Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350310 | AES68135.1 | 76.754 | 228 | 29 | 4 | 29 | 253 | 8 | 214 | 1.76e-85 | 270 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350310 | G7IUV6 | 76.754 | 228 | 29 | 4 | 29 | 253 | 8 | 214 | 8.41e-86 | 270 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022310 | Msa1350310 | 0.815960 | 7.072855e-52 | -8.615850e-47 |
| Msa0048000 | Msa1350310 | 0.818257 | 2.153692e-52 | -8.615850e-47 |
| Msa0069260 | Msa1350310 | 0.823018 | 1.736083e-53 | -8.615850e-47 |
| Msa0069310 | Msa1350310 | 0.836143 | 1.112002e-56 | -8.615850e-47 |
| Msa0101810 | Msa1350310 | -0.800176 | 1.629452e-48 | -8.615850e-47 |
| Msa0102750 | Msa1350310 | 0.818361 | 2.040628e-52 | -8.615850e-47 |
| Msa0105420 | Msa1350310 | 0.833681 | 4.637495e-56 | -8.615850e-47 |
| Msa1350310 | Msa1379850 | 0.800438 | 1.441072e-48 | -8.615850e-47 |
| Msa1350310 | Msa1390120 | 0.826909 | 2.093752e-54 | -8.615850e-47 |
| Msa1350310 | Msa1395530 | 0.831431 | 1.675962e-55 | -8.615850e-47 |
| Msa1350310 | Msa1404540 | 0.821439 | 4.034532e-53 | -8.615850e-47 |
| Msa1350310 | Msa1429360 | -0.806406 | 8.355524e-50 | -8.615850e-47 |
| Msa1350310 | Msa1431060 | 0.812378 | 4.368316e-51 | -8.615850e-47 |
| Msa1350310 | Msa1439960 | 0.802617 | 5.152258e-49 | -8.615850e-47 |
| Msa1350310 | Msa1447110 | 0.805018 | 1.634529e-49 | -8.615850e-47 |
| Msa1350310 | Msa1451620 | -0.805095 | 1.574841e-49 | -8.615850e-47 |
| Msa0691050 | Msa1350310 | 0.803047 | 4.199891e-49 | -8.615850e-47 |
| Msa0754720 | Msa1350310 | -0.803585 | 3.248975e-49 | -8.615850e-47 |
| Msa0133980 | Msa1350310 | -0.800624 | 1.320820e-48 | -8.615850e-47 |
| Msa0215320 | Msa1350310 | -0.802483 | 5.491384e-49 | -8.615850e-47 |
| Msa0217400 | Msa1350310 | 0.802180 | 6.338556e-49 | -8.615850e-47 |
| Msa1264020 | Msa1350310 | 0.807430 | 5.075337e-50 | -8.615850e-47 |
| Msa1269580 | Msa1350310 | -0.806773 | 6.991169e-50 | -8.615850e-47 |
| Msa0414950 | Msa1350310 | -0.820532 | 6.527877e-53 | -8.615850e-47 |
| Msa0436280 | Msa1350310 | -0.808534 | 2.955045e-50 | -8.615850e-47 |
| Msa0467900 | Msa1350310 | -0.807966 | 3.904818e-50 | -8.615850e-47 |
| Msa0473240 | Msa1350310 | 0.819486 | 1.132276e-52 | -8.615850e-47 |
| Msa0990960 | Msa1350310 | 0.811140 | 8.125796e-51 | -8.615850e-47 |
| Msa1040120 | Msa1350310 | 0.802383 | 5.758797e-49 | -8.615850e-47 |
| Msa1043920 | Msa1350310 | 0.824613 | 7.340025e-54 | -8.615850e-47 |
| Msa1075220 | Msa1350310 | -0.823078 | 1.681269e-53 | -8.615850e-47 |
| Msa0249560 | Msa1350310 | 0.821928 | 3.110087e-53 | -8.615850e-47 |
| Msa0258760 | Msa1350310 | 0.804506 | 2.090639e-49 | -8.615850e-47 |
| Msa0260810 | Msa1350310 | 0.816284 | 5.987018e-52 | -8.615850e-47 |
| Msa0266000 | Msa1350310 | -0.815228 | 1.029204e-51 | -8.615850e-47 |
| Msa0307110 | Msa1350310 | 0.808230 | 3.430228e-50 | -8.615850e-47 |
| Msa0335040 | Msa1350310 | 0.802265 | 6.090981e-49 | -8.615850e-47 |
| Msa1116130 | Msa1350310 | -0.805846 | 1.096206e-49 | -8.615850e-47 |
| Msa1139000 | Msa1350310 | -0.815511 | 8.905085e-52 | -8.615850e-47 |
| Msa1162550 | Msa1350310 | -0.824741 | 6.849051e-54 | -8.615850e-47 |
| Msa1217860 | Msa1350310 | 0.807100 | 5.962010e-50 | -8.615850e-47 |
| Msa0517490 | Msa1350310 | 0.802761 | 4.811169e-49 | -8.615850e-47 |
| Msa0526710 | Msa1350310 | 0.800831 | 1.198126e-48 | -8.615850e-47 |
| Msa0562440 | Msa1350310 | 0.816070 | 6.684759e-52 | -8.615850e-47 |
| Msa0574760 | Msa1350310 | -0.827188 | 1.795926e-54 | -8.615850e-47 |
| Msa0870530 | Msa1350310 | 0.816212 | 6.212666e-52 | -8.615850e-47 |
| Msa0891040 | Msa1350310 | 0.804624 | 1.976005e-49 | -8.615850e-47 |
| Msa0896220 | Msa1350310 | 0.804904 | 1.726439e-49 | -8.615850e-47 |
| Msa0903700 | Msa1350310 | 0.819443 | 1.158277e-52 | -8.615850e-47 |
| Msa0930910 | Msa1350310 | -0.821349 | 4.232059e-53 | -8.615850e-47 |
| Msa0933440 | Msa1350310 | 0.804543 | 2.053692e-49 | -8.615850e-47 |
| Msa0973150 | Msa1350310 | 0.805134 | 1.545674e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1350310 | MtrunA17_Chr2g0332961 | 71.429 | 224 | 39 | 5 | 34 | 253 | 3 | 205 | 2.71e-83 | 253 |
| Msa1350310 | MtrunA17_Chr2g0325261 | 41.241 | 274 | 99 | 5 | 30 | 247 | 39 | 306 | 6.66e-47 | 158 |
| Msa1350310 | MtrunA17_Chr2g0325341 | 41.241 | 274 | 99 | 5 | 30 | 247 | 39 | 306 | 6.66e-47 | 158 |
| Msa1350310 | MtrunA17_Chr2g0325651 | 40.316 | 253 | 94 | 5 | 30 | 232 | 53 | 298 | 8.83e-43 | 149 |
| Msa1350310 | MtrunA17_Chr2g0325651 | 40.741 | 135 | 62 | 5 | 109 | 232 | 259 | 386 | 1.28e-13 | 69.7 |
| Msa1350310 | MtrunA17_Chr5g0434741 | 38.521 | 257 | 113 | 4 | 30 | 248 | 40 | 289 | 9.39e-40 | 139 |
| Msa1350310 | MtrunA17_Chr2g0325351 | 35.735 | 347 | 97 | 8 | 27 | 253 | 38 | 378 | 1.78e-36 | 136 |
| Msa1350310 | MtrunA17_Chr2g0325661 | 36.585 | 287 | 112 | 6 | 26 | 252 | 78 | 354 | 2.11e-34 | 130 |
| Msa1350310 | MtrunA17_Chr2g0325661 | 42.553 | 94 | 54 | 0 | 139 | 232 | 280 | 373 | 1.19e-12 | 67.4 |
| Msa1350310 | MtrunA17_Chr2g0325741 | 39.648 | 227 | 95 | 7 | 33 | 223 | 82 | 302 | 1.78e-33 | 123 |
| Msa1350310 | MtrunA17_Chr2g0325781 | 36.466 | 266 | 91 | 10 | 29 | 253 | 57 | 285 | 3.72e-31 | 117 |
| Msa1350310 | MtrunA17_Chr2g0325701 | 34.877 | 324 | 106 | 7 | 29 | 253 | 58 | 375 | 6.85e-29 | 114 |
| Msa1350310 | MtrunA17_Chr2g0325761 | 37.906 | 277 | 110 | 7 | 32 | 252 | 79 | 349 | 1.69e-28 | 113 |
| Msa1350310 | MtrunA17_Chr2g0325761 | 42.391 | 92 | 53 | 0 | 139 | 230 | 492 | 583 | 8.45e-12 | 64.7 |
| Msa1350310 | MtrunA17_Chr2g0325761 | 40.972 | 144 | 78 | 2 | 117 | 253 | 319 | 462 | 8.45e-11 | 61.6 |
| Msa1350310 | MtrunA17_Chr2g0325861 | 63.043 | 92 | 34 | 0 | 51 | 142 | 65 | 156 | 1.04e-27 | 111 |
| Msa1350310 | MtrunA17_Chr2g0325861 | 44.928 | 138 | 67 | 3 | 121 | 253 | 498 | 631 | 1.87e-18 | 84.3 |
| Msa1350310 | MtrunA17_Chr2g0325861 | 41.739 | 115 | 56 | 1 | 139 | 253 | 446 | 549 | 5.41e-14 | 71.2 |
| Msa1350310 | MtrunA17_Chr2g0325861 | 40.458 | 131 | 61 | 3 | 126 | 252 | 541 | 658 | 6.60e-12 | 65.1 |
| Msa1350310 | MtrunA17_Chr5g0416271 | 33.779 | 299 | 109 | 7 | 8 | 248 | 1 | 268 | 7.12e-27 | 108 |
| Msa1350310 | MtrunA17_Chr5g0416271 | 47.414 | 116 | 44 | 3 | 87 | 202 | 219 | 317 | 1.06e-14 | 73.2 |
| Msa1350310 | MtrunA17_Chr5g0416271 | 38.889 | 144 | 70 | 1 | 105 | 230 | 174 | 317 | 8.43e-14 | 70.5 |
| Msa1350310 | MtrunA17_Chr2g0325231 | 50.000 | 144 | 57 | 3 | 121 | 253 | 500 | 639 | 5.18e-25 | 103 |
| Msa1350310 | MtrunA17_Chr2g0325231 | 37.946 | 224 | 99 | 7 | 28 | 225 | 52 | 261 | 2.54e-22 | 95.9 |
| Msa1350310 | MtrunA17_Chr2g0325231 | 34.437 | 151 | 79 | 2 | 120 | 253 | 450 | 597 | 4.77e-11 | 62.8 |
| Msa1350310 | MtrunA17_Chr2g0325711 | 38.174 | 241 | 109 | 8 | 33 | 251 | 57 | 279 | 6.67e-25 | 103 |
| Msa1350310 | MtrunA17_Chr2g0325711 | 33.136 | 169 | 86 | 3 | 103 | 246 | 285 | 451 | 5.63e-11 | 62.4 |
| Msa1350310 | MtrunA17_Chr6g0471251 | 34.962 | 266 | 106 | 8 | 23 | 233 | 75 | 328 | 1.39e-24 | 102 |
| Msa1350310 | MtrunA17_Chr2g0325221 | 35.125 | 279 | 132 | 12 | 8 | 252 | 51 | 314 | 5.99e-24 | 100 |
| Msa1350310 | MtrunA17_Chr2g0325221 | 40.397 | 151 | 61 | 3 | 121 | 253 | 316 | 455 | 2.34e-16 | 78.2 |
| Msa1350310 | MtrunA17_Chr2g0325221 | 43.284 | 134 | 59 | 4 | 132 | 248 | 425 | 558 | 2.12e-12 | 66.6 |
| Msa1350310 | MtrunA17_Chr2g0325221 | 46.296 | 108 | 54 | 1 | 126 | 229 | 405 | 512 | 2.31e-12 | 66.2 |
| Msa1350310 | MtrunA17_Chr2g0325321 | 51.220 | 123 | 47 | 4 | 51 | 166 | 43 | 159 | 2.07e-23 | 99.0 |
| Msa1350310 | MtrunA17_Chr2g0325321 | 43.966 | 116 | 62 | 1 | 141 | 253 | 463 | 578 | 7.76e-15 | 73.9 |
| Msa1350310 | MtrunA17_Chr2g0325321 | 42.105 | 133 | 66 | 3 | 96 | 224 | 449 | 574 | 3.78e-14 | 71.6 |
| Msa1350310 | MtrunA17_Chr2g0325281 | 46.099 | 141 | 59 | 4 | 33 | 166 | 29 | 159 | 4.68e-23 | 97.8 |
| Msa1350310 | MtrunA17_Chr2g0325281 | 35.052 | 194 | 100 | 5 | 81 | 253 | 222 | 410 | 2.85e-15 | 75.1 |
| Msa1350310 | MtrunA17_Chr2g0325281 | 43.966 | 116 | 62 | 1 | 141 | 253 | 463 | 578 | 1.34e-14 | 73.2 |
| Msa1350310 | MtrunA17_Chr2g0325281 | 44.737 | 114 | 57 | 2 | 115 | 224 | 463 | 574 | 1.62e-13 | 69.7 |
| Msa1350310 | MtrunA17_Chr2g0325241 | 35.808 | 229 | 105 | 6 | 28 | 253 | 66 | 255 | 7.70e-22 | 93.6 |
| Msa1350310 | MtrunA17_Chr7g0235901 | 33.607 | 244 | 101 | 6 | 58 | 253 | 1 | 231 | 1.69e-21 | 91.3 |
| Msa1350310 | MtrunA17_Chr2g0325691 | 34.000 | 300 | 111 | 9 | 29 | 251 | 59 | 348 | 4.46e-21 | 92.0 |
| Msa1350310 | MtrunA17_Chr2g0325691 | 53.261 | 92 | 43 | 0 | 141 | 232 | 531 | 622 | 1.17e-17 | 82.0 |
| Msa1350310 | MtrunA17_Chr2g0325691 | 40.541 | 148 | 67 | 3 | 127 | 253 | 541 | 688 | 1.61e-13 | 69.7 |
| Msa1350310 | MtrunA17_Chr2g0325691 | 37.870 | 169 | 92 | 4 | 98 | 253 | 321 | 489 | 3.94e-13 | 68.6 |
| Msa1350310 | MtrunA17_Chr2g0325691 | 37.013 | 154 | 76 | 3 | 121 | 253 | 309 | 462 | 4.20e-13 | 68.6 |
| Msa1350310 | MtrunA17_Chr2g0325691 | 40.625 | 128 | 69 | 2 | 133 | 253 | 307 | 434 | 1.15e-12 | 67.4 |
| Msa1350310 | MtrunA17_Chr2g0325611 | 35.319 | 235 | 119 | 5 | 41 | 253 | 49 | 272 | 5.53e-21 | 91.7 |
| Msa1350310 | MtrunA17_Chr2g0325721 | 44.853 | 136 | 56 | 4 | 39 | 173 | 55 | 172 | 5.06e-20 | 88.6 |
| Msa1350310 | MtrunA17_Chr2g0325721 | 33.182 | 220 | 126 | 6 | 46 | 251 | 201 | 413 | 3.40e-11 | 62.8 |
| Msa1350310 | MtrunA17_Chr2g0325811 | 36.059 | 269 | 125 | 12 | 18 | 253 | 57 | 311 | 6.48e-20 | 88.6 |
| Msa1350310 | MtrunA17_Chr2g0325811 | 36.913 | 149 | 65 | 3 | 123 | 253 | 314 | 451 | 1.40e-14 | 73.2 |
| Msa1350310 | MtrunA17_Chr2g0325361 | 40.000 | 180 | 94 | 4 | 88 | 253 | 525 | 704 | 7.68e-20 | 88.6 |
| Msa1350310 | MtrunA17_Chr2g0325361 | 39.394 | 132 | 63 | 2 | 139 | 253 | 475 | 606 | 1.47e-15 | 75.9 |
| Msa1350310 | MtrunA17_Chr2g0325361 | 50.000 | 94 | 37 | 3 | 49 | 142 | 42 | 125 | 3.48e-15 | 75.1 |
| Msa1350310 | MtrunA17_Chr2g0325361 | 47.959 | 98 | 47 | 1 | 126 | 219 | 612 | 709 | 6.38e-13 | 68.2 |
| Msa1350310 | MtrunA17_Chr2g0325361 | 43.902 | 123 | 62 | 2 | 133 | 248 | 279 | 401 | 4.42e-11 | 62.8 |
| Msa1350310 | MtrunA17_Chr2g0333341 | 34.979 | 243 | 102 | 8 | 20 | 230 | 66 | 284 | 5.06e-19 | 85.9 |
| Msa1350310 | MtrunA17_Chr2g0333341 | 38.261 | 115 | 67 | 2 | 142 | 253 | 332 | 445 | 1.92e-12 | 66.6 |
| Msa1350310 | MtrunA17_Chr2g0333341 | 36.923 | 130 | 71 | 2 | 103 | 232 | 331 | 449 | 6.89e-11 | 62.0 |
| Msa1350310 | MtrunA17_Chr2g0325791 | 51.087 | 92 | 45 | 0 | 139 | 230 | 65 | 156 | 5.65e-17 | 79.0 |
| Msa1350310 | MtrunA17_Chr2g0325621 | 47.107 | 121 | 61 | 1 | 136 | 253 | 243 | 363 | 1.34e-14 | 73.2 |
| Msa1350310 | MtrunA17_Chr2g0325621 | 29.964 | 277 | 122 | 8 | 41 | 253 | 39 | 307 | 2.56e-14 | 72.0 |
| Msa1350310 | MtrunA17_Chr2g0280141 | 50.575 | 87 | 43 | 0 | 139 | 225 | 389 | 475 | 1.52e-14 | 72.8 |
| Msa1350310 | MtrunA17_Chr2g0280141 | 43.333 | 120 | 57 | 2 | 139 | 251 | 305 | 420 | 7.45e-13 | 67.8 |
| Msa1350310 | MtrunA17_Chr2g0325801 | 44.706 | 85 | 39 | 1 | 76 | 160 | 50 | 126 | 9.70e-14 | 66.2 |
| Msa1350310 | MtrunA17_Chr2g0332951 | 79.070 | 43 | 6 | 1 | 214 | 253 | 1 | 43 | 6.79e-12 | 63.2 |
| Msa1350310 | MtrunA17_Chr5g0434751 | 43.103 | 116 | 63 | 1 | 141 | 253 | 56 | 171 | 4.28e-11 | 62.0 |
| Msa1350310 | MtrunA17_Chr2g0325641 | 34.682 | 173 | 93 | 4 | 96 | 253 | 102 | 269 | 5.97e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 9 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATATATGTTATAGGTTCTT+TGG | 0.190740 | tig0011306:-832 | Msa1350310:intron |
| TTATCGATGGCGACGATGTC+AGG | 0.391493 | tig0011306:-1081 | None:intergenic |
| GAAGGAAGAAGTAGATCAAA+AGG | 0.433938 | tig0011306:-769 | Msa1350310:intron |
| TTGGATTTAACAGCACGAAC+TGG | 0.436687 | tig0011306:-813 | Msa1350310:CDS |
| GACAGCCAAGTGGAGGTGAT+TGG | 0.458299 | tig0011306:-791 | Msa1350310:CDS |
| TCCTTCCAATCACCTCCACT+TGG | 0.468424 | tig0011306:+786 | None:intergenic |
| GCCAAGTGGAGGTGATTGGA+AGG | 0.595269 | tig0011306:-787 | Msa1350310:CDS |
| CGAACTGGACAGCCAAGTGG+AGG | 0.668743 | tig0011306:-798 | Msa1350310:CDS |
| GCACGAACTGGACAGCCAAG+TGG | 0.687309 | tig0011306:-801 | Msa1350310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATATATATTATGATAAA+CGG | + | tig0011306:234-253 | None:intergenic | 10.0% |
| !! | TATCATAATATATATGTTAT+AGG | - | tig0011306:236-255 | Msa1350310:CDS | 10.0% |
| !! | AACATATATATTATGATAAA+CGG | + | tig0011306:234-253 | None:intergenic | 10.0% |
| !! | TATCATAATATATATGTTAT+AGG | - | tig0011306:236-255 | Msa1350310:CDS | 10.0% |
| !! | AATGAAATAAGATGATTATC+AGG | + | tig0011306:103-122 | None:intergenic | 20.0% |
| !! | TATATATGTTATAGGTTCTT+TGG | - | tig0011306:244-263 | Msa1350310:CDS | 20.0% |
| !! | TAAATTCTGTAGTTAAATGA+TGG | - | tig0011306:383-402 | Msa1350310:CDS | 20.0% |
| !!! | ATTTTCTGTTAAGAAATCAA+AGG | - | tig0011306:503-522 | Msa1350310:CDS | 20.0% |
| !! | ATTGTTGAAAAAATCATTTG+AGG | - | tig0011306:641-660 | Msa1350310:CDS | 20.0% |
| !! | AATGAAATAAGATGATTATC+AGG | + | tig0011306:103-122 | None:intergenic | 20.0% |
| !! | TATATATGTTATAGGTTCTT+TGG | - | tig0011306:244-263 | Msa1350310:CDS | 20.0% |
| !! | TAAATTCTGTAGTTAAATGA+TGG | - | tig0011306:383-402 | Msa1350310:CDS | 20.0% |
| !!! | ATTTTCTGTTAAGAAATCAA+AGG | - | tig0011306:503-522 | Msa1350310:CDS | 20.0% |
| !! | ATTGTTGAAAAAATCATTTG+AGG | - | tig0011306:641-660 | Msa1350310:CDS | 20.0% |
| ! | AATCAGGATAGCATATAATA+GGG | - | tig0011306:26-45 | Msa1350310:CDS | 25.0% |
| ! | TTATCAGGATTTAAAGAAAC+AGG | + | tig0011306:88-107 | None:intergenic | 25.0% |
| ! | AAGGATAAACATTCGATAAA+TGG | + | tig0011306:160-179 | None:intergenic | 25.0% |
| ! | TTAAGATGGCAAAAAATTGA+AGG | + | tig0011306:179-198 | None:intergenic | 25.0% |
| !! | TCTTTATTTCTTCAGTGAAT+AGG | - | tig0011306:348-367 | Msa1350310:CDS | 25.0% |
| !! | CTTTATTTCTTCAGTGAATA+GGG | - | tig0011306:349-368 | Msa1350310:CDS | 25.0% |
| ! | TTTCTTAACAGAAAATTCCA+AGG | + | tig0011306:499-518 | None:intergenic | 25.0% |
| !! | CTTTTATTCATATTCAACGA+AGG | + | tig0011306:570-589 | None:intergenic | 25.0% |
| ! | CTTCGTTGAATATGAATAAA+AGG | - | tig0011306:568-587 | Msa1350310:CDS | 25.0% |
| ! | CTTCTCAATATTTCTCTTTA+TGG | + | tig0011306:709-728 | None:intergenic | 25.0% |
| ! | TCTGAAAAGAATATACTTGA+TGG | - | tig0011306:777-796 | Msa1350310:CDS | 25.0% |
| ! | AAATGAGCTTGAATCAAAAA+AGG | - | tig0011306:806-825 | Msa1350310:CDS | 25.0% |
| ! | AATGAGCTTGAATCAAAAAA+GGG | - | tig0011306:807-826 | Msa1350310:CDS | 25.0% |
| !! | TTGATTCAAATTCCTTTTGT+CGG | + | tig0011306:887-906 | None:intergenic | 25.0% |
| ! | GGAATTTGAATCAAAAGAAA+AGG | - | tig0011306:893-912 | Msa1350310:intron | 25.0% |
| ! | AATCAGGATAGCATATAATA+GGG | - | tig0011306:26-45 | Msa1350310:CDS | 25.0% |
| ! | TTATCAGGATTTAAAGAAAC+AGG | + | tig0011306:88-107 | None:intergenic | 25.0% |
| ! | AAGGATAAACATTCGATAAA+TGG | + | tig0011306:160-179 | None:intergenic | 25.0% |
| ! | TTAAGATGGCAAAAAATTGA+AGG | + | tig0011306:179-198 | None:intergenic | 25.0% |
| !! | TCTTTATTTCTTCAGTGAAT+AGG | - | tig0011306:348-367 | Msa1350310:CDS | 25.0% |
| !! | CTTTATTTCTTCAGTGAATA+GGG | - | tig0011306:349-368 | Msa1350310:CDS | 25.0% |
| ! | TTTCTTAACAGAAAATTCCA+AGG | + | tig0011306:499-518 | None:intergenic | 25.0% |
| !! | CTTTTATTCATATTCAACGA+AGG | + | tig0011306:570-589 | None:intergenic | 25.0% |
| ! | CTTCGTTGAATATGAATAAA+AGG | - | tig0011306:568-587 | Msa1350310:CDS | 25.0% |
| ! | CTTCTCAATATTTCTCTTTA+TGG | + | tig0011306:709-728 | None:intergenic | 25.0% |
| ! | TCTGAAAAGAATATACTTGA+TGG | - | tig0011306:777-796 | Msa1350310:CDS | 25.0% |
| ! | AAATGAGCTTGAATCAAAAA+AGG | - | tig0011306:806-825 | Msa1350310:CDS | 25.0% |
| ! | AATGAGCTTGAATCAAAAAA+GGG | - | tig0011306:807-826 | Msa1350310:CDS | 25.0% |
| !! | TTGATTCAAATTCCTTTTGT+CGG | + | tig0011306:887-906 | None:intergenic | 25.0% |
| ! | GGAATTTGAATCAAAAGAAA+AGG | - | tig0011306:893-912 | Msa1350310:intron | 25.0% |
| CAATCAGGATAGCATATAAT+AGG | - | tig0011306:25-44 | Msa1350310:CDS | 30.0% | |
| ! | TTTTGCCATCTTAATGCTTT+TGG | - | tig0011306:185-204 | Msa1350310:CDS | 30.0% |
| ! | TTTGCCATCTTAATGCTTTT+GGG | - | tig0011306:186-205 | Msa1350310:CDS | 30.0% |
| !! | TATTCCCAAAAGCATTAAGA+TGG | + | tig0011306:193-212 | None:intergenic | 30.0% |
| !! | TTAATGCTTTTGGGAATATG+TGG | - | tig0011306:195-214 | Msa1350310:CDS | 30.0% |
| TTATGATAAACGGTACAACA+GGG | + | tig0011306:224-243 | None:intergenic | 30.0% | |
| ATTATGATAAACGGTACAAC+AGG | + | tig0011306:225-244 | None:intergenic | 30.0% | |
| TAATGCTTCTGTTTAGAAGA+TGG | - | tig0011306:410-429 | Msa1350310:CDS | 30.0% | |
| TTGAATATGAATAAAAGGCC+AGG | - | tig0011306:573-592 | Msa1350310:CDS | 30.0% | |
| AAATCATTTGAGGAATGCAA+CGG | - | tig0011306:651-670 | Msa1350310:CDS | 30.0% | |
| AGACTCAAGTTTCTTAACTT+GGG | + | tig0011306:760-779 | None:intergenic | 30.0% | |
| TCAAAAAAGGGTGAATTTGA+TGG | - | tig0011306:819-838 | Msa1350310:CDS | 30.0% | |
| TCAAAAGAGGAGGAATTTAA+AGG | - | tig0011306:945-964 | Msa1350310:intron | 30.0% | |
| ! | CAATCTGATTCTCTTTTAAC+TGG | + | tig0011306:1061-1080 | None:intergenic | 30.0% |
| TCAGATTGAAGTACAAATCA+AGG | - | tig0011306:1073-1092 | Msa1350310:intron | 30.0% | |
| CAATCAGGATAGCATATAAT+AGG | - | tig0011306:25-44 | Msa1350310:CDS | 30.0% | |
| ! | TTTTGCCATCTTAATGCTTT+TGG | - | tig0011306:185-204 | Msa1350310:CDS | 30.0% |
| ! | TTTGCCATCTTAATGCTTTT+GGG | - | tig0011306:186-205 | Msa1350310:CDS | 30.0% |
| !! | TATTCCCAAAAGCATTAAGA+TGG | + | tig0011306:193-212 | None:intergenic | 30.0% |
| !! | TTAATGCTTTTGGGAATATG+TGG | - | tig0011306:195-214 | Msa1350310:CDS | 30.0% |
| TTATGATAAACGGTACAACA+GGG | + | tig0011306:224-243 | None:intergenic | 30.0% | |
| ATTATGATAAACGGTACAAC+AGG | + | tig0011306:225-244 | None:intergenic | 30.0% | |
| TAATGCTTCTGTTTAGAAGA+TGG | - | tig0011306:410-429 | Msa1350310:CDS | 30.0% | |
| TTGAATATGAATAAAAGGCC+AGG | - | tig0011306:573-592 | Msa1350310:CDS | 30.0% | |
| AAATCATTTGAGGAATGCAA+CGG | - | tig0011306:651-670 | Msa1350310:CDS | 30.0% | |
| AGACTCAAGTTTCTTAACTT+GGG | + | tig0011306:760-779 | None:intergenic | 30.0% | |
| TCAAAAAAGGGTGAATTTGA+TGG | - | tig0011306:819-838 | Msa1350310:CDS | 30.0% | |
| TCAAAAGAGGAGGAATTTAA+AGG | - | tig0011306:945-964 | Msa1350310:intron | 30.0% | |
| ! | CAATCTGATTCTCTTTTAAC+TGG | + | tig0011306:1061-1080 | None:intergenic | 30.0% |
| TCAGATTGAAGTACAAATCA+AGG | - | tig0011306:1073-1092 | Msa1350310:intron | 30.0% | |
| !! | ATGTCAGGTTAGTTTCAATC+AGG | - | tig0011306:10-29 | Msa1350310:CDS | 35.0% |
| AGTGCAAAAATCAAGGTTCA+TGG | + | tig0011306:62-81 | None:intergenic | 35.0% | |
| CAGGATAAGTGCAAAAATCA+AGG | + | tig0011306:69-88 | None:intergenic | 35.0% | |
| GAAGGAAGAAGTAGATCAAA+AGG | - | tig0011306:307-326 | Msa1350310:CDS | 35.0% | |
| CTGTCAAATAACCTCTTAAC+TGG | + | tig0011306:450-469 | None:intergenic | 35.0% | |
| ATTTGACAGCAACAATTCCT+TGG | - | tig0011306:461-480 | Msa1350310:CDS | 35.0% | |
| ! | ATAATTCATTTTCCTCGCTG+AGG | - | tig0011306:607-626 | Msa1350310:CDS | 35.0% |
| AATCATTTGAGGAATGCAAC+GGG | - | tig0011306:652-671 | Msa1350310:CDS | 35.0% | |
| GGAATCAACAAATAGAAGAG+TGG | - | tig0011306:673-692 | Msa1350310:intron | 35.0% | |
| CTGCAAAGAGCTAGAAAATA+AGG | - | tig0011306:731-750 | Msa1350310:intron | 35.0% | |
| CAGACTCAAGTTTCTTAACT+TGG | + | tig0011306:761-780 | None:intergenic | 35.0% | |
| CTGATTCAAAGTTCTTCACT+AGG | + | tig0011306:845-864 | None:intergenic | 35.0% | |
| GGAATTTGAAAGAAGAGTGA+AGG | - | tig0011306:914-933 | Msa1350310:intron | 35.0% | |
| ! | TAAATTCCTCCTCTTTTGAC+TGG | + | tig0011306:944-963 | None:intergenic | 35.0% |
| !! | AGTGAAAGTGTTTGAAGCAA+AGG | - | tig0011306:971-990 | Msa1350310:intron | 35.0% |
| !! | ATGTCAGGTTAGTTTCAATC+AGG | - | tig0011306:10-29 | Msa1350310:CDS | 35.0% |
| AGTGCAAAAATCAAGGTTCA+TGG | + | tig0011306:62-81 | None:intergenic | 35.0% | |
| CAGGATAAGTGCAAAAATCA+AGG | + | tig0011306:69-88 | None:intergenic | 35.0% | |
| GAAGGAAGAAGTAGATCAAA+AGG | - | tig0011306:307-326 | Msa1350310:CDS | 35.0% | |
| CTGTCAAATAACCTCTTAAC+TGG | + | tig0011306:450-469 | None:intergenic | 35.0% | |
| ATTTGACAGCAACAATTCCT+TGG | - | tig0011306:461-480 | Msa1350310:CDS | 35.0% | |
| ! | ATAATTCATTTTCCTCGCTG+AGG | - | tig0011306:607-626 | Msa1350310:CDS | 35.0% |
| AATCATTTGAGGAATGCAAC+GGG | - | tig0011306:652-671 | Msa1350310:CDS | 35.0% | |
| GGAATCAACAAATAGAAGAG+TGG | - | tig0011306:673-692 | Msa1350310:intron | 35.0% | |
| CTGCAAAGAGCTAGAAAATA+AGG | - | tig0011306:731-750 | Msa1350310:intron | 35.0% | |
| CAGACTCAAGTTTCTTAACT+TGG | + | tig0011306:761-780 | None:intergenic | 35.0% | |
| CTGATTCAAAGTTCTTCACT+AGG | + | tig0011306:845-864 | None:intergenic | 35.0% | |
| GGAATTTGAAAGAAGAGTGA+AGG | - | tig0011306:914-933 | Msa1350310:intron | 35.0% | |
| ! | TAAATTCCTCCTCTTTTGAC+TGG | + | tig0011306:944-963 | None:intergenic | 35.0% |
| !! | AGTGAAAGTGTTTGAAGCAA+AGG | - | tig0011306:971-990 | Msa1350310:intron | 35.0% |
| TTGGATTTAACAGCACGAAC+TGG | - | tig0011306:263-282 | Msa1350310:CDS | 40.0% | |
| !! | CAAGGAATTGTTGCTTTCCA+AGG | + | tig0011306:481-500 | None:intergenic | 40.0% |
| CTTGGAAAGCAACAATTCCT+TGG | - | tig0011306:479-498 | Msa1350310:CDS | 40.0% | |
| !! | GAATTATCAGCTGATTTGCC+TGG | + | tig0011306:594-613 | None:intergenic | 40.0% |
| AAATAGAAGAGTGGCGATTG+TGG | - | tig0011306:682-701 | Msa1350310:intron | 40.0% | |
| ! | AGTGTTTGAAGCAAAGGAAG+AGG | - | tig0011306:977-996 | Msa1350310:intron | 40.0% |
| GCAATTTGAAAACCAAGCTG+AGG | - | tig0011306:1019-1038 | Msa1350310:intron | 40.0% | |
| TTGGATTTAACAGCACGAAC+TGG | - | tig0011306:263-282 | Msa1350310:CDS | 40.0% | |
| !! | CAAGGAATTGTTGCTTTCCA+AGG | + | tig0011306:481-500 | None:intergenic | 40.0% |
| CTTGGAAAGCAACAATTCCT+TGG | - | tig0011306:479-498 | Msa1350310:CDS | 40.0% | |
| !! | GAATTATCAGCTGATTTGCC+TGG | + | tig0011306:594-613 | None:intergenic | 40.0% |
| AAATAGAAGAGTGGCGATTG+TGG | - | tig0011306:682-701 | Msa1350310:intron | 40.0% | |
| ! | AGTGTTTGAAGCAAAGGAAG+AGG | - | tig0011306:977-996 | Msa1350310:intron | 40.0% |
| GCAATTTGAAAACCAAGCTG+AGG | - | tig0011306:1019-1038 | Msa1350310:intron | 40.0% | |
| GAAGGAGTTCCAGTCAAAAG+AGG | - | tig0011306:932-951 | Msa1350310:intron | 45.0% | |
| GCAAAGGAAGAGGAATTCGA+AGG | - | tig0011306:987-1006 | Msa1350310:intron | 45.0% | |
| !! | CTTTGAGATTGTCCTCAGCT+TGG | + | tig0011306:1034-1053 | None:intergenic | 45.0% |
| GAAGGAGTTCCAGTCAAAAG+AGG | - | tig0011306:932-951 | Msa1350310:intron | 45.0% | |
| GCAAAGGAAGAGGAATTCGA+AGG | - | tig0011306:987-1006 | Msa1350310:intron | 45.0% | |
| !! | CTTTGAGATTGTCCTCAGCT+TGG | + | tig0011306:1034-1053 | None:intergenic | 45.0% |
| TCCTTCCAATCACCTCCACT+TGG | + | tig0011306:293-312 | None:intergenic | 50.0% | |
| CTACTGCACTGCCAGTTAAG+AGG | - | tig0011306:436-455 | Msa1350310:CDS | 50.0% | |
| TGCAAGTTCTTTCCTCAGCG+AGG | + | tig0011306:622-641 | None:intergenic | 50.0% | |
| ACATTTCGCGAGCCGACAAA+AGG | - | tig0011306:872-891 | Msa1350310:intron | 50.0% | |
| GGAGTTCCAGTCAAAAGAGG+AGG | - | tig0011306:935-954 | Msa1350310:intron | 50.0% | |
| TCCTTCCAATCACCTCCACT+TGG | + | tig0011306:293-312 | None:intergenic | 50.0% | |
| CTACTGCACTGCCAGTTAAG+AGG | - | tig0011306:436-455 | Msa1350310:CDS | 50.0% | |
| TGCAAGTTCTTTCCTCAGCG+AGG | + | tig0011306:622-641 | None:intergenic | 50.0% | |
| ACATTTCGCGAGCCGACAAA+AGG | - | tig0011306:872-891 | Msa1350310:intron | 50.0% | |
| GGAGTTCCAGTCAAAAGAGG+AGG | - | tig0011306:935-954 | Msa1350310:intron | 50.0% | |
| GACAGCCAAGTGGAGGTGAT+TGG | - | tig0011306:285-304 | Msa1350310:CDS | 55.0% | |
| GCCAAGTGGAGGTGATTGGA+AGG | - | tig0011306:289-308 | Msa1350310:CDS | 55.0% | |
| GACAGCCAAGTGGAGGTGAT+TGG | - | tig0011306:285-304 | Msa1350310:CDS | 55.0% | |
| GCCAAGTGGAGGTGATTGGA+AGG | - | tig0011306:289-308 | Msa1350310:CDS | 55.0% | |
| GCACGAACTGGACAGCCAAG+TGG | - | tig0011306:275-294 | Msa1350310:CDS | 60.0% | |
| CGAACTGGACAGCCAAGTGG+AGG | - | tig0011306:278-297 | Msa1350310:CDS | 60.0% | |
| GCACGAACTGGACAGCCAAG+TGG | - | tig0011306:275-294 | Msa1350310:CDS | 60.0% | |
| CGAACTGGACAGCCAAGTGG+AGG | - | tig0011306:278-297 | Msa1350310:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0011306 | gene | 1 | 1097 | 1 | ID=Msa1350310;Name=Msa1350310 |
| tig0011306 | mRNA | 1 | 1097 | 1 | ID=Msa1350310-mRNA-1;Parent=Msa1350310;Name=Msa1350310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.33|1|1|3|0|253 |
| tig0011306 | exon | 1082 | 1097 | 1082 | ID=Msa1350310-mRNA-1:exon:7346;Parent=Msa1350310-mRNA-1 |
| tig0011306 | exon | 770 | 840 | 770 | ID=Msa1350310-mRNA-1:exon:7345;Parent=Msa1350310-mRNA-1 |
| tig0011306 | exon | 1 | 672 | 1 | ID=Msa1350310-mRNA-1:exon:7344;Parent=Msa1350310-mRNA-1 |
| tig0011306 | CDS | 1082 | 1097 | 1082 | ID=Msa1350310-mRNA-1:cds;Parent=Msa1350310-mRNA-1 |
| tig0011306 | CDS | 770 | 840 | 770 | ID=Msa1350310-mRNA-1:cds;Parent=Msa1350310-mRNA-1 |
| tig0011306 | CDS | 1 | 672 | 1 | ID=Msa1350310-mRNA-1:cds;Parent=Msa1350310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
