Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386560 | XP_003603905.1 | 78.857 | 350 | 39 | 4 | 16 | 336 | 16 | 359 | 8.22e-173 | 494 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386560 | sp|P17772|OSS2_PEA | 46.429 | 196 | 70 | 3 | 15 | 208 | 17 | 179 | 3.56e-46 | 157 |
| Msa0386560 | sp|P17772|OSS2_PEA | 63.115 | 122 | 45 | 0 | 215 | 336 | 60 | 181 | 7.89e-44 | 152 |
| Msa0386560 | sp|P17772|OSS2_PEA | 44.706 | 170 | 87 | 2 | 143 | 312 | 17 | 179 | 1.08e-37 | 135 |
| Msa0386560 | sp|P17772|OSS2_PEA | 52.419 | 124 | 55 | 1 | 137 | 260 | 60 | 179 | 8.84e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386560 | G7J6J7 | 78.857 | 350 | 39 | 4 | 16 | 336 | 16 | 359 | 3.92e-173 | 494 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000370 | Msa0386560 | 0.861780 | 8.065869e-64 | -8.615850e-47 |
| Msa0013270 | Msa0386560 | 0.839001 | 2.057061e-57 | -8.615850e-47 |
| Msa0038530 | Msa0386560 | 0.808796 | 2.596631e-50 | -8.615850e-47 |
| Msa0044780 | Msa0386560 | -0.808228 | 3.433445e-50 | -8.615850e-47 |
| Msa0045810 | Msa0386560 | 0.852293 | 5.075578e-61 | -8.615850e-47 |
| Msa0046200 | Msa0386560 | 0.835681 | 1.456180e-56 | -8.615850e-47 |
| Msa0062190 | Msa0386560 | 0.814869 | 1.236804e-51 | -8.615850e-47 |
| Msa0072180 | Msa0386560 | 0.817144 | 3.839510e-52 | -8.615850e-47 |
| Msa0073110 | Msa0386560 | 0.808255 | 3.387488e-50 | -8.615850e-47 |
| Msa0106540 | Msa0386560 | 0.844918 | 5.613505e-59 | -8.615850e-47 |
| Msa0120450 | Msa0386560 | 0.820150 | 7.984964e-53 | -8.615850e-47 |
| Msa0132700 | Msa0386560 | 0.816494 | 5.373903e-52 | -8.615850e-47 |
| Msa0137010 | Msa0386560 | -0.800994 | 1.109985e-48 | -8.615850e-47 |
| Msa0139500 | Msa0386560 | 0.832220 | 1.070219e-55 | -8.615850e-47 |
| Msa0189720 | Msa0386560 | 0.823886 | 1.088122e-53 | -8.615850e-47 |
| Msa0203880 | Msa0386560 | 0.802114 | 6.542851e-49 | -8.615850e-47 |
| Msa0206370 | Msa0386560 | 0.857948 | 1.152470e-62 | -8.615850e-47 |
| Msa0211460 | Msa0386560 | 0.810031 | 1.410450e-50 | -8.615850e-47 |
| Msa0232100 | Msa0386560 | 0.818594 | 1.806647e-52 | -8.615850e-47 |
| Msa0386540 | Msa0386560 | 0.832115 | 1.136160e-55 | -8.615850e-47 |
| Msa0386560 | Msa0387930 | 0.814355 | 1.606869e-51 | -8.615850e-47 |
| Msa0386560 | Msa0412560 | 0.811098 | 8.297414e-51 | -8.615850e-47 |
| Msa0386560 | Msa0434090 | 0.804861 | 1.763063e-49 | -8.615850e-47 |
| Msa0386560 | Msa0437480 | 0.822837 | 1.912916e-53 | -8.615850e-47 |
| Msa0386560 | Msa0440350 | 0.801311 | 9.559576e-49 | -8.615850e-47 |
| Msa0386560 | Msa0477900 | 0.812172 | 4.846445e-51 | -8.615850e-47 |
| Msa0386560 | Msa0481670 | 0.849259 | 3.627301e-60 | -8.615850e-47 |
| Msa0386560 | Msa0487110 | 0.826191 | 3.106828e-54 | -8.615850e-47 |
| Msa0386560 | Msa0523550 | 0.968057 | 3.866010e-128 | -8.615850e-47 |
| Msa0386560 | Msa0523570 | 0.813350 | 2.675592e-51 | -8.615850e-47 |
| Msa0386560 | Msa0549960 | 0.853795 | 1.886441e-61 | -8.615850e-47 |
| Msa0386560 | Msa0549970 | 0.830320 | 3.137923e-55 | -8.615850e-47 |
| Msa0386560 | Msa0567330 | 0.861730 | 8.355884e-64 | -8.615850e-47 |
| Msa0386560 | Msa0567570 | 0.861679 | 8.658079e-64 | -8.615850e-47 |
| Msa0386560 | Msa0576320 | 0.861586 | 9.245903e-64 | -8.615850e-47 |
| Msa0386560 | Msa0604190 | 0.803425 | 3.506870e-49 | -8.615850e-47 |
| Msa0386560 | Msa0605480 | 0.817271 | 3.595144e-52 | -8.615850e-47 |
| Msa0386560 | Msa0606600 | 0.808809 | 2.580581e-50 | -8.615850e-47 |
| Msa0386560 | Msa0645370 | 0.800802 | 1.214592e-48 | -8.615850e-47 |
| Msa0386560 | Msa0645390 | 0.803391 | 3.565666e-49 | -8.615850e-47 |
| Msa0386560 | Msa0646010 | 0.846898 | 1.626420e-59 | -8.615850e-47 |
| Msa0386560 | Msa0646430 | 0.844483 | 7.354290e-59 | -8.615850e-47 |
| Msa0386560 | Msa0646440 | 0.825601 | 4.287958e-54 | -8.615850e-47 |
| Msa0386560 | Msa0647300 | 0.800942 | 1.137615e-48 | -8.615850e-47 |
| Msa0386560 | Msa0657710 | 0.836287 | 1.022191e-56 | -8.615850e-47 |
| Msa0386560 | Msa0660090 | 0.806938 | 6.451805e-50 | -8.615850e-47 |
| Msa0386560 | Msa0686040 | 0.833595 | 4.871957e-56 | -8.615850e-47 |
| Msa0386560 | Msa0686830 | 0.804151 | 2.479213e-49 | -8.615850e-47 |
| Msa0386560 | Msa0702800 | 0.839502 | 1.525277e-57 | -8.615850e-47 |
| Msa0386560 | Msa0708020 | 0.813349 | 2.678141e-51 | -8.615850e-47 |
| Msa0386560 | Msa0716980 | 0.807427 | 5.080914e-50 | -8.615850e-47 |
| Msa0386560 | Msa0735010 | 0.821857 | 3.230686e-53 | -8.615850e-47 |
| Msa0386560 | Msa0812720 | 0.823105 | 1.657079e-53 | -8.615850e-47 |
| Msa0386560 | Msa0819310 | 0.827126 | 1.858224e-54 | -8.615850e-47 |
| Msa0386560 | Msa0828960 | 0.836389 | 9.628101e-57 | -8.615850e-47 |
| Msa0386560 | Msa0851760 | 0.804144 | 2.487167e-49 | -8.615850e-47 |
| Msa0386560 | Msa0853080 | 0.804373 | 2.228313e-49 | -8.615850e-47 |
| Msa0386560 | Msa0880910 | 0.860814 | 1.588266e-63 | -8.615850e-47 |
| Msa0386560 | Msa0882780 | 0.800555 | 1.364489e-48 | -8.615850e-47 |
| Msa0386560 | Msa0909260 | 0.853332 | 2.563521e-61 | -8.615850e-47 |
| Msa0386560 | Msa0910170 | 0.803039 | 4.216699e-49 | -8.615850e-47 |
| Msa0386560 | Msa0931680 | 0.818237 | 2.176288e-52 | -8.615850e-47 |
| Msa0386560 | Msa0967780 | 0.851852 | 6.774297e-61 | -8.615850e-47 |
| Msa0386560 | Msa0968180 | 0.965013 | 4.662339e-124 | -8.615850e-47 |
| Msa0386560 | Msa1024480 | 0.806064 | 9.860217e-50 | -8.615850e-47 |
| Msa0386560 | Msa1029820 | 0.858343 | 8.793506e-63 | -8.615850e-47 |
| Msa0386560 | Msa1029840 | 0.812674 | 3.764937e-51 | -8.615850e-47 |
| Msa0386560 | Msa1029860 | 0.803554 | 3.298651e-49 | -8.615850e-47 |
| Msa0386560 | Msa1041060 | 0.807475 | 4.964273e-50 | -8.615850e-47 |
| Msa0386560 | Msa1042300 | 0.822974 | 1.777558e-53 | -8.615850e-47 |
| Msa0386560 | Msa1049400 | 0.825015 | 5.901299e-54 | -8.615850e-47 |
| Msa0386560 | Msa1051530 | 0.800735 | 1.253777e-48 | -8.615850e-47 |
| Msa0386560 | Msa1052730 | 0.810122 | 1.348505e-50 | -8.615850e-47 |
| Msa0386560 | Msa1068730 | 0.817236 | 3.661491e-52 | -8.615850e-47 |
| Msa0386560 | Msa1068940 | 0.863183 | 2.985018e-64 | -8.615850e-47 |
| Msa0386560 | Msa1068950 | 0.805323 | 1.411359e-49 | -8.615850e-47 |
| Msa0386560 | Msa1088320 | 0.817456 | 3.266397e-52 | -8.615850e-47 |
| Msa0386560 | Msa1088740 | -0.800684 | 1.283976e-48 | -8.615850e-47 |
| Msa0386560 | Msa1111910 | 0.834532 | 2.838189e-56 | -8.615850e-47 |
| Msa0386560 | Msa1115900 | 0.805367 | 1.381221e-49 | -8.615850e-47 |
| Msa0386560 | Msa1127200 | 0.804720 | 1.886475e-49 | -8.615850e-47 |
| Msa0386560 | Msa1136050 | 0.818075 | 2.368770e-52 | -8.615850e-47 |
| Msa0386560 | Msa1147010 | 0.809401 | 1.927153e-50 | -8.615850e-47 |
| Msa0386560 | Msa1149910 | 0.810371 | 1.191857e-50 | -8.615850e-47 |
| Msa0386560 | Msa1156710 | 0.861599 | 9.159378e-64 | -8.615850e-47 |
| Msa0386560 | Msa1156730 | 0.818615 | 1.786929e-52 | -8.615850e-47 |
| Msa0386560 | Msa1160540 | 0.815176 | 1.057000e-51 | -8.615850e-47 |
| Msa0386560 | Msa1162370 | 0.800754 | 1.242608e-48 | -8.615850e-47 |
| Msa0386560 | Msa1165460 | 0.813991 | 1.934026e-51 | -8.615850e-47 |
| Msa0386560 | Msa1179190 | 0.831779 | 1.375272e-55 | -8.615850e-47 |
| Msa0386560 | Msa1190350 | -0.802001 | 6.902115e-49 | -8.615850e-47 |
| Msa0386560 | Msa1192360 | 0.826280 | 2.958351e-54 | -8.615850e-47 |
| Msa0386560 | Msa1200500 | 0.803449 | 3.467802e-49 | -8.615850e-47 |
| Msa0386560 | Msa1203650 | 0.808228 | 3.434185e-50 | -8.615850e-47 |
| Msa0386560 | Msa1206920 | 0.867040 | 1.834682e-65 | -8.615850e-47 |
| Msa0386560 | Msa1233620 | 0.820156 | 7.957991e-53 | -8.615850e-47 |
| Msa0386560 | Msa1241960 | 0.823670 | 1.222485e-53 | -8.615850e-47 |
| Msa0386560 | Msa1242130 | 0.813568 | 2.396146e-51 | -8.615850e-47 |
| Msa0386560 | Msa1242160 | 0.842011 | 3.354200e-58 | -8.615850e-47 |
| Msa0386560 | Msa1250610 | 0.816315 | 5.892222e-52 | -8.615850e-47 |
| Msa0386560 | Msa1250660 | 0.842516 | 2.465721e-58 | -8.615850e-47 |
| Msa0386560 | Msa1253520 | 0.810611 | 1.057507e-50 | -8.615850e-47 |
| Msa0386560 | Msa1255710 | 0.837524 | 4.940688e-57 | -8.615850e-47 |
| Msa0386560 | Msa1257200 | 0.868917 | 4.569889e-66 | -8.615850e-47 |
| Msa0386560 | Msa1263110 | 0.814966 | 1.176964e-51 | -8.615850e-47 |
| Msa0386560 | Msa1265570 | 0.808656 | 2.781888e-50 | -8.615850e-47 |
| Msa0386560 | Msa1273320 | 0.822963 | 1.788176e-53 | -8.615850e-47 |
| Msa0386560 | Msa1275840 | 0.803760 | 2.989556e-49 | -8.615850e-47 |
| Msa0386560 | Msa1275930 | 0.810634 | 1.045748e-50 | -8.615850e-47 |
| Msa0386560 | Msa1281780 | 0.815799 | 7.681356e-52 | -8.615850e-47 |
| Msa0386560 | Msa1283070 | 0.801004 | 1.104886e-48 | -8.615850e-47 |
| Msa0386560 | Msa1283930 | 0.848914 | 4.522591e-60 | -8.615850e-47 |
| Msa0386560 | Msa1283960 | 0.802869 | 4.571779e-49 | -8.615850e-47 |
| Msa0386560 | Msa1283980 | 0.820297 | 7.387567e-53 | -8.615850e-47 |
| Msa0386560 | Msa1284020 | 0.837228 | 5.881202e-57 | -8.615850e-47 |
| Msa0386560 | Msa1288070 | 0.820497 | 6.647411e-53 | -8.615850e-47 |
| Msa0386560 | Msa1296860 | 0.817084 | 3.962263e-52 | -8.615850e-47 |
| Msa0386560 | Msa1311370 | 0.808118 | 3.624349e-50 | -8.615850e-47 |
| Msa0386560 | Msa1314020 | 0.814827 | 1.263277e-51 | -8.615850e-47 |
| Msa0386560 | Msa1321010 | 0.808159 | 3.551362e-50 | -8.615850e-47 |
| Msa0386560 | Msa1322960 | 0.851373 | 9.258081e-61 | -8.615850e-47 |
| Msa0386560 | Msa1322980 | 0.829871 | 4.039077e-55 | -8.615850e-47 |
| Msa0386560 | Msa1326640 | 0.813428 | 2.572499e-51 | -8.615850e-47 |
| Msa0386560 | Msa1326680 | 0.814956 | 1.183106e-51 | -8.615850e-47 |
| Msa0386560 | Msa1326710 | 0.809326 | 1.999732e-50 | -8.615850e-47 |
| Msa0386560 | Msa1334670 | 0.812559 | 3.989629e-51 | -8.615850e-47 |
| Msa0386560 | Msa1362590 | 0.817067 | 3.995790e-52 | -8.615850e-47 |
| Msa0386560 | Msa1365230 | 0.810455 | 1.143084e-50 | -8.615850e-47 |
| Msa0386560 | Msa1381010 | 0.966953 | 1.293734e-126 | -8.615850e-47 |
| Msa0386560 | Msa1381030 | 0.836755 | 7.768005e-57 | -8.615850e-47 |
| Msa0386560 | Msa1405830 | 0.843745 | 1.159821e-58 | -8.615850e-47 |
| Msa0386560 | Msa1407810 | 0.867376 | 1.432966e-65 | -8.615850e-47 |
| Msa0386560 | Msa1409600 | 0.803592 | 3.239216e-49 | -8.615850e-47 |
| Msa0386560 | Msa1417220 | 0.818822 | 1.604103e-52 | -8.615850e-47 |
| Msa0386560 | Msa1424870 | 0.808742 | 2.666971e-50 | -8.615850e-47 |
| Msa0386560 | Msa1433360 | 0.856436 | 3.221597e-62 | -8.615850e-47 |
| Msa0386560 | Msa1437780 | 0.867073 | 1.790532e-65 | -8.615850e-47 |
| Msa0386560 | Msa1440430 | 0.838684 | 2.483751e-57 | -8.615850e-47 |
| Msa0386560 | Msa1441450 | 0.800793 | 1.220161e-48 | -8.615850e-47 |
| Msa0386560 | Msa1445530 | 0.852407 | 4.711358e-61 | -8.615850e-47 |
| Msa0386560 | Msa1461660 | 0.809980 | 1.446722e-50 | -8.615850e-47 |
| Msa0240540 | Msa0386560 | 0.804969 | 1.673228e-49 | -8.615850e-47 |
| Msa0247050 | Msa0386560 | 0.819943 | 8.905700e-53 | -8.615850e-47 |
| Msa0258010 | Msa0386560 | 0.817399 | 3.365618e-52 | -8.615850e-47 |
| Msa0279810 | Msa0386560 | 0.803541 | 3.319118e-49 | -8.615850e-47 |
| Msa0290800 | Msa0386560 | 0.804136 | 2.497336e-49 | -8.615850e-47 |
| Msa0319220 | Msa0386560 | 0.801902 | 7.231557e-49 | -8.615850e-47 |
| Msa0328870 | Msa0386560 | 0.812363 | 4.402550e-51 | -8.615850e-47 |
| Msa0333770 | Msa0386560 | 0.802036 | 6.788344e-49 | -8.615850e-47 |
| Msa0335340 | Msa0386560 | 0.802357 | 5.829628e-49 | -8.615850e-47 |
| Msa0336460 | Msa0386560 | 0.827634 | 1.403778e-54 | -8.615850e-47 |
| Msa0354840 | Msa0386560 | 0.826769 | 2.262199e-54 | -8.615850e-47 |
| Msa0356270 | Msa0386560 | 0.811149 | 8.087161e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0386560 | MtrunA17_Chr3g0144471 | 78.857 | 350 | 39 | 4 | 16 | 336 | 16 | 359 | 7.56e-177 | 494 |
| Msa0386560 | MtrunA17_Chr3g0090451 | 63.966 | 358 | 105 | 4 | 1 | 334 | 1 | 358 | 5.07e-132 | 389 |
| Msa0386560 | MtrunA17_Chr3g0090451 | 61.981 | 313 | 105 | 5 | 29 | 335 | 237 | 541 | 8.08e-114 | 342 |
| Msa0386560 | MtrunA17_Chr3g0090451 | 68.482 | 257 | 75 | 2 | 85 | 335 | 337 | 593 | 1.21e-111 | 336 |
| Msa0386560 | MtrunA17_Chr3g0090471 | 52.785 | 377 | 114 | 5 | 16 | 334 | 16 | 386 | 3.39e-113 | 336 |
| Msa0386560 | MtrunA17_Chr3g0090471 | 61.265 | 253 | 92 | 2 | 88 | 334 | 186 | 438 | 2.09e-95 | 291 |
| Msa0386560 | MtrunA17_Chr3g0090471 | 59.766 | 256 | 97 | 2 | 85 | 334 | 209 | 464 | 1.46e-94 | 288 |
| Msa0386560 | MtrunA17_Chr3g0090471 | 59.664 | 238 | 94 | 1 | 79 | 314 | 229 | 466 | 4.04e-87 | 270 |
| Msa0386560 | MtrunA17_Chr3g0090471 | 57.143 | 98 | 38 | 1 | 242 | 335 | 56 | 153 | 4.61e-23 | 99.4 |
| Msa0386560 | MtrunA17_Chr3g0144461 | 58.651 | 341 | 120 | 6 | 1 | 334 | 1 | 327 | 1.24e-108 | 323 |
| Msa0386560 | MtrunA17_Chr3g0144461 | 58.824 | 221 | 88 | 2 | 94 | 311 | 210 | 430 | 3.52e-75 | 238 |
| Msa0386560 | MtrunA17_Chr3g0144461 | 56.962 | 158 | 65 | 1 | 79 | 233 | 273 | 430 | 1.05e-46 | 163 |
| Msa0386560 | MtrunA17_Chr3g0138221 | 49.383 | 324 | 142 | 4 | 17 | 334 | 17 | 324 | 8.17e-90 | 276 |
| Msa0386560 | MtrunA17_Chr3g0138221 | 50.394 | 254 | 124 | 1 | 85 | 336 | 225 | 478 | 6.20e-74 | 236 |
| Msa0386560 | MtrunA17_Chr3g0138221 | 49.600 | 250 | 120 | 2 | 85 | 328 | 147 | 396 | 8.82e-70 | 225 |
| Msa0386560 | MtrunA17_Chr3g0138221 | 47.287 | 258 | 130 | 2 | 85 | 336 | 173 | 430 | 2.61e-66 | 216 |
| Msa0386560 | MtrunA17_Chr4g0034831 | 35.714 | 336 | 181 | 14 | 18 | 336 | 19 | 336 | 1.88e-45 | 159 |
| Msa0386560 | MtrunA17_Chr4g0034831 | 30.026 | 383 | 165 | 13 | 19 | 314 | 20 | 386 | 1.20e-30 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 65 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTGGTTCAAAATCTTTAT+TGG | 0.220637 | 3_1:-90330466 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 3_1:-90330544 | None:intergenic |
| TCTTGGTTCAAAATCTTTAT+TGG | 0.225126 | 3_1:-90330622 | None:intergenic |
| AGACCTAACATTTCAGCTTA+TGG | 0.239620 | 3_1:+90330720 | Msa0386560:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3_1:+90330252 | Msa0386560:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3_1:+90330408 | Msa0386560:CDS |
| AGACCCAATGTTTCAGCTTA+TGG | 0.248284 | 3_1:+90330564 | Msa0386560:CDS |
| AGACCTAATGTTTCAGCTTA+TGG | 0.249885 | 3_1:+90330174 | Msa0386560:CDS |
| TGTAGAATCAAGAAAAGATT+TGG | 0.250935 | 3_1:+90329858 | Msa0386560:CDS |
| GACCTAACATTTCAGCTTAT+GGG | 0.310475 | 3_1:+90330721 | Msa0386560:CDS |
| AGGTCTTGGTTCAAAATCTT+TGG | 0.310679 | 3_1:-90330703 | None:intergenic |
| CATTTATGCATCATATTTAG+TGG | 0.320826 | 3_1:-90330796 | None:intergenic |
| GTTCCATAAGCTGAAACATT+AGG | 0.327800 | 3_1:-90330177 | None:intergenic |
| AAACAATTACATTGATGTTA+TGG | 0.330758 | 3_1:+90330665 | Msa0386560:CDS |
| ATATTTAGTGGCACTTGGTC+GGG | 0.347002 | 3_1:-90330784 | None:intergenic |
| AGACAATCGTGTTGAAGTTA+AGG | 0.379767 | 3_1:+90330353 | Msa0386560:CDS |
| TCTTCATATGCTGAAATGTT+TGG | 0.381711 | 3_1:-90330489 | None:intergenic |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | 3_1:+90330431 | Msa0386560:CDS |
| AGACAATGGTATTGATGTTA+AGG | 0.392683 | 3_1:+90330587 | Msa0386560:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 3_1:+90330441 | Msa0386560:CDS |
| ATTGATGTTAAGGAAAATAA+AGG | 0.395870 | 3_1:+90330597 | Msa0386560:CDS |
| ATGAATGATGTCATTGTCTA+TGG | 0.405969 | 3_1:-90330040 | None:intergenic |
| ATTGATGTTACAGAAAATAA+AGG | 0.415243 | 3_1:+90330519 | Msa0386560:CDS |
| ACACCCAATGTTTCAGCATA+TGG | 0.418154 | 3_1:+90330330 | Msa0386560:CDS |
| GTAGAATCAAGAAAAGATTT+GGG | 0.427549 | 3_1:+90329859 | Msa0386560:CDS |
| TATGCTGAAACATTGGGTCT+TGG | 0.433141 | 3_1:-90330639 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.435355 | 3_1:-90330405 | None:intergenic |
| TATGCTGAAATGTTTGGTCT+TGG | 0.439257 | 3_1:-90330483 | None:intergenic |
| GACAATCGTGTTGAAGTTAA+GGG | 0.442091 | 3_1:+90330354 | Msa0386560:CDS |
| CATATTTAGTGGCACTTGGT+CGG | 0.446372 | 3_1:-90330785 | None:intergenic |
| TAAGCTGAAATGTTAGGTCT+TGG | 0.458122 | 3_1:-90330717 | None:intergenic |
| TAAGCTGAAACATTAGGTCT+TGG | 0.463292 | 3_1:-90330171 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | 3_1:-90330249 | None:intergenic |
| TAAGCTGAAACATTGGGTCT+TGG | 0.464372 | 3_1:-90330561 | None:intergenic |
| TATGAAGATAATAACATTGA+GGG | 0.464536 | 3_1:+90330120 | Msa0386560:CDS |
| AAACCTTTGAAAGACTGCTT+CGG | 0.465281 | 3_1:-90329973 | None:intergenic |
| ATTCATGCTAAGAGAAAGAA+AGG | 0.472696 | 3_1:+90330057 | Msa0386560:CDS |
| AACAAATGAAATTGATGCTA+AGG | 0.478202 | 3_1:+90330197 | Msa0386560:CDS |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3_1:-90330256 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3_1:-90330412 | None:intergenic |
| GTCTCCATAAGCTGAAACAT+TGG | 0.487144 | 3_1:-90330568 | None:intergenic |
| TCCCCATAAGCTGAAATGTT+AGG | 0.487972 | 3_1:-90330723 | None:intergenic |
| TATTTAGTGGCACTTGGTCG+GGG | 0.498218 | 3_1:-90330783 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3_1:-90330255 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3_1:-90330411 | None:intergenic |
| TCTCCATAAGCTGAAACATT+GGG | 0.499953 | 3_1:-90330567 | None:intergenic |
| GTCTCCATATGCTGAAACAT+TGG | 0.510420 | 3_1:-90330334 | None:intergenic |
| GCATCATATTTAGTGGCACT+TGG | 0.527772 | 3_1:-90330789 | None:intergenic |
| AATTGATGCTAAGGAAAAGA+AGG | 0.533314 | 3_1:+90330206 | Msa0386560:CDS |
| AGGGGCAACAAAGCAAGAGC+AGG | 0.535358 | 3_1:-90327399 | None:intergenic |
| ACTCCGAAGCAGTCTTTCAA+AGG | 0.542773 | 3_1:+90329970 | Msa0386560:CDS |
| TCTCCATATGCTGAAACATT+GGG | 0.551421 | 3_1:-90330333 | None:intergenic |
| ACCTAACATTTCAGCTTATG+GGG | 0.562671 | 3_1:+90330722 | Msa0386560:CDS |
| GACATGCGAAAAGAAATTCA+AGG | 0.567894 | 3_1:+90329913 | Msa0386560:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | 3_1:+90330417 | Msa0386560:CDS |
| GTTTCAGCTTATGGAGACAA+TGG | 0.577650 | 3_1:+90330573 | Msa0386560:CDS |
| ATATGAAGATAATAACATTG+AGG | 0.587671 | 3_1:+90330119 | Msa0386560:CDS |
| TATGCTGAAACATTGGGTGT+TGG | 0.621863 | 3_1:-90330327 | None:intergenic |
| ACATGCGAAAAGAAATTCAA+GGG | 0.625015 | 3_1:+90329914 | Msa0386560:CDS |
| TATTGATGTTGAATTCACAA+AGG | 0.628277 | 3_1:+90330752 | Msa0386560:CDS |
| ACTTGTGTGTCTATTACAAG+TGG | 0.633990 | 3_1:-90330015 | None:intergenic |
| ACATACCAAGAAAAGCAAGA+GGG | 0.652569 | 3_1:-90327418 | None:intergenic |
| CATACCAAGAAAAGCAAGAG+GGG | 0.655694 | 3_1:-90327417 | None:intergenic |
| AACATACCAAGAAAAGCAAG+AGG | 0.668669 | 3_1:-90327419 | None:intergenic |
| AAGTCAGACACATACAGCAG+AGG | 0.686329 | 3_1:+90327355 | Msa0386560:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATAATTATATTTA+AGG | - | chr3_1:90328671-90328690 | None:intergenic | 0.0% |
| !! | AATTAAATGTAAAATATAAG+AGG | - | chr3_1:90327495-90327514 | None:intergenic | 10.0% |
| !!! | AAGATTTAAAAATGATTTTA+TGG | - | chr3_1:90327594-90327613 | None:intergenic | 10.0% |
| !! | AATATATACCTATATATAAA+GGG | - | chr3_1:90328339-90328358 | None:intergenic | 10.0% |
| !! | AATGTAAAATCTTATTATAA+TGG | - | chr3_1:90328393-90328412 | None:intergenic | 10.0% |
| !!! | CATAAAAAAAAATCATTTTT+TGG | - | chr3_1:90328564-90328583 | None:intergenic | 10.0% |
| !!! | CAAAAAATGATTTTTTTTTA+TGG | + | chr3_1:90328562-90328581 | Msa0386560:intron | 10.0% |
| !!! | TTTTTTTTTTATTTTGCTAT+TGG | - | chr3_1:90328795-90328814 | None:intergenic | 10.0% |
| !!! | TGACTTATTTTATATTTTGA+TGG | - | chr3_1:90327341-90327360 | None:intergenic | 15.0% |
| !! | AATAAAATCTTCATCTAATT+GGG | - | chr3_1:90327928-90327947 | None:intergenic | 15.0% |
| !! | AAATAAAATCTTCATCTAAT+TGG | - | chr3_1:90327929-90327948 | None:intergenic | 15.0% |
| !!! | AAACTTTTAATTAAGAAAGT+TGG | - | chr3_1:90328223-90328242 | None:intergenic | 15.0% |
| !! | ATATATACCTATATATAAAG+GGG | - | chr3_1:90328338-90328357 | None:intergenic | 15.0% |
| !! | CAATATATACCTATATATAA+AGG | - | chr3_1:90328340-90328359 | None:intergenic | 15.0% |
| !!! | ATTTTTTGGTAAATCAAAAA+CGG | - | chr3_1:90328550-90328569 | None:intergenic | 15.0% |
| !!! | CTAATTGAGATATTTTTTTA+AGG | - | chr3_1:90329059-90329078 | None:intergenic | 15.0% |
| !! | CTTAAAAAAATATCTCAATT+AGG | + | chr3_1:90329057-90329076 | Msa0386560:intron | 15.0% |
| !!! | TTGAACAATTATTTTCTTGT+TGG | + | chr3_1:90327513-90327532 | Msa0386560:intron | 20.0% |
| !! | TATAATCACTAACATCAAAA+TGG | + | chr3_1:90327635-90327654 | Msa0386560:intron | 20.0% |
| !! | ATAATCACTAACATCAAAAT+GGG | + | chr3_1:90327636-90327655 | Msa0386560:intron | 20.0% |
| !! | TTATATTGTTCATATTGAAG+TGG | + | chr3_1:90327947-90327966 | Msa0386560:intron | 20.0% |
| !! | ATTAGAATAATTTAACCGAA+TGG | + | chr3_1:90328049-90328068 | Msa0386560:intron | 20.0% |
| !! | TATCTTCTAATTATACCATT+CGG | - | chr3_1:90328067-90328086 | None:intergenic | 20.0% |
| !!! | GTTGAATCTTTATTTAATTG+TGG | - | chr3_1:90328147-90328166 | None:intergenic | 20.0% |
| !! | TAATAAGAATAGTTAACGAA+GGG | + | chr3_1:90328273-90328292 | Msa0386560:intron | 20.0% |
| !! | TACTTCAAGAATATTAGATA+TGG | - | chr3_1:90329109-90329128 | None:intergenic | 20.0% |
| !! | ATAAATTGGATCCTAAAATT+TGG | - | chr3_1:90329240-90329259 | None:intergenic | 20.0% |
| !!! | ATTTTAGGATCCAATTTATT+AGG | + | chr3_1:90329241-90329260 | Msa0386560:intron | 20.0% |
| !!! | TAACTTGTATCCTAATAAAT+TGG | - | chr3_1:90329254-90329273 | None:intergenic | 20.0% |
| !! | TATTAGGATACAAGTTAATA+TGG | + | chr3_1:90329257-90329276 | Msa0386560:intron | 20.0% |
| !! | AAATTATTTCCTAACCAAAA+AGG | - | chr3_1:90329533-90329552 | None:intergenic | 20.0% |
| !!! | AATAGTTGGCAAATTTTAAT+TGG | - | chr3_1:90329696-90329715 | None:intergenic | 20.0% |
| !!! | AGAATTTTTCAAGAAATAGT+TGG | - | chr3_1:90329710-90329729 | None:intergenic | 20.0% |
| !! | ATATAGAATCGTTTAAAAGA+AGG | - | chr3_1:90329764-90329783 | None:intergenic | 20.0% |
| !! | TAAGACATAAGAAAAAGTAA+TGG | - | chr3_1:90329803-90329822 | None:intergenic | 20.0% |
| !!! | TCTTCATATTTTGAAACATT+GGG | - | chr3_1:90330108-90330127 | None:intergenic | 20.0% |
| !!! | ATCTTCATATTTTGAAACAT+TGG | - | chr3_1:90330109-90330128 | None:intergenic | 20.0% |
| !! | ATATGAAGATAATAACATTG+AGG | + | chr3_1:90330119-90330138 | Msa0386560:CDS | 20.0% |
| !! | TATGAAGATAATAACATTGA+GGG | + | chr3_1:90330120-90330139 | Msa0386560:CDS | 20.0% |
| !! | ATTGATGTTAAGGAAAATAA+AGG | + | chr3_1:90330441-90330460 | Msa0386560:CDS | 20.0% |
| !! | ATTGATGTTACAGAAAATAA+AGG | + | chr3_1:90330519-90330538 | Msa0386560:CDS | 20.0% |
| !! | ATTGATGTTAAGGAAAATAA+AGG | + | chr3_1:90330441-90330460 | Msa0386560:CDS | 20.0% |
| !! | AAACAATTACATTGATGTTA+TGG | + | chr3_1:90330665-90330684 | Msa0386560:CDS | 20.0% |
| ! | ATCGATTAACTTTCAGTATT+CGG | - | chr3_1:90327559-90327578 | None:intergenic | 25.0% |
| ! | GTAATAAGAATAGTTAACGA+AGG | + | chr3_1:90328272-90328291 | Msa0386560:intron | 25.0% |
| !! | TAAAGGGGATATATGATTTT+AGG | - | chr3_1:90328323-90328342 | None:intergenic | 25.0% |
| ! | CATATATCCCCTTTATATAT+AGG | + | chr3_1:90328328-90328347 | Msa0386560:intron | 25.0% |
| !!! | TGATTTTTTTTTATGGTGTC+CGG | + | chr3_1:90328569-90328588 | Msa0386560:intron | 25.0% |
| !!! | TTTTTATTTTGCTATTGGTC+AGG | - | chr3_1:90328790-90328809 | None:intergenic | 25.0% |
| ! | TTAGGTAGATTAATCTTAAG+TGG | - | chr3_1:90328960-90328979 | None:intergenic | 25.0% |
| !! | TCAACGATTTTCCAAATTTT+AGG | + | chr3_1:90329226-90329245 | Msa0386560:intron | 25.0% |
| ! | GGAAAAAACACTCATAATTA+GGG | - | chr3_1:90329512-90329531 | None:intergenic | 25.0% |
| ! | AGGAAAAAACACTCATAATT+AGG | - | chr3_1:90329513-90329532 | None:intergenic | 25.0% |
| !!! | TATGAGTGTTTTTTCCTTTT+TGG | + | chr3_1:90329516-90329535 | Msa0386560:intron | 25.0% |
| ! | TGTAGAATCAAGAAAAGATT+TGG | + | chr3_1:90329858-90329877 | Msa0386560:CDS | 25.0% |
| ! | GTAGAATCAAGAAAAGATTT+GGG | + | chr3_1:90329859-90329878 | Msa0386560:CDS | 25.0% |
| ! | AACAAATGAAATTGATGCTA+AGG | + | chr3_1:90330197-90330216 | Msa0386560:CDS | 25.0% |
| ! | TATTGATGCTAAGAAAAAGA+AGG | + | chr3_1:90330284-90330303 | Msa0386560:CDS | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | - | chr3_1:90330469-90330488 | None:intergenic | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | - | chr3_1:90330469-90330488 | None:intergenic | 25.0% |
| ! | TCTTGGTTCAAAATCTTTAT+TGG | - | chr3_1:90330469-90330488 | None:intergenic | 25.0% |
| !! | TTTTCATATGCTGAAACATT+GGG | - | chr3_1:90330648-90330667 | None:intergenic | 25.0% |
| ! | TATTGATGTTGAATTCACAA+AGG | + | chr3_1:90330752-90330771 | Msa0386560:CDS | 25.0% |
| ! | TGTGACCAAACCAAAATTTT+TGG | - | chr3_1:90327696-90327715 | None:intergenic | 30.0% |
| !!! | GATTTTTTTTTATGGTGTCC+GGG | + | chr3_1:90328570-90328589 | Msa0386560:intron | 30.0% |
| !!! | ATTTTTTTTTATGGTGTCCG+GGG | + | chr3_1:90328571-90328590 | Msa0386560:intron | 30.0% |
| GACAATGCATAATATATGCA+AGG | - | chr3_1:90328610-90328629 | None:intergenic | 30.0% | |
| ! | AAAAAGTATACGACTCACAT+TGG | + | chr3_1:90328707-90328726 | Msa0386560:intron | 30.0% |
| AAAACATTCAAGTGAGTGTT+GGG | + | chr3_1:90328762-90328781 | Msa0386560:intron | 30.0% | |
| !! | TTTTAAGGATTCGTTATCTC+AGG | - | chr3_1:90329044-90329063 | None:intergenic | 30.0% |
| TTTCACCAGTTTGAGAAAAT+AGG | + | chr3_1:90329176-90329195 | Msa0386560:intron | 30.0% | |
| ! | AATGTCCTATTTTCTCAAAC+TGG | - | chr3_1:90329184-90329203 | None:intergenic | 30.0% |
| GAGAAAATAGGACATTCTTA+AGG | + | chr3_1:90329188-90329207 | Msa0386560:intron | 30.0% | |
| TAGGATACAAGTTAATATGG+TGG | + | chr3_1:90329260-90329279 | Msa0386560:intron | 30.0% | |
| TAACCAATAACATGTTTACC+CGG | + | chr3_1:90329433-90329452 | Msa0386560:intron | 30.0% | |
| !!! | GTGTTTTTTCCTTTTTGGTT+AGG | + | chr3_1:90329521-90329540 | Msa0386560:intron | 30.0% |
| ACATGCGAAAAGAAATTCAA+GGG | + | chr3_1:90329914-90329933 | Msa0386560:CDS | 30.0% | |
| ATGAATGATGTCATTGTCTA+TGG | - | chr3_1:90330043-90330062 | None:intergenic | 30.0% | |
| ATTCATGCTAAGAGAAAGAA+AGG | + | chr3_1:90330057-90330076 | Msa0386560:CDS | 30.0% | |
| !!! | TATTTTGAAACATTGGGTCT+TGG | - | chr3_1:90330102-90330121 | None:intergenic | 30.0% |
| AATTGATGCTAAGGAAAAGA+AGG | + | chr3_1:90330206-90330225 | Msa0386560:CDS | 30.0% | |
| !! | AGACAATGGTATTGATGTTA+AGG | + | chr3_1:90330431-90330450 | Msa0386560:CDS | 30.0% |
| TCTTCATATGCTGAAATGTT+TGG | - | chr3_1:90330492-90330511 | None:intergenic | 30.0% | |
| !! | AGACAATGGTATTGATGTTA+AGG | + | chr3_1:90330431-90330450 | Msa0386560:CDS | 30.0% |
| ! | GTTTTCATATGCTGAAACAT+TGG | - | chr3_1:90330649-90330668 | None:intergenic | 30.0% |
| ACATACCAAGAAAAGCAAGA+GGG | - | chr3_1:90327421-90327440 | None:intergenic | 35.0% | |
| AACATACCAAGAAAAGCAAG+AGG | - | chr3_1:90327422-90327441 | None:intergenic | 35.0% | |
| ATTGTCGAGAAAATCTTGTG+TGG | + | chr3_1:90327663-90327682 | Msa0386560:intron | 35.0% | |
| !!! | CAAACCAAAATTTTTGGTCC+TGG | - | chr3_1:90327690-90327709 | None:intergenic | 35.0% |
| !!! | CAGGACCAAAAATTTTGGTT+TGG | + | chr3_1:90327688-90327707 | Msa0386560:intron | 35.0% |
| GAAAGAGAAGAGAGAGAAAA+TGG | - | chr3_1:90327760-90327779 | None:intergenic | 35.0% | |
| TGTGACCAAACCAAAATTCT+TGG | + | chr3_1:90327799-90327818 | Msa0386560:intron | 35.0% | |
| AATAACGAGAAACACTTGTG+TGG | - | chr3_1:90327832-90327851 | None:intergenic | 35.0% | |
| TTGTGCAATACGAAAGCAAA+AGG | - | chr3_1:90327860-90327879 | None:intergenic | 35.0% | |
| ! | TGTGAAGAGTTGCATGATTT+TGG | - | chr3_1:90328100-90328119 | None:intergenic | 35.0% |
| CTTCACACAGATGTATAGAT+AGG | + | chr3_1:90328113-90328132 | Msa0386560:intron | 35.0% | |
| !!! | CCTTTTTTTTGAGGGATCAA+GGG | - | chr3_1:90328493-90328512 | None:intergenic | 35.0% |
| !!! | ACCTTTTTTTTGAGGGATCA+AGG | - | chr3_1:90328494-90328513 | None:intergenic | 35.0% |
| !!! | TCAAGGGACCTTTTTTTTGA+GGG | - | chr3_1:90328501-90328520 | None:intergenic | 35.0% |
| CAAAACATTCAAGTGAGTGT+TGG | + | chr3_1:90328761-90328780 | Msa0386560:intron | 35.0% | |
| ! | AAACATTCAAGTGAGTGTTG+GGG | + | chr3_1:90328763-90328782 | Msa0386560:intron | 35.0% |
| !!! | GGAGGAGATATTATTTTGAG+TGG | - | chr3_1:90328939-90328958 | None:intergenic | 35.0% |
| GGTAGATTAATCTTAAGTGG+AGG | - | chr3_1:90328957-90328976 | None:intergenic | 35.0% | |
| !! | TCGTTATCTCAGGTTGTTTT+AGG | - | chr3_1:90329034-90329053 | None:intergenic | 35.0% |
| TGTGGCTGAAAAATAAGAAG+TGG | + | chr3_1:90329657-90329676 | Msa0386560:intron | 35.0% | |
| GACATGCGAAAAGAAATTCA+AGG | + | chr3_1:90329913-90329932 | Msa0386560:CDS | 35.0% | |
| ! | AAACCTTTGAAAGACTGCTT+CGG | - | chr3_1:90329976-90329995 | None:intergenic | 35.0% |
| ACTTGTGTGTCTATTACAAG+TGG | - | chr3_1:90330018-90330037 | None:intergenic | 35.0% | |
| TAAGCTGAAACATTAGGTCT+TGG | - | chr3_1:90330174-90330193 | None:intergenic | 35.0% | |
| AGACCTAATGTTTCAGCTTA+TGG | + | chr3_1:90330174-90330193 | Msa0386560:CDS | 35.0% | |
| GTTCCATAAGCTGAAACATT+AGG | - | chr3_1:90330180-90330199 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | - | chr3_1:90330258-90330277 | None:intergenic | 35.0% | |
| TCTCCATATGCTGAAACATT+GGG | - | chr3_1:90330336-90330355 | None:intergenic | 35.0% | |
| AGACAATCGTGTTGAAGTTA+AGG | + | chr3_1:90330353-90330372 | Msa0386560:CDS | 35.0% | |
| GACAATCGTGTTGAAGTTAA+GGG | + | chr3_1:90330354-90330373 | Msa0386560:CDS | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | - | chr3_1:90330258-90330277 | None:intergenic | 35.0% | |
| TATGCTGAAATGTTTGGTCT+TGG | - | chr3_1:90330486-90330505 | None:intergenic | 35.0% | |
| TCTCCATAAGCTGAAACATT+GGG | - | chr3_1:90330258-90330277 | None:intergenic | 35.0% | |
| AGGTCTTGGTTCAAAATCTT+TGG | - | chr3_1:90330706-90330725 | None:intergenic | 35.0% | |
| TAAGCTGAAATGTTAGGTCT+TGG | - | chr3_1:90330720-90330739 | None:intergenic | 35.0% | |
| AGACCTAACATTTCAGCTTA+TGG | + | chr3_1:90330720-90330739 | Msa0386560:CDS | 35.0% | |
| GACCTAACATTTCAGCTTAT+GGG | + | chr3_1:90330721-90330740 | Msa0386560:CDS | 35.0% | |
| ACCTAACATTTCAGCTTATG+GGG | + | chr3_1:90330722-90330741 | Msa0386560:CDS | 35.0% | |
| CATACCAAGAAAAGCAAGAG+GGG | - | chr3_1:90327420-90327439 | None:intergenic | 40.0% | |
| ! | TGGACCAGGACCAAAAATTT+TGG | + | chr3_1:90327683-90327702 | Msa0386560:intron | 40.0% |
| !!! | CAGGACCAAGAATTTTGGTT+TGG | - | chr3_1:90327807-90327826 | None:intergenic | 40.0% |
| CAAACCAAAATTCTTGGTCC+TGG | + | chr3_1:90327805-90327824 | Msa0386560:intron | 40.0% | |
| CCCTTGATCCCTCAAAAAAA+AGG | + | chr3_1:90328490-90328509 | Msa0386560:intron | 40.0% | |
| !!! | GTCAAGGGACCTTTTTTTTG+AGG | - | chr3_1:90328502-90328521 | None:intergenic | 40.0% |
| AAAAAGGTCCCTTGACCATT+AGG | + | chr3_1:90328506-90328525 | Msa0386560:intron | 40.0% | |
| CATAATATATGCAAGGTCCG+CGG | - | chr3_1:90328603-90328622 | None:intergenic | 40.0% | |
| TGACTCTCAGAGAGAACTTT+AGG | - | chr3_1:90328978-90328997 | None:intergenic | 40.0% | |
| GTTGGGGTTGAGATAAAATG+TGG | - | chr3_1:90329307-90329326 | None:intergenic | 40.0% | |
| !! | TGAACGCCATAAGAAGTGTT+GGG | - | chr3_1:90329324-90329343 | None:intergenic | 40.0% |
| ! | TTGAACGCCATAAGAAGTGT+TGG | - | chr3_1:90329325-90329344 | None:intergenic | 40.0% |
| TGAAGGTTTCCCTTGTATTC+TGG | - | chr3_1:90329459-90329478 | None:intergenic | 40.0% | |
| AGCGAACAATCATCTAGTGA+AGG | - | chr3_1:90329476-90329495 | None:intergenic | 40.0% | |
| GGCAAATAGTGCATTGTGAT+TGG | - | chr3_1:90329623-90329642 | None:intergenic | 40.0% | |
| GCACTATTTGCCACAATTCA+AGG | + | chr3_1:90329631-90329650 | Msa0386560:intron | 40.0% | |
| CTATTTGCCACAATTCAAGG+AGG | + | chr3_1:90329634-90329653 | Msa0386560:intron | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | - | chr3_1:90330252-90330271 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | + | chr3_1:90330252-90330271 | Msa0386560:CDS | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | - | chr3_1:90330259-90330278 | None:intergenic | 40.0% | |
| TATGCTGAAACATTGGGTGT+TGG | - | chr3_1:90330330-90330349 | None:intergenic | 40.0% | |
| ACACCCAATGTTTCAGCATA+TGG | + | chr3_1:90330330-90330349 | Msa0386560:CDS | 40.0% | |
| GTCTCCATATGCTGAAACAT+TGG | - | chr3_1:90330337-90330356 | None:intergenic | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | - | chr3_1:90330252-90330271 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | + | chr3_1:90330252-90330271 | Msa0386560:CDS | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | - | chr3_1:90330259-90330278 | None:intergenic | 40.0% | |
| GTTTCAGCTTATGGAGACAA+TGG | + | chr3_1:90330261-90330280 | Msa0386560:CDS | 40.0% | |
| TAAGCTGAAACATTGGGTCT+TGG | - | chr3_1:90330252-90330271 | None:intergenic | 40.0% | |
| AGACCCAATGTTTCAGCTTA+TGG | + | chr3_1:90330252-90330271 | Msa0386560:CDS | 40.0% | |
| GTCTCCATAAGCTGAAACAT+TGG | - | chr3_1:90330259-90330278 | None:intergenic | 40.0% | |
| GTTTCAGCTTATGGAGACAA+TGG | + | chr3_1:90330261-90330280 | Msa0386560:CDS | 40.0% | |
| TATGCTGAAACATTGGGTCT+TGG | - | chr3_1:90330642-90330661 | None:intergenic | 40.0% | |
| TCCCCATAAGCTGAAATGTT+AGG | - | chr3_1:90330726-90330745 | None:intergenic | 40.0% | |
| ATATTTAGTGGCACTTGGTC+GGG | - | chr3_1:90330787-90330806 | None:intergenic | 40.0% | |
| CATATTTAGTGGCACTTGGT+CGG | - | chr3_1:90330788-90330807 | None:intergenic | 40.0% | |
| GCATCATATTTAGTGGCACT+TGG | - | chr3_1:90330792-90330811 | None:intergenic | 40.0% | |
| AAGTCAGACACATACAGCAG+AGG | + | chr3_1:90327355-90327374 | Msa0386560:five_prime_UTR | 45.0% | |
| GAGAAAATCTTGTGTGGACC+AGG | + | chr3_1:90327669-90327688 | Msa0386560:intron | 45.0% | |
| GAGAGAAGAGAAGAGAGAGA+AGG | - | chr3_1:90327733-90327752 | None:intergenic | 45.0% | |
| ! | TGGACCAGGACCAAGAATTT+TGG | - | chr3_1:90327812-90327831 | None:intergenic | 45.0% |
| GCAATGGACCTAATGGTCAA+GGG | - | chr3_1:90328517-90328536 | None:intergenic | 45.0% | |
| TGCAATGGACCTAATGGTCA+AGG | - | chr3_1:90328518-90328537 | None:intergenic | 45.0% | |
| TGACCATTAGGTCCATTGCA+CGG | + | chr3_1:90328518-90328537 | Msa0386560:intron | 45.0% | |
| CTCAACCCCAACACTTCTTA+TGG | + | chr3_1:90329315-90329334 | Msa0386560:intron | 45.0% | |
| !! | GAACGCCATAAGAAGTGTTG+GGG | - | chr3_1:90329323-90329342 | None:intergenic | 45.0% |
| TGGCCGGGTAAACATGTTAT+TGG | - | chr3_1:90329439-90329458 | None:intergenic | 45.0% | |
| TTTACCCGGCCAGAATACAA+GGG | + | chr3_1:90329447-90329466 | Msa0386560:intron | 45.0% | |
| ACTCCGAAGCAGTCTTTCAA+AGG | + | chr3_1:90329970-90329989 | Msa0386560:CDS | 45.0% | |
| TATTTAGTGGCACTTGGTCG+GGG | - | chr3_1:90330786-90330805 | None:intergenic | 45.0% | |
| !! | AACAAAAATAATAAATATTT+AGG | + | chr3_1:90328466-90328485 | Msa0386560:intron | 5.0% |
| !!! | TGTTATTTTTTATTTTTTTA+AGG | - | chr3_1:90329360-90329379 | None:intergenic | 5.0% |
| !! | GTTGCCCCTCTTGCTTTTCT+TGG | + | chr3_1:90327413-90327432 | Msa0386560:CDS | 50.0% |
| GAGAAACACTTGTGTGGACC+AGG | - | chr3_1:90327826-90327845 | None:intergenic | 50.0% | |
| AAACGGTATCCTCCGTGCAA+TGG | - | chr3_1:90328533-90328552 | None:intergenic | 50.0% | |
| !! | TTCCAACGAGCTTGCTAGCT+TGG | - | chr3_1:90328646-90328665 | None:intergenic | 50.0% |
| !! | GGTGGCTTGCTGCTTAGAAA+AGG | + | chr3_1:90329278-90329297 | Msa0386560:intron | 50.0% |
| CCTTCGAGACAATCTTCGTC+GGG | - | chr3_1:90329397-90329416 | None:intergenic | 50.0% | |
| CCCTTCGAGACAATCTTCGT+CGG | - | chr3_1:90329398-90329417 | None:intergenic | 50.0% | |
| CCGACGAAGATTGTCTCGAA+GGG | + | chr3_1:90329395-90329414 | Msa0386560:intron | 50.0% | |
| GTTTACCCGGCCAGAATACA+AGG | + | chr3_1:90329446-90329465 | Msa0386560:intron | 50.0% | |
| GTTTCCCTTGTATTCTGGCC+GGG | - | chr3_1:90329454-90329473 | None:intergenic | 50.0% | |
| GGTTTCCCTTGTATTCTGGC+CGG | - | chr3_1:90329455-90329474 | None:intergenic | 50.0% | |
| TGCCACAATTCAAGGAGGTG+TGG | + | chr3_1:90329639-90329658 | Msa0386560:intron | 50.0% | |
| AGCCACACCTCCTTGAATTG+TGG | - | chr3_1:90329644-90329663 | None:intergenic | 50.0% | |
| AGGGGCAACAAAGCAAGAGC+AGG | - | chr3_1:90327402-90327421 | None:intergenic | 55.0% | |
| CCTCCGTGCAATGGACCTAA+TGG | - | chr3_1:90328524-90328543 | None:intergenic | 55.0% | |
| CCATTAGGTCCATTGCACGG+AGG | + | chr3_1:90328521-90328540 | Msa0386560:intron | 55.0% | |
| ! | GCTTGCTAGCTTGGCTAAGC+TGG | - | chr3_1:90328637-90328656 | None:intergenic | 55.0% |
| AGCCAAGCTAGCAAGCTCGT+TGG | + | chr3_1:90328641-90328660 | Msa0386560:intron | 55.0% | |
| CCCGACGAAGATTGTCTCGA+AGG | + | chr3_1:90329394-90329413 | Msa0386560:intron | 55.0% | |
| AAGGTCCGCGGTTCAAACCC+CGG | - | chr3_1:90328591-90328610 | None:intergenic | 60.0% | |
| GGTGTCCGGGGTTTGAACCG+CGG | + | chr3_1:90328583-90328602 | Msa0386560:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 90327323 | 90330815 | 90327323 | ID=Msa0386560;Name=Msa0386560 |
| chr3_1 | mRNA | 90327323 | 90330815 | 90327323 | ID=Msa0386560-mRNA-1;Parent=Msa0386560;Name=Msa0386560-mRNA-1;_AED=0.23;_eAED=0.23;_QI=70|1|0.5|1|0|0|2|0|336 |
| chr3_1 | exon | 90327323 | 90327434 | 90327323 | ID=Msa0386560-mRNA-1:exon:24950;Parent=Msa0386560-mRNA-1 |
| chr3_1 | exon | 90329847 | 90330815 | 90329847 | ID=Msa0386560-mRNA-1:exon:24951;Parent=Msa0386560-mRNA-1 |
| chr3_1 | five_prime_UTR | 90327323 | 90327392 | 90327323 | ID=Msa0386560-mRNA-1:five_prime_utr;Parent=Msa0386560-mRNA-1 |
| chr3_1 | CDS | 90327393 | 90327434 | 90327393 | ID=Msa0386560-mRNA-1:cds;Parent=Msa0386560-mRNA-1 |
| chr3_1 | CDS | 90329847 | 90330815 | 90329847 | ID=Msa0386560-mRNA-1:cds;Parent=Msa0386560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
