AlfalfaGEDB | Msa1061970

M. sativa cultivar zhongmu-4 / Msa1061970

KEGG: K00799
GO: GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0046686 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700
PFAM: PF02798.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1061970	XP_003623208.1	96.000	225	9	0	1	225	1	225	3.41e-155	439

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1061970	sp\|P32110\|GSTX6_SOYBN	77.434	226	49	2	1	225	1	225	5.90e-125	355

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1061970	G7L6I2	96.000	225	9	0	1	225	1	225	1.63e-155	439

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000820	Msa1061970	0.815938	7.153586e-52	-8.615850e-47
Msa0037760	Msa1061970	0.810067	1.385929e-50	-8.615850e-47
Msa0051480	Msa1061970	0.833764	4.422382e-56	-8.615850e-47
Msa0052780	Msa1061970	0.819584	1.075436e-52	-8.615850e-47
Msa0097570	Msa1061970	0.816631	5.005134e-52	-8.615850e-47
Msa0129640	Msa1061970	0.816750	4.706594e-52	-8.615850e-47
Msa0143640	Msa1061970	0.819013	1.451432e-52	-8.615850e-47
Msa0145430	Msa1061970	0.821621	3.663455e-53	-8.615850e-47
Msa0146200	Msa1061970	0.832911	7.212587e-56	-8.615850e-47
Msa0150620	Msa1061970	0.821872	3.203875e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1061970	MtrunA17_Chr7g0240681	96.000	225	9	0	1	225	1	225	3.14e-159	439
Msa1061970	MtrunA17_Chr7g0240631	78.125	224	48	1	1	224	1	223	2.78e-129	363
Msa1061970	MtrunA17_Chr7g0240641	77.232	224	50	1	1	224	1	223	1.30e-127	359
Msa1061970	MtrunA17_Chr7g0240691	74.429	219	56	0	6	224	36	254	1.62e-120	342
Msa1061970	MtrunA17_Chr7g0240581	69.333	225	68	1	1	225	1	224	3.93e-113	323
Msa1061970	MtrunA17_Chr7g0240561	67.111	225	73	1	1	225	1	224	3.90e-111	318
Msa1061970	MtrunA17_Chr7g0240551	69.778	225	67	1	1	225	1	224	5.79e-111	317
Msa1061970	MtrunA17_Chr7g0240531	67.556	225	72	1	1	225	1	224	1.67e-105	303
Msa1061970	MtrunA17_Chr4g0008791	65.179	224	77	1	1	224	1	223	3.50e-104	300
Msa1061970	MtrunA17_Chr7g0240611	68.304	224	66	2	1	224	1	219	7.41e-104	299

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1061970	AT3G09270.1	50.667	225	105	5	4	224	2	224	1.05e-75	228
Msa1061970	AT2G29420.1	49.545	220	108	2	3	221	5	222	2.41e-74	225
Msa1061970	AT2G29490.1	48.095	210	105	3	1	208	1	208	4.47e-60	188
Msa1061970	AT2G29480.1	45.714	210	110	3	1	208	1	208	4.58e-56	178
Msa1061970	AT2G29460.1	43.049	223	123	3	1	221	1	221	7.73e-55	175
Msa1061970	AT1G10370.1	45.192	208	106	3	5	205	3	209	2.20e-54	174
Msa1061970	AT2G29450.1	47.115	208	107	3	3	208	2	208	2.61e-54	174
Msa1061970	AT2G29440.1	46.190	210	108	4	1	208	1	207	2.42e-53	171
Msa1061970	AT2G29470.1	43.602	211	114	4	1	208	1	209	4.97e-53	171
Msa1061970	AT1G59700.1	46.890	209	102	5	5	205	4	211	3.92e-52	168

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Find 38 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTAGCCAAGGCTCTT+TGG	0.322049	7_2:-52462907	None:intergenic
AAAGAGCCTTGGCTAGATTT+TGG	0.274128	7_2:+52462909	Msa1061970:CDS
AATCACAAGTGATTCTGATA+TGG	0.275550	7_2:-52462828	None:intergenic
ACAGATTGCTCTAAAGTTGA+AGG	0.449931	7_2:+52462697	Msa1061970:CDS
AGGAGAGGAGATTGGAATTG+TGG	0.454908	7_2:+52463359	Msa1061970:CDS
AGTGTCCCAAACTTTCCAAG+TGG	0.647650	7_2:+52463460	Msa1061970:CDS
ATCACAAGTGATTCTGATAT+GGG	0.450253	7_2:-52462827	None:intergenic
ATCTGTACTCTACACACAAA+TGG	0.424561	7_2:-52462680	None:intergenic
CAAATTTCTTGAAGAAAACA+TGG	0.532285	7_2:+52462730	Msa1061970:CDS
CAGATTGCTCTAAAGTTGAA+GGG	0.593796	7_2:+52462698	Msa1061970:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TATAAACTGGGTTATACTTG+AGG	-	chr7_2:52462775-52462794	None:intergenic	30.0%
ATCACAAGTGATTCTGATAT+GGG	-	chr7_2:52462830-52462849	None:intergenic	30.0%
AATCACAAGTGATTCTGATA+TGG	-	chr7_2:52462831-52462850	None:intergenic	30.0%
TTGAGTATATTGATGAGACT+TGG	+	chr7_2:52462852-52462871	Msa1061970:CDS	30.0%
ATTACATCATACGTGATTGA+TGG	+	chr7_2:52463011-52463030	Msa1061970:intron	30.0%
GAATATTGAAGGAACAATTG+AGG	+	chr7_2:52463293-52463312	Msa1061970:CDS	30.0%
CTGTTATGTCTTGAATCAAA+GGG	-	chr7_2:52463416-52463435	None:intergenic	30.0%
CTTTGATTCAAGACATAACA+GGG	+	chr7_2:52463415-52463434	Msa1061970:CDS	30.0%
TATAAACTGGGTTATACTTG+AGG	-	chr7_2:52462775-52462794	None:intergenic	30.0%
ATCACAAGTGATTCTGATAT+GGG	-	chr7_2:52462830-52462849	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	52462632	52463590	52462632	ID=Msa1061970;Name=Msa1061970
chr7_2	mRNA	52462632	52463590	52462632	ID=Msa1061970-mRNA-1;Parent=Msa1061970;Name=Msa1061970-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0\|0\|0\|1\|1\|1\|2\|0\|225
chr7_2	exon	52462632	52462952	52462632	ID=Msa1061970-mRNA-1:exon:9473;Parent=Msa1061970-mRNA-1
chr7_2	exon	52463234	52463590	52463234	ID=Msa1061970-mRNA-1:exon:9474;Parent=Msa1061970-mRNA-1
chr7_2	CDS	52462632	52462952	52462632	ID=Msa1061970-mRNA-1:cds;Parent=Msa1061970-mRNA-1
chr7_2	CDS	52463234	52463590	52463234	ID=Msa1061970-mRNA-1:cds;Parent=Msa1061970-mRNA-1

Gene Sequence

>Msa1061970

ATGGCTACAAATCAGGAAGAAGTGAAGCTATTGGGAGCTATAGGAAGCCCATTTGTGTGTAGAGTACAGATTGCTCTAAAGTTGAAGGGAATTGAATACAAATTTCTTGAAGAAAACATGGCCAACAAAAGTGAACTTCTCCTCAAGTATAACCCAGTTTATAAAAAGATTCCAGTTTTTGTTCACAATGAAAAGCCCATATCAGAATCACTTGTGATTCTTGAGTATATTGATGAGACTTGGAAACAAAATTCAATCTTGCCTTATGATCCATACCAAAGAGCCTTGGCTAGATTTTGGTCTAACTTCATCGACGACAAGATCATAGCTGCTTCAATAAAAGCTGTTCATATCGTTGATGATGAGAAAGAGCGCGAGAAGAATATTGAAGGAACAATTGAGGCTCTACAGATTCTTGAGAATGAGCTGAAGGACAAGTTCTTTGGAGGAGAGGAGATTGGAATTGTGGATATTGCAGCTGTCTACATAGCTTTTTGGATCCCTTTGATTCAAGACATAACAGGGTTGCAATTGTTGAATGCTGAAAAGTGTCCCAAACTTTCCAAGTGGAGCCAAGAATTTCTCAACCATCCAATTGTTAAGGAAAATATGCCTCCTAGAGAACCTCTTTTTGCTTATTTCAAAGCTCACTATGAGAGCCTCTTTGCTTCAAAATAG

Protein sequence

>Msa1061970

MATNQEEVKLLGAIGSPFVCRVQIALKLKGIEYKFLEENMANKSELLLKYNPVYKKIPVFVHNEKPISESLVILEYIDETWKQNSILPYDPYQRALARFWSNFIDDKIIAASIKAVHIVDDEKEREKNIEGTIEALQILENELKDKFFGGEEIGIVDIAAVYIAFWIPLIQDITGLQLLNAEKCPKLSKWSQEFLNHPIVKENMPPREPLFAYFKAHYESLFASK*