AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1350310


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1350310 MtrunA17_Chr2g0332961 71.429 224 39 5 34 253 3 205 2.71e-83 253
Msa1350310 MtrunA17_Chr2g0325261 41.241 274 99 5 30 247 39 306 6.66e-47 158
Msa1350310 MtrunA17_Chr2g0325341 41.241 274 99 5 30 247 39 306 6.66e-47 158
Msa1350310 MtrunA17_Chr2g0325651 40.316 253 94 5 30 232 53 298 8.83e-43 149
Msa1350310 MtrunA17_Chr2g0325651 40.741 135 62 5 109 232 259 386 1.28e-13 69.7
Msa1350310 MtrunA17_Chr5g0434741 38.521 257 113 4 30 248 40 289 9.39e-40 139
Msa1350310 MtrunA17_Chr2g0325351 35.735 347 97 8 27 253 38 378 1.78e-36 136
Msa1350310 MtrunA17_Chr2g0325661 36.585 287 112 6 26 252 78 354 2.11e-34 130
Msa1350310 MtrunA17_Chr2g0325661 42.553 94 54 0 139 232 280 373 1.19e-12 67.4
Msa1350310 MtrunA17_Chr2g0325741 39.648 227 95 7 33 223 82 302 1.78e-33 123
Msa1350310 MtrunA17_Chr2g0325781 36.466 266 91 10 29 253 57 285 3.72e-31 117
Msa1350310 MtrunA17_Chr2g0325701 34.877 324 106 7 29 253 58 375 6.85e-29 114
Msa1350310 MtrunA17_Chr2g0325761 37.906 277 110 7 32 252 79 349 1.69e-28 113
Msa1350310 MtrunA17_Chr2g0325761 42.391 92 53 0 139 230 492 583 8.45e-12 64.7
Msa1350310 MtrunA17_Chr2g0325761 40.972 144 78 2 117 253 319 462 8.45e-11 61.6
Msa1350310 MtrunA17_Chr2g0325861 63.043 92 34 0 51 142 65 156 1.04e-27 111
Msa1350310 MtrunA17_Chr2g0325861 44.928 138 67 3 121 253 498 631 1.87e-18 84.3
Msa1350310 MtrunA17_Chr2g0325861 41.739 115 56 1 139 253 446 549 5.41e-14 71.2
Msa1350310 MtrunA17_Chr2g0325861 40.458 131 61 3 126 252 541 658 6.60e-12 65.1
Msa1350310 MtrunA17_Chr5g0416271 33.779 299 109 7 8 248 1 268 7.12e-27 108
Msa1350310 MtrunA17_Chr5g0416271 47.414 116 44 3 87 202 219 317 1.06e-14 73.2
Msa1350310 MtrunA17_Chr5g0416271 38.889 144 70 1 105 230 174 317 8.43e-14 70.5
Msa1350310 MtrunA17_Chr2g0325231 50.000 144 57 3 121 253 500 639 5.18e-25 103
Msa1350310 MtrunA17_Chr2g0325231 37.946 224 99 7 28 225 52 261 2.54e-22 95.9
Msa1350310 MtrunA17_Chr2g0325231 34.437 151 79 2 120 253 450 597 4.77e-11 62.8
Msa1350310 MtrunA17_Chr2g0325711 38.174 241 109 8 33 251 57 279 6.67e-25 103
Msa1350310 MtrunA17_Chr2g0325711 33.136 169 86 3 103 246 285 451 5.63e-11 62.4
Msa1350310 MtrunA17_Chr6g0471251 34.962 266 106 8 23 233 75 328 1.39e-24 102
Msa1350310 MtrunA17_Chr2g0325221 35.125 279 132 12 8 252 51 314 5.99e-24 100
Msa1350310 MtrunA17_Chr2g0325221 40.397 151 61 3 121 253 316 455 2.34e-16 78.2
Msa1350310 MtrunA17_Chr2g0325221 43.284 134 59 4 132 248 425 558 2.12e-12 66.6
Msa1350310 MtrunA17_Chr2g0325221 46.296 108 54 1 126 229 405 512 2.31e-12 66.2
Msa1350310 MtrunA17_Chr2g0325321 51.220 123 47 4 51 166 43 159 2.07e-23 99.0
Msa1350310 MtrunA17_Chr2g0325321 43.966 116 62 1 141 253 463 578 7.76e-15 73.9
Msa1350310 MtrunA17_Chr2g0325321 42.105 133 66 3 96 224 449 574 3.78e-14 71.6
Msa1350310 MtrunA17_Chr2g0325281 46.099 141 59 4 33 166 29 159 4.68e-23 97.8
Msa1350310 MtrunA17_Chr2g0325281 35.052 194 100 5 81 253 222 410 2.85e-15 75.1
Msa1350310 MtrunA17_Chr2g0325281 43.966 116 62 1 141 253 463 578 1.34e-14 73.2
Msa1350310 MtrunA17_Chr2g0325281 44.737 114 57 2 115 224 463 574 1.62e-13 69.7
Msa1350310 MtrunA17_Chr2g0325241 35.808 229 105 6 28 253 66 255 7.70e-22 93.6
Msa1350310 MtrunA17_Chr7g0235901 33.607 244 101 6 58 253 1 231 1.69e-21 91.3
Msa1350310 MtrunA17_Chr2g0325691 34.000 300 111 9 29 251 59 348 4.46e-21 92.0
Msa1350310 MtrunA17_Chr2g0325691 53.261 92 43 0 141 232 531 622 1.17e-17 82.0
Msa1350310 MtrunA17_Chr2g0325691 40.541 148 67 3 127 253 541 688 1.61e-13 69.7
Msa1350310 MtrunA17_Chr2g0325691 37.870 169 92 4 98 253 321 489 3.94e-13 68.6
Msa1350310 MtrunA17_Chr2g0325691 37.013 154 76 3 121 253 309 462 4.20e-13 68.6
Msa1350310 MtrunA17_Chr2g0325691 40.625 128 69 2 133 253 307 434 1.15e-12 67.4
Msa1350310 MtrunA17_Chr2g0325611 35.319 235 119 5 41 253 49 272 5.53e-21 91.7
Msa1350310 MtrunA17_Chr2g0325721 44.853 136 56 4 39 173 55 172 5.06e-20 88.6
Msa1350310 MtrunA17_Chr2g0325721 33.182 220 126 6 46 251 201 413 3.40e-11 62.8
Msa1350310 MtrunA17_Chr2g0325811 36.059 269 125 12 18 253 57 311 6.48e-20 88.6
Msa1350310 MtrunA17_Chr2g0325811 36.913 149 65 3 123 253 314 451 1.40e-14 73.2
Msa1350310 MtrunA17_Chr2g0325361 40.000 180 94 4 88 253 525 704 7.68e-20 88.6
Msa1350310 MtrunA17_Chr2g0325361 39.394 132 63 2 139 253 475 606 1.47e-15 75.9
Msa1350310 MtrunA17_Chr2g0325361 50.000 94 37 3 49 142 42 125 3.48e-15 75.1
Msa1350310 MtrunA17_Chr2g0325361 47.959 98 47 1 126 219 612 709 6.38e-13 68.2
Msa1350310 MtrunA17_Chr2g0325361 43.902 123 62 2 133 248 279 401 4.42e-11 62.8
Msa1350310 MtrunA17_Chr2g0333341 34.979 243 102 8 20 230 66 284 5.06e-19 85.9
Msa1350310 MtrunA17_Chr2g0333341 38.261 115 67 2 142 253 332 445 1.92e-12 66.6
Msa1350310 MtrunA17_Chr2g0333341 36.923 130 71 2 103 232 331 449 6.89e-11 62.0
Msa1350310 MtrunA17_Chr2g0325791 51.087 92 45 0 139 230 65 156 5.65e-17 79.0
Msa1350310 MtrunA17_Chr2g0325621 47.107 121 61 1 136 253 243 363 1.34e-14 73.2
Msa1350310 MtrunA17_Chr2g0325621 29.964 277 122 8 41 253 39 307 2.56e-14 72.0
Msa1350310 MtrunA17_Chr2g0280141 50.575 87 43 0 139 225 389 475 1.52e-14 72.8
Msa1350310 MtrunA17_Chr2g0280141 43.333 120 57 2 139 251 305 420 7.45e-13 67.8
Msa1350310 MtrunA17_Chr2g0325801 44.706 85 39 1 76 160 50 126 9.70e-14 66.2
Msa1350310 MtrunA17_Chr2g0332951 79.070 43 6 1 214 253 1 43 6.79e-12 63.2
Msa1350310 MtrunA17_Chr5g0434751 43.103 116 63 1 141 253 56 171 4.28e-11 62.0
Msa1350310 MtrunA17_Chr2g0325641 34.682 173 93 4 96 253 102 269 5.97e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 9 sgRNAs with CRISPR-Local

Find 142 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATATGTTATAGGTTCTT+TGG 0.190740 tig0011306:-832 Msa1350310:intron
TTATCGATGGCGACGATGTC+AGG 0.391493 tig0011306:-1081 None:intergenic
GAAGGAAGAAGTAGATCAAA+AGG 0.433938 tig0011306:-769 Msa1350310:intron
TTGGATTTAACAGCACGAAC+TGG 0.436687 tig0011306:-813 Msa1350310:CDS
GACAGCCAAGTGGAGGTGAT+TGG 0.458299 tig0011306:-791 Msa1350310:CDS
TCCTTCCAATCACCTCCACT+TGG 0.468424 tig0011306:+786 None:intergenic
GCCAAGTGGAGGTGATTGGA+AGG 0.595269 tig0011306:-787 Msa1350310:CDS
CGAACTGGACAGCCAAGTGG+AGG 0.668743 tig0011306:-798 Msa1350310:CDS
GCACGAACTGGACAGCCAAG+TGG 0.687309 tig0011306:-801 Msa1350310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATATATTATGATAAA+CGG + tig0011306:234-253 None:intergenic 10.0%
!! TATCATAATATATATGTTAT+AGG - tig0011306:236-255 Msa1350310:CDS 10.0%
!! AACATATATATTATGATAAA+CGG + tig0011306:234-253 None:intergenic 10.0%
!! TATCATAATATATATGTTAT+AGG - tig0011306:236-255 Msa1350310:CDS 10.0%
!! AATGAAATAAGATGATTATC+AGG + tig0011306:103-122 None:intergenic 20.0%
!! TATATATGTTATAGGTTCTT+TGG - tig0011306:244-263 Msa1350310:CDS 20.0%
!! TAAATTCTGTAGTTAAATGA+TGG - tig0011306:383-402 Msa1350310:CDS 20.0%
!!! ATTTTCTGTTAAGAAATCAA+AGG - tig0011306:503-522 Msa1350310:CDS 20.0%
!! ATTGTTGAAAAAATCATTTG+AGG - tig0011306:641-660 Msa1350310:CDS 20.0%
!! AATGAAATAAGATGATTATC+AGG + tig0011306:103-122 None:intergenic 20.0%
!! TATATATGTTATAGGTTCTT+TGG - tig0011306:244-263 Msa1350310:CDS 20.0%
!! TAAATTCTGTAGTTAAATGA+TGG - tig0011306:383-402 Msa1350310:CDS 20.0%
!!! ATTTTCTGTTAAGAAATCAA+AGG - tig0011306:503-522 Msa1350310:CDS 20.0%
!! ATTGTTGAAAAAATCATTTG+AGG - tig0011306:641-660 Msa1350310:CDS 20.0%
! AATCAGGATAGCATATAATA+GGG - tig0011306:26-45 Msa1350310:CDS 25.0%
! TTATCAGGATTTAAAGAAAC+AGG + tig0011306:88-107 None:intergenic 25.0%
! AAGGATAAACATTCGATAAA+TGG + tig0011306:160-179 None:intergenic 25.0%
! TTAAGATGGCAAAAAATTGA+AGG + tig0011306:179-198 None:intergenic 25.0%
!! TCTTTATTTCTTCAGTGAAT+AGG - tig0011306:348-367 Msa1350310:CDS 25.0%
!! CTTTATTTCTTCAGTGAATA+GGG - tig0011306:349-368 Msa1350310:CDS 25.0%
! TTTCTTAACAGAAAATTCCA+AGG + tig0011306:499-518 None:intergenic 25.0%
!! CTTTTATTCATATTCAACGA+AGG + tig0011306:570-589 None:intergenic 25.0%
! CTTCGTTGAATATGAATAAA+AGG - tig0011306:568-587 Msa1350310:CDS 25.0%
! CTTCTCAATATTTCTCTTTA+TGG + tig0011306:709-728 None:intergenic 25.0%
! TCTGAAAAGAATATACTTGA+TGG - tig0011306:777-796 Msa1350310:CDS 25.0%
! AAATGAGCTTGAATCAAAAA+AGG - tig0011306:806-825 Msa1350310:CDS 25.0%
! AATGAGCTTGAATCAAAAAA+GGG - tig0011306:807-826 Msa1350310:CDS 25.0%
!! TTGATTCAAATTCCTTTTGT+CGG + tig0011306:887-906 None:intergenic 25.0%
! GGAATTTGAATCAAAAGAAA+AGG - tig0011306:893-912 Msa1350310:intron 25.0%
! AATCAGGATAGCATATAATA+GGG - tig0011306:26-45 Msa1350310:CDS 25.0%
! TTATCAGGATTTAAAGAAAC+AGG + tig0011306:88-107 None:intergenic 25.0%
! AAGGATAAACATTCGATAAA+TGG + tig0011306:160-179 None:intergenic 25.0%
! TTAAGATGGCAAAAAATTGA+AGG + tig0011306:179-198 None:intergenic 25.0%
!! TCTTTATTTCTTCAGTGAAT+AGG - tig0011306:348-367 Msa1350310:CDS 25.0%
!! CTTTATTTCTTCAGTGAATA+GGG - tig0011306:349-368 Msa1350310:CDS 25.0%
! TTTCTTAACAGAAAATTCCA+AGG + tig0011306:499-518 None:intergenic 25.0%
!! CTTTTATTCATATTCAACGA+AGG + tig0011306:570-589 None:intergenic 25.0%
! CTTCGTTGAATATGAATAAA+AGG - tig0011306:568-587 Msa1350310:CDS 25.0%
! CTTCTCAATATTTCTCTTTA+TGG + tig0011306:709-728 None:intergenic 25.0%
! TCTGAAAAGAATATACTTGA+TGG - tig0011306:777-796 Msa1350310:CDS 25.0%
! AAATGAGCTTGAATCAAAAA+AGG - tig0011306:806-825 Msa1350310:CDS 25.0%
! AATGAGCTTGAATCAAAAAA+GGG - tig0011306:807-826 Msa1350310:CDS 25.0%
!! TTGATTCAAATTCCTTTTGT+CGG + tig0011306:887-906 None:intergenic 25.0%
! GGAATTTGAATCAAAAGAAA+AGG - tig0011306:893-912 Msa1350310:intron 25.0%
CAATCAGGATAGCATATAAT+AGG - tig0011306:25-44 Msa1350310:CDS 30.0%
! TTTTGCCATCTTAATGCTTT+TGG - tig0011306:185-204 Msa1350310:CDS 30.0%
! TTTGCCATCTTAATGCTTTT+GGG - tig0011306:186-205 Msa1350310:CDS 30.0%
!! TATTCCCAAAAGCATTAAGA+TGG + tig0011306:193-212 None:intergenic 30.0%
!! TTAATGCTTTTGGGAATATG+TGG - tig0011306:195-214 Msa1350310:CDS 30.0%
TTATGATAAACGGTACAACA+GGG + tig0011306:224-243 None:intergenic 30.0%
ATTATGATAAACGGTACAAC+AGG + tig0011306:225-244 None:intergenic 30.0%
TAATGCTTCTGTTTAGAAGA+TGG - tig0011306:410-429 Msa1350310:CDS 30.0%
TTGAATATGAATAAAAGGCC+AGG - tig0011306:573-592 Msa1350310:CDS 30.0%
AAATCATTTGAGGAATGCAA+CGG - tig0011306:651-670 Msa1350310:CDS 30.0%
AGACTCAAGTTTCTTAACTT+GGG + tig0011306:760-779 None:intergenic 30.0%
TCAAAAAAGGGTGAATTTGA+TGG - tig0011306:819-838 Msa1350310:CDS 30.0%
TCAAAAGAGGAGGAATTTAA+AGG - tig0011306:945-964 Msa1350310:intron 30.0%
! CAATCTGATTCTCTTTTAAC+TGG + tig0011306:1061-1080 None:intergenic 30.0%
TCAGATTGAAGTACAAATCA+AGG - tig0011306:1073-1092 Msa1350310:intron 30.0%
CAATCAGGATAGCATATAAT+AGG - tig0011306:25-44 Msa1350310:CDS 30.0%
! TTTTGCCATCTTAATGCTTT+TGG - tig0011306:185-204 Msa1350310:CDS 30.0%
! TTTGCCATCTTAATGCTTTT+GGG - tig0011306:186-205 Msa1350310:CDS 30.0%
!! TATTCCCAAAAGCATTAAGA+TGG + tig0011306:193-212 None:intergenic 30.0%
!! TTAATGCTTTTGGGAATATG+TGG - tig0011306:195-214 Msa1350310:CDS 30.0%
TTATGATAAACGGTACAACA+GGG + tig0011306:224-243 None:intergenic 30.0%
ATTATGATAAACGGTACAAC+AGG + tig0011306:225-244 None:intergenic 30.0%
TAATGCTTCTGTTTAGAAGA+TGG - tig0011306:410-429 Msa1350310:CDS 30.0%
TTGAATATGAATAAAAGGCC+AGG - tig0011306:573-592 Msa1350310:CDS 30.0%
AAATCATTTGAGGAATGCAA+CGG - tig0011306:651-670 Msa1350310:CDS 30.0%
AGACTCAAGTTTCTTAACTT+GGG + tig0011306:760-779 None:intergenic 30.0%
TCAAAAAAGGGTGAATTTGA+TGG - tig0011306:819-838 Msa1350310:CDS 30.0%
TCAAAAGAGGAGGAATTTAA+AGG - tig0011306:945-964 Msa1350310:intron 30.0%
! CAATCTGATTCTCTTTTAAC+TGG + tig0011306:1061-1080 None:intergenic 30.0%
TCAGATTGAAGTACAAATCA+AGG - tig0011306:1073-1092 Msa1350310:intron 30.0%
!! ATGTCAGGTTAGTTTCAATC+AGG - tig0011306:10-29 Msa1350310:CDS 35.0%
AGTGCAAAAATCAAGGTTCA+TGG + tig0011306:62-81 None:intergenic 35.0%
CAGGATAAGTGCAAAAATCA+AGG + tig0011306:69-88 None:intergenic 35.0%
GAAGGAAGAAGTAGATCAAA+AGG - tig0011306:307-326 Msa1350310:CDS 35.0%
CTGTCAAATAACCTCTTAAC+TGG + tig0011306:450-469 None:intergenic 35.0%
ATTTGACAGCAACAATTCCT+TGG - tig0011306:461-480 Msa1350310:CDS 35.0%
! ATAATTCATTTTCCTCGCTG+AGG - tig0011306:607-626 Msa1350310:CDS 35.0%
AATCATTTGAGGAATGCAAC+GGG - tig0011306:652-671 Msa1350310:CDS 35.0%
GGAATCAACAAATAGAAGAG+TGG - tig0011306:673-692 Msa1350310:intron 35.0%
CTGCAAAGAGCTAGAAAATA+AGG - tig0011306:731-750 Msa1350310:intron 35.0%
CAGACTCAAGTTTCTTAACT+TGG + tig0011306:761-780 None:intergenic 35.0%
CTGATTCAAAGTTCTTCACT+AGG + tig0011306:845-864 None:intergenic 35.0%
GGAATTTGAAAGAAGAGTGA+AGG - tig0011306:914-933 Msa1350310:intron 35.0%
! TAAATTCCTCCTCTTTTGAC+TGG + tig0011306:944-963 None:intergenic 35.0%
!! AGTGAAAGTGTTTGAAGCAA+AGG - tig0011306:971-990 Msa1350310:intron 35.0%
!! ATGTCAGGTTAGTTTCAATC+AGG - tig0011306:10-29 Msa1350310:CDS 35.0%
AGTGCAAAAATCAAGGTTCA+TGG + tig0011306:62-81 None:intergenic 35.0%
CAGGATAAGTGCAAAAATCA+AGG + tig0011306:69-88 None:intergenic 35.0%
GAAGGAAGAAGTAGATCAAA+AGG - tig0011306:307-326 Msa1350310:CDS 35.0%
CTGTCAAATAACCTCTTAAC+TGG + tig0011306:450-469 None:intergenic 35.0%
ATTTGACAGCAACAATTCCT+TGG - tig0011306:461-480 Msa1350310:CDS 35.0%
! ATAATTCATTTTCCTCGCTG+AGG - tig0011306:607-626 Msa1350310:CDS 35.0%
AATCATTTGAGGAATGCAAC+GGG - tig0011306:652-671 Msa1350310:CDS 35.0%
GGAATCAACAAATAGAAGAG+TGG - tig0011306:673-692 Msa1350310:intron 35.0%
CTGCAAAGAGCTAGAAAATA+AGG - tig0011306:731-750 Msa1350310:intron 35.0%
CAGACTCAAGTTTCTTAACT+TGG + tig0011306:761-780 None:intergenic 35.0%
CTGATTCAAAGTTCTTCACT+AGG + tig0011306:845-864 None:intergenic 35.0%
GGAATTTGAAAGAAGAGTGA+AGG - tig0011306:914-933 Msa1350310:intron 35.0%
! TAAATTCCTCCTCTTTTGAC+TGG + tig0011306:944-963 None:intergenic 35.0%
!! AGTGAAAGTGTTTGAAGCAA+AGG - tig0011306:971-990 Msa1350310:intron 35.0%
TTGGATTTAACAGCACGAAC+TGG - tig0011306:263-282 Msa1350310:CDS 40.0%
!! CAAGGAATTGTTGCTTTCCA+AGG + tig0011306:481-500 None:intergenic 40.0%
CTTGGAAAGCAACAATTCCT+TGG - tig0011306:479-498 Msa1350310:CDS 40.0%
!! GAATTATCAGCTGATTTGCC+TGG + tig0011306:594-613 None:intergenic 40.0%
AAATAGAAGAGTGGCGATTG+TGG - tig0011306:682-701 Msa1350310:intron 40.0%
! AGTGTTTGAAGCAAAGGAAG+AGG - tig0011306:977-996 Msa1350310:intron 40.0%
GCAATTTGAAAACCAAGCTG+AGG - tig0011306:1019-1038 Msa1350310:intron 40.0%
TTGGATTTAACAGCACGAAC+TGG - tig0011306:263-282 Msa1350310:CDS 40.0%
!! CAAGGAATTGTTGCTTTCCA+AGG + tig0011306:481-500 None:intergenic 40.0%
CTTGGAAAGCAACAATTCCT+TGG - tig0011306:479-498 Msa1350310:CDS 40.0%
!! GAATTATCAGCTGATTTGCC+TGG + tig0011306:594-613 None:intergenic 40.0%
AAATAGAAGAGTGGCGATTG+TGG - tig0011306:682-701 Msa1350310:intron 40.0%
! AGTGTTTGAAGCAAAGGAAG+AGG - tig0011306:977-996 Msa1350310:intron 40.0%
GCAATTTGAAAACCAAGCTG+AGG - tig0011306:1019-1038 Msa1350310:intron 40.0%
GAAGGAGTTCCAGTCAAAAG+AGG - tig0011306:932-951 Msa1350310:intron 45.0%
GCAAAGGAAGAGGAATTCGA+AGG - tig0011306:987-1006 Msa1350310:intron 45.0%
!! CTTTGAGATTGTCCTCAGCT+TGG + tig0011306:1034-1053 None:intergenic 45.0%
GAAGGAGTTCCAGTCAAAAG+AGG - tig0011306:932-951 Msa1350310:intron 45.0%
GCAAAGGAAGAGGAATTCGA+AGG - tig0011306:987-1006 Msa1350310:intron 45.0%
!! CTTTGAGATTGTCCTCAGCT+TGG + tig0011306:1034-1053 None:intergenic 45.0%
TCCTTCCAATCACCTCCACT+TGG + tig0011306:293-312 None:intergenic 50.0%
CTACTGCACTGCCAGTTAAG+AGG - tig0011306:436-455 Msa1350310:CDS 50.0%
TGCAAGTTCTTTCCTCAGCG+AGG + tig0011306:622-641 None:intergenic 50.0%
ACATTTCGCGAGCCGACAAA+AGG - tig0011306:872-891 Msa1350310:intron 50.0%
GGAGTTCCAGTCAAAAGAGG+AGG - tig0011306:935-954 Msa1350310:intron 50.0%
TCCTTCCAATCACCTCCACT+TGG + tig0011306:293-312 None:intergenic 50.0%
CTACTGCACTGCCAGTTAAG+AGG - tig0011306:436-455 Msa1350310:CDS 50.0%
TGCAAGTTCTTTCCTCAGCG+AGG + tig0011306:622-641 None:intergenic 50.0%
ACATTTCGCGAGCCGACAAA+AGG - tig0011306:872-891 Msa1350310:intron 50.0%
GGAGTTCCAGTCAAAAGAGG+AGG - tig0011306:935-954 Msa1350310:intron 50.0%
GACAGCCAAGTGGAGGTGAT+TGG - tig0011306:285-304 Msa1350310:CDS 55.0%
GCCAAGTGGAGGTGATTGGA+AGG - tig0011306:289-308 Msa1350310:CDS 55.0%
GACAGCCAAGTGGAGGTGAT+TGG - tig0011306:285-304 Msa1350310:CDS 55.0%
GCCAAGTGGAGGTGATTGGA+AGG - tig0011306:289-308 Msa1350310:CDS 55.0%
GCACGAACTGGACAGCCAAG+TGG - tig0011306:275-294 Msa1350310:CDS 60.0%
CGAACTGGACAGCCAAGTGG+AGG - tig0011306:278-297 Msa1350310:CDS 60.0%
GCACGAACTGGACAGCCAAG+TGG - tig0011306:275-294 Msa1350310:CDS 60.0%
CGAACTGGACAGCCAAGTGG+AGG - tig0011306:278-297 Msa1350310:CDS 60.0%
Chromosome Type Strat End Strand Name
tig0011306 gene 1 1097 1 ID=Msa1350310;Name=Msa1350310
tig0011306 mRNA 1 1097 1 ID=Msa1350310-mRNA-1;Parent=Msa1350310;Name=Msa1350310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.33|1|1|3|0|253
tig0011306 exon 1082 1097 1082 ID=Msa1350310-mRNA-1:exon:7346;Parent=Msa1350310-mRNA-1
tig0011306 exon 770 840 770 ID=Msa1350310-mRNA-1:exon:7345;Parent=Msa1350310-mRNA-1
tig0011306 exon 1 672 1 ID=Msa1350310-mRNA-1:exon:7344;Parent=Msa1350310-mRNA-1
tig0011306 CDS 1082 1097 1082 ID=Msa1350310-mRNA-1:cds;Parent=Msa1350310-mRNA-1
tig0011306 CDS 770 840 770 ID=Msa1350310-mRNA-1:cds;Parent=Msa1350310-mRNA-1
tig0011306 CDS 1 672 1 ID=Msa1350310-mRNA-1:cds;Parent=Msa1350310-mRNA-1
Gene Sequence

>Msa1350310

ATGGCGACGATGTCAGGTTCTTTGGATTTAACAGCACGAACTGGACAGCCAAGTGGAGGTGATTGGAAGGAAGAAGTAGATCAAAAGAAGATGGATACTACTGCACTGCCAGTTAAGAGGTTATTTGACAGCAACAATTCCTTGGAAAGCAACAATTCCTTGGAATTTTCTGTTAAGAAATCAAAGGTGTCACTATACGATGATCGTGACAAAGATGAAGACGATATTCCTTCGTTGAATATGAATAAAAGGCCAGGCAAATCAGCTGATAATTCATTTTCCTCGCTGAGGAAAGAACTTGCATTGTTGAAAAAATCATTTGAGGAATGCAACGGGAATCAACAAATAGAAGAGTGGCGATTGTGGTCCATAAAGAGAAATATTGAGAAGTGCTGCAAAGAGCTAGAAAATAAGGAGACCCAAGTTAAGAAACTTGAGTCTGAAAAGAATATACTTGATGGTCGAGTAAATGAGCTTGAATCAAAAAAGGGTGAATTTGATGGCCTAGTGAAGAACTTTGAATCAGAAAAGACACATTTCGCGAGCCGACAAAAGGAATTTGAATCAAAAGAAAAGGAATTTGAAAGAAGAGTGAAGGAGTTCCAGTCAAAAGAGGAGGAATTTAAAGGTCGAGTGAAAGTGTTTGAAGCAAAGGAAGAGGAATTCGAAGGAAAAATGCAGCAATTTGAAAACCAAGCTGAGGACAATCTCAAAGCACTCCAGTTAAAAGAGAATCAGATTGAAGTACAAATCAAGGAT

Protein sequence

>Msa1350310

MATMSGSLDLTARTGQPSGGDWKEEVDQKKMDTTALPVKRLFDSNNSLESNNSLEFSVKKSKVSLYDDRDKDEDDIPSLNMNKRPGKSADNSFSSLRKELALLKKSFEECNGNQQIEEWRLWSIKRNIEKCCKELENKETQVKKLESEKNILDGRVNELESKKGEFDGLVKNFESEKTHFASRQKEFESKEKEFERRVKEFQSKEEEFKGRVKVFEAKEEEFEGKMQQFENQAEDNLKALQLKENQIEVQIKD