AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1150740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150740 MtrunA17_Chr7g0240521 94.667 225 12 0 1 225 8 232 2.05e-147 410
Msa1150740 MtrunA17_Chr7g0240561 78.222 225 48 1 1 225 1 224 1.74e-123 349
Msa1150740 MtrunA17_Chr7g0240511 78.667 225 42 2 1 225 1 219 1.44e-121 344
Msa1150740 MtrunA17_Chr7g0240551 76.000 225 53 1 1 225 1 224 2.66e-120 341
Msa1150740 MtrunA17_Chr7g0240581 75.111 225 55 1 1 225 1 224 6.96e-120 340
Msa1150740 MtrunA17_Chr7g0240541 74.222 225 57 1 1 225 1 224 1.55e-115 328
Msa1150740 MtrunA17_Chr7g0240531 74.222 225 57 1 1 225 1 224 3.65e-115 328
Msa1150740 MtrunA17_Chr7g0240631 67.257 226 72 2 1 225 1 225 7.56e-108 309
Msa1150740 MtrunA17_Chr7g0240641 66.372 226 74 2 1 225 1 225 2.59e-105 303
Msa1150740 MtrunA17_Chr7g0240681 65.487 226 76 2 1 225 1 225 1.29e-104 301
Msa1150740 MtrunA17_Chr4g0008791 60.268 224 88 1 1 224 1 223 3.97e-98 285
Msa1150740 MtrunA17_Chr7g0240611 63.839 224 76 2 1 224 1 219 2.91e-96 280
Msa1150740 MtrunA17_Chr7g0240691 58.636 220 89 2 6 224 36 254 8.23e-92 270
Msa1150740 MtrunA17_Chr4g0008781 58.447 219 89 2 2 219 3 220 2.15e-86 254
Msa1150740 MtrunA17_Chr7g0240671 62.312 199 71 1 8 206 5 199 2.85e-84 249
Msa1150740 MtrunA17_Chr7g0240651 61.435 223 81 2 1 223 1 218 5.39e-82 244
Msa1150740 MtrunA17_Chr7g0240661 63.107 206 72 1 1 206 1 202 2.64e-79 237
Msa1150740 MtrunA17_Chr1g0212301 45.872 218 115 2 7 221 3 220 2.05e-58 184
Msa1150740 MtrunA17_Chr1g0196771 45.701 221 114 4 6 223 2 219 2.91e-58 183
Msa1150740 MtrunA17_Chr3g0132581 47.511 221 113 3 5 224 3 221 3.67e-58 183
Msa1150740 MtrunA17_Chr6g0483141 45.495 222 117 3 7 225 3 223 9.56e-58 182
Msa1150740 MtrunA17_Chr8g0379581 45.116 215 116 2 4 217 2 215 4.41e-57 180
Msa1150740 MtrunA17_Chr8g0379561 46.847 222 106 4 4 219 3 218 2.73e-56 178
Msa1150740 MtrunA17_Chr1g0196691 43.694 222 119 4 7 224 28 247 2.65e-52 169
Msa1150740 MtrunA17_Chr1g0196711 44.340 212 111 5 7 214 3 211 7.42e-52 167
Msa1150740 MtrunA17_Chr5g0417011 41.553 219 119 4 1 212 1 217 1.70e-50 164
Msa1150740 MtrunA17_Chr1g0196661 44.000 225 115 7 7 225 3 222 4.71e-50 162
Msa1150740 MtrunA17_Chr4g0029341 43.318 217 112 6 6 216 3 214 2.58e-49 160
Msa1150740 MtrunA17_Chr8g0363751 43.439 221 114 6 5 216 3 221 4.59e-49 160
Msa1150740 MtrunA17_Chr1g0196721 42.342 222 119 7 8 224 3 220 6.21e-49 159
Msa1150740 MtrunA17_Chr5g0415411 44.131 213 107 5 1 204 1 210 1.10e-47 156
Msa1150740 MtrunA17_Chr2g0312791 40.952 210 120 3 6 213 3 210 5.45e-41 139
Msa1150740 MtrunA17_Chr3g0107731 45.026 191 100 5 16 204 18 205 1.74e-40 138
Msa1150740 MtrunA17_Chr2g0312731 40.291 206 108 7 6 204 3 200 6.02e-39 134
Msa1150740 MtrunA17_Chr3g0107741 41.872 203 113 5 4 204 6 205 1.98e-38 132
Msa1150740 MtrunA17_Chr4g0069471 45.810 179 91 5 3 177 21 197 2.11e-38 132
Msa1150740 MtrunA17_Chr2g0312771 39.303 201 117 4 6 204 3 200 2.80e-38 132
Msa1150740 MtrunA17_Chr2g0312751 39.303 201 117 4 6 204 3 200 3.63e-38 132
Msa1150740 MtrunA17_Chr8g0391631 47.742 155 73 4 7 153 21 175 6.31e-38 130
Msa1150740 MtrunA17_Chr2g0312721 40.741 189 105 5 6 191 3 187 8.67e-38 131
Msa1150740 MtrunA17_Chr2g0312781 37.379 206 124 4 1 204 15 217 2.12e-36 127
Msa1150740 MtrunA17_Chr8g0357241 38.350 206 122 4 6 209 3 205 2.94e-36 127
Msa1150740 MtrunA17_Chr8g0357211 40.957 188 106 4 6 191 3 187 9.77e-36 125
Msa1150740 MtrunA17_Chr2g0312811 40.196 204 113 6 6 204 3 202 1.94e-35 125
Msa1150740 MtrunA17_Chr2g0312681 38.614 202 119 4 7 206 4 202 1.25e-33 120
Msa1150740 MtrunA17_Chr5g0433801 38.049 205 120 5 3 204 2 202 2.91e-33 119
Msa1150740 MtrunA17_Chr2g0312691 37.561 205 123 4 7 209 4 205 3.50e-33 119
Msa1150740 MtrunA17_Chr2g0312711 35.577 208 112 5 7 204 4 199 1.07e-26 102
Msa1150740 MtrunA17_Chr2g0313561 48.276 58 29 1 51 107 2 59 1.80e-13 63.5
Msa1150740 MtrunA17_Chr4g0076681 29.204 226 130 9 1 204 1 218 6.51e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1150740 AT2G29420.1 50.455 220 106 3 3 221 5 222 5.32e-68 209
Msa1150740 AT3G09270.1 48.000 225 112 5 3 224 2 224 7.50e-64 198
Msa1150740 AT2G29490.1 50.000 208 101 3 1 206 1 207 3.24e-57 181
Msa1150740 AT2G29480.1 48.558 208 104 3 1 206 1 207 7.15e-56 177
Msa1150740 AT2G29450.1 46.847 222 112 3 3 218 2 223 7.25e-56 177
Msa1150740 AT2G29460.1 47.170 212 109 3 1 210 1 211 3.99e-55 176
Msa1150740 AT2G29470.1 46.190 210 107 5 1 206 1 208 2.03e-51 166
Msa1150740 AT1G10370.1 43.868 212 108 6 1 204 1 209 4.71e-50 163
Msa1150740 AT2G29440.1 45.673 208 109 4 1 206 1 206 5.46e-49 160
Msa1150740 AT1G69930.1 40.455 220 124 3 2 215 7 225 1.07e-48 160
Msa1150740 AT1G59700.1 45.455 231 112 8 5 223 4 232 2.39e-47 156
Msa1150740 AT1G59670.1 44.019 209 107 5 5 204 4 211 7.14e-46 152
Msa1150740 AT5G62480.1 42.534 221 113 5 8 215 9 228 3.57e-45 151
Msa1150740 AT1G10360.1 38.991 218 123 5 6 215 4 219 1.91e-44 149
Msa1150740 AT1G78370.1 43.455 191 103 4 16 204 13 200 1.03e-43 146
Msa1150740 AT1G69920.1 38.991 218 123 5 1 208 26 243 1.43e-43 147
Msa1150740 AT1G78380.1 43.500 200 108 4 7 204 4 200 3.53e-43 145
Msa1150740 AT1G27130.1 38.222 225 129 5 1 217 1 223 4.37e-43 145
Msa1150740 AT1G74590.1 38.528 231 133 5 1 224 1 229 8.78e-43 144
Msa1150740 AT1G78320.1 43.069 202 110 4 5 204 2 200 2.57e-41 140
Msa1150740 AT1G78340.1 44.253 174 94 3 6 177 3 175 4.91e-41 139
Msa1150740 AT1G53680.1 39.130 207 121 4 1 204 1 205 2.81e-37 130
Msa1150740 AT1G27140.1 35.681 213 127 4 1 204 1 212 2.20e-36 128
Msa1150740 AT1G17170.1 37.900 219 129 5 6 222 3 216 1.09e-35 125
Msa1150740 AT1G17180.1 38.806 201 118 4 6 204 3 200 3.50e-34 122
Msa1150740 AT1G17190.1 40.000 190 105 5 6 191 4 188 9.14e-34 121
Msa1150740 AT3G43800.1 37.441 211 123 6 4 208 2 209 6.57e-33 119
Msa1150740 AT1G78360.1 39.303 201 116 5 7 204 4 201 2.01e-32 117
Msa1150740 AT5G62480.2 34.091 220 107 5 8 215 9 202 1.69e-27 104
Msa1150740 AT5G62480.3 34.091 220 106 5 8 215 9 201 3.46e-27 103
Msa1150740 AT1G78320.2 35.323 201 100 4 5 204 2 173 8.79e-25 97.1
Msa1150740 AT2G02390.1 28.037 214 135 5 3 204 4 210 2.13e-13 67.4
Msa1150740 AT2G02390.3 26.754 228 127 6 3 204 4 217 2.76e-12 64.3
Msa1150740 AT2G02380.1 26.887 212 136 5 5 204 9 213 5.64e-12 63.5

Find 58 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAATAAATTAGTTTA+AGG 0.078938 7_4:-34537403 Msa1150740:exon
AAAGAGCCTTGGCACGTTTC+TGG 0.188650 7_4:-34538438 Msa1150740:CDS
GATATTTATTCGGGTGATTT+AGG 0.203997 7_4:-34537379 Msa1150740:three_prime_UTR
CAAGGATCAGAAGGCAATAT+TGG 0.248748 7_4:+34538463 None:intergenic
ATTGGCCTTGTTGACATTAC+TGG 0.269397 7_4:-34537617 Msa1150740:CDS
ACAGGAACTTTCTTATAAAC+AGG 0.283283 7_4:+34538562 None:intergenic
AATCTACTTGTTTCTCAGTT+TGG 0.305667 7_4:-34537346 Msa1150740:three_prime_UTR
AGTTTAAGGTGATATTTATT+CGG 0.309711 7_4:-34537389 Msa1150740:three_prime_UTR
GTTTAAGGTGATATTTATTC+GGG 0.339064 7_4:-34537388 Msa1150740:three_prime_UTR
GAGCTCAAAGACAAGTTCTT+TGG 0.355329 7_4:-34537650 Msa1150740:CDS
AGATAGCCGAAACAATTGTT+TGG 0.356539 7_4:-34538759 None:intergenic
CTCCACGATGGCATCAAATA+AGG 0.366405 7_4:-34538722 Msa1150740:exon
TGGCTCCAATTGAATAACTT+TGG 0.369360 7_4:+34537521 None:intergenic
GAGAAGGGTATTGAGGAAAC+AGG 0.385822 7_4:-34537698 Msa1150740:CDS
TACTTTATCATCTATGAACT+TGG 0.387024 7_4:+34538414 None:intergenic
ATTTACCCAAACAATTGTTT+CGG 0.389826 7_4:+34538753 None:intergenic
CCTATTACTTCTTCTACAAT+GGG 0.398317 7_4:+34537572 None:intergenic
TCCTATTACTTCTTCTACAA+TGG 0.401929 7_4:+34537571 None:intergenic
CCCATTGTAGAAGAAGTAAT+AGG 0.407102 7_4:-34537572 Msa1150740:CDS
GATAGCCGAAACAATTGTTT+GGG 0.411756 7_4:-34538758 Msa1150740:five_prime_UTR
AATTTCCAAAGTTATTCAAT+TGG 0.415545 7_4:-34537526 Msa1150740:CDS
TTGGGTGGTTATTGAAGTCT+TGG 0.422102 7_4:+34537501 None:intergenic
TCCTAGACTAGAAACCCTTT+TGG 0.422199 7_4:-34537459 Msa1150740:CDS
ATCTCCACCCTGCACACAAA+TGG 0.430527 7_4:+34538667 None:intergenic
ATCACAAGGGATTCTGATAT+AGG 0.433145 7_4:+34538520 None:intergenic
TTCTTTGGTGGAGACGAGAT+TGG 0.448516 7_4:-34537635 Msa1150740:CDS
GAGATCTTTCGAAGGCCAAA+AGG 0.460962 7_4:+34537444 None:intergenic
AGAGATTGAGAAGGGTATTG+AGG 0.468601 7_4:-34537705 Msa1150740:CDS
CTCAAAGACAAGTTCTTTGG+TGG 0.495298 7_4:-34537647 Msa1150740:CDS
TTGAGTATATTGATGAGACT+TGG 0.504629 7_4:-34538495 Msa1150740:CDS
AGGAGTTGAATACAAATATG+AGG 0.510242 7_4:-34538629 Msa1150740:CDS
TAACAAGAATAGTACAAAAG+AGG 0.512706 7_4:+34537260 None:intergenic
TGATCCTTGTAAAAGAGCCT+TGG 0.517207 7_4:-34538449 Msa1150740:CDS
TTATCATTATGAACTAATAC+AGG 0.517988 7_4:+34538544 None:intergenic
AGTGGCTCTTCAATTTCTTG+AGG 0.533010 7_4:-34537675 Msa1150740:CDS
GCCAAAAGGGTTTCTAGTCT+AGG 0.536473 7_4:+34537458 None:intergenic
GATGAGAAAGAGATTGAGAA+GGG 0.537394 7_4:-34537713 Msa1150740:CDS
AGATCTTTCGAAGGCCAAAA+GGG 0.542519 7_4:+34537445 None:intergenic
AGGCAAGTCCATTTGTGTGC+AGG 0.542935 7_4:-34538675 Msa1150740:CDS
CAGGAACTTTCTTATAAACA+GGG 0.564477 7_4:+34538563 None:intergenic
GGCAAGTCCATTTGTGTGCA+GGG 0.572089 7_4:-34538674 Msa1150740:CDS
TGATGAGAAAGAGATTGAGA+AGG 0.573160 7_4:-34537714 Msa1150740:CDS
GAGATTGCTCTAAAACTGAA+AGG 0.585304 7_4:-34538649 Msa1150740:CDS
AATCTCTTTCTCATCAAGAG+TGG 0.590956 7_4:+34537721 None:intergenic
GATGGCATCAAATAAGGAAG+AGG 0.597653 7_4:-34538716 Msa1150740:CDS
CAATATACTCAAGAATCACA+AGG 0.601780 7_4:+34538506 None:intergenic
CAATAACCACCCAATTGTCA+AGG 0.611678 7_4:-34537492 Msa1150740:CDS
TTCCTTATTTGATGCCATCG+TGG 0.614414 7_4:+34538720 None:intergenic
TTCAGAACGAGATCTTTCGA+AGG 0.621786 7_4:+34537436 None:intergenic
AAAAGGGTTTCTAGTCTAGG+AGG 0.639156 7_4:+34537461 None:intergenic
GGGTATTGAGGAAACAGGAG+TGG 0.669933 7_4:-34537693 Msa1150740:CDS
AATATACTCAAGAATCACAA+GGG 0.678725 7_4:+34538507 None:intergenic
CTTGGACCAGAAACGTGCCA+AGG 0.686787 7_4:+34538432 None:intergenic
TACAAAAGAGGATAAACACA+AGG 0.694346 7_4:+34537272 None:intergenic
AGACTCCAGTAATGTCAACA+AGG 0.694962 7_4:+34537612 None:intergenic
AAATAAGTGAAGCTCCACGA+TGG 0.713215 7_4:-34538734 Msa1150740:exon
CTATTACTTCTTCTACAATG+GGG 0.725460 7_4:+34537573 None:intergenic
AAGTCCATTTGTGTGCAGGG+TGG 0.735254 7_4:-34538671 Msa1150740:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTTAACCAAAAAAATTA+TGG + chr7_4:34537887-34537906 None:intergenic 10.0%
!! AAGGATTAAAATATATTTAA+GGG + chr7_4:34537919-34537938 None:intergenic 10.0%
!! TTATTTAACCAAAAAAATTA+TGG + chr7_4:34537887-34537906 None:intergenic 10.0%
!! AAGGATTAAAATATATTTAA+GGG + chr7_4:34537919-34537938 None:intergenic 10.0%
!! GAAGGATTAAAATATATTTA+AGG + chr7_4:34537920-34537939 None:intergenic 15.0%
!!! ATGAATGAAAAATTTTAGAA+GGG + chr7_4:34537966-34537985 None:intergenic 15.0%
!!! AATTTTTCATTCATGAAATT+AGG - chr7_4:34537972-34537991 Msa1150740:intron 15.0%
!! AATAAAACATTGGTATATTT+AGG - chr7_4:34538104-34538123 Msa1150740:intron 15.0%
!!! CCTCTAAAAAAATAAAAATA+GGG + chr7_4:34538150-34538169 None:intergenic 15.0%
!!! TCCTCTAAAAAAATAAAAAT+AGG + chr7_4:34538151-34538170 None:intergenic 15.0%
!!! CTTCAAAATAAATTAGTTTA+AGG - chr7_4:34538600-34538619 Msa1150740:CDS 15.0%
!! GAAGGATTAAAATATATTTA+AGG + chr7_4:34537920-34537939 None:intergenic 15.0%
!!! ATGAATGAAAAATTTTAGAA+GGG + chr7_4:34537966-34537985 None:intergenic 15.0%
!!! AATTTTTCATTCATGAAATT+AGG - chr7_4:34537972-34537991 Msa1150740:intron 15.0%
!! AATAAAACATTGGTATATTT+AGG - chr7_4:34538104-34538123 Msa1150740:intron 15.0%
!!! CCTCTAAAAAAATAAAAATA+GGG + chr7_4:34538150-34538169 None:intergenic 15.0%
!!! TCCTCTAAAAAAATAAAAAT+AGG + chr7_4:34538151-34538170 None:intergenic 15.0%
!!! CTTCAAAATAAATTAGTTTA+AGG - chr7_4:34538600-34538619 Msa1150740:CDS 15.0%
!! TTATCATTATGAACTAATAC+AGG + chr7_4:34537462-34537481 None:intergenic 20.0%
!!! TTGTTTTAACTAAAAACACA+CGG - chr7_4:34537770-34537789 Msa1150740:intron 20.0%
!!! AGTCTAAGAAATATTTTAGA+AGG + chr7_4:34537938-34537957 None:intergenic 20.0%
!! TAAAATATTTCTTAGACTTC+TGG - chr7_4:34537940-34537959 Msa1150740:intron 20.0%
!!! CATGAATGAAAAATTTTAGA+AGG + chr7_4:34537967-34537986 None:intergenic 20.0%
!! AATAGGGTTAAATAAGTAAA+TGG + chr7_4:34538134-34538153 None:intergenic 20.0%
!!! CCCTATTTTTATTTTTTTAG+AGG - chr7_4:34538147-34538166 Msa1150740:intron 20.0%
!! AATTTCCAAAGTTATTCAAT+TGG - chr7_4:34538477-34538496 Msa1150740:CDS 20.0%
!!! AGTTTAAGGTGATATTTATT+CGG - chr7_4:34538614-34538633 Msa1150740:CDS 20.0%
!! TTATCATTATGAACTAATAC+AGG + chr7_4:34537462-34537481 None:intergenic 20.0%
!!! TTGTTTTAACTAAAAACACA+CGG - chr7_4:34537770-34537789 Msa1150740:intron 20.0%
!!! AGTCTAAGAAATATTTTAGA+AGG + chr7_4:34537938-34537957 None:intergenic 20.0%
!! TAAAATATTTCTTAGACTTC+TGG - chr7_4:34537940-34537959 Msa1150740:intron 20.0%
!!! CATGAATGAAAAATTTTAGA+AGG + chr7_4:34537967-34537986 None:intergenic 20.0%
!! AATAGGGTTAAATAAGTAAA+TGG + chr7_4:34538134-34538153 None:intergenic 20.0%
!!! CCCTATTTTTATTTTTTTAG+AGG - chr7_4:34538147-34538166 Msa1150740:intron 20.0%
!! AATTTCCAAAGTTATTCAAT+TGG - chr7_4:34538477-34538496 Msa1150740:CDS 20.0%
!!! AGTTTAAGGTGATATTTATT+CGG - chr7_4:34538614-34538633 Msa1150740:CDS 20.0%
! ATTTACCCAAACAATTGTTT+CGG + chr7_4:34537253-34537272 None:intergenic 25.0%
! AATATACTCAAGAATCACAA+GGG + chr7_4:34537499-34537518 None:intergenic 25.0%
! TACTTTATCATCTATGAACT+TGG + chr7_4:34537592-34537611 None:intergenic 25.0%
!!! AGCCTAAGAAATATTTTAGA+AGG - chr7_4:34538076-34538095 Msa1150740:intron 25.0%
!!! GTCCTTCTAAAATATTTCTT+AGG + chr7_4:34538081-34538100 None:intergenic 25.0%
! GAAGGACTAAAATAAAACAT+TGG - chr7_4:34538094-34538113 Msa1150740:intron 25.0%
!! GTTTAAGGTGATATTTATTC+GGG - chr7_4:34538615-34538634 Msa1150740:CDS 25.0%
! TAACAAGAATAGTACAAAAG+AGG + chr7_4:34538746-34538765 None:intergenic 25.0%
! ATTTACCCAAACAATTGTTT+CGG + chr7_4:34537253-34537272 None:intergenic 25.0%
! AATATACTCAAGAATCACAA+GGG + chr7_4:34537499-34537518 None:intergenic 25.0%
! TACTTTATCATCTATGAACT+TGG + chr7_4:34537592-34537611 None:intergenic 25.0%
!!! AGCCTAAGAAATATTTTAGA+AGG - chr7_4:34538076-34538095 Msa1150740:intron 25.0%
!!! GTCCTTCTAAAATATTTCTT+AGG + chr7_4:34538081-34538100 None:intergenic 25.0%
! GAAGGACTAAAATAAAACAT+TGG - chr7_4:34538094-34538113 Msa1150740:intron 25.0%
!! GTTTAAGGTGATATTTATTC+GGG - chr7_4:34538615-34538634 Msa1150740:CDS 25.0%
! TAACAAGAATAGTACAAAAG+AGG + chr7_4:34538746-34538765 None:intergenic 25.0%
AGGAGTTGAATACAAATATG+AGG - chr7_4:34537374-34537393 Msa1150740:three_prime_UTR 30.0%
CAGGAACTTTCTTATAAACA+GGG + chr7_4:34537443-34537462 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG + chr7_4:34537444-34537463 None:intergenic 30.0%
CAATATACTCAAGAATCACA+AGG + chr7_4:34537500-34537519 None:intergenic 30.0%
TTGAGTATATTGATGAGACT+TGG - chr7_4:34537508-34537527 Msa1150740:CDS 30.0%
GATGTTCATCTCAAATCAAA+TGG + chr7_4:34537809-34537828 None:intergenic 30.0%
! AATTTTACAGCACTAAAACC+TGG - chr7_4:34537860-34537879 Msa1150740:intron 30.0%
!!! AACCTGGTCCATAATTTTTT+TGG - chr7_4:34537876-34537895 Msa1150740:intron 30.0%
AACCAAAAAAATTATGGACC+AGG + chr7_4:34537881-34537900 None:intergenic 30.0%
!!! CACTATTTTTTTAACAGCAG+AGG - chr7_4:34538017-34538036 Msa1150740:intron 30.0%
!!! TCATGGACGAAATTTTTTTG+AGG - chr7_4:34538046-34538065 Msa1150740:intron 30.0%
!!! CATGGACGAAATTTTTTTGA+GGG - chr7_4:34538047-34538066 Msa1150740:intron 30.0%
CTATTACTTCTTCTACAATG+GGG + chr7_4:34538433-34538452 None:intergenic 30.0%
CCTATTACTTCTTCTACAAT+GGG + chr7_4:34538434-34538453 None:intergenic 30.0%
TCCTATTACTTCTTCTACAA+TGG + chr7_4:34538435-34538454 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG + chr7_4:34538523-34538542 None:intergenic 30.0%
GATATTTATTCGGGTGATTT+AGG - chr7_4:34538624-34538643 Msa1150740:CDS 30.0%
! AATCTACTTGTTTCTCAGTT+TGG - chr7_4:34538657-34538676 Msa1150740:CDS 30.0%
TACAAAAGAGGATAAACACA+AGG + chr7_4:34538734-34538753 None:intergenic 30.0%
AGGAGTTGAATACAAATATG+AGG - chr7_4:34537374-34537393 Msa1150740:three_prime_UTR 30.0%
CAGGAACTTTCTTATAAACA+GGG + chr7_4:34537443-34537462 None:intergenic 30.0%
ACAGGAACTTTCTTATAAAC+AGG + chr7_4:34537444-34537463 None:intergenic 30.0%
CAATATACTCAAGAATCACA+AGG + chr7_4:34537500-34537519 None:intergenic 30.0%
TTGAGTATATTGATGAGACT+TGG - chr7_4:34537508-34537527 Msa1150740:CDS 30.0%
GATGTTCATCTCAAATCAAA+TGG + chr7_4:34537809-34537828 None:intergenic 30.0%
! AATTTTACAGCACTAAAACC+TGG - chr7_4:34537860-34537879 Msa1150740:intron 30.0%
!!! AACCTGGTCCATAATTTTTT+TGG - chr7_4:34537876-34537895 Msa1150740:intron 30.0%
AACCAAAAAAATTATGGACC+AGG + chr7_4:34537881-34537900 None:intergenic 30.0%
!!! CACTATTTTTTTAACAGCAG+AGG - chr7_4:34538017-34538036 Msa1150740:intron 30.0%
!!! TCATGGACGAAATTTTTTTG+AGG - chr7_4:34538046-34538065 Msa1150740:intron 30.0%
!!! CATGGACGAAATTTTTTTGA+GGG - chr7_4:34538047-34538066 Msa1150740:intron 30.0%
CTATTACTTCTTCTACAATG+GGG + chr7_4:34538433-34538452 None:intergenic 30.0%
CCTATTACTTCTTCTACAAT+GGG + chr7_4:34538434-34538453 None:intergenic 30.0%
TCCTATTACTTCTTCTACAA+TGG + chr7_4:34538435-34538454 None:intergenic 30.0%
! GCAAATTTTCCTTGACAATT+GGG + chr7_4:34538523-34538542 None:intergenic 30.0%
GATATTTATTCGGGTGATTT+AGG - chr7_4:34538624-34538643 Msa1150740:CDS 30.0%
! AATCTACTTGTTTCTCAGTT+TGG - chr7_4:34538657-34538676 Msa1150740:CDS 30.0%
TACAAAAGAGGATAAACACA+AGG + chr7_4:34538734-34538753 None:intergenic 30.0%
!! GAGATTGCTCTAAAACTGAA+AGG - chr7_4:34537354-34537373 Msa1150740:three_prime_UTR 35.0%
ATCACAAGGGATTCTGATAT+AGG + chr7_4:34537486-34537505 None:intergenic 35.0%
! TCACACACACACACAATTTT+TGG - chr7_4:34537675-34537694 Msa1150740:CDS 35.0%
!!! ACACACACAATTTTTGGAAC+AGG - chr7_4:34537681-34537700 Msa1150740:CDS 35.0%
ACCTTTCAATTGTGATCAGA+CGG + chr7_4:34537745-34537764 None:intergenic 35.0%
!! ACCTTAATTTGTGAGACTAG+TGG - chr7_4:34538234-34538253 Msa1150740:intron 35.0%
! ACCACTAGTCTCACAAATTA+AGG + chr7_4:34538238-34538257 None:intergenic 35.0%
! TAATTTGTGAGACTAGTGGT+TGG - chr7_4:34538238-34538257 Msa1150740:intron 35.0%
AATCTCTTTCTCATCAAGAG+TGG + chr7_4:34538285-34538304 None:intergenic 35.0%
TGATGAGAAAGAGATTGAGA+AGG - chr7_4:34538289-34538308 Msa1150740:intron 35.0%
GATGAGAAAGAGATTGAGAA+GGG - chr7_4:34538290-34538309 Msa1150740:intron 35.0%
CCCATTGTAGAAGAAGTAAT+AGG - chr7_4:34538431-34538450 Msa1150740:CDS 35.0%
TGGCTCCAATTGAATAACTT+TGG + chr7_4:34538485-34538504 None:intergenic 35.0%
! AATTTTCCTTGACAATTGGG+TGG + chr7_4:34538520-34538539 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG + chr7_4:34538524-34538543 None:intergenic 35.0%
!! GAGATTGCTCTAAAACTGAA+AGG - chr7_4:34537354-34537373 Msa1150740:three_prime_UTR 35.0%
ATCACAAGGGATTCTGATAT+AGG + chr7_4:34537486-34537505 None:intergenic 35.0%
! TCACACACACACACAATTTT+TGG - chr7_4:34537675-34537694 Msa1150740:CDS 35.0%
!!! ACACACACAATTTTTGGAAC+AGG - chr7_4:34537681-34537700 Msa1150740:CDS 35.0%
ACCTTTCAATTGTGATCAGA+CGG + chr7_4:34537745-34537764 None:intergenic 35.0%
!! ACCTTAATTTGTGAGACTAG+TGG - chr7_4:34538234-34538253 Msa1150740:intron 35.0%
! ACCACTAGTCTCACAAATTA+AGG + chr7_4:34538238-34538257 None:intergenic 35.0%
! TAATTTGTGAGACTAGTGGT+TGG - chr7_4:34538238-34538257 Msa1150740:intron 35.0%
AATCTCTTTCTCATCAAGAG+TGG + chr7_4:34538285-34538304 None:intergenic 35.0%
TGATGAGAAAGAGATTGAGA+AGG - chr7_4:34538289-34538308 Msa1150740:intron 35.0%
GATGAGAAAGAGATTGAGAA+GGG - chr7_4:34538290-34538309 Msa1150740:intron 35.0%
CCCATTGTAGAAGAAGTAAT+AGG - chr7_4:34538431-34538450 Msa1150740:CDS 35.0%
TGGCTCCAATTGAATAACTT+TGG + chr7_4:34538485-34538504 None:intergenic 35.0%
! AATTTTCCTTGACAATTGGG+TGG + chr7_4:34538520-34538539 None:intergenic 35.0%
! GGCAAATTTTCCTTGACAAT+TGG + chr7_4:34538524-34538543 None:intergenic 35.0%
AAATAAGTGAAGCTCCACGA+TGG - chr7_4:34537269-34537288 Msa1150740:three_prime_UTR 40.0%
! TTCCTTATTTGATGCCATCG+TGG + chr7_4:34537286-34537305 None:intergenic 40.0%
GATGGCATCAAATAAGGAAG+AGG - chr7_4:34537287-34537306 Msa1150740:three_prime_UTR 40.0%
! AAGGAAGAGGTGAAGCTTTT+TGG - chr7_4:34537300-34537319 Msa1150740:three_prime_UTR 40.0%
!!! GGTGAAGCTTTTTGGAATGA+AGG - chr7_4:34537308-34537327 Msa1150740:three_prime_UTR 40.0%
CAAGGATCAGAAGGCAATAT+TGG + chr7_4:34537543-34537562 None:intergenic 40.0%
! GCTCTTTTACAAGGATCAGA+AGG + chr7_4:34537552-34537571 None:intergenic 40.0%
TGATCCTTGTAAAAGAGCCT+TGG - chr7_4:34537554-34537573 Msa1150740:CDS 40.0%
ATTGTGTGTGTGTGTGAAGT+TGG + chr7_4:34537672-34537691 None:intergenic 40.0%
AATTAGCACACAGTTTCACG+CGG + chr7_4:34537844-34537863 None:intergenic 40.0%
AACAGCAGAGGCTAATTTCA+TGG - chr7_4:34538029-34538048 Msa1150740:intron 40.0%
!! AGAGATTGAGAAGGGTATTG+AGG - chr7_4:34538298-34538317 Msa1150740:intron 40.0%
AGTGGCTCTTCAATTTCTTG+AGG - chr7_4:34538328-34538347 Msa1150740:intron 40.0%
GAGCTCAAAGACAAGTTCTT+TGG - chr7_4:34538353-34538372 Msa1150740:intron 40.0%
CTCAAAGACAAGTTCTTTGG+TGG - chr7_4:34538356-34538375 Msa1150740:intron 40.0%
!! ATTGGCCTTGTTGACATTAC+TGG - chr7_4:34538386-34538405 Msa1150740:intron 40.0%
AGACTCCAGTAATGTCAACA+AGG + chr7_4:34538394-34538413 None:intergenic 40.0%
! CTGGAGTCTTCGTATCTTTT+TGG - chr7_4:34538405-34538424 Msa1150740:intron 40.0%
TTGGGTGGTTATTGAAGTCT+TGG + chr7_4:34538505-34538524 None:intergenic 40.0%
CAATAACCACCCAATTGTCA+AGG - chr7_4:34538511-34538530 Msa1150740:CDS 40.0%
!! AAAAGGGTTTCTAGTCTAGG+AGG + chr7_4:34538545-34538564 None:intergenic 40.0%
! TCCTAGACTAGAAACCCTTT+TGG - chr7_4:34538544-34538563 Msa1150740:CDS 40.0%
AGATCTTTCGAAGGCCAAAA+GGG + chr7_4:34538561-34538580 None:intergenic 40.0%
TTCAGAACGAGATCTTTCGA+AGG + chr7_4:34538570-34538589 None:intergenic 40.0%
AAATAAGTGAAGCTCCACGA+TGG - chr7_4:34537269-34537288 Msa1150740:three_prime_UTR 40.0%
! TTCCTTATTTGATGCCATCG+TGG + chr7_4:34537286-34537305 None:intergenic 40.0%
GATGGCATCAAATAAGGAAG+AGG - chr7_4:34537287-34537306 Msa1150740:three_prime_UTR 40.0%
! AAGGAAGAGGTGAAGCTTTT+TGG - chr7_4:34537300-34537319 Msa1150740:three_prime_UTR 40.0%
!!! GGTGAAGCTTTTTGGAATGA+AGG - chr7_4:34537308-34537327 Msa1150740:three_prime_UTR 40.0%
CAAGGATCAGAAGGCAATAT+TGG + chr7_4:34537543-34537562 None:intergenic 40.0%
! GCTCTTTTACAAGGATCAGA+AGG + chr7_4:34537552-34537571 None:intergenic 40.0%
TGATCCTTGTAAAAGAGCCT+TGG - chr7_4:34537554-34537573 Msa1150740:CDS 40.0%
ATTGTGTGTGTGTGTGAAGT+TGG + chr7_4:34537672-34537691 None:intergenic 40.0%
AATTAGCACACAGTTTCACG+CGG + chr7_4:34537844-34537863 None:intergenic 40.0%
AACAGCAGAGGCTAATTTCA+TGG - chr7_4:34538029-34538048 Msa1150740:intron 40.0%
!! AGAGATTGAGAAGGGTATTG+AGG - chr7_4:34538298-34538317 Msa1150740:intron 40.0%
AGTGGCTCTTCAATTTCTTG+AGG - chr7_4:34538328-34538347 Msa1150740:intron 40.0%
GAGCTCAAAGACAAGTTCTT+TGG - chr7_4:34538353-34538372 Msa1150740:intron 40.0%
CTCAAAGACAAGTTCTTTGG+TGG - chr7_4:34538356-34538375 Msa1150740:intron 40.0%
!! ATTGGCCTTGTTGACATTAC+TGG - chr7_4:34538386-34538405 Msa1150740:intron 40.0%
AGACTCCAGTAATGTCAACA+AGG + chr7_4:34538394-34538413 None:intergenic 40.0%
! CTGGAGTCTTCGTATCTTTT+TGG - chr7_4:34538405-34538424 Msa1150740:intron 40.0%
TTGGGTGGTTATTGAAGTCT+TGG + chr7_4:34538505-34538524 None:intergenic 40.0%
CAATAACCACCCAATTGTCA+AGG - chr7_4:34538511-34538530 Msa1150740:CDS 40.0%
!! AAAAGGGTTTCTAGTCTAGG+AGG + chr7_4:34538545-34538564 None:intergenic 40.0%
! TCCTAGACTAGAAACCCTTT+TGG - chr7_4:34538544-34538563 Msa1150740:CDS 40.0%
AGATCTTTCGAAGGCCAAAA+GGG + chr7_4:34538561-34538580 None:intergenic 40.0%
TTCAGAACGAGATCTTTCGA+AGG + chr7_4:34538570-34538589 None:intergenic 40.0%
CTCCACGATGGCATCAAATA+AGG - chr7_4:34537281-34537300 Msa1150740:three_prime_UTR 45.0%
GCCGTCTGATCACAATTGAA+AGG - chr7_4:34537741-34537760 Msa1150740:CDS 45.0%
!! GAGAAGGGTATTGAGGAAAC+AGG - chr7_4:34538305-34538324 Msa1150740:intron 45.0%
TTCTTTGGTGGAGACGAGAT+TGG - chr7_4:34538368-34538387 Msa1150740:intron 45.0%
!! GCCAAAAGGGTTTCTAGTCT+AGG + chr7_4:34538548-34538567 None:intergenic 45.0%
GAGATCTTTCGAAGGCCAAA+AGG + chr7_4:34538562-34538581 None:intergenic 45.0%
CTCCACGATGGCATCAAATA+AGG - chr7_4:34537281-34537300 Msa1150740:three_prime_UTR 45.0%
GCCGTCTGATCACAATTGAA+AGG - chr7_4:34537741-34537760 Msa1150740:CDS 45.0%
!! GAGAAGGGTATTGAGGAAAC+AGG - chr7_4:34538305-34538324 Msa1150740:intron 45.0%
TTCTTTGGTGGAGACGAGAT+TGG - chr7_4:34538368-34538387 Msa1150740:intron 45.0%
!! GCCAAAAGGGTTTCTAGTCT+AGG + chr7_4:34538548-34538567 None:intergenic 45.0%
GAGATCTTTCGAAGGCCAAA+AGG + chr7_4:34538562-34538581 None:intergenic 45.0%
AGGCAAGTCCATTTGTGTGC+AGG - chr7_4:34537328-34537347 Msa1150740:three_prime_UTR 50.0%
GGCAAGTCCATTTGTGTGCA+GGG - chr7_4:34537329-34537348 Msa1150740:three_prime_UTR 50.0%
AAGTCCATTTGTGTGCAGGG+TGG - chr7_4:34537332-34537351 Msa1150740:three_prime_UTR 50.0%
ATCTCCACCCTGCACACAAA+TGG + chr7_4:34537339-34537358 None:intergenic 50.0%
! CGTGCCAAGGCTCTTTTACA+AGG + chr7_4:34537561-34537580 None:intergenic 50.0%
AAAGAGCCTTGGCACGTTTC+TGG - chr7_4:34537565-34537584 Msa1150740:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr7_4:34537617-34537636 None:intergenic 50.0%
AGGATTCCTGCTGTTACAGC+AGG - chr7_4:34537701-34537720 Msa1150740:CDS 50.0%
!! GGGTATTGAGGAAACAGGAG+TGG - chr7_4:34538310-34538329 Msa1150740:intron 50.0%
AGGCAAGTCCATTTGTGTGC+AGG - chr7_4:34537328-34537347 Msa1150740:three_prime_UTR 50.0%
GGCAAGTCCATTTGTGTGCA+GGG - chr7_4:34537329-34537348 Msa1150740:three_prime_UTR 50.0%
AAGTCCATTTGTGTGCAGGG+TGG - chr7_4:34537332-34537351 Msa1150740:three_prime_UTR 50.0%
ATCTCCACCCTGCACACAAA+TGG + chr7_4:34537339-34537358 None:intergenic 50.0%
! CGTGCCAAGGCTCTTTTACA+AGG + chr7_4:34537561-34537580 None:intergenic 50.0%
AAAGAGCCTTGGCACGTTTC+TGG - chr7_4:34537565-34537584 Msa1150740:CDS 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG + chr7_4:34537617-34537636 None:intergenic 50.0%
AGGATTCCTGCTGTTACAGC+AGG - chr7_4:34537701-34537720 Msa1150740:CDS 50.0%
!! GGGTATTGAGGAAACAGGAG+TGG - chr7_4:34538310-34538329 Msa1150740:intron 50.0%
CTTGGACCAGAAACGTGCCA+AGG + chr7_4:34537574-34537593 None:intergenic 55.0%
ACAGCACCTGCTGTAACAGC+AGG + chr7_4:34537710-34537729 None:intergenic 55.0%
CTTGGACCAGAAACGTGCCA+AGG + chr7_4:34537574-34537593 None:intergenic 55.0%
ACAGCACCTGCTGTAACAGC+AGG + chr7_4:34537710-34537729 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 34537248 34538777 34537248 ID=Msa1150740;Name=Msa1150740
chr7_4 mRNA 34537248 34538777 34537248 ID=Msa1150740-mRNA-1;Parent=Msa1150740;Name=Msa1150740-mRNA-1;_AED=0.02;_eAED=0.02;_QI=40|1|1|1|1|1|2|167|225
chr7_4 exon 34537248 34537771 34537248 ID=Msa1150740-mRNA-1:exon:8201;Parent=Msa1150740-mRNA-1
chr7_4 exon 34538417 34538777 34538417 ID=Msa1150740-mRNA-1:exon:8200;Parent=Msa1150740-mRNA-1
chr7_4 five_prime_UTR 34538738 34538777 34538738 ID=Msa1150740-mRNA-1:five_prime_utr;Parent=Msa1150740-mRNA-1
chr7_4 CDS 34538417 34538737 34538417 ID=Msa1150740-mRNA-1:cds;Parent=Msa1150740-mRNA-1
chr7_4 CDS 34537415 34537771 34537415 ID=Msa1150740-mRNA-1:cds;Parent=Msa1150740-mRNA-1
chr7_4 three_prime_UTR 34537248 34537414 34537248 ID=Msa1150740-mRNA-1:three_prime_utr;Parent=Msa1150740-mRNA-1
Gene Sequence

>Msa1150740

ATGGCATCAAATAAGGAAGAGGTGAAGCTTTTTGGAATGAAGGCAAGTCCATTTGTGTGCAGGGTGGAGATTGCTCTAAAACTGAAAGGAGTTGAATACAAATATGAGGTAGAAAAGTTTAAGAACTTGAGTGATACACTCATCAATTACAACCCTGTTTATAAGAAAGTTCCTGTATTAGTTCATAATGATAAGCCTATATCAGAATCCCTTGTGATTCTTGAGTATATTGATGAGACTTGGAAACAAAATCCAATATTGCCTTCTGATCCTTGTAAAAGAGCCTTGGCACGTTTCTGGTCCAAGTTCATAGATGATAAATGGTTGGATGCTGTAATAAAAGTTTCTTCCACTCTTGATGAGAAAGAGATTGAGAAGGGTATTGAGGAAACAGGAGTGGCTCTTCAATTTCTTGAGGATGAGCTCAAAGACAAGTTCTTTGGTGGAGACGAGATTGGCCTTGTTGACATTACTGGAGTCTTCGTATCTTTTTGGCTCCCCATTGTAGAAGAAGTAATAGGACTGAAGTTGTTCACTAGTGAGAAATTTCCAAAGTTATTCAATTGGAGCCAAGACTTCAATAACCACCCAATTGTCAAGGAAAATTTGCCTCCTAGACTAGAAACCCTTTTGGCCTTCGAAAGATCTCGTTCTGAAAGTCTTGCTGCTTCAAAATAA

Protein sequence

>Msa1150740

MASNKEEVKLFGMKASPFVCRVEIALKLKGVEYKYEVEKFKNLSDTLINYNPVYKKVPVLVHNDKPISESLVILEYIDETWKQNPILPSDPCKRALARFWSKFIDDKWLDAVIKVSSTLDEKEIEKGIEETGVALQFLEDELKDKFFGGDEIGLVDITGVFVSFWLPIVEEVIGLKLFTSEKFPKLFNWSQDFNNHPIVKENLPPRLETLLAFERSRSESLAASK*