AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0917630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0917630 MtrunA17_Chr8g0381171 83.770 191 4 1 1 164 84 274 2.41e-106 305
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0917630 AT3G26085.4 60.733 191 48 1 1 164 79 269 7.87e-77 230
Msa0917630 AT3G26085.1 60.733 191 48 1 1 164 100 290 1.39e-76 230
Msa0917630 AT3G26085.3 60.733 191 48 1 1 164 120 310 2.58e-76 230
Msa0917630 AT3G26085.2 60.733 191 48 1 1 164 129 319 5.70e-76 229

Find 47 sgRNAs with CRISPR-Local

Find 248 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGCAGTTCTGCCACTTT+TGG 0.146735 6_2:-42468941 Msa0917630:CDS
CTGGTCTCATTGCTGCTTTC+GGG 0.149947 6_2:-42472039 Msa0917630:CDS
TCTGGTCTCATTGCTGCTTT+CGG 0.246146 6_2:-42472040 Msa0917630:CDS
ACCTTTGTTGGTCTTGTATA+CGG 0.257492 6_2:-42468674 Msa0917630:CDS
GCGGTAGCTGCTTTAATCTT+TGG 0.265287 6_2:-42468898 Msa0917630:CDS
CCTTAGCTCTCTCCAACCTT+TGG 0.311835 6_2:-42469108 Msa0917630:CDS
TAATTTGCATGACATAGTTT+TGG 0.319065 6_2:+42468318 None:intergenic
CAAGCTTGCATACTGACTTC+TGG 0.334409 6_2:-42472058 Msa0917630:CDS
TGGCATCTTGAGTTGATTAC+AGG 0.340121 6_2:-42470862 Msa0917630:CDS
TAATGTTGTTATTGCCTGTT+AGG 0.340867 6_2:-42468237 Msa0917630:three_prime_UTR
GCCATAAAAGCCCTCCTATC+AGG 0.343970 6_2:+42468591 None:intergenic
TGTTTCAGGGCAACCTTTGT+TGG 0.366022 6_2:-42468686 Msa0917630:intron
ACATTTGCAAACAGATCTCT+TGG 0.391180 6_2:+42468433 None:intergenic
GAAACTATTCCTTTGCCATC+TGG 0.393537 6_2:-42468852 Msa0917630:intron
TAAATTTAACTAATCCTAAC+AGG 0.408320 6_2:+42468223 None:intergenic
AACCTCCCCGTCGATGGGTT+TGG 0.409024 6_2:-42468489 Msa0917630:three_prime_UTR
AATAGAAGGATTGCCGGTCT+TGG 0.411237 6_2:-42471684 Msa0917630:CDS
TCTCATGTTGCGTCAATAGA+AGG 0.415124 6_2:-42471698 Msa0917630:CDS
TGGTGTTATATAGTATGATT+CGG 0.432403 6_2:-42468469 Msa0917630:three_prime_UTR
TGCGTCAATAGAAGGATTGC+CGG 0.432824 6_2:-42471690 Msa0917630:CDS
CATGCAGTGAACAACCTGAT+AGG 0.453687 6_2:-42468605 Msa0917630:CDS
CTCTAGCCTTGCAGTTCCCA+TGG 0.454900 6_2:-42468633 Msa0917630:CDS
GTCCAGTTCATTCCCAAAAG+TGG 0.502847 6_2:+42468928 None:intergenic
CGGCAATATAATCCAAAGGT+TGG 0.521359 6_2:+42469096 None:intergenic
TTATTCAACCTCCCCGTCGA+TGG 0.527644 6_2:-42468495 Msa0917630:three_prime_UTR
TATTCAACCTCCCCGTCGAT+GGG 0.537338 6_2:-42468494 Msa0917630:three_prime_UTR
GTTCACTGCATGAGAAGCCA+TGG 0.542051 6_2:+42468616 None:intergenic
TTTCGGGACAGTGATTCGCC+AGG 0.545417 6_2:-42472023 Msa0917630:intron
TCTGTAGAGCAGTCCAAGAC+CGG 0.556859 6_2:+42471671 None:intergenic
TTATCTATTGAGATGGAAGA+TGG 0.561734 6_2:+42468533 None:intergenic
ATAACACCAAACCCATCGAC+GGG 0.561879 6_2:+42468483 None:intergenic
GCAGTGAACAACCTGATAGG+AGG 0.562292 6_2:-42468602 Msa0917630:CDS
TAGCGAGTTATCTATTGAGA+TGG 0.563810 6_2:+42468526 None:intergenic
TATAACACCAAACCCATCGA+CGG 0.583976 6_2:+42468482 None:intergenic
CCAAAGGTTGGAGAGAGCTA+AGG 0.600412 6_2:+42469108 None:intergenic
CAGTGAACAACCTGATAGGA+GGG 0.604035 6_2:-42468601 Msa0917630:CDS
TCCGTATACAAGACCAACAA+AGG 0.604699 6_2:+42468673 None:intergenic
CATGGGAACTGCAAGGCTAG+AGG 0.618400 6_2:+42468634 None:intergenic
TTCACTGCATGAGAAGCCAT+GGG 0.629050 6_2:+42468617 None:intergenic
GGACATGCACCAGATGGCAA+AGG 0.641457 6_2:+42468843 None:intergenic
AATTCCAGGCAAAACTGCAA+CGG 0.649711 6_2:+42469076 None:intergenic
GAGAAGCCATGGGAACTGCA+AGG 0.658768 6_2:+42468627 None:intergenic
AATGAACTGGACGAGTATTG+CGG 0.660794 6_2:-42468917 Msa0917630:CDS
GCAACGGCAATATAATCCAA+AGG 0.664800 6_2:+42469092 None:intergenic
CACCAAACCCATCGACGGGG+AGG 0.673488 6_2:+42468487 None:intergenic
TAACACCAAACCCATCGACG+GGG 0.756934 6_2:+42468484 None:intergenic
AAAGTGGCAGAACTGCGCCG+CGG 0.783792 6_2:+42468944 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTTTAGTTATCTATTTA+TGG + chr6_2:42471947-42471966 None:intergenic 10.0%
!!! AATTATTATTAGAGTTTGTT+AGG + chr6_2:42469633-42469652 None:intergenic 15.0%
!!! TAGAATATTTCATGATTTTA+GGG + chr6_2:42469705-42469724 None:intergenic 15.0%
!!! TTAGAATATTTCATGATTTT+AGG + chr6_2:42469706-42469725 None:intergenic 15.0%
!! TAAAATATGAATGAATAGTT+TGG - chr6_2:42470796-42470815 Msa0917630:intron 15.0%
!! TTTGAATATTATATAGTAGA+TGG - chr6_2:42470966-42470985 Msa0917630:intron 15.0%
!! TGATGAAAAATAAATAAGAA+CGG + chr6_2:42471225-42471244 None:intergenic 15.0%
!! ATATTATTGTTTATGTTTCA+GGG - chr6_2:42471536-42471555 Msa0917630:intron 15.0%
!!! CTACATTTTATCTTAAAAAA+TGG + chr6_2:42471855-42471874 None:intergenic 15.0%
!!! CATTTTTTAAGATAAAATGT+AGG - chr6_2:42471853-42471872 Msa0917630:intron 15.0%
!! AATAGACAATACAATAGAAT+TGG + chr6_2:42468275-42468294 None:intergenic 20.0%
!! CAATAAACATACATTTCATT+TGG - chr6_2:42468317-42468336 Msa0917630:three_prime_UTR 20.0%
!!! ACGTTATCTTTTTATCAATT+TGG + chr6_2:42468669-42468688 None:intergenic 20.0%
!!! ATGTTGTACTTTTAAGTTTA+TGG + chr6_2:42468852-42468871 None:intergenic 20.0%
!! AATTATTAAGAACATTTCAG+AGG + chr6_2:42468877-42468896 None:intergenic 20.0%
!!! TCTGAAATGTTCTTAATAAT+TGG - chr6_2:42468876-42468895 Msa0917630:CDS 20.0%
!! ATGCTATGATATATTTATTG+TGG - chr6_2:42468912-42468931 Msa0917630:CDS 20.0%
!! TGCTATGATATATTTATTGT+GGG - chr6_2:42468913-42468932 Msa0917630:CDS 20.0%
!!! ATATTTCACTGTTGATTTTA+TGG + chr6_2:42469503-42469522 None:intergenic 20.0%
!!! ATCTATTAAGGTTAGTTATT+GGG - chr6_2:42469740-42469759 Msa0917630:intron 20.0%
!!! TCCTTTTATTTCTTATTCAT+TGG - chr6_2:42470081-42470100 Msa0917630:intron 20.0%
!! ACCAATGAATAAGAAATAAA+AGG + chr6_2:42470085-42470104 None:intergenic 20.0%
!! ATTCATAGAAAATTGAATCA+CGG - chr6_2:42470351-42470370 Msa0917630:intron 20.0%
!!! AATATTTTGTTTTCCAAATC+AGG - chr6_2:42471103-42471122 Msa0917630:intron 20.0%
!!! AATCCAATTTTCAGAAATTA+GGG + chr6_2:42471416-42471435 None:intergenic 20.0%
!! AATATGATTCTAATTAGATC+AGG + chr6_2:42471521-42471540 None:intergenic 20.0%
!! CATATTATTGTTTATGTTTC+AGG - chr6_2:42471535-42471554 Msa0917630:intron 20.0%
!! AACAAAAAAATTAGATCACT+TGG - chr6_2:42471969-42471988 Msa0917630:intron 20.0%
!! TAAATTTAACTAATCCTAAC+AGG + chr6_2:42472015-42472034 None:intergenic 20.0%
!!! AATTTACCATTTTCCAAAAA+TGG - chr6_2:42472029-42472048 Msa0917630:CDS 20.0%
! TACTGAAATAGTTTCTATGA+TGG + chr6_2:42468343-42468362 None:intergenic 25.0%
! ACTATTTCAGTATATTAGCA+AGG - chr6_2:42468351-42468370 Msa0917630:three_prime_UTR 25.0%
! GTGAAAATTATTGAACATGA+AGG - chr6_2:42468803-42468822 Msa0917630:intron 25.0%
!!! TGTACTTTTAAGTTTATGGT+TGG + chr6_2:42468848-42468867 None:intergenic 25.0%
! AATACATTAGAAGTCAATTC+AGG + chr6_2:42469012-42469031 None:intergenic 25.0%
! TACAGAAGCTATAACAAAAT+TGG + chr6_2:42469098-42469117 None:intergenic 25.0%
! TATAATTCTGTAATCACCAT+TGG + chr6_2:42469239-42469258 None:intergenic 25.0%
!! CTTTTCTGTTATAAAAGAGA+GGG + chr6_2:42469680-42469699 None:intergenic 25.0%
!! ACTTTTCTGTTATAAAAGAG+AGG + chr6_2:42469681-42469700 None:intergenic 25.0%
! CAATAACTAACCTTAATAGA+TGG + chr6_2:42469741-42469760 None:intergenic 25.0%
!! CATCTATTAAGGTTAGTTAT+TGG - chr6_2:42469739-42469758 Msa0917630:intron 25.0%
! ATGTGAGTTTCAGATTTAAA+AGG + chr6_2:42469903-42469922 None:intergenic 25.0%
!!! TTTTAAATCTGAAACTCACA+TGG - chr6_2:42469902-42469921 Msa0917630:intron 25.0%
! ATAAGAAATAAAAGGAAGTG+AGG + chr6_2:42470077-42470096 None:intergenic 25.0%
! TCAAAGATAAAACACTTACT+CGG + chr6_2:42470253-42470272 None:intergenic 25.0%
! ACTCATCAATTCAAAACAAA+AGG - chr6_2:42470426-42470445 Msa0917630:intron 25.0%
!!! ATTCAATAAGTGCTACTTTA+TGG + chr6_2:42470775-42470794 None:intergenic 25.0%
! AACGAAACTAGAAATAATTC+CGG - chr6_2:42471018-42471037 Msa0917630:intron 25.0%
! CAGAGTTTAGAAAACAAAAA+TGG + chr6_2:42471081-42471100 None:intergenic 25.0%
! TAAAACAGATTTACTCTTCT+TGG - chr6_2:42471190-42471209 Msa0917630:intron 25.0%
!! CAATCCAATTTTCAGAAATT+AGG + chr6_2:42471417-42471436 None:intergenic 25.0%
! AACAACACAACAATGAAAAA+TGG + chr6_2:42471496-42471515 None:intergenic 25.0%
!!! TGGTGTTATATAGTATGATT+CGG - chr6_2:42471766-42471785 Msa0917630:intron 25.0%
!!! TAATTTGCATGACATAGTTT+TGG + chr6_2:42471920-42471939 None:intergenic 25.0%
! AAAAATTAGATCACTTGGTT+TGG - chr6_2:42471974-42471993 Msa0917630:intron 25.0%
AAATGCAACAAAGTTGGAAA+CGG + chr6_2:42468250-42468269 None:intergenic 30.0%
TTGGAAAAATGCAACAAAGT+TGG + chr6_2:42468256-42468275 None:intergenic 30.0%
AAGGAGAATTAGTTGAATTC+AGG - chr6_2:42468370-42468389 Msa0917630:three_prime_UTR 30.0%
!!! ATCTTGTTTTTACAACTTGC+AGG - chr6_2:42468512-42468531 Msa0917630:three_prime_UTR 30.0%
TAAACATTGTCTCAAACATG+TGG - chr6_2:42468701-42468720 Msa0917630:intron 30.0%
! TGAAATGCACATGACAATTT+TGG - chr6_2:42468760-42468779 Msa0917630:intron 30.0%
!! GACAATTTTGGATTTTCAAG+TGG - chr6_2:42468772-42468791 Msa0917630:intron 30.0%
TGTTCTTAATAATTGGTGTG+AGG - chr6_2:42468883-42468902 Msa0917630:CDS 30.0%
ATCCAAACTATCTTGTATTC+TGG - chr6_2:42468966-42468985 Msa0917630:intron 30.0%
TATTGTTCCCAAAGTTAGTT+AGG - chr6_2:42469051-42469070 Msa0917630:intron 30.0%
AACTAAGCCTAACTAACTTT+GGG + chr6_2:42469061-42469080 None:intergenic 30.0%
CTAACCTTAATAGATGGAAT+AGG + chr6_2:42469735-42469754 None:intergenic 30.0%
!!! TATGATAGAACACTGGTTTT+TGG + chr6_2:42469772-42469791 None:intergenic 30.0%
ACAATTACCTTAGGTTTAAG+AGG + chr6_2:42469998-42470017 None:intergenic 30.0%
CTACTCATAACAATTACCTT+AGG + chr6_2:42470007-42470026 None:intergenic 30.0%
TACAGTTAACAGAGAAAACT+GGG + chr6_2:42470137-42470156 None:intergenic 30.0%
TTACAGTTAACAGAGAAAAC+TGG + chr6_2:42470138-42470157 None:intergenic 30.0%
AAAGAACCAAAACTAACTGA+TGG + chr6_2:42470175-42470194 None:intergenic 30.0%
TAGTTAGTATTTGCAAGCTT+CGG - chr6_2:42470275-42470294 Msa0917630:intron 30.0%
TCTATGAATTCTCGTGAAAT+AGG + chr6_2:42470340-42470359 None:intergenic 30.0%
TGCACAAGACATTAAAATGA+CGG - chr6_2:42470470-42470489 Msa0917630:intron 30.0%
AAAGCTTTCGTTACCATTAA+CGG - chr6_2:42470568-42470587 Msa0917630:intron 30.0%
TTTAGTAACTCGTAACTGTT+GGG + chr6_2:42470828-42470847 None:intergenic 30.0%
ATTTAGTAACTCGTAACTGT+TGG + chr6_2:42470829-42470848 None:intergenic 30.0%
! TGTCCCTAATTTCTGAAAAT+TGG - chr6_2:42471410-42471429 Msa0917630:intron 30.0%
TTATCTATTGAGATGGAAGA+TGG + chr6_2:42471705-42471724 None:intergenic 30.0%
! TAATGTTGTTATTGCCTGTT+AGG - chr6_2:42471998-42472017 Msa0917630:intron 30.0%
TTTGGCTGGCATTAAGAAAT+CGG + chr6_2:42468418-42468437 None:intergenic 35.0%
TCTTGTGTAAAACCAAGCTT+TGG + chr6_2:42468436-42468455 None:intergenic 35.0%
CTTGTGTATGCAAATTTCCA+CGG + chr6_2:42468466-42468485 None:intergenic 35.0%
GAATTGAGAAACAGAAAAGC+AGG + chr6_2:42468622-42468641 None:intergenic 35.0%
ACCATAAAGCAATACTGTTG+TGG - chr6_2:42468728-42468747 Msa0917630:intron 35.0%
CCATAAAGCAATACTGTTGT+GGG - chr6_2:42468729-42468748 Msa0917630:intron 35.0%
CACCAGAATACAAGATAGTT+TGG + chr6_2:42468971-42468990 None:intergenic 35.0%
CAAACTATCTTGTATTCTGG+TGG - chr6_2:42468969-42468988 Msa0917630:intron 35.0%
GAACTAAGCCTAACTAACTT+TGG + chr6_2:42469062-42469081 None:intergenic 35.0%
TAGTTAGGCTTAGTTCAGTT+AGG - chr6_2:42469066-42469085 Msa0917630:intron 35.0%
! ATAACTGAGCTGATTTCTTG+TGG - chr6_2:42469265-42469284 Msa0917630:intron 35.0%
TTTCTCCTCTTATATGCAGT+TGG - chr6_2:42469340-42469359 Msa0917630:intron 35.0%
CAAAACCAACTGCATATAAG+AGG + chr6_2:42469348-42469367 None:intergenic 35.0%
!!! ATGCAGTTGGTTTTGAAATG+TGG - chr6_2:42469353-42469372 Msa0917630:intron 35.0%
!! GCTATTTGCTATTGAAGACT+TGG - chr6_2:42469422-42469441 Msa0917630:intron 35.0%
CATCTAAGTTACCTGTCTAT+TGG + chr6_2:42469476-42469495 None:intergenic 35.0%
CAATAGACAGGTAACTTAGA+TGG - chr6_2:42469474-42469493 Msa0917630:intron 35.0%
CTGTTATAAAAGAGAGGGAA+GGG + chr6_2:42469675-42469694 None:intergenic 35.0%
TCTGTTATAAAAGAGAGGGA+AGG + chr6_2:42469676-42469695 None:intergenic 35.0%
GACTCCTATTCCATCTATTA+AGG - chr6_2:42469728-42469747 Msa0917630:intron 35.0%
! TAAGGTTAGTTATTGGGCTT+AGG - chr6_2:42469746-42469765 Msa0917630:intron 35.0%
CTTCACTTATGATAGAACAC+TGG + chr6_2:42469779-42469798 None:intergenic 35.0%
CAGTGTTCTATCATAAGTGA+AGG - chr6_2:42469777-42469796 Msa0917630:intron 35.0%
TCTATCATAAGTGAAGGAAC+TGG - chr6_2:42469783-42469802 Msa0917630:intron 35.0%
! AAGCACTGTTGAATGAAGAT+TGG - chr6_2:42469856-42469875 Msa0917630:intron 35.0%
! TAAATCTGAAACTCACATGG+TGG - chr6_2:42469905-42469924 Msa0917630:intron 35.0%
! CCTTTTCAGATTCTACTACT+TGG + chr6_2:42469944-42469963 None:intergenic 35.0%
CCAAGTAGTAGAATCTGAAA+AGG - chr6_2:42469941-42469960 Msa0917630:intron 35.0%
!! ATCTGAAAAGGAAGCATTGA+AGG - chr6_2:42469953-42469972 Msa0917630:intron 35.0%
TAAAACTGATGCCTTTGCTA+TGG - chr6_2:42470224-42470243 Msa0917630:intron 35.0%
!! GTGAAATAGGAAGTGTTTGA+CGG + chr6_2:42470327-42470346 None:intergenic 35.0%
GTTACCATTAACGGAAAACT+GGG - chr6_2:42470577-42470596 Msa0917630:intron 35.0%
GTTACGAGTTACTAAATGCA+TGG - chr6_2:42470832-42470851 Msa0917630:intron 35.0%
! GCTATGAACTGATTCAGTTA+TGG + chr6_2:42470883-42470902 None:intergenic 35.0%
CCAAGCTTACACTATCTTAA+AGG + chr6_2:42470917-42470936 None:intergenic 35.0%
!! CCTTTAAGATAGTGTAAGCT+TGG - chr6_2:42470914-42470933 Msa0917630:intron 35.0%
! AAGCTTGGCATTGTTATTAG+CGG - chr6_2:42470929-42470948 Msa0917630:intron 35.0%
GTTGTGAGAAAAGTTATTGC+TGG + chr6_2:42471044-42471063 None:intergenic 35.0%
!! GTTTTAACCTCACTAATTCC+AGG + chr6_2:42471176-42471195 None:intergenic 35.0%
!!! ATCTTTGGTGTTTTGCACAT+AGG - chr6_2:42471352-42471371 Msa0917630:intron 35.0%
!! ACCTTTGTTGGTCTTGTATA+CGG - chr6_2:42471561-42471580 Msa0917630:intron 35.0%
TAGCGAGTTATCTATTGAGA+TGG + chr6_2:42471712-42471731 None:intergenic 35.0%
ACATTTGCAAACAGATCTCT+TGG + chr6_2:42471805-42471824 None:intergenic 35.0%
!!! ATGAGGCCATTTTTGGAAAA+TGG + chr6_2:42472038-42472057 None:intergenic 35.0%
!! AAAAGGAATGAGGCCATTTT+TGG + chr6_2:42472045-42472064 None:intergenic 35.0%
! AAAAATGGCCTCATTCCTTT+TGG - chr6_2:42472044-42472063 Msa0917630:CDS 35.0%
! AAAATGGCCTCATTCCTTTT+GGG - chr6_2:42472045-42472064 Msa0917630:CDS 35.0%
!!! TTCCTTTTGGGACAAAACTT+TGG - chr6_2:42472057-42472076 Msa0917630:CDS 35.0%
!! AACCAAAGTTTTGTCCCAAA+AGG + chr6_2:42472062-42472081 None:intergenic 35.0%
!! CAAAGTTGGAAACGGATTGA+AGG + chr6_2:42468242-42468261 None:intergenic 40.0%
TTACACAAGATTGTTAGCCG+TGG - chr6_2:42468446-42468465 Msa0917630:three_prime_UTR 40.0%
TCTCATGTTGCGTCAATAGA+AGG - chr6_2:42468537-42468556 Msa0917630:three_prime_UTR 40.0%
CCCACAACAGTATTGCTTTA+TGG + chr6_2:42468732-42468751 None:intergenic 40.0%
!!! GGATTTTCAAGTGGTATCAC+AGG - chr6_2:42468781-42468800 Msa0917630:intron 40.0%
ACTATCTTGTATTCTGGTGG+TGG - chr6_2:42468972-42468991 Msa0917630:intron 40.0%
CTATCTTGTATTCTGGTGGT+GGG - chr6_2:42468973-42468992 Msa0917630:intron 40.0%
!! ACTTCTCTGAAGCTAACCAA+TGG - chr6_2:42469220-42469239 Msa0917630:intron 40.0%
!! TGGCATCTTGAGTTGATTAC+AGG - chr6_2:42469373-42469392 Msa0917630:intron 40.0%
!! TTTGCTATTGAAGACTTGGC+CGG - chr6_2:42469426-42469445 Msa0917630:intron 40.0%
TCACTAGACTCAGCAAAATC+CGG + chr6_2:42469448-42469467 None:intergenic 40.0%
ATGAGCTTAGAGCTCTACAA+TGG - chr6_2:42469544-42469563 Msa0917630:intron 40.0%
!! TGGTTAAGAGCATTATGCTC+TGG + chr6_2:42469598-42469617 None:intergenic 40.0%
TTGTTAGGAGAGTTTCTCTC+TGG + chr6_2:42469618-42469637 None:intergenic 40.0%
TTCAGATTCTACTACTTGGC+AGG + chr6_2:42469940-42469959 None:intergenic 40.0%
CACAGATCCTCTTAAACCTA+AGG - chr6_2:42469988-42470007 Msa0917630:intron 40.0%
! TGCGTGAGAATTGATAATCG+TGG + chr6_2:42470051-42470070 None:intergenic 40.0%
ACCAAAACTAACTGATGGCT+CGG + chr6_2:42470170-42470189 None:intergenic 40.0%
!! AAATAGGAAGTGTTTGACGG+AGG + chr6_2:42470324-42470343 None:intergenic 40.0%
ATCAGTCATGTCGTGTAACA+AGG - chr6_2:42470387-42470406 Msa0917630:intron 40.0%
TTGATGAGTGACTACAGTGT+TGG + chr6_2:42470415-42470434 None:intergenic 40.0%
!!! TGGTTTTGGTTCTCTTCTTG+GGG + chr6_2:42470536-42470555 None:intergenic 40.0%
!!! GTGGTTTTGGTTCTCTTCTT+GGG + chr6_2:42470537-42470556 None:intergenic 40.0%
ACGAAAGCTTTCAAGCCATT+GGG + chr6_2:42470559-42470578 None:intergenic 40.0%
AACGAAAGCTTTCAAGCCAT+TGG + chr6_2:42470560-42470579 None:intergenic 40.0%
CGTTACCATTAACGGAAAAC+TGG - chr6_2:42470576-42470595 Msa0917630:intron 40.0%
TGAGACAAGTGCATAAGAGA+AGG - chr6_2:42470625-42470644 Msa0917630:intron 40.0%
TGCGTGAGAATCAATAATCG+TGG - chr6_2:42470665-42470684 Msa0917630:intron 40.0%
GCACTCCTAACAATTACCTT+TGG - chr6_2:42470710-42470729 Msa0917630:intron 40.0%
CTCCTAACAATTACCTTTGG+AGG - chr6_2:42470713-42470732 Msa0917630:intron 40.0%
AGCCTCCAAAGGTAATTGTT+AGG + chr6_2:42470718-42470737 None:intergenic 40.0%
! ATTACCTTTGGAGGCTTAAG+AGG - chr6_2:42470722-42470741 Msa0917630:intron 40.0%
TGAGAAAAGTTATTGCTGGC+CGG + chr6_2:42471040-42471059 None:intergenic 40.0%
CGGCAATATAATCCAAAGGT+TGG + chr6_2:42471142-42471161 None:intergenic 40.0%
GCAACGGCAATATAATCCAA+AGG + chr6_2:42471146-42471165 None:intergenic 40.0%
AATTCCAGGCAAAACTGCAA+CGG + chr6_2:42471162-42471181 None:intergenic 40.0%
! AGTTTTGCCTGGAATTAGTG+AGG - chr6_2:42471166-42471185 Msa0917630:intron 40.0%
ATCCTACCATCTTGAATTCC+AGG - chr6_2:42471258-42471277 Msa0917630:intron 40.0%
TTCCTGGAATTCAAGATGGT+AGG + chr6_2:42471263-42471282 None:intergenic 40.0%
GTAGTTCCTGGAATTCAAGA+TGG + chr6_2:42471267-42471286 None:intergenic 40.0%
! AATGAACTGGACGAGTATTG+CGG - chr6_2:42471318-42471337 Msa0917630:intron 40.0%
GAAACTATTCCTTTGCCATC+TGG - chr6_2:42471383-42471402 Msa0917630:intron 40.0%
CATGGAGAGGATACGATAAA+AGG + chr6_2:42471452-42471471 None:intergenic 40.0%
! CTTTTATCGTATCCTCTCCA+TGG - chr6_2:42471450-42471469 Msa0917630:intron 40.0%
TCCGTATACAAGACCAACAA+AGG + chr6_2:42471565-42471584 None:intergenic 40.0%
TATAACACCAAACCCATCGA+CGG + chr6_2:42471756-42471775 None:intergenic 40.0%
! GTTTTGTCCCAAAAGGAATG+AGG + chr6_2:42472055-42472074 None:intergenic 40.0%
!! CAAGCTTGCATACTGACTTC+TGG - chr6_2:42468177-42468196 Msa0917630:three_prime_UTR 45.0%
!! TCTGGTCTCATTGCTGCTTT+CGG - chr6_2:42468195-42468214 Msa0917630:three_prime_UTR 45.0%
!! AAACGGATTGAAGGAGAACC+TGG + chr6_2:42468233-42468252 None:intergenic 45.0%
TCTTAATGCCAGCCAAAGCT+TGG - chr6_2:42468421-42468440 Msa0917630:three_prime_UTR 45.0%
! GTGTAAAACCAAGCTTTGGC+TGG + chr6_2:42468432-42468451 None:intergenic 45.0%
TGCGTCAATAGAAGGATTGC+CGG - chr6_2:42468545-42468564 Msa0917630:three_prime_UTR 45.0%
AATAGAAGGATTGCCGGTCT+TGG - chr6_2:42468551-42468570 Msa0917630:exon 45.0%
TGGGAACAATAGTGACTGTG+TGG + chr6_2:42469042-42469061 None:intergenic 45.0%
TAGTGAAGCAGCCAATAGAC+AGG - chr6_2:42469462-42469481 Msa0917630:intron 45.0%
AGCTTAGAGCTCTACAATGG+TGG - chr6_2:42469547-42469566 Msa0917630:intron 45.0%
GCTTAGAGCTCTACAATGGT+GGG - chr6_2:42469548-42469567 Msa0917630:intron 45.0%
TGTCACACTGTCATTGCAGT+TGG - chr6_2:42469828-42469847 Msa0917630:intron 45.0%
!! AGGAAGCATTGAAGGTGAAG+TGG - chr6_2:42469961-42469980 Msa0917630:intron 45.0%
TAACAGAGAAAACTGGGAGC+AGG + chr6_2:42470131-42470150 None:intergenic 45.0%
!! TCCGAGCCATCAGTTAGTTT+TGG - chr6_2:42470166-42470185 Msa0917630:intron 45.0%
TTACTCGGACACCATAGCAA+AGG + chr6_2:42470238-42470257 None:intergenic 45.0%
!!! GGTGGTTTTGGTTCTCTTCT+TGG + chr6_2:42470538-42470557 None:intergenic 45.0%
AGAGAACCAAAACCACCCAA+TGG - chr6_2:42470541-42470560 Msa0917630:intron 45.0%
! TTCAAGCCATTGGGTGGTTT+TGG + chr6_2:42470550-42470569 None:intergenic 45.0%
AAAGCTTTCAAGCCATTGGG+TGG + chr6_2:42470556-42470575 None:intergenic 45.0%
! TGCTCCCAGTTTTCCGTTAA+TGG + chr6_2:42470584-42470603 None:intergenic 45.0%
ATTAACGGAAAACTGGGAGC+AGG - chr6_2:42470583-42470602 Msa0917630:intron 45.0%
AGTGCATAAGAGAAGGAAGC+AGG - chr6_2:42470632-42470651 Msa0917630:intron 45.0%
TGCATGCACGTTATAAGTCG+TGG - chr6_2:42470746-42470765 Msa0917630:intron 45.0%
AGAGAGCTAAGGACCTGATT+TGG + chr6_2:42471119-42471138 None:intergenic 45.0%
!! TTCCAGGAACTACTTTTCCG+CGG - chr6_2:42471274-42471293 Msa0917630:intron 45.0%
!!! TGCCACTTTTGGGAATGAAC+TGG - chr6_2:42471305-42471324 Msa0917630:intron 45.0%
GTCCAGTTCATTCCCAAAAG+TGG + chr6_2:42471310-42471329 None:intergenic 45.0%
! GCGGTAGCTGCTTTAATCTT+TGG - chr6_2:42471337-42471356 Msa0917630:intron 45.0%
! GGTGTTTTGCACATAGGCAA+TGG - chr6_2:42471358-42471377 Msa0917630:intron 45.0%
AATTAGGGACATGCACCAGA+TGG + chr6_2:42471401-42471420 None:intergenic 45.0%
TGATCTACATGCCAATGCCA+TGG + chr6_2:42471470-42471489 None:intergenic 45.0%
TGTTTCAGGGCAACCTTTGT+TGG - chr6_2:42471549-42471568 Msa0917630:intron 45.0%
TTCACTGCATGAGAAGCCAT+GGG + chr6_2:42471621-42471640 None:intergenic 45.0%
CATGCAGTGAACAACCTGAT+AGG - chr6_2:42471630-42471649 Msa0917630:intron 45.0%
CAGTGAACAACCTGATAGGA+GGG - chr6_2:42471634-42471653 Msa0917630:intron 45.0%
! ACCTGATAGGAGGGCTTTTA+TGG - chr6_2:42471643-42471662 Msa0917630:intron 45.0%
! TGATAGGAGGGCTTTTATGG+CGG - chr6_2:42471646-42471665 Msa0917630:intron 45.0%
ATAACACCAAACCCATCGAC+GGG + chr6_2:42471755-42471774 None:intergenic 45.0%
!!! TATAATATTCAAATTTTAAA+TGG + chr6_2:42470959-42470978 None:intergenic 5.0%
!! CTGGTCTCATTGCTGCTTTC+GGG - chr6_2:42468196-42468215 Msa0917630:three_prime_UTR 50.0%
TCTGTAGAGCAGTCCAAGAC+CGG + chr6_2:42468567-42468586 None:intergenic 50.0%
GAAGGGTAGTGTGTAACTCG+TGG + chr6_2:42469658-42469677 None:intergenic 50.0%
GCATCCTCTTAAGCCTCCAA+AGG + chr6_2:42470729-42470748 None:intergenic 50.0%
CCAAAGGTTGGAGAGAGCTA+AGG + chr6_2:42471130-42471149 None:intergenic 50.0%
! CCTTAGCTCTCTCCAACCTT+TGG - chr6_2:42471127-42471146 Msa0917630:intron 50.0%
! ATTGCCGTTGCAGTTTTGCC+TGG - chr6_2:42471155-42471174 Msa0917630:intron 50.0%
TCGTATCCTCTCCATGGCAT+TGG - chr6_2:42471456-42471475 Msa0917630:intron 50.0%
TACATGCCAATGCCATGGAG+AGG + chr6_2:42471465-42471484 None:intergenic 50.0%
GTTCACTGCATGAGAAGCCA+TGG + chr6_2:42471622-42471641 None:intergenic 50.0%
GCAGTGAACAACCTGATAGG+AGG - chr6_2:42471633-42471652 Msa0917630:intron 50.0%
GCCATAAAAGCCCTCCTATC+AGG + chr6_2:42471647-42471666 None:intergenic 50.0%
TTATTCAACCTCCCCGTCGA+TGG - chr6_2:42471740-42471759 Msa0917630:intron 50.0%
TATTCAACCTCCCCGTCGAT+GGG - chr6_2:42471741-42471760 Msa0917630:intron 50.0%
TAACACCAAACCCATCGACG+GGG + chr6_2:42471754-42471773 None:intergenic 50.0%
TTTCGGGACAGTGATTCGCC+AGG - chr6_2:42468212-42468231 Msa0917630:three_prime_UTR 55.0%
!!! GGCGCAGTTCTGCCACTTTT+GGG - chr6_2:42471295-42471314 Msa0917630:intron 55.0%
GGACATGCACCAGATGGCAA+AGG + chr6_2:42471395-42471414 None:intergenic 55.0%
CATGGGAACTGCAAGGCTAG+AGG + chr6_2:42471604-42471623 None:intergenic 55.0%
!! CTCTAGCCTTGCAGTTCCCA+TGG - chr6_2:42471602-42471621 Msa0917630:intron 55.0%
GAGAAGCCATGGGAACTGCA+AGG + chr6_2:42471611-42471630 None:intergenic 55.0%
CTGCTCCCGAGATCCTGTCT+CGG - chr6_2:42470507-42470526 Msa0917630:intron 60.0%
GGTCACCGAGACAGGATCTC+GGG + chr6_2:42470515-42470534 None:intergenic 60.0%
GGGTCACCGAGACAGGATCT+CGG + chr6_2:42470516-42470535 None:intergenic 60.0%
CTTCTTGGGGTCACCGAGAC+AGG + chr6_2:42470523-42470542 None:intergenic 60.0%
CGCCGCGGAAAAGTAGTTCC+TGG + chr6_2:42471279-42471298 None:intergenic 60.0%
AAAGTGGCAGAACTGCGCCG+CGG + chr6_2:42471294-42471313 None:intergenic 60.0%
!!! CGGCGCAGTTCTGCCACTTT+TGG - chr6_2:42471294-42471313 Msa0917630:intron 60.0%
! AACCTCCCCGTCGATGGGTT+TGG - chr6_2:42471746-42471765 Msa0917630:intron 60.0%
CACCAAACCCATCGACGGGG+AGG + chr6_2:42471751-42471770 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_2 gene 42468165 42472092 42468165 ID=Msa0917630;Name=Msa0917630
chr6_2 mRNA 42468165 42472092 42468165 ID=Msa0917630-mRNA-1;Parent=Msa0917630;Name=Msa0917630-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.8|0.83|1|0.8|0.83|6|403|164
chr6_2 exon 42468165 42468700 42468165 ID=Msa0917630-mRNA-1:exon:6831;Parent=Msa0917630-mRNA-1
chr6_2 exon 42468853 42468977 42468853 ID=Msa0917630-mRNA-1:exon:6830;Parent=Msa0917630-mRNA-1
chr6_2 exon 42469070 42469132 42469070 ID=Msa0917630-mRNA-1:exon:6829;Parent=Msa0917630-mRNA-1
chr6_2 exon 42470855 42470898 42470855 ID=Msa0917630-mRNA-1:exon:6828;Parent=Msa0917630-mRNA-1
chr6_2 exon 42471663 42471723 42471663 ID=Msa0917630-mRNA-1:exon:6827;Parent=Msa0917630-mRNA-1
chr6_2 exon 42472024 42472092 42472024 ID=Msa0917630-mRNA-1:exon:6826;Parent=Msa0917630-mRNA-1
chr6_2 CDS 42472024 42472092 42472024 ID=Msa0917630-mRNA-1:cds;Parent=Msa0917630-mRNA-1
chr6_2 CDS 42471663 42471723 42471663 ID=Msa0917630-mRNA-1:cds;Parent=Msa0917630-mRNA-1
chr6_2 CDS 42470855 42470898 42470855 ID=Msa0917630-mRNA-1:cds;Parent=Msa0917630-mRNA-1
chr6_2 CDS 42469070 42469132 42469070 ID=Msa0917630-mRNA-1:cds;Parent=Msa0917630-mRNA-1
chr6_2 CDS 42468853 42468977 42468853 ID=Msa0917630-mRNA-1:cds;Parent=Msa0917630-mRNA-1
chr6_2 CDS 42468568 42468700 42468568 ID=Msa0917630-mRNA-1:cds;Parent=Msa0917630-mRNA-1
chr6_2 three_prime_UTR 42468165 42468567 42468165 ID=Msa0917630-mRNA-1:three_prime_utr;Parent=Msa0917630-mRNA-1
Gene Sequence

>Msa0917630

AGTGCTGTGCTTCAAGCTTGCATACTGACTTCTGGTCTCATTGCTGCTTTCGGGACAGTGATTCGCCAGGTGTCTCATGTTGCGTCAATAGAAGGATTGCCGGTCTTGGACTGCTCTACAGAAGTATCATTTGGTTTTGAAATGTGGCATCTTGAGTTGATTACAGGAATTGTAGTCCTTAGCTCTCTCCAACCTTTGGATTATATTGCCGTTGCAGTTTTGCCTGGAATTAGTGAGGAACTACTTTTCCGCGGCGCAGTTCTGCCACTTTTGGGAATGAACTGGACGAGTATTGCGGTAGCTGCTTTAATCTTTGGTGTTTTGCACATAGGCAATGGTCGAAACTATTCCTTTGCCATCTGGGCAACCTTTGTTGGTCTTGTATACGGATATGCTACAGTTTTATCCTCTAGCCTTGCAGTTCCCATGGCTTCTCATGCAGTGAACAACCTGATAGGAGGGCTTTTATGGCGGTACACATCAAAGCAGAAATGA

Protein sequence

>Msa0917630

SAVLQACILTSGLIAAFGTVIRQVSHVASIEGLPVLDCSTEVSFGFEMWHLELITGIVVLSSLQPLDYIAVAVLPGISEELLFRGAVLPLLGMNWTSIAVAALIFGVLHIGNGRNYSFAIWATFVGLVYGYATVLSSSLAVPMASHAVNNLIGGLLWRYTSKQK*