGTAGTCACAGCTGAAG+AGG - chr7_4:1452926-1452945 None:intergenic 45.0%
TACAGTTAACCGTGCCTCTT+CGG + chr7_4:1452939-1452958 Msa1134800:CDS 45.0%
TGGAAGAGTAAACTGCATGC+AGG + chr7_4:1453062-1453081 Msa1134800:CDS 45.0%
!! TTTTAGGTGTGGCCTCCTAT+TGG + chr7_4:1453235-1453254 Msa1134800:intron 45.0%
GCCAATTGTTCTCTGGTCAA+TGG - chr7_4:1453295-1453314 None:intergenic 45.0%
CAACCCATCCCTTCCTTATA+AGG - chr7_4:1453333-1453352 None:intergenic 45.0%
! TTGCTTGGAATTTGAGACCG+AGG + chr7_4:1453354-1453373 Msa1134800:CDS 45.0%
CATAGTATCCTGGTGACTTG+TGG - chr7_4:1453529-1453548 None:intergenic 45.0%
ATGGACGTTACTGGACAATG+TGG + chr7_4:1453549-1453568 Msa1134800:CDS 45.0%
GAATCGGTTGCTCCAAACAA+AGG - chr7_4:1453581-1453600 None:intergenic 45.0%
!! TGATACGGACAAAGGCATCA+GGG - chr7_4:1453646-1453665 None:intergenic 45.0%
!! ATGATACGGACAAAGGCATC+AGG - chr7_4:1453647-1453666 None:intergenic 45.0%
GATGCCTTTGTCCGTATCAT+CGG + chr7_4:1453647-1453666 Msa1134800:CDS 45.0%
GAATCCGATGATACGGACAA+AGG - chr7_4:1453654-1453673 None:intergenic 45.0%
CGTTGTCGAATCCGATGATA+CGG - chr7_4:1453661-1453680 None:intergenic 45.0%
TAATCACTCTCTGCTGCCAT+TGG + chr7_4:1453746-1453765 Msa1134800:three_prime_UTR 45.0%
GTTGGACTAAAGTCCATGGC+TGG + chr7_4:1452988-1453007 Msa1134800:CDS 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr7_4:1453288-1453307 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG + chr7_4:1453419-1453438 Msa1134800:intron 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr7_4:1453520-1453539 None:intergenic 50.0%
GTTGGACTAAAGTCCATGGC+TGG + chr7_4:1452988-1453007 Msa1134800:CDS 50.0%
! GTTCTCTGGTCAATGGTGGA+AGG - chr7_4:1453288-1453307 None:intergenic 50.0%
!! TCGTTGTTTTGTCGCGACCA+AGG + chr7_4:1453419-1453438 Msa1134800:intron 50.0%
! CTGGTGACTTGTGGTTCTCA+CGG - chr7_4:1453520-1453539 None:intergenic 50.0%
CGGATTGTACCGAAGAGGCA+CGG - chr7_4:1452951-1452970 None:intergenic 55.0%
CGTGCCTCTTCGGTACAATC+CGG + chr7_4:1452949-1452968 Msa1134800:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr7_4:1453004-1453023 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr7_4:1453339-1453358 Msa1134800:CDS 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr7_4:1453518-1453537 Msa1134800:CDS 55.0%
CGGATTGTACCGAAGAGGCA+CGG - chr7_4:1452951-1452970 None:intergenic 55.0%
CGTGCCTCTTCGGTACAATC+CGG + chr7_4:1452949-1452968 Msa1134800:CDS 55.0%
TGTAACTGGGAAGCCAGCCA+TGG - chr7_4:1453004-1453023 None:intergenic 55.0%
!! GAAGGGATGGGTTGCTTGCT+TGG + chr7_4:1453339-1453358 Msa1134800:CDS 55.0%
CGTGAGAACCACAAGTCACC+AGG + chr7_4:1453518-1453537 Msa1134800:CDS 55.0%
CTCTTCGGTACAATCCGGCG+CGG + chr7_4:1452954-1452973 Msa1134800:CDS 60.0%
CTCTTCGGTACAATCCGGCG+CGG + chr7_4:1452954-1452973 Msa1134800:CDS 60.0%
CGCGCCGGATTGTACCGAAG+AGG - chr7_4:1452956-1452975 None:intergenic 65.0%
TTCGGTACAATCCGGCGCGG+CGG + chr7_4:1452957-1452976 Msa1134800:CDS 65.0%
CGCGCCGGATTGTACCGAAG+AGG - chr7_4:1452956-1452975 None:intergenic 65.0%
TTCGGTACAATCCGGCGCGG+CGG + chr7_4:1452957-1452976 Msa1134800:CDS 65.0%
AACGAATGGAGCCGCCGCGC+CGG - chr7_4:1452971-1452990 None:intergenic 70.0%
AACGAATGGAGCCGCCGCGC+CGG - chr7_4:1452971-1452990 None:intergenic 70.0%
GGCGCGGCGGCTCCATTCGT+TGG + chr7_4:1452970-1452989 Msa1134800:CDS 75.0%
GGCGCGGCGGCTCCATTCGT+TGG + chr7_4:1452970-1452989 Msa1134800:CDS 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 1452741 1454030 1452741 ID=Msa1134800;Name=Msa1134800
chr7_4 mRNA 1452741 1454030 1452741 ID=Msa1134800-mRNA-1;Parent=Msa1134800;Name=Msa1134800-mRNA-1;_AED=0.39;_eAED=0.39;_QI=163|1|1|1|1|1|3|297|181
chr7_4 exon 1452741 1453083 1452741 ID=Msa1134800-mRNA-1:exon:536;Parent=Msa1134800-mRNA-1
chr7_4 exon 1453241 1453375 1453241 ID=Msa1134800-mRNA-1:exon:537;Parent=Msa1134800-mRNA-1
chr7_4 exon 1453503 1454030 1453503 ID=Msa1134800-mRNA-1:exon:538;Parent=Msa1134800-mRNA-1
chr7_4 five_prime_UTR 1452741 1452903 1452741 ID=Msa1134800-mRNA-1:five_prime_utr;Parent=Msa1134800-mRNA-1
chr7_4 CDS 1452904 1453083 1452904 ID=Msa1134800-mRNA-1:cds;Parent=Msa1134800-mRNA-1
chr7_4 CDS 1453241 1453375 1453241 ID=Msa1134800-mRNA-1:cds;Parent=Msa1134800-mRNA-1
chr7_4 CDS 1453503 1453733 1453503 ID=Msa1134800-mRNA-1:cds;Parent=Msa1134800-mRNA-1
chr7_4 three_prime_UTR 1453734 1454030 1453734 ID=Msa1134800-mRNA-1:three_prime_utr;Parent=Msa1134800-mRNA-1
Gene Sequence

>Msa1134800

ATGGCTTCCTCTATCATGTCCTCTTCAGCTGTGACTACAGTTAACCGTGCCTCTTCGGTACAATCCGGCGCGGCGGCTCCATTCGTTGGACTAAAGTCCATGGCTGGCTTCCCAGTTACAAAGATCAACAAAGACATTACTTCCATTACAAGCAATGGTGGAAGAGTAAACTGCATGCAGGTGTGGCCTCCTATTGGCAAGAAGAAGTTTGAGACTCTTTCATACCTTCCACCATTGACCAGAGAACAATTGGCAAAAGAAGTTGATTACCTTATAAGGAAGGGATGGGTTGCTTGCTTGGAATTTGAGACCGAGAAAGGATTTGTGTACCGTGAGAACCACAAGTCACCAGGATACTATGATGGACGTTACTGGACAATGTGGAAGTTGCCTTTGTTTGGAGCAACCGATTCTTCTCAAGTGTTGAAGGAGCTTGATGAAGCTATTGCTGCTTACCCTGATGCCTTTGTCCGTATCATCGGATTCGACAACGTTCGTCAAGTTCAATGCATCAGTTTCATTGCACACACACCTGCAGTCTACTAA

Protein sequence

>Msa1134800

MASSIMSSSAVTTVNRASSVQSGAAAPFVGLKSMAGFPVTKINKDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPPLTREQLAKEVDYLIRKGWVACLEFETEKGFVYRENHKSPGYYDGRYWTMWKLPLFGATDSSQVLKELDEAIAAYPDAFVRIIGFDNVRQVQCISFIAHTPAVY*