AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1107250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107250 MtrunA17_Chr7g0240521 94.667 225 12 0 1 225 8 232 1.85e-146 407
Msa1107250 MtrunA17_Chr7g0240561 77.333 225 50 1 1 225 1 224 6.99e-122 345
Msa1107250 MtrunA17_Chr7g0240511 77.778 225 44 2 1 225 1 219 6.96e-120 340
Msa1107250 MtrunA17_Chr7g0240551 75.556 225 54 1 1 225 1 224 1.18e-119 339
Msa1107250 MtrunA17_Chr7g0240581 75.111 225 55 1 1 225 1 224 2.35e-119 338
Msa1107250 MtrunA17_Chr7g0240531 74.222 225 57 1 1 225 1 224 2.11e-114 326
Msa1107250 MtrunA17_Chr7g0240541 73.333 225 59 1 1 225 1 224 3.98e-114 325
Msa1107250 MtrunA17_Chr7g0240631 67.699 226 71 2 1 225 1 225 1.01e-108 311
Msa1107250 MtrunA17_Chr7g0240641 66.814 226 73 2 1 225 1 225 4.25e-106 305
Msa1107250 MtrunA17_Chr7g0240681 65.929 226 75 2 1 225 1 225 2.19e-105 303
Msa1107250 MtrunA17_Chr4g0008791 61.161 224 86 1 1 224 1 223 2.78e-99 288
Msa1107250 MtrunA17_Chr7g0240611 63.393 224 77 2 1 224 1 219 2.33e-95 278
Msa1107250 MtrunA17_Chr7g0240691 59.091 220 88 2 6 224 36 254 1.03e-92 272
Msa1107250 MtrunA17_Chr4g0008781 59.361 219 87 2 2 219 3 220 1.20e-87 258
Msa1107250 MtrunA17_Chr7g0240671 62.312 199 71 1 8 206 5 199 1.50e-83 248
Msa1107250 MtrunA17_Chr7g0240651 61.435 223 81 2 1 223 1 218 2.75e-81 242
Msa1107250 MtrunA17_Chr7g0240661 62.621 206 73 1 1 206 1 202 8.87e-78 233
Msa1107250 MtrunA17_Chr3g0132581 47.964 221 112 3 5 224 3 221 3.79e-59 186
Msa1107250 MtrunA17_Chr1g0212301 45.495 222 110 3 7 221 3 220 1.63e-58 184
Msa1107250 MtrunA17_Chr1g0196771 45.701 221 114 4 6 223 2 219 1.67e-58 184
Msa1107250 MtrunA17_Chr6g0483141 45.495 222 117 3 7 225 3 223 3.09e-58 183
Msa1107250 MtrunA17_Chr8g0379581 44.651 215 117 2 4 217 2 215 1.44e-56 179
Msa1107250 MtrunA17_Chr8g0379561 46.667 225 107 5 1 219 1 218 3.28e-56 178
Msa1107250 MtrunA17_Chr1g0196691 44.144 222 118 4 7 224 28 247 6.41e-53 171
Msa1107250 MtrunA17_Chr1g0196711 44.340 212 111 5 7 214 3 211 1.39e-51 166
Msa1107250 MtrunA17_Chr5g0417011 42.009 219 118 4 1 212 1 217 3.73e-51 165
Msa1107250 MtrunA17_Chr1g0196661 42.478 226 117 6 7 225 3 222 8.45e-50 162
Msa1107250 MtrunA17_Chr4g0029341 42.922 219 110 6 6 216 3 214 2.19e-49 160
Msa1107250 MtrunA17_Chr1g0196721 42.342 222 119 7 8 224 3 220 5.88e-49 159
Msa1107250 MtrunA17_Chr8g0363751 44.344 221 112 7 5 216 3 221 9.58e-49 159
Msa1107250 MtrunA17_Chr5g0415411 44.601 213 106 5 1 204 1 210 1.09e-48 159
Msa1107250 MtrunA17_Chr2g0312791 40.476 210 121 3 6 213 3 210 8.85e-41 139
Msa1107250 MtrunA17_Chr3g0107731 45.026 191 100 5 16 204 18 205 6.82e-40 136
Msa1107250 MtrunA17_Chr2g0312731 40.291 206 108 7 6 204 3 200 7.55e-39 134
Msa1107250 MtrunA17_Chr3g0107741 41.872 203 113 5 4 204 6 205 2.70e-38 132
Msa1107250 MtrunA17_Chr2g0312771 39.216 204 113 5 6 204 3 200 5.29e-38 131
Msa1107250 MtrunA17_Chr8g0391631 47.742 155 73 4 7 153 21 175 1.19e-37 129
Msa1107250 MtrunA17_Chr2g0312751 40.838 191 102 5 6 191 3 187 1.44e-37 130
Msa1107250 MtrunA17_Chr4g0069471 45.251 179 92 5 3 177 21 197 1.76e-37 129
Msa1107250 MtrunA17_Chr2g0312721 40.212 189 106 5 6 191 3 187 2.51e-37 130
Msa1107250 MtrunA17_Chr2g0312781 36.538 208 127 4 1 206 15 219 8.89e-36 126
Msa1107250 MtrunA17_Chr8g0357241 37.864 206 123 4 6 209 3 205 9.88e-36 125
Msa1107250 MtrunA17_Chr8g0357211 40.426 188 107 4 6 191 3 187 2.71e-35 124
Msa1107250 MtrunA17_Chr2g0312811 39.901 203 115 5 6 204 3 202 5.66e-34 121
Msa1107250 MtrunA17_Chr2g0312691 37.561 205 123 4 7 209 4 205 1.17e-33 120
Msa1107250 MtrunA17_Chr2g0312681 38.119 202 120 4 7 206 4 202 4.02e-33 119
Msa1107250 MtrunA17_Chr5g0433801 37.561 205 121 5 3 204 2 202 7.37e-33 118
Msa1107250 MtrunA17_Chr2g0312711 35.577 208 112 5 7 204 4 199 4.49e-27 103
Msa1107250 MtrunA17_Chr2g0313561 48.276 58 29 1 51 107 2 59 2.00e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1107250 AT2G29420.1 50.455 220 106 3 3 221 5 222 2.06e-68 210
Msa1107250 AT3G09270.1 48.000 225 112 5 3 224 2 224 2.70e-64 199
Msa1107250 AT2G29490.1 50.000 208 101 3 1 206 1 207 1.05e-57 182
Msa1107250 AT2G29450.1 46.847 222 112 3 3 218 2 223 1.05e-56 180
Msa1107250 AT2G29480.1 48.077 208 105 3 1 206 1 207 2.60e-56 179
Msa1107250 AT2G29460.1 46.698 212 110 3 1 210 1 211 1.86e-55 177
Msa1107250 AT2G29470.1 46.890 209 107 4 1 206 1 208 7.01e-52 167
Msa1107250 AT2G29440.1 45.673 208 109 4 1 206 1 206 8.66e-50 162
Msa1107250 AT1G10370.1 43.396 212 109 6 1 204 1 209 1.07e-49 162
Msa1107250 AT1G69930.1 41.364 220 122 3 2 215 7 225 1.18e-49 162
Msa1107250 AT1G59700.1 45.887 231 111 8 5 223 4 232 3.72e-48 158
Msa1107250 AT1G59670.1 44.498 209 106 5 5 204 4 211 8.87e-47 155
Msa1107250 AT5G62480.1 42.081 221 114 5 8 215 9 228 2.08e-45 151
Msa1107250 AT1G69920.1 39.450 218 122 5 1 208 26 243 6.23e-44 148
Msa1107250 AT1G10360.1 38.073 218 125 5 6 215 4 219 7.52e-44 147
Msa1107250 AT1G27130.1 38.222 225 129 5 1 217 1 223 1.47e-43 146
Msa1107250 AT1G78370.1 42.932 191 104 4 16 204 13 200 5.73e-43 144
Msa1107250 AT1G78380.1 43.000 200 109 4 7 204 4 200 1.20e-42 144
Msa1107250 AT1G74590.1 38.095 231 134 5 1 224 1 229 1.64e-42 144
Msa1107250 AT1G78320.1 43.069 202 110 4 5 204 2 200 3.37e-41 140
Msa1107250 AT1G78340.1 43.678 174 95 3 6 177 3 175 1.83e-40 138
Msa1107250 AT1G53680.1 39.614 207 120 4 1 204 1 205 5.91e-38 132
Msa1107250 AT1G27140.1 35.681 213 127 4 1 204 1 212 2.52e-36 128
Msa1107250 AT1G17170.1 38.356 219 128 5 6 222 3 216 2.77e-36 127
Msa1107250 AT1G17180.1 39.303 201 117 4 6 204 3 200 8.33e-35 124
Msa1107250 AT1G17190.1 40.526 190 104 5 6 191 4 188 2.27e-34 122
Msa1107250 AT3G43800.1 36.967 211 124 6 4 208 2 209 1.68e-32 118
Msa1107250 AT1G78360.1 38.806 201 117 5 7 204 4 201 6.37e-32 116
Msa1107250 AT5G62480.2 33.636 220 108 5 8 215 9 202 9.20e-28 105
Msa1107250 AT5G62480.3 33.636 220 107 5 8 215 9 201 1.81e-27 104
Msa1107250 AT1G78320.2 35.323 201 100 4 5 204 2 173 1.29e-24 96.7
Msa1107250 AT2G02390.1 28.037 214 135 5 3 204 4 210 1.25e-12 65.1
Msa1107250 AT2G02380.1 26.887 212 136 5 5 204 9 213 2.95e-12 64.3
Msa1107250 AT2G02390.3 28.054 221 133 7 3 204 4 217 4.28e-12 63.9

Find 53 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAATAAATTAGTTTA+AGG 0.078938 7_3:+48769424 Msa1107250:exon
AAAGAGCCTTGGCACGTTTC+TGG 0.188650 7_3:+48768393 Msa1107250:CDS
GATATTTATTCGGGTGATTT+AGG 0.203997 7_3:+48769448 Msa1107250:three_prime_UTR
CAAGGATCAGAAGGCAATAT+TGG 0.248748 7_3:-48768368 None:intergenic
ATTGGCCTTGTTGACATTAC+TGG 0.271417 7_3:+48769210 Msa1107250:CDS
AATCTACTTGTTTCTCAGTT+TGG 0.305667 7_3:+48769481 Msa1107250:three_prime_UTR
AGTTTAAGGTGATATTTATT+CGG 0.309711 7_3:+48769438 Msa1107250:three_prime_UTR
CACTACGATGGCATCAAATA+AGG 0.335978 7_3:+48768109 Msa1107250:exon
GTTTAAGGTGATATTTATTC+GGG 0.339064 7_3:+48769439 Msa1107250:three_prime_UTR
ACAGGAACTTTCTTATAAAC+AGG 0.340787 7_3:-48768269 None:intergenic
GAGCTCAAAGACAAGTTCTT+TGG 0.355329 7_3:+48769177 Msa1107250:CDS
TGGCTCCAATTGAATAACTT+TGG 0.369360 7_3:-48769306 None:intergenic
GAGAAGGGTATTGAGGAAAC+AGG 0.385822 7_3:+48769129 Msa1107250:CDS
CCTATTACTTCTTCTACAAT+GGG 0.398317 7_3:-48769255 None:intergenic
TCCTATTACTTCTTCTACAA+TGG 0.401929 7_3:-48769256 None:intergenic
TACTTTATCATCAATGAACT+TGG 0.405599 7_3:-48768417 None:intergenic
CCCATTGTAGAAGAAGTAAT+AGG 0.407102 7_3:+48769255 Msa1107250:CDS
AATTTCCAAAGTTATTCAAT+TGG 0.415545 7_3:+48769301 Msa1107250:CDS
TTGGGTGGTTATTGAAGTCT+TGG 0.422102 7_3:-48769326 None:intergenic
TCCTAGACTAGAAACCCTTT+TGG 0.422199 7_3:+48769368 Msa1107250:CDS
ATCTCCACCCTGCACACAAA+TGG 0.430527 7_3:-48768164 None:intergenic
ATCACAAGGGATTCTGATAT+AGG 0.433145 7_3:-48768311 None:intergenic
TTCTTTGGTGGAGAAGAGAT+TGG 0.437865 7_3:+48769192 Msa1107250:CDS
GAGATCTTTCGAAGGCCAAA+AGG 0.460962 7_3:-48769383 None:intergenic
AGAGATTGAGAAGGGTATTG+AGG 0.468601 7_3:+48769122 Msa1107250:CDS
CTCAAAGACAAGTTCTTTGG+TGG 0.495298 7_3:+48769180 Msa1107250:CDS
TTGAGTATATTGATGAGACT+TGG 0.504629 7_3:+48768336 Msa1107250:CDS
AGGAGTTGAATACAAATATG+AGG 0.510242 7_3:+48768202 Msa1107250:CDS
TAACAAGAATAGTACAAAAG+AGG 0.512706 7_3:-48769567 None:intergenic
TGATCCTTGTAAAAGAGCCT+TGG 0.517207 7_3:+48768382 Msa1107250:CDS
TTATCATTATGAACTAATAC+AGG 0.517988 7_3:-48768287 None:intergenic
AGTGGCTCTTCAATTTCTTG+AGG 0.533010 7_3:+48769152 Msa1107250:CDS
GCCAAAAGGGTTTCTAGTCT+AGG 0.536473 7_3:-48769369 None:intergenic
GATGAGAAAGAGATTGAGAA+GGG 0.537394 7_3:+48769114 Msa1107250:CDS
AGATCTTTCGAAGGCCAAAA+GGG 0.542519 7_3:-48769382 None:intergenic
AGGCAAGTCCATTTGTGTGC+AGG 0.542935 7_3:+48768156 Msa1107250:CDS
GGCAAGTCCATTTGTGTGCA+GGG 0.572089 7_3:+48768157 Msa1107250:CDS
TGATGAGAAAGAGATTGAGA+AGG 0.573160 7_3:+48769113 Msa1107250:CDS
GATGGCATCAAATAAGGAAG+AGG 0.575114 7_3:+48768115 Msa1107250:exon
GAGATTGCTCTAAAACTGAA+AGG 0.585304 7_3:+48768182 Msa1107250:CDS
AATCTCTTTCTCATCAAGAG+TGG 0.590956 7_3:-48769106 None:intergenic
CAATATACTCAAGAATCACA+AGG 0.601780 7_3:-48768325 None:intergenic
CAATAACCACCCAATTGTCA+AGG 0.611678 7_3:+48769335 Msa1107250:CDS
TTCAGAACGAGATCTTTCGA+AGG 0.621786 7_3:-48769391 None:intergenic
AAAAGGGTTTCTAGTCTAGG+AGG 0.639156 7_3:-48769366 None:intergenic
GGGTATTGAGGAAACAGGAG+TGG 0.669933 7_3:+48769134 Msa1107250:CDS
AATATACTCAAGAATCACAA+GGG 0.678725 7_3:-48768324 None:intergenic
CTTGGACCAGAAACGTGCCA+AGG 0.686787 7_3:-48768399 None:intergenic
TACAAAAGAGGATAAACACA+AGG 0.694346 7_3:-48769555 None:intergenic
AGACTCCAGTAATGTCAACA+AGG 0.694962 7_3:-48769215 None:intergenic
AAATAAGTGAAACACTACGA+TGG 0.711385 7_3:+48768097 Msa1107250:exon
CTATTACTTCTTCTACAATG+GGG 0.725460 7_3:-48769254 None:intergenic
AAGTCCATTTGTGTGCAGGG+TGG 0.735254 7_3:+48768160 Msa1107250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAACCAAAAAAATTA+TGG - chr7_3:48768710-48768729 None:intergenic 10.0%
!! AAGGATTAAAATATATTTAA+GGG - chr7_3:48768742-48768761 None:intergenic 10.0%
!!! CTCTAAAAAAAATAAAAATA+GGG - chr7_3:48768973-48768992 None:intergenic 10.0%
!! TTATTTAACCAAAAAAATTA+TGG - chr7_3:48768710-48768729 None:intergenic 10.0%
!! AAGGATTAAAATATATTTAA+GGG - chr7_3:48768742-48768761 None:intergenic 10.0%
!!! CTCTAAAAAAAATAAAAATA+GGG - chr7_3:48768973-48768992 None:intergenic 10.0%
!!! TTATTTTAACTAAAAACACA+CGG + chr7_3:48768593-48768612 Msa1107250:intron 15.0%
!! GAAGGATTAAAATATATTTA+AGG - chr7_3:48768743-48768762 None:intergenic 15.0%
!!! TAAAATATTTCTTAGACTTT+TGG + chr7_3:48768763-48768782 Msa1107250:intron 15.0%
!!! ATGAATGAAAAATTTTAGAA+GGG - chr7_3:48768789-48768808 None:intergenic 15.0%
!!! AATTTTTCATTCATGAAATT+AGG + chr7_3:48768795-48768814 Msa1107250:intron 15.0%
!!! CCTCTAAAAAAAATAAAAAT+AGG - chr7_3:48768974-48768993 None:intergenic 15.0%
!!! CCTATTTTTATTTTTTTTAG+AGG + chr7_3:48768971-48768990 Msa1107250:intron 15.0%
!!! CTTCAAAATAAATTAGTTTA+AGG + chr7_3:48769424-48769443 Msa1107250:exon 15.0%
!!! TTATTTTAACTAAAAACACA+CGG + chr7_3:48768593-48768612 Msa1107250:intron 15.0%
!! GAAGGATTAAAATATATTTA+AGG - chr7_3:48768743-48768762 None:intergenic 15.0%
!!! TAAAATATTTCTTAGACTTT+TGG + chr7_3:48768763-48768782 Msa1107250:intron 15.0%
!!! ATGAATGAAAAATTTTAGAA+GGG - chr7_3:48768789-48768808 None:intergenic 15.0%
!!! AATTTTTCATTCATGAAATT+AGG + chr7_3:48768795-48768814 Msa1107250:intron 15.0%
!!! CCTCTAAAAAAAATAAAAAT+AGG - chr7_3:48768974-48768993 None:intergenic 15.0%
!!! CCTATTTTTATTTTTTTTAG+AGG + chr7_3:48768971-48768990 Msa1107250:intron 15.0%
!!! CTTCAAAATAAATTAGTTTA+AGG + chr7_3:48769424-48769443 Msa1107250:exon 15.0%
!! TTATCATTATGAACTAATAC+AGG - chr7_3:48768290-48768309 None:intergenic 20.0%
!!! AGTCTAAGAAATATTTTAGA+AGG - chr7_3:48768761-48768780 None:intergenic 20.0%
!!! CATGAATGAAAAATTTTAGA+AGG - chr7_3:48768790-48768809 None:intergenic 20.0%
!!! AAAAGCCTAAGAAATATTTT+AGG + chr7_3:48768896-48768915 Msa1107250:intron 20.0%
!! AATCAAACATTGGTATATTT+AGG + chr7_3:48768927-48768946 Msa1107250:intron 20.0%
!! AATAGGGTTAAATAAGTAAA+TGG - chr7_3:48768957-48768976 None:intergenic 20.0%
!! AATTTCCAAAGTTATTCAAT+TGG + chr7_3:48769301-48769320 Msa1107250:CDS 20.0%
!!! AGTTTAAGGTGATATTTATT+CGG + chr7_3:48769438-48769457 Msa1107250:three_prime_UTR 20.0%
!! TTATCATTATGAACTAATAC+AGG - chr7_3:48768290-48768309 None:intergenic 20.0%
!!! AGTCTAAGAAATATTTTAGA+AGG - chr7_3:48768761-48768780 None:intergenic 20.0%
!!! CATGAATGAAAAATTTTAGA+AGG - chr7_3:48768790-48768809 None:intergenic 20.0%
!!! AAAAGCCTAAGAAATATTTT+AGG + chr7_3:48768896-48768915 Msa1107250:intron 20.0%
!! AATCAAACATTGGTATATTT+AGG + chr7_3:48768927-48768946 Msa1107250:intron 20.0%
!! AATAGGGTTAAATAAGTAAA+TGG - chr7_3:48768957-48768976 None:intergenic 20.0%
!! AATTTCCAAAGTTATTCAAT+TGG + chr7_3:48769301-48769320 Msa1107250:CDS 20.0%
!!! AGTTTAAGGTGATATTTATT+CGG + chr7_3:48769438-48769457 Msa1107250:three_prime_UTR 20.0%
! AATATACTCAAGAATCACAA+GGG - chr7_3:48768327-48768346 None:intergenic 25.0%
! TACTTTATCATCAATGAACT+TGG - chr7_3:48768420-48768439 None:intergenic 25.0%
!! GTTTAAGGTGATATTTATTC+GGG + chr7_3:48769439-48769458 Msa1107250:three_prime_UTR 25.0%
! TAACAAGAATAGTACAAAAG+AGG - chr7_3:48769570-48769589 None:intergenic 25.0%
! AATATACTCAAGAATCACAA+GGG - chr7_3:48768327-48768346 None:intergenic 25.0%
! TACTTTATCATCAATGAACT+TGG - chr7_3:48768420-48768439 None:intergenic 25.0%
!! GTTTAAGGTGATATTTATTC+GGG + chr7_3:48769439-48769458 Msa1107250:three_prime_UTR 25.0%
! TAACAAGAATAGTACAAAAG+AGG - chr7_3:48769570-48769589 None:intergenic 25.0%
AAATAAGTGAAACACTACGA+TGG + chr7_3:48768097-48768116 Msa1107250:exon 30.0%
AGGAGTTGAATACAAATATG+AGG + chr7_3:48768202-48768221 Msa1107250:CDS 30.0%
ACAGGAACTTTCTTATAAAC+AGG - chr7_3:48768272-48768291 None:intergenic 30.0%
CAATATACTCAAGAATCACA+AGG - chr7_3:48768328-48768347 None:intergenic 30.0%
TTGAGTATATTGATGAGACT+TGG + chr7_3:48768336-48768355 Msa1107250:CDS 30.0%
GATGTTCATCTCAAATCAAA+TGG - chr7_3:48768632-48768651 None:intergenic 30.0%
! AATTTTACAGCACTAAAACC+TGG + chr7_3:48768683-48768702 Msa1107250:intron 30.0%
!!! AACCTGGTCCATAATTTTTT+TGG + chr7_3:48768699-48768718 Msa1107250:intron 30.0%
AACCAAAAAAATTATGGACC+AGG - chr7_3:48768704-48768723 None:intergenic 30.0%
!!! CACTATTTTTTTAACAGCAG+AGG + chr7_3:48768840-48768859 Msa1107250:intron 30.0%
!!! TCATGGACGAAATTTTTTTG+AGG + chr7_3:48768869-48768888 Msa1107250:intron 30.0%
!!! CATGGACGAAATTTTTTTGA+GGG + chr7_3:48768870-48768889 Msa1107250:intron 30.0%
!! AGCCTAAGAAATATTTTAGG+AGG + chr7_3:48768899-48768918 Msa1107250:intron 30.0%
GTCCTCCTAAAATATTTCTT+AGG - chr7_3:48768904-48768923 None:intergenic 30.0%
CTATTACTTCTTCTACAATG+GGG - chr7_3:48769257-48769276 None:intergenic 30.0%
CCTATTACTTCTTCTACAAT+GGG - chr7_3:48769258-48769277 None:intergenic 30.0%
TCCTATTACTTCTTCTACAA+TGG - chr7_3:48769259-48769278 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG - chr7_3:48769347-48769366 None:intergenic 30.0%
GATATTTATTCGGGTGATTT+AGG + chr7_3:48769448-48769467 Msa1107250:three_prime_UTR 30.0%
! AATCTACTTGTTTCTCAGTT+TGG + chr7_3:48769481-48769500 Msa1107250:three_prime_UTR 30.0%
TACAAAAGAGGATAAACACA+AGG - chr7_3:48769558-48769577 None:intergenic 30.0%
AAATAAGTGAAACACTACGA+TGG + chr7_3:48768097-48768116 Msa1107250:exon 30.0%
AGGAGTTGAATACAAATATG+AGG + chr7_3:48768202-48768221 Msa1107250:CDS 30.0%
ACAGGAACTTTCTTATAAAC+AGG - chr7_3:48768272-48768291 None:intergenic 30.0%
CAATATACTCAAGAATCACA+AGG - chr7_3:48768328-48768347 None:intergenic 30.0%
TTGAGTATATTGATGAGACT+TGG + chr7_3:48768336-48768355 Msa1107250:CDS 30.0%
GATGTTCATCTCAAATCAAA+TGG - chr7_3:48768632-48768651 None:intergenic 30.0%
! AATTTTACAGCACTAAAACC+TGG + chr7_3:48768683-48768702 Msa1107250:intron 30.0%
!!! AACCTGGTCCATAATTTTTT+TGG + chr7_3:48768699-48768718 Msa1107250:intron 30.0%
AACCAAAAAAATTATGGACC+AGG - chr7_3:48768704-48768723 None:intergenic 30.0%
!!! CACTATTTTTTTAACAGCAG+AGG + chr7_3:48768840-48768859 Msa1107250:intron 30.0%
!!! TCATGGACGAAATTTTTTTG+AGG + chr7_3:48768869-48768888 Msa1107250:intron 30.0%
!!! CATGGACGAAATTTTTTTGA+GGG + chr7_3:48768870-48768889 Msa1107250:intron 30.0%
!! AGCCTAAGAAATATTTTAGG+AGG + chr7_3:48768899-48768918 Msa1107250:intron 30.0%
GTCCTCCTAAAATATTTCTT+AGG - chr7_3:48768904-48768923 None:intergenic 30.0%
CTATTACTTCTTCTACAATG+GGG - chr7_3:48769257-48769276 None:intergenic 30.0%
CCTATTACTTCTTCTACAAT+GGG - chr7_3:48769258-48769277 None:intergenic 30.0%
TCCTATTACTTCTTCTACAA+TGG - chr7_3:48769259-48769278 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG - chr7_3:48769347-48769366 None:intergenic 30.0%
GATATTTATTCGGGTGATTT+AGG + chr7_3:48769448-48769467 Msa1107250:three_prime_UTR 30.0%
! AATCTACTTGTTTCTCAGTT+TGG + chr7_3:48769481-48769500 Msa1107250:three_prime_UTR 30.0%
TACAAAAGAGGATAAACACA+AGG - chr7_3:48769558-48769577 None:intergenic 30.0%
!! GAGATTGCTCTAAAACTGAA+AGG + chr7_3:48768182-48768201 Msa1107250:CDS 35.0%
ATCACAAGGGATTCTGATAT+AGG - chr7_3:48768314-48768333 None:intergenic 35.0%
AAAATTAGAGAGAGAGAGAG+AGG - chr7_3:48768447-48768466 None:intergenic 35.0%
! TCACACACACACACAATTTT+TGG + chr7_3:48768491-48768510 Msa1107250:intron 35.0%
!!! ACACACACAATTTTTGGAAC+AGG + chr7_3:48768497-48768516 Msa1107250:intron 35.0%
ACCTTTCAATTGTGATCAGA+CGG - chr7_3:48768568-48768587 None:intergenic 35.0%
GGAGGACTAAAATCAAACAT+TGG + chr7_3:48768917-48768936 Msa1107250:intron 35.0%
!! ACCTTAATTTGTGAGACTAG+TGG + chr7_3:48769058-48769077 Msa1107250:intron 35.0%
! ACCACTAGTCTCACAAATTA+AGG - chr7_3:48769062-48769081 None:intergenic 35.0%
! TAATTTGTGAGACTAGTGGT+TGG + chr7_3:48769062-48769081 Msa1107250:intron 35.0%
AATCTCTTTCTCATCAAGAG+TGG - chr7_3:48769109-48769128 None:intergenic 35.0%
TGATGAGAAAGAGATTGAGA+AGG + chr7_3:48769113-48769132 Msa1107250:CDS 35.0%
GATGAGAAAGAGATTGAGAA+GGG + chr7_3:48769114-48769133 Msa1107250:CDS 35.0%
CCCATTGTAGAAGAAGTAAT+AGG + chr7_3:48769255-48769274 Msa1107250:CDS 35.0%
TGGCTCCAATTGAATAACTT+TGG - chr7_3:48769309-48769328 None:intergenic 35.0%
! AATTTTCCTTGACAATTGGG+TGG - chr7_3:48769344-48769363 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG - chr7_3:48769348-48769367 None:intergenic 35.0%
!! GAGATTGCTCTAAAACTGAA+AGG + chr7_3:48768182-48768201 Msa1107250:CDS 35.0%
ATCACAAGGGATTCTGATAT+AGG - chr7_3:48768314-48768333 None:intergenic 35.0%
AAAATTAGAGAGAGAGAGAG+AGG - chr7_3:48768447-48768466 None:intergenic 35.0%
! TCACACACACACACAATTTT+TGG + chr7_3:48768491-48768510 Msa1107250:intron 35.0%
!!! ACACACACAATTTTTGGAAC+AGG + chr7_3:48768497-48768516 Msa1107250:intron 35.0%
ACCTTTCAATTGTGATCAGA+CGG - chr7_3:48768568-48768587 None:intergenic 35.0%
GGAGGACTAAAATCAAACAT+TGG + chr7_3:48768917-48768936 Msa1107250:intron 35.0%
!! ACCTTAATTTGTGAGACTAG+TGG + chr7_3:48769058-48769077 Msa1107250:intron 35.0%
! ACCACTAGTCTCACAAATTA+AGG - chr7_3:48769062-48769081 None:intergenic 35.0%
! TAATTTGTGAGACTAGTGGT+TGG + chr7_3:48769062-48769081 Msa1107250:intron 35.0%
AATCTCTTTCTCATCAAGAG+TGG - chr7_3:48769109-48769128 None:intergenic 35.0%
TGATGAGAAAGAGATTGAGA+AGG + chr7_3:48769113-48769132 Msa1107250:CDS 35.0%
GATGAGAAAGAGATTGAGAA+GGG + chr7_3:48769114-48769133 Msa1107250:CDS 35.0%
CCCATTGTAGAAGAAGTAAT+AGG + chr7_3:48769255-48769274 Msa1107250:CDS 35.0%
TGGCTCCAATTGAATAACTT+TGG - chr7_3:48769309-48769328 None:intergenic 35.0%
! AATTTTCCTTGACAATTGGG+TGG - chr7_3:48769344-48769363 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG - chr7_3:48769348-48769367 None:intergenic 35.0%
CACTACGATGGCATCAAATA+AGG + chr7_3:48768109-48768128 Msa1107250:exon 40.0%
GATGGCATCAAATAAGGAAG+AGG + chr7_3:48768115-48768134 Msa1107250:exon 40.0%
! AAGGAAGAGGTGAAGCTTTT+TGG + chr7_3:48768128-48768147 Msa1107250:CDS 40.0%
!!! GGTGAAGCTTTTTGGAATGA+AGG + chr7_3:48768136-48768155 Msa1107250:CDS 40.0%
CAAGGATCAGAAGGCAATAT+TGG - chr7_3:48768371-48768390 None:intergenic 40.0%
! GCTCTTTTACAAGGATCAGA+AGG - chr7_3:48768380-48768399 None:intergenic 40.0%
TGATCCTTGTAAAAGAGCCT+TGG + chr7_3:48768382-48768401 Msa1107250:CDS 40.0%
ATTGTGTGTGTGTGTGAAGT+TGG - chr7_3:48768488-48768507 None:intergenic 40.0%
AATTAGCACACAGTTTCACG+CGG - chr7_3:48768667-48768686 None:intergenic 40.0%
AACAGCAGAGGCTAATTTCA+TGG + chr7_3:48768852-48768871 Msa1107250:intron 40.0%
!! AGAGATTGAGAAGGGTATTG+AGG + chr7_3:48769122-48769141 Msa1107250:CDS 40.0%
AGTGGCTCTTCAATTTCTTG+AGG + chr7_3:48769152-48769171 Msa1107250:CDS 40.0%
GAGCTCAAAGACAAGTTCTT+TGG + chr7_3:48769177-48769196 Msa1107250:CDS 40.0%
CTCAAAGACAAGTTCTTTGG+TGG + chr7_3:48769180-48769199 Msa1107250:CDS 40.0%
TTCTTTGGTGGAGAAGAGAT+TGG + chr7_3:48769192-48769211 Msa1107250:CDS 40.0%
!! ATTGGCCTTGTTGACATTAC+TGG + chr7_3:48769210-48769229 Msa1107250:CDS 40.0%
AGACTCCAGTAATGTCAACA+AGG - chr7_3:48769218-48769237 None:intergenic 40.0%
! CTGGAGTCTTCGTATCTTTT+TGG + chr7_3:48769229-48769248 Msa1107250:CDS 40.0%
TTGGGTGGTTATTGAAGTCT+TGG - chr7_3:48769329-48769348 None:intergenic 40.0%
CAATAACCACCCAATTGTCA+AGG + chr7_3:48769335-48769354 Msa1107250:CDS 40.0%
!! AAAAGGGTTTCTAGTCTAGG+AGG - chr7_3:48769369-48769388 None:intergenic 40.0%
! TCCTAGACTAGAAACCCTTT+TGG + chr7_3:48769368-48769387 Msa1107250:CDS 40.0%
AGATCTTTCGAAGGCCAAAA+GGG - chr7_3:48769385-48769404 None:intergenic 40.0%
TTCAGAACGAGATCTTTCGA+AGG - chr7_3:48769394-48769413 None:intergenic 40.0%
CACTACGATGGCATCAAATA+AGG + chr7_3:48768109-48768128 Msa1107250:exon 40.0%
GATGGCATCAAATAAGGAAG+AGG + chr7_3:48768115-48768134 Msa1107250:exon 40.0%
! AAGGAAGAGGTGAAGCTTTT+TGG + chr7_3:48768128-48768147 Msa1107250:CDS 40.0%
!!! GGTGAAGCTTTTTGGAATGA+AGG + chr7_3:48768136-48768155 Msa1107250:CDS 40.0%
CAAGGATCAGAAGGCAATAT+TGG - chr7_3:48768371-48768390 None:intergenic 40.0%
! GCTCTTTTACAAGGATCAGA+AGG - chr7_3:48768380-48768399 None:intergenic 40.0%
TGATCCTTGTAAAAGAGCCT+TGG + chr7_3:48768382-48768401 Msa1107250:CDS 40.0%
ATTGTGTGTGTGTGTGAAGT+TGG - chr7_3:48768488-48768507 None:intergenic 40.0%
AATTAGCACACAGTTTCACG+CGG - chr7_3:48768667-48768686 None:intergenic 40.0%
AACAGCAGAGGCTAATTTCA+TGG + chr7_3:48768852-48768871 Msa1107250:intron 40.0%
!! AGAGATTGAGAAGGGTATTG+AGG + chr7_3:48769122-48769141 Msa1107250:CDS 40.0%
AGTGGCTCTTCAATTTCTTG+AGG + chr7_3:48769152-48769171 Msa1107250:CDS 40.0%
GAGCTCAAAGACAAGTTCTT+TGG + chr7_3:48769177-48769196 Msa1107250:CDS 40.0%
CTCAAAGACAAGTTCTTTGG+TGG + chr7_3:48769180-48769199 Msa1107250:CDS 40.0%
TTCTTTGGTGGAGAAGAGAT+TGG + chr7_3:48769192-48769211 Msa1107250:CDS 40.0%
!! ATTGGCCTTGTTGACATTAC+TGG + chr7_3:48769210-48769229 Msa1107250:CDS 40.0%
AGACTCCAGTAATGTCAACA+AGG - chr7_3:48769218-48769237 None:intergenic 40.0%
! CTGGAGTCTTCGTATCTTTT+TGG + chr7_3:48769229-48769248 Msa1107250:CDS 40.0%
TTGGGTGGTTATTGAAGTCT+TGG - chr7_3:48769329-48769348 None:intergenic 40.0%
CAATAACCACCCAATTGTCA+AGG + chr7_3:48769335-48769354 Msa1107250:CDS 40.0%
!! AAAAGGGTTTCTAGTCTAGG+AGG - chr7_3:48769369-48769388 None:intergenic 40.0%
! TCCTAGACTAGAAACCCTTT+TGG + chr7_3:48769368-48769387 Msa1107250:CDS 40.0%
AGATCTTTCGAAGGCCAAAA+GGG - chr7_3:48769385-48769404 None:intergenic 40.0%
TTCAGAACGAGATCTTTCGA+AGG - chr7_3:48769394-48769413 None:intergenic 40.0%
GCCGTCTGATCACAATTGAA+AGG + chr7_3:48768564-48768583 Msa1107250:intron 45.0%
!! GAGAAGGGTATTGAGGAAAC+AGG + chr7_3:48769129-48769148 Msa1107250:CDS 45.0%
!! GCCAAAAGGGTTTCTAGTCT+AGG - chr7_3:48769372-48769391 None:intergenic 45.0%
GAGATCTTTCGAAGGCCAAA+AGG - chr7_3:48769386-48769405 None:intergenic 45.0%
GCCGTCTGATCACAATTGAA+AGG + chr7_3:48768564-48768583 Msa1107250:intron 45.0%
!! GAGAAGGGTATTGAGGAAAC+AGG + chr7_3:48769129-48769148 Msa1107250:CDS 45.0%
!! GCCAAAAGGGTTTCTAGTCT+AGG - chr7_3:48769372-48769391 None:intergenic 45.0%
GAGATCTTTCGAAGGCCAAA+AGG - chr7_3:48769386-48769405 None:intergenic 45.0%
AGGCAAGTCCATTTGTGTGC+AGG + chr7_3:48768156-48768175 Msa1107250:CDS 50.0%
GGCAAGTCCATTTGTGTGCA+GGG + chr7_3:48768157-48768176 Msa1107250:CDS 50.0%
AAGTCCATTTGTGTGCAGGG+TGG + chr7_3:48768160-48768179 Msa1107250:CDS 50.0%
ATCTCCACCCTGCACACAAA+TGG - chr7_3:48768167-48768186 None:intergenic 50.0%
! CGTGCCAAGGCTCTTTTACA+AGG - chr7_3:48768389-48768408 None:intergenic 50.0%
AAAGAGCCTTGGCACGTTTC+TGG + chr7_3:48768393-48768412 Msa1107250:CDS 50.0%
!! GGGTATTGAGGAAACAGGAG+TGG + chr7_3:48769134-48769153 Msa1107250:CDS 50.0%
AGGCAAGTCCATTTGTGTGC+AGG + chr7_3:48768156-48768175 Msa1107250:CDS 50.0%
GGCAAGTCCATTTGTGTGCA+GGG + chr7_3:48768157-48768176 Msa1107250:CDS 50.0%
AAGTCCATTTGTGTGCAGGG+TGG + chr7_3:48768160-48768179 Msa1107250:CDS 50.0%
ATCTCCACCCTGCACACAAA+TGG - chr7_3:48768167-48768186 None:intergenic 50.0%
! CGTGCCAAGGCTCTTTTACA+AGG - chr7_3:48768389-48768408 None:intergenic 50.0%
AAAGAGCCTTGGCACGTTTC+TGG + chr7_3:48768393-48768412 Msa1107250:CDS 50.0%
!! GGGTATTGAGGAAACAGGAG+TGG + chr7_3:48769134-48769153 Msa1107250:CDS 50.0%
CTTGGACCAGAAACGTGCCA+AGG - chr7_3:48768402-48768421 None:intergenic 55.0%
! CTGCTGACTGCTGTAACAGC+AGG - chr7_3:48768526-48768545 None:intergenic 55.0%
CTGCTGTTACAGCAGTCAGC+AGG + chr7_3:48768524-48768543 Msa1107250:intron 55.0%
CTTGGACCAGAAACGTGCCA+AGG - chr7_3:48768402-48768421 None:intergenic 55.0%
! CTGCTGACTGCTGTAACAGC+AGG - chr7_3:48768526-48768545 None:intergenic 55.0%
CTGCTGTTACAGCAGTCAGC+AGG + chr7_3:48768524-48768543 Msa1107250:intron 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 48768089 48769601 48768089 ID=Msa1107250;Name=Msa1107250
chr7_3 mRNA 48768089 48769601 48768089 ID=Msa1107250-mRNA-1;Parent=Msa1107250;Name=Msa1107250-mRNA-1;_AED=0.06;_eAED=0.06;_QI=27|1|1|1|1|1|2|167|225
chr7_3 exon 48768089 48768436 48768089 ID=Msa1107250-mRNA-1:exon:9904;Parent=Msa1107250-mRNA-1
chr7_3 exon 48769078 48769601 48769078 ID=Msa1107250-mRNA-1:exon:9905;Parent=Msa1107250-mRNA-1
chr7_3 five_prime_UTR 48768089 48768115 48768089 ID=Msa1107250-mRNA-1:five_prime_utr;Parent=Msa1107250-mRNA-1
chr7_3 CDS 48768116 48768436 48768116 ID=Msa1107250-mRNA-1:cds;Parent=Msa1107250-mRNA-1
chr7_3 CDS 48769078 48769434 48769078 ID=Msa1107250-mRNA-1:cds;Parent=Msa1107250-mRNA-1
chr7_3 three_prime_UTR 48769435 48769601 48769435 ID=Msa1107250-mRNA-1:three_prime_utr;Parent=Msa1107250-mRNA-1
Gene Sequence

>Msa1107250

ATGGCATCAAATAAGGAAGAGGTGAAGCTTTTTGGAATGAAGGCAAGTCCATTTGTGTGCAGGGTGGAGATTGCTCTAAAACTGAAAGGAGTTGAATACAAATATGAGGTAGAAAAGTTTAAGAACTCGAGTGATACACTCATCAGTTACAATCCTGTTTATAAGAAAGTTCCTGTATTAGTTCATAATGATAAGCCTATATCAGAATCCCTTGTGATTCTTGAGTATATTGATGAGACTTGGAAACAAAATCCAATATTGCCTTCTGATCCTTGTAAAAGAGCCTTGGCACGTTTCTGGTCCAAGTTCATTGATGATAAATGGTTGGATGCTATAATAAAAGTTTCTTCCACTCTTGATGAGAAAGAGATTGAGAAGGGTATTGAGGAAACAGGAGTGGCTCTTCAATTTCTTGAGGATGAGCTCAAAGACAAGTTCTTTGGTGGAGAAGAGATTGGCCTTGTTGACATTACTGGAGTCTTCGTATCTTTTTGGCTCCCCATTGTAGAAGAAGTAATAGGACTGAAGTTGTTCACTAGTGAGAAATTTCCAAAGTTATTCAATTGGAGCCAAGACTTCAATAACCACCCAATTGTCAAGGAAAATTTGCCTCCTAGACTAGAAACCCTTTTGGCCTTCGAAAGATCTCGTTCTGAAAGTCTTGCTGCTTCAAAATAA

Protein sequence

>Msa1107250

MASNKEEVKLFGMKASPFVCRVEIALKLKGVEYKYEVEKFKNSSDTLISYNPVYKKVPVLVHNDKPISESLVILEYIDETWKQNPILPSDPCKRALARFWSKFIDDKWLDAIIKVSSTLDEKEIEKGIEETGVALQFLEDELKDKFFGGEEIGLVDITGVFVSFWLPIVEEVIGLKLFTSEKFPKLFNWSQDFNNHPIVKENLPPRLETLLAFERSRSESLAASK*