AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1363170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363170 MtrunA17_Chr4g0070091 97.297 222 5 1 1 222 1 221 7.80e-157 433
Msa1363170 MtrunA17_Chr7g0267151 30.052 193 113 6 51 222 38 229 2.92e-15 72.8
Msa1363170 MtrunA17_Chr1g0177361 31.410 156 95 4 78 222 77 231 7.36e-15 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1363170 AT3G26060.1 78.771 179 35 1 43 221 40 215 1.50e-99 288
Msa1363170 AT3G26060.2 78.333 180 35 2 43 221 40 216 1.19e-97 283
Msa1363170 AT3G26060.3 85.135 148 22 0 74 221 6 153 1.64e-94 273
Msa1363170 AT5G06290.2 34.177 158 88 5 78 222 83 237 4.14e-18 80.5
Msa1363170 AT5G06290.1 35.256 156 89 4 78 222 83 237 5.72e-18 80.5
Msa1363170 AT3G11630.1 33.974 156 91 4 78 222 76 230 6.79e-17 77.4

Find 83 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAAACAAGATTGGCTTTC+TGG 0.121852 tig0018025:+248316 None:intergenic
GTTGAGTTGGGGTGAGAATT+TGG 0.222433 tig0018025:-248344 Msa1363170:five_prime_UTR
TCATCACTCAACAAGGTAAA+TGG 0.285138 tig0018025:+246288 None:intergenic
AAGGGATACGGAAGCATTAA+AGG 0.286619 tig0018025:+246100 None:intergenic
CACAGGTTTCCCTTTGTACT+TGG 0.303836 tig0018025:+247803 None:intergenic
GGAGTGCCTGGCGATTTCTT+TGG 0.309530 tig0018025:-246240 Msa1363170:CDS
AAATGGAAGCTTGTACTTCT+TGG 0.312396 tig0018025:+246305 None:intergenic
CTTAATTACTAGGTTGAGTT+GGG 0.323258 tig0018025:-248356 Msa1363170:five_prime_UTR
TACGGAAGCATTAAAGGCTT+TGG 0.346601 tig0018025:+246106 None:intergenic
GATTTCTTTGGATCATTGCC+TGG 0.346798 tig0018025:-246228 Msa1363170:CDS
AATTGGTAGGGAGAGTGATC+AGG 0.347523 tig0018025:+248136 None:intergenic
ATAGTTACATACTTGAATTA+AGG 0.359749 tig0018025:+246074 None:intergenic
GCAGAGGTTGTTGGGATAAG+TGG 0.361226 tig0018025:-246427 Msa1363170:CDS
CTCTTCATCTTCCATGGCTA+AGG 0.389484 tig0018025:-248163 Msa1363170:CDS
GACTCACTGTCTTGCCATCC+TGG 0.400499 tig0018025:+247829 None:intergenic
CATACTTGAATTAAGGCAAA+AGG 0.409250 tig0018025:+246081 None:intergenic
CTTACCTGTTTGGTACAGCC+AGG 0.410343 tig0018025:+247750 None:intergenic
AAGCAGGAGCAGAGGTTGTT+GGG 0.412350 tig0018025:-246435 Msa1363170:CDS
AGGTGTAGAAGAAGTGGTTT+TGG 0.413165 tig0018025:+248011 None:intergenic
GAAAGCCAATCTTGTTTCGC+TGG 0.434729 tig0018025:-248313 Msa1363170:five_prime_UTR
AGAGTTACAACTTAATTACT+AGG 0.440665 tig0018025:-248366 None:intergenic
CAGCCAGGGGTCTCATCAGC+AGG 0.442678 tig0018025:+247765 None:intergenic
AAGGCTTTGGAGTAGTTTCA+AGG 0.453537 tig0018025:+246119 None:intergenic
ACTTTGCTCTTCATCTTCCA+TGG 0.463410 tig0018025:-248169 Msa1363170:CDS
AATAAATGTGGGGAAAGAAT+TGG 0.464668 tig0018025:+248119 None:intergenic
AGGAAAGAGTGGGGAGTGCC+TGG 0.465381 tig0018025:-246252 Msa1363170:CDS
AGAGGGAAAGTGTATACATT+GGG 0.465820 tig0018025:+248263 None:intergenic
AAAGCAGGAGCAGAGGTTGT+TGG 0.469493 tig0018025:-246436 Msa1363170:CDS
TACCCTGCTGATGAGACCCC+TGG 0.472668 tig0018025:-247768 Msa1363170:CDS
ACACCTTCTTCGTTCAAAAG+AGG 0.473477 tig0018025:-247994 Msa1363170:CDS
ATTGGTAGGGAGAGTGATCA+GGG 0.476674 tig0018025:+248137 None:intergenic
GACCCCTGGCTGTACCAAAC+AGG 0.480415 tig0018025:-247754 Msa1363170:intron
ACTTAATTACTAGGTTGAGT+TGG 0.489845 tig0018025:-248357 Msa1363170:five_prime_UTR
TGAAGCCAGCGAAACAAGAT+TGG 0.493039 tig0018025:+248308 None:intergenic
TTACCTGTTTGGTACAGCCA+GGG 0.504190 tig0018025:+247751 None:intergenic
TCTCTATCTATCACCCCAAA+AGG 0.504556 tig0018025:-248220 Msa1363170:five_prime_UTR
TATGAGAAGTTCAAGAAAGC+AGG 0.505377 tig0018025:-246451 Msa1363170:CDS
CGAAGAAGGTGTAGAAGAAG+TGG 0.514867 tig0018025:+248005 None:intergenic
ACAGTGTTTGTGATAATTGA+AGG 0.520796 tig0018025:+245924 None:intergenic
ATACTTGAATTAAGGCAAAA+GGG 0.521615 tig0018025:+246082 None:intergenic
GATAGATTATGATATGAGAG+AGG 0.526572 tig0018025:+248245 None:intergenic
TGAGTCTCTCCAAGTACAAA+GGG 0.527088 tig0018025:-247812 Msa1363170:CDS
TTTACCTTGTTGAGTGATGA+GGG 0.533791 tig0018025:-246285 Msa1363170:CDS
ATTTACCTTGTTGAGTGATG+AGG 0.534596 tig0018025:-246286 Msa1363170:CDS
GAATTAAGGCAAAAGGGATA+CGG 0.536094 tig0018025:+246088 None:intergenic
ACAAGATTGGCTTTCTGGCG+TGG 0.542842 tig0018025:+248321 None:intergenic
AATGATCCAAAGAAATCGCC+AGG 0.551351 tig0018025:+246234 None:intergenic
GCAAATGAGCAGGTGAGTAA+AGG 0.552307 tig0018025:-247882 Msa1363170:intron
ATTTCTTTGGATCATTGCCT+GGG 0.553738 tig0018025:-246227 Msa1363170:CDS
TGGTCTTTCAACGTGAAAGC+CGG 0.553851 tig0018025:+247849 None:intergenic
TAACAAGGTAAGGAAAGAGT+GGG 0.554128 tig0018025:-246262 Msa1363170:CDS
GGCTTTCACGTTGAAAGACC+AGG 0.554297 tig0018025:-247847 Msa1363170:CDS
GAGAGGGAAAGTGTATACAT+TGG 0.554364 tig0018025:+248262 None:intergenic
TATACATTGGGTTGAGTGGG+TGG 0.556458 tig0018025:+248275 None:intergenic
ATAGATTATGATATGAGAGA+GGG 0.563899 tig0018025:+248246 None:intergenic
AGTGTATACATTGGGTTGAG+TGG 0.565184 tig0018025:+248271 None:intergenic
GTTCAAGAAAGCAGGAGCAG+AGG 0.567377 tig0018025:-246443 Msa1363170:CDS
ATATGAATCCCTAAAAGCGC+AGG 0.567632 tig0018025:+246471 None:intergenic
GTGATGAGGGTAACAAGGTA+AGG 0.567983 tig0018025:-246272 Msa1363170:CDS
ATGTGGGGAAAGAATTGGTA+GGG 0.570965 tig0018025:+248124 None:intergenic
TACCTGTTTGGTACAGCCAG+GGG 0.571231 tig0018025:+247752 None:intergenic
GAGTAAAGGTTCAAAGCCAC+CGG 0.580619 tig0018025:-247868 Msa1363170:CDS
TGTTTGATCTCTATATGAGA+AGG 0.582902 tig0018025:+245975 None:intergenic
TCTTTCAACGTGAAAGCCGG+TGG 0.591762 tig0018025:+247852 None:intergenic
GTGTATACATTGGGTTGAGT+GGG 0.592798 tig0018025:+248272 None:intergenic
GTAACAAGGTAAGGAAAGAG+TGG 0.594096 tig0018025:-246263 Msa1363170:CDS
AATCAGCTACTTAATTACAA+TGG 0.604161 tig0018025:+246038 None:intergenic
GTGAGTCTCTCCAAGTACAA+AGG 0.604417 tig0018025:-247813 Msa1363170:CDS
GGGTAGAAATAAACAACCAC+AGG 0.604779 tig0018025:+247786 None:intergenic
GATCAGGGAAACCTTAGCCA+TGG 0.605970 tig0018025:+248152 None:intergenic
AGAACATAAGTCTCTCTCCC+AGG 0.610669 tig0018025:+246210 None:intergenic
TTAATTACTAGGTTGAGTTG+GGG 0.611650 tig0018025:-248355 Msa1363170:five_prime_UTR
TGGAAGAATGGGATAACTTG+AGG 0.612538 tig0018025:+248037 None:intergenic
ACAATTATAATGTCTCGCGA+TGG 0.616434 tig0018025:-245955 Msa1363170:three_prime_UTR
AATGTGGGGAAAGAATTGGT+AGG 0.616864 tig0018025:+248123 None:intergenic
GTTGAGTGATGAGGGTAACA+AGG 0.618582 tig0018025:-246277 Msa1363170:CDS
AACAAGGTAAGGAAAGAGTG+GGG 0.648925 tig0018025:-246261 Msa1363170:CDS
AGACGATTCTTCCTCTCACA+AGG 0.659575 tig0018025:-246404 Msa1363170:intron
AGCCAGGGGTCTCATCAGCA+GGG 0.668167 tig0018025:+247766 None:intergenic
GTTACCCTCATCACTCAACA+AGG 0.674521 tig0018025:+246281 None:intergenic
TTCACGTTGAAAGACCAGGA+TGG 0.687451 tig0018025:-247843 Msa1363170:CDS
CAAGTACAAAGGGAAACCTG+TGG 0.709350 tig0018025:-247802 Msa1363170:CDS
TTTGAGGGTGAATAAATGTG+GGG 0.731556 tig0018025:+248109 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATGTTTATAATCCATAAA+TGG - tig0018025:246543-246562 Msa1363170:intron 15.0%
!! AAAAAATTGTTTACCTAAAT+AGG - tig0018025:247289-247308 Msa1363170:intron 15.0%
!! AATAATCAGTAGATAAATAT+TGG + tig0018025:247584-247603 None:intergenic 15.0%
!!! TTTTATGAATTTATTATTGC+AGG - tig0018025:247735-247754 Msa1363170:intron 15.0%
!! CCAAAAAATAAAGAATTGAA+TGG + tig0018025:246172-246191 None:intergenic 20.0%
!!! CCATTCAATTCTTTATTTTT+TGG - tig0018025:246169-246188 Msa1363170:CDS 20.0%
!!! TCATAACTACTTTTTGTAAT+AGG - tig0018025:246861-246880 Msa1363170:intron 20.0%
!!! TGATATAATTGATTCCAATA+TGG - tig0018025:247651-247670 Msa1363170:intron 20.0%
!!! CAATGTATTGGTTAATTAAT+TGG + tig0018025:247885-247904 None:intergenic 20.0%
!! ATAGTTACATACTTGAATTA+AGG + tig0018025:248158-248177 None:intergenic 20.0%
! ATAGATTATGATATGAGAGA+GGG + tig0018025:245986-246005 None:intergenic 25.0%
!! TTACGTTTTCTTTTCCTTTT+GGG + tig0018025:246026-246045 None:intergenic 25.0%
! AAACAATGCATATCCATTTA+TGG + tig0018025:246559-246578 None:intergenic 25.0%
! ATTGTTTGTTCTAGTGAAAA+GGG - tig0018025:246572-246591 Msa1363170:intron 25.0%
! TTATGTTAGATTGTTAGAGT+TGG - tig0018025:246621-246640 Msa1363170:intron 25.0%
! TAACTAATTAACTTCCCAAA+AGG + tig0018025:246789-246808 None:intergenic 25.0%
!!! TTTTGGGAAGTTAATTAGTT+AGG - tig0018025:246788-246807 Msa1363170:intron 25.0%
!!! AATTTGTTGGTTAAGTTAGT+CGG - tig0018025:246818-246837 Msa1363170:intron 25.0%
!! AAAATTAAGTCAGTGCTATT+AGG - tig0018025:247144-247163 Msa1363170:intron 25.0%
!! AAATTAAGTCAGTGCTATTA+GGG - tig0018025:247145-247164 Msa1363170:intron 25.0%
! ATGAATCAATAGATCATAGT+TGG - tig0018025:247189-247208 Msa1363170:intron 25.0%
!! ATCATAGTTGGTATATATGT+TGG - tig0018025:247201-247220 Msa1363170:intron 25.0%
!!! TAAAGCAATTCTAAAATGTG+TGG + tig0018025:247518-247537 None:intergenic 25.0%
!! AATTGATTCCAATATGGTAA+AGG - tig0018025:247657-247676 Msa1363170:intron 25.0%
! GCAAATACTTGATATAGTTA+AGG - tig0018025:247706-247725 Msa1363170:intron 25.0%
! ACTTATGTTCTTGACAAAAA+TGG - tig0018025:248031-248050 Msa1363170:CDS 25.0%
! ATACTTGAATTAAGGCAAAA+GGG + tig0018025:248150-248169 None:intergenic 25.0%
! AATCAGCTACTTAATTACAA+TGG + tig0018025:248194-248213 None:intergenic 25.0%
!! ATATCAGTATCTTTTGCATA+TGG - tig0018025:248331-248350 Msa1363170:five_prime_UTR 25.0%
! CTTAATTACTAGGTTGAGTT+GGG - tig0018025:245873-245892 Msa1363170:three_prime_UTR 30.0%
! TTAATTACTAGGTTGAGTTG+GGG - tig0018025:245874-245893 Msa1363170:three_prime_UTR 30.0%
GATAGATTATGATATGAGAG+AGG + tig0018025:245987-246006 None:intergenic 30.0%
! TACGTTTTCTTTTCCTTTTG+GGG + tig0018025:246025-246044 None:intergenic 30.0%
! GTTACGTTTTCTTTTCCTTT+TGG + tig0018025:246027-246046 None:intergenic 30.0%
AATAAATGTGGGGAAAGAAT+TGG + tig0018025:246113-246132 None:intergenic 30.0%
!! TTTTGAGGGTGAATAAATGT+GGG + tig0018025:246124-246143 None:intergenic 30.0%
!! GTGATGATGATATGTTTTGA+GGG + tig0018025:246138-246157 None:intergenic 30.0%
!! AGTGATGATGATATGTTTTG+AGG + tig0018025:246139-246158 None:intergenic 30.0%
! ATTGTGTGAATAAAGTACCT+TGG + tig0018025:246272-246291 None:intergenic 30.0%
CAATAAATTCAAAATGCAGG+TGG + tig0018025:246327-246346 None:intergenic 30.0%
! CACCTGCATTTTGAATTTAT+TGG - tig0018025:246325-246344 Msa1363170:intron 30.0%
TGCCAATAAATTCAAAATGC+AGG + tig0018025:246330-246349 None:intergenic 30.0%
!!! TTTTTTTCTCCTTACCTGTT+TGG + tig0018025:246492-246511 None:intergenic 30.0%
CATTGTTTGTTCTAGTGAAA+AGG - tig0018025:246571-246590 Msa1363170:intron 30.0%
! TGTTAGAGTTGGTTAGTATT+TGG - tig0018025:246632-246651 Msa1363170:intron 30.0%
ACATATGTACAAGACTTTCA+AGG + tig0018025:246992-247011 None:intergenic 30.0%
AAGACTAATATTCTGGGTAA+TGG + tig0018025:247046-247065 None:intergenic 30.0%
GATAGCAAGACTAATATTCT+GGG + tig0018025:247052-247071 None:intergenic 30.0%
AGATAGCAAGACTAATATTC+TGG + tig0018025:247053-247072 None:intergenic 30.0%
TCAACCATGCAACAATAATT+TGG - tig0018025:247072-247091 Msa1363170:intron 30.0%
CAACCATGCAACAATAATTT+GGG - tig0018025:247073-247092 Msa1363170:intron 30.0%
!! TGGTATATATGTTGGTTTAG+AGG - tig0018025:247209-247228 Msa1363170:intron 30.0%
AATATTCATTGTCATTGCAC+CGG + tig0018025:247252-247271 None:intergenic 30.0%
ATTGTTTACCTAAATAGGAC+AGG - tig0018025:247294-247313 Msa1363170:intron 30.0%
TTGTTTACCTAAATAGGACA+GGG - tig0018025:247295-247314 Msa1363170:intron 30.0%
!! TTTAGAGCTCGTTTTTAAAC+AGG - tig0018025:247331-247350 Msa1363170:intron 30.0%
!! TTAGAGCTCGTTTTTAAACA+GGG - tig0018025:247332-247351 Msa1363170:intron 30.0%
GAGAAATGAAATATTGCAGA+AGG + tig0018025:247496-247515 None:intergenic 30.0%
CTTCATAAACAACTACTGTT+AGG + tig0018025:247626-247645 None:intergenic 30.0%
CTAACAGTAGTTGTTTATGA+AGG - tig0018025:247624-247643 Msa1363170:intron 30.0%
CTACATTTCATGCAATGTAT+TGG + tig0018025:247897-247916 None:intergenic 30.0%
CAATACATTGCATGAAATGT+AGG - tig0018025:247895-247914 Msa1363170:intron 30.0%
CATACTTGAATTAAGGCAAA+AGG + tig0018025:248151-248170 None:intergenic 30.0%
TGTTTGATCTCTATATGAGA+AGG + tig0018025:248257-248276 None:intergenic 30.0%
ACAGTGTTTGTGATAATTGA+AGG + tig0018025:248308-248327 None:intergenic 30.0%
! AGAGGGAAAGTGTATACATT+GGG + tig0018025:245969-245988 None:intergenic 35.0%
TTTGAGGGTGAATAAATGTG+GGG + tig0018025:246123-246142 None:intergenic 35.0%
!!! GTTTTGAGGGTGAATAAATG+TGG + tig0018025:246125-246144 None:intergenic 35.0%
!!! GGTTTTGGAAATGGAAGAAT+GGG + tig0018025:246206-246225 None:intergenic 35.0%
!!! TGGTTTTGGAAATGGAAGAA+TGG + tig0018025:246207-246226 None:intergenic 35.0%
!!! AGAAGAAGTGGTTTTGGAAA+TGG + tig0018025:246215-246234 None:intergenic 35.0%
! AAACCTCTTTTGAACGAAGA+AGG + tig0018025:246241-246260 None:intergenic 35.0%
!! AAGAGGTTTCATTTTTGCCA+AGG - tig0018025:246252-246271 Msa1363170:CDS 35.0%
GAATTTATTGGCAAATGAGC+AGG - tig0018025:246337-246356 Msa1363170:intron 35.0%
! GAGTTGGTTAGTATTTGGAA+TGG - tig0018025:246637-246656 Msa1363170:intron 35.0%
! TGGTTAGTATTTGGAATGGA+TGG - tig0018025:246641-246660 Msa1363170:intron 35.0%
CACTCTTTCATCTCTTTACA+AGG + tig0018025:246908-246927 None:intergenic 35.0%
TGTACAAGACTTTCAAGGAA+AGG + tig0018025:246987-247006 None:intergenic 35.0%
GTTCCCAAATTATTGTTGCA+TGG + tig0018025:247079-247098 None:intergenic 35.0%
GCATTACTGCTAAGATATTG+TGG + tig0018025:247122-247141 None:intergenic 35.0%
GAAAAGGCTTCAAGCATTAT+CGG + tig0018025:247372-247391 None:intergenic 35.0%
! ATAATGCTTGAAGCCTTTTC+AGG - tig0018025:247372-247391 Msa1363170:intron 35.0%
!!! CCTGTTTTTACAGCTTTGTA+GGG - tig0018025:247403-247422 Msa1363170:intron 35.0%
ATTTGAGAACTCTTCTCATG+TGG + tig0018025:247556-247575 None:intergenic 35.0%
CAACTACTGTTAGGAATTAG+AGG + tig0018025:247617-247636 None:intergenic 35.0%
ATTCCAATATGGTAAAGGCA+TGG - tig0018025:247662-247681 Msa1363170:intron 35.0%
ATTCCATGCCTTTACCATAT+TGG + tig0018025:247668-247687 None:intergenic 35.0%
TATGAGAAGTTCAAGAAAGC+AGG - tig0018025:247778-247797 Msa1363170:CDS 35.0%
AAATGGAAGCTTGTACTTCT+TGG + tig0018025:247927-247946 None:intergenic 35.0%
TCATCACTCAACAAGGTAAA+TGG + tig0018025:247944-247963 None:intergenic 35.0%
ATTTACCTTGTTGAGTGATG+AGG - tig0018025:247943-247962 Msa1363170:intron 35.0%
TTTACCTTGTTGAGTGATGA+GGG - tig0018025:247944-247963 Msa1363170:intron 35.0%
TAACAAGGTAAGGAAAGAGT+GGG - tig0018025:247967-247986 Msa1363170:intron 35.0%
ATTTCTTTGGATCATTGCCT+GGG - tig0018025:248002-248021 Msa1363170:CDS 35.0%
GAATTAAGGCAAAAGGGATA+CGG + tig0018025:248144-248163 None:intergenic 35.0%
!! GTAGCTGATTTTGAACACTT+TGG - tig0018025:248204-248223 Msa1363170:five_prime_UTR 35.0%
ACAATTATAATGTCTCGCGA+TGG - tig0018025:248274-248293 Msa1363170:five_prime_UTR 35.0%
!! GTGTATACATTGGGTTGAGT+GGG + tig0018025:245960-245979 None:intergenic 40.0%
!! AGTGTATACATTGGGTTGAG+TGG + tig0018025:245961-245980 None:intergenic 40.0%
! GAGAGGGAAAGTGTATACAT+TGG + tig0018025:245970-245989 None:intergenic 40.0%
TCTCTATCTATCACCCCAAA+AGG - tig0018025:246009-246028 Msa1363170:three_prime_UTR 40.0%
ACTTTGCTCTTCATCTTCCA+TGG - tig0018025:246060-246079 Msa1363170:three_prime_UTR 40.0%
ATGTGGGGAAAGAATTGGTA+GGG + tig0018025:246108-246127 None:intergenic 40.0%
AATGTGGGGAAAGAATTGGT+AGG + tig0018025:246109-246128 None:intergenic 40.0%
TGGAAGAATGGGATAACTTG+AGG + tig0018025:246195-246214 None:intergenic 40.0%
! AGGTGTAGAAGAAGTGGTTT+TGG + tig0018025:246221-246240 None:intergenic 40.0%
ACACCTTCTTCGTTCAAAAG+AGG - tig0018025:246235-246254 Msa1363170:CDS 40.0%
TGAGTCTCTCCAAGTACAAA+GGG - tig0018025:246417-246436 Msa1363170:CDS 40.0%
GGGTAGAAATAAACAACCAC+AGG + tig0018025:246446-246465 None:intergenic 40.0%
TGTTCTAGTGAAAAGGGAAG+AGG - tig0018025:246578-246597 Msa1363170:intron 40.0%
TACTTCCCTTGTGTTAGTTC+TGG - tig0018025:246759-246778 Msa1363170:intron 40.0%
!!! TTAGTTCTGGCAGACCTTTT+GGG - tig0018025:246772-246791 Msa1363170:intron 40.0%
GTTAGGTCTCGTCAATTTGT+TGG - tig0018025:246805-246824 Msa1363170:intron 40.0%
! TGGGTAATGGCTGTTTGTTA+GGG + tig0018025:247033-247052 None:intergenic 40.0%
AACTTGATGTGCAGTTACTG+TGG - tig0018025:247096-247115 Msa1363170:intron 40.0%
ACATGATCCCTGTCCTATTT+AGG + tig0018025:247305-247324 None:intergenic 40.0%
!!! GCCTGTTTTTACAGCTTTGT+AGG - tig0018025:247402-247421 Msa1363170:intron 40.0%
CCCTACAAAGCTGTAAAAAC+AGG + tig0018025:247406-247425 None:intergenic 40.0%
! ATATGAATCCCTAAAAGCGC+AGG + tig0018025:247761-247780 None:intergenic 40.0%
TCCTCTCACAAGGTAAAACT+TGG - tig0018025:247835-247854 Msa1363170:CDS 40.0%
! TCCAAGTTTTACCTTGTGAG+AGG + tig0018025:247839-247858 None:intergenic 40.0%
GTAACAAGGTAAGGAAAGAG+TGG - tig0018025:247966-247985 Msa1363170:intron 40.0%
AACAAGGTAAGGAAAGAGTG+GGG - tig0018025:247968-247987 Msa1363170:intron 40.0%
AATGATCCAAAGAAATCGCC+AGG + tig0018025:247998-248017 None:intergenic 40.0%
GATTTCTTTGGATCATTGCC+TGG - tig0018025:248001-248020 Msa1363170:CDS 40.0%
!!! CATCGATATGCTTTTCAGGT+TGG + tig0018025:248087-248106 None:intergenic 40.0%
! GTCTCATCGATATGCTTTTC+AGG + tig0018025:248091-248110 None:intergenic 40.0%
!! AAGGCTTTGGAGTAGTTTCA+AGG + tig0018025:248113-248132 None:intergenic 40.0%
!! TACGGAAGCATTAAAGGCTT+TGG + tig0018025:248126-248145 None:intergenic 40.0%
!! AAGGGATACGGAAGCATTAA+AGG + tig0018025:248132-248151 None:intergenic 40.0%
!! GTTGAGTTGGGGTGAGAATT+TGG - tig0018025:245885-245904 Msa1363170:three_prime_UTR 45.0%
!! GCGAAACAAGATTGGCTTTC+TGG + tig0018025:245916-245935 None:intergenic 45.0%
! GAAAGCCAATCTTGTTTCGC+TGG - tig0018025:245916-245935 Msa1363170:three_prime_UTR 45.0%
TGAAGCCAGCGAAACAAGAT+TGG + tig0018025:245924-245943 None:intergenic 45.0%
!! TATACATTGGGTTGAGTGGG+TGG + tig0018025:245957-245976 None:intergenic 45.0%
CTCTTCATCTTCCATGGCTA+AGG - tig0018025:246066-246085 Msa1363170:three_prime_UTR 45.0%
ATTGGTAGGGAGAGTGATCA+GGG + tig0018025:246095-246114 None:intergenic 45.0%
AATTGGTAGGGAGAGTGATC+AGG + tig0018025:246096-246115 None:intergenic 45.0%
! CGAAGAAGGTGTAGAAGAAG+TGG + tig0018025:246227-246246 None:intergenic 45.0%
GCAAATGAGCAGGTGAGTAA+AGG - tig0018025:246347-246366 Msa1363170:intron 45.0%
GAGTAAAGGTTCAAAGCCAC+CGG - tig0018025:246361-246380 Msa1363170:intron 45.0%
TGGTCTTTCAACGTGAAAGC+CGG + tig0018025:246383-246402 None:intergenic 45.0%
TTCACGTTGAAAGACCAGGA+TGG - tig0018025:246386-246405 Msa1363170:intron 45.0%
GTGAGTCTCTCCAAGTACAA+AGG - tig0018025:246416-246435 Msa1363170:CDS 45.0%
CACAGGTTTCCCTTTGTACT+TGG + tig0018025:246429-246448 None:intergenic 45.0%
CAAGTACAAAGGGAAACCTG+TGG - tig0018025:246427-246446 Msa1363170:CDS 45.0%
TTACCTGTTTGGTACAGCCA+GGG + tig0018025:246481-246500 None:intergenic 45.0%
GTGAAAAGGGAAGAGGTGAA+TGG - tig0018025:246585-246604 Msa1363170:intron 45.0%
GTCTGCCAGAACTAACACAA+GGG + tig0018025:246767-246786 None:intergenic 45.0%
!!! GTTAGTTCTGGCAGACCTTT+TGG - tig0018025:246771-246790 Msa1363170:intron 45.0%
! CTGGGTAATGGCTGTTTGTT+AGG + tig0018025:247034-247053 None:intergenic 45.0%
! TAGAGGCACAAGAGTCAATG+TGG - tig0018025:247226-247245 Msa1363170:intron 45.0%
AGGCTTCAAGCATTATCGGA+CGG + tig0018025:247368-247387 None:intergenic 45.0%
AGCTGTAAAAACAGGCTACC+CGG + tig0018025:247398-247417 None:intergenic 45.0%
AGACGATTCTTCCTCTCACA+AGG - tig0018025:247825-247844 Msa1363170:CDS 45.0%
GTTACCCTCATCACTCAACA+AGG + tig0018025:247951-247970 None:intergenic 45.0%
GTTGAGTGATGAGGGTAACA+AGG - tig0018025:247952-247971 Msa1363170:intron 45.0%
GTGATGAGGGTAACAAGGTA+AGG - tig0018025:247957-247976 Msa1363170:intron 45.0%
AGAACATAAGTCTCTCTCCC+AGG + tig0018025:248022-248041 None:intergenic 45.0%
!! ACAAGATTGGCTTTCTGGCG+TGG + tig0018025:245911-245930 None:intergenic 50.0%
GATCAGGGAAACCTTAGCCA+TGG + tig0018025:246080-246099 None:intergenic 50.0%
TCTTTCAACGTGAAAGCCGG+TGG + tig0018025:246380-246399 None:intergenic 50.0%
GGCTTTCACGTTGAAAGACC+AGG - tig0018025:246382-246401 Msa1363170:intron 50.0%
TACCTGTTTGGTACAGCCAG+GGG + tig0018025:246480-246499 None:intergenic 50.0%
CTTACCTGTTTGGTACAGCC+AGG + tig0018025:246482-246501 None:intergenic 50.0%
CTGGCTGTACCAAACAGGTA+AGG - tig0018025:246480-246499 Msa1363170:intron 50.0%
GGTCTGCCAGAACTAACACA+AGG + tig0018025:246768-246787 None:intergenic 50.0%
GCTTCAAGCATTATCGGACG+GGG + tig0018025:247366-247385 None:intergenic 50.0%
GGCTTCAAGCATTATCGGAC+GGG + tig0018025:247367-247386 None:intergenic 50.0%
!! TGCTTGAAGCCTTTTCAGGC+CGG - tig0018025:247376-247395 Msa1363170:intron 50.0%
! CAGCTTTGTAGGGTCAACCT+CGG - tig0018025:247413-247432 Msa1363170:intron 50.0%
GATCTTCTACATCCTCACCG+AGG + tig0018025:247433-247452 None:intergenic 50.0%
! TATTGCAGGCCTGCGCTTTT+AGG - tig0018025:247749-247768 Msa1363170:intron 50.0%
! ATTGCAGGCCTGCGCTTTTA+GGG - tig0018025:247750-247769 Msa1363170:intron 50.0%
GTTCAAGAAAGCAGGAGCAG+AGG - tig0018025:247786-247805 Msa1363170:CDS 50.0%
AAAGCAGGAGCAGAGGTTGT+TGG - tig0018025:247793-247812 Msa1363170:CDS 50.0%
AAGCAGGAGCAGAGGTTGTT+GGG - tig0018025:247794-247813 Msa1363170:CDS 50.0%
GCAGAGGTTGTTGGGATAAG+TGG - tig0018025:247802-247821 Msa1363170:CDS 50.0%
GACTCACTGTCTTGCCATCC+TGG + tig0018025:246403-246422 None:intergenic 55.0%
GGCACAAGAGTCAATGTGGC+CGG - tig0018025:247230-247249 Msa1363170:intron 55.0%
!! GCTTGAAGCCTTTTCAGGCC+GGG - tig0018025:247377-247396 Msa1363170:intron 55.0%
TTGTAGGGTCAACCTCGGTG+AGG - tig0018025:247418-247437 Msa1363170:intron 55.0%
! GGAGTGCCTGGCGATTTCTT+TGG - tig0018025:247989-248008 Msa1363170:CDS 55.0%
TACCCTGCTGATGAGACCCC+TGG - tig0018025:246461-246480 Msa1363170:CDS 60.0%
AGCCAGGGGTCTCATCAGCA+GGG + tig0018025:246466-246485 None:intergenic 60.0%
GACCCCTGGCTGTACCAAAC+AGG - tig0018025:246475-246494 Msa1363170:CDS 60.0%
ACAGGCTACCCGGCCTGAAA+AGG + tig0018025:247388-247407 None:intergenic 60.0%
!! AGGAAAGAGTGGGGAGTGCC+TGG - tig0018025:247977-247996 Msa1363170:intron 60.0%
CAGCCAGGGGTCTCATCAGC+AGG + tig0018025:246467-246486 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0018025 gene 245873 248378 245873 ID=Msa1363170;Name=Msa1363170
tig0018025 mRNA 245873 248378 245873 ID=Msa1363170-mRNA-1;Parent=Msa1363170;Name=Msa1363170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=179|1|1|1|1|1|4|243|222
tig0018025 exon 245873 246334 245873 ID=Msa1363170-mRNA-1:exon:13413;Parent=Msa1363170-mRNA-1
tig0018025 exon 246405 246494 246405 ID=Msa1363170-mRNA-1:exon:13412;Parent=Msa1363170-mRNA-1
tig0018025 exon 247755 247892 247755 ID=Msa1363170-mRNA-1:exon:13411;Parent=Msa1363170-mRNA-1
tig0018025 exon 247978 248378 247978 ID=Msa1363170-mRNA-1:exon:13410;Parent=Msa1363170-mRNA-1
tig0018025 five_prime_UTR 248200 248378 248200 ID=Msa1363170-mRNA-1:five_prime_utr;Parent=Msa1363170-mRNA-1
tig0018025 CDS 247978 248199 247978 ID=Msa1363170-mRNA-1:cds;Parent=Msa1363170-mRNA-1
tig0018025 CDS 247755 247892 247755 ID=Msa1363170-mRNA-1:cds;Parent=Msa1363170-mRNA-1
tig0018025 CDS 246405 246494 246405 ID=Msa1363170-mRNA-1:cds;Parent=Msa1363170-mRNA-1
tig0018025 CDS 246116 246334 246116 ID=Msa1363170-mRNA-1:cds;Parent=Msa1363170-mRNA-1
tig0018025 three_prime_UTR 245873 246115 245873 ID=Msa1363170-mRNA-1:three_prime_utr;Parent=Msa1363170-mRNA-1
Gene Sequence

>Msa1363170

ATGTTATCACTTTGCTCTTCATCTTCCATGGCTAAGGTTTCCCTGATCACTCTCCCTACCAATTCTTTCCCCACATTTATTCACCCTCAAAACATATCATCATCACTTACTTCTACTCCATTCAATTCTTTATTTTTTGGCCTCAAGTTATCCCATTCTTCCATTTCCAAAACCACTTCTTCTACACCTTCTTCGTTCAAAAGAGGTTTCATTTTTGCCAAGGTGAGTAAAGGTTCAAAGCCACCGGCTTTCACGTTGAAAGACCAGGATGGCAAGACAGTGAGTCTCTCCAAGTACAAAGGGAAACCTGTGGTTGTTTATTTCTACCCTGCTGATGAGACCCCTGGCTGTACCAAACAGGCCTGCGCTTTTAGGGATTCATATGAGAAGTTCAAGAAAGCAGGAGCAGAGGTTGTTGGGATAAGTGGAGACGATTCTTCCTCTCACAAGGCATTTGCCAAGAAGTACAAGCTTCCATTTACCTTGTTGAGTGATGAGGGTAACAAGGTAAGGAAAGAGTGGGGAGTGCCTGGCGATTTCTTTGGATCATTGCCTGGGAGAGAGACTTATGTTCTTGACAAAAATGGTGTCGTTCAGCTTGTATACAACAATCAGTTCCAACCTGAAAAGCATATCGATGAGACCTTGAAACTACTCCAAAGCCTTTAA

Protein sequence

>Msa1363170

MLSLCSSSSMAKVSLITLPTNSFPTFIHPQNISSSLTSTPFNSLFFGLKLSHSSISKTTSSTPSSFKRGFIFAKVSKGSKPPAFTLKDQDGKTVSLSKYKGKPVVVYFYPADETPGCTKQACAFRDSYEKFKKAGAEVVGISGDDSSSHKAFAKKYKLPFTLLSDEGNKVRKEWGVPGDFFGSLPGRETYVLDKNGVVQLVYNNQFQPEKHIDETLKLLQSL*