AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1043920


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043920 MtrunA17_Chr1g0153711 94.712 208 11 0 1 208 1 208 7.94e-147 406
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1043920 AT1G47410.1 38.000 200 88 6 21 208 9 184 1.31e-31 114
Msa1043920 AT1G47410.2 38.000 200 88 6 21 208 9 184 1.31e-31 114

Find 61 sgRNAs with CRISPR-Local

Find 162 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTAGAGCATTCCGTCCTTTA+AGG 0.089873 7_2:-2077056 None:intergenic
CCCTAAAATAATACACTTTA+TGG 0.093718 7_2:-2077014 None:intergenic
TTAACTTAACTTTACCTTAA+AGG 0.134585 7_2:+2077042 Msa1043920:five_prime_UTR
AGTTCTGATTCTTACATTTC+TGG 0.208989 7_2:-2078042 None:intergenic
CAAAGTTACTTGAATTTATA+TGG 0.221019 7_2:+2077984 Msa1043920:exon
TCTTCATCAAGATCACTAAT+TGG 0.271099 7_2:-2077362 None:intergenic
TATACAAGATGTTTATATAT+TGG 0.271828 7_2:-2077160 None:intergenic
ATTATGTGTTACTGGGAAAA+TGG 0.272982 7_2:+2077651 Msa1043920:CDS
TGGTTGAACATTATTGAATA+AGG 0.278431 7_2:+2078064 Msa1043920:three_prime_UTR
TTGGAAGCGTTCTATAATTC+AGG 0.285690 7_2:+2077846 Msa1043920:CDS
CATTGTGAAGGATGGCCTTT+TGG 0.301790 7_2:+2077877 Msa1043920:CDS
ACAAGAGAATTATGTGTTAC+TGG 0.321124 7_2:+2077643 Msa1043920:CDS
CAATGAAGCAGGTCAATTAA+AGG 0.321544 7_2:+2077110 Msa1043920:five_prime_UTR
TTACCTCCCTCCTTTGCCTT+TGG 0.326286 7_2:-2077676 None:intergenic
GTGTATTCTTCTAGTGCTAA+TGG 0.339241 7_2:+2077751 Msa1043920:CDS
TGCAAAGCATTTGCATCTCT+TGG 0.342800 7_2:-2077255 None:intergenic
TTGACCTGCTTCATTGATAG+TGG 0.371174 7_2:-2077103 None:intergenic
ACACATAATTCTCTTGTTGC+AGG 0.374763 7_2:-2077637 None:intergenic
TGTATTCTTCTAGTGCTAAT+GGG 0.374850 7_2:+2077752 Msa1043920:CDS
TTGCATCTCTTGGAATGGTT+TGG 0.387372 7_2:-2077245 None:intergenic
CATATAAATTCAAGTAACTT+TGG 0.429792 7_2:-2077983 None:intergenic
TAGTGATCTTGATGAAGAAC+AGG 0.434961 7_2:+2077367 Msa1043920:CDS
TTTCTGGCTTTAATCAGAAT+AGG 0.450498 7_2:-2078026 None:intergenic
ATTCAAGTAACTTTGGTACT+TGG 0.457278 7_2:-2077976 None:intergenic
TTTACTTTCAGTTTCACAAT+GGG 0.475858 7_2:+2077197 Msa1043920:exon
ATGCTTTGCAGCTGCTCTGA+AGG 0.476673 7_2:+2077268 Msa1043920:CDS
TAATTGGAAACTCCTCTTCA+AGG 0.478540 7_2:-2077346 None:intergenic
AGTTGACTTGTTAACTATGC+TGG 0.478932 7_2:+2078147 Msa1043920:three_prime_UTR
AAACTCTCTCTCAGTAGGAT+TGG 0.486208 7_2:-2077598 None:intergenic
GGTTTGGTTGCTCCTCCTCA+TGG 0.490726 7_2:-2077229 None:intergenic
GGCGGTTAGAAGCCGAGCTA+TGG 0.496315 7_2:+2077558 Msa1043920:CDS
AGAAATGTAAGAATCAGAAC+TGG 0.513218 7_2:+2078044 Msa1043920:three_prime_UTR
CTAAGTCACCATCTGAATCA+TGG 0.518553 7_2:+2077935 Msa1043920:CDS
GCTTTACGACAGAGACCAAA+AGG 0.525795 7_2:-2077892 None:intergenic
AGCATTTGCATCTCTTGGAA+TGG 0.526952 7_2:-2077250 None:intergenic
CAAGAGAATTATGTGTTACT+GGG 0.534810 7_2:+2077644 Msa1043920:CDS
TTCGACCAAAAGTTTGACAC+TGG 0.545482 7_2:-2077301 None:intergenic
TCTTCTAGTGCTAATGGGGA+AGG 0.547226 7_2:+2077757 Msa1043920:CDS
CTTAACTTTACCTTAAAGGA+CGG 0.549608 7_2:+2077046 Msa1043920:five_prime_UTR
TAAAGGACGGAATGCTCTAG+TGG 0.550594 7_2:+2077059 Msa1043920:five_prime_UTR
TCAAGCTTGAACATCTTGAA+AGG 0.551732 7_2:-2077801 None:intergenic
AATGGAACCAAAGGCAAAGG+AGG 0.558037 7_2:+2077669 Msa1043920:CDS
TTCGACTACAAGCCTTGAAG+AGG 0.565475 7_2:+2077334 Msa1043920:CDS
TACTGGGAAAATGGAACCAA+AGG 0.569555 7_2:+2077660 Msa1043920:CDS
CGATACAACCATGATTCAGA+TGG 0.575454 7_2:-2077943 None:intergenic
AAGGCCACTATCAATGAAGC+AGG 0.578192 7_2:+2077099 Msa1043920:five_prime_UTR
AAAGGACGGAATGCTCTAGT+GGG 0.578314 7_2:+2077060 Msa1043920:five_prime_UTR
CATGATTCAGATGGTGACTT+AGG 0.584417 7_2:-2077934 None:intergenic
ATTTACTTTCAGTTTCACAA+TGG 0.590773 7_2:+2077196 Msa1043920:exon
TCGACCAAAAGTTTGACACT+GGG 0.608137 7_2:-2077300 None:intergenic
GTATTCTTCTAGTGCTAATG+GGG 0.608962 7_2:+2077753 Msa1043920:CDS
GATGGTGACTTAGGCAGTGG+TGG 0.623202 7_2:-2077925 None:intergenic
GGGGTTTCAATATTGCTGCA+AGG 0.632160 7_2:+2077080 Msa1043920:five_prime_UTR
GAAAATGGAACCAAAGGCAA+AGG 0.636908 7_2:+2077666 Msa1043920:CDS
ATGGAACCAAAGGCAAAGGA+GGG 0.641016 7_2:+2077670 Msa1043920:CDS
GAGGGAGGTAATGAAGAACA+AGG 0.652290 7_2:+2077688 Msa1043920:CDS
TCAGATGGTGACTTAGGCAG+TGG 0.663320 7_2:-2077928 None:intergenic
GAACCAAAGGCAAAGGAGGG+AGG 0.663364 7_2:+2077673 Msa1043920:CDS
TCTTCAGGTGATTGTCTCGG+CGG 0.664433 7_2:+2077540 Msa1043920:intron
AAGGACGGAATGCTCTAGTG+GGG 0.669921 7_2:+2077061 Msa1043920:five_prime_UTR
TGTTGCAGGAGAATATACCC+AGG 0.714302 7_2:-2077623 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACAAGATGTTTATATAT+TGG - chr7_2:2077163-2077182 None:intergenic 15.0%
!!! TCAAAAATAGTTTGATTTTA+AGG - chr7_2:2077424-2077443 None:intergenic 15.0%
!! TATACAAGATGTTTATATAT+TGG - chr7_2:2077163-2077182 None:intergenic 15.0%
!!! TCAAAAATAGTTTGATTTTA+AGG - chr7_2:2077424-2077443 None:intergenic 15.0%
!!! CCATAAAGTGTATTATTTTA+GGG + chr7_2:2077014-2077033 Msa1043920:five_prime_UTR 20.0%
!! TTAACTTAACTTTACCTTAA+AGG + chr7_2:2077042-2077061 Msa1043920:five_prime_UTR 20.0%
!!! AATTAGTTATTGTTCTTTTG+TGG + chr7_2:2077514-2077533 Msa1043920:intron 20.0%
!! CATATAAATTCAAGTAACTT+TGG - chr7_2:2077986-2078005 None:intergenic 20.0%
!! CAAAGTTACTTGAATTTATA+TGG + chr7_2:2077984-2078003 Msa1043920:exon 20.0%
!!! CCATAAAGTGTATTATTTTA+GGG + chr7_2:2077014-2077033 Msa1043920:five_prime_UTR 20.0%
!! TTAACTTAACTTTACCTTAA+AGG + chr7_2:2077042-2077061 Msa1043920:five_prime_UTR 20.0%
!!! AATTAGTTATTGTTCTTTTG+TGG + chr7_2:2077514-2077533 Msa1043920:intron 20.0%
!! CATATAAATTCAAGTAACTT+TGG - chr7_2:2077986-2078005 None:intergenic 20.0%
!! CAAAGTTACTTGAATTTATA+TGG + chr7_2:2077984-2078003 Msa1043920:exon 20.0%
!! GCCATAAAGTGTATTATTTT+AGG + chr7_2:2077013-2077032 Msa1043920:five_prime_UTR 25.0%
! CCCTAAAATAATACACTTTA+TGG - chr7_2:2077017-2077036 None:intergenic 25.0%
! ATTTACTTTCAGTTTCACAA+TGG + chr7_2:2077196-2077215 Msa1043920:exon 25.0%
! TTTACTTTCAGTTTCACAAT+GGG + chr7_2:2077197-2077216 Msa1043920:exon 25.0%
!!! TAGTTTGATTTTAAGGTTGA+AGG - chr7_2:2077417-2077436 None:intergenic 25.0%
!!! CTTGAATGATTTTGATTTGT+CGG + chr7_2:2077819-2077838 Msa1043920:CDS 25.0%
!!! ATTTTGATTTGTCGGAATAT+TGG + chr7_2:2077827-2077846 Msa1043920:CDS 25.0%
! TGGTTGAACATTATTGAATA+AGG + chr7_2:2078064-2078083 Msa1043920:three_prime_UTR 25.0%
!! GCCATAAAGTGTATTATTTT+AGG + chr7_2:2077013-2077032 Msa1043920:five_prime_UTR 25.0%
! CCCTAAAATAATACACTTTA+TGG - chr7_2:2077017-2077036 None:intergenic 25.0%
! ATTTACTTTCAGTTTCACAA+TGG + chr7_2:2077196-2077215 Msa1043920:exon 25.0%
! TTTACTTTCAGTTTCACAAT+GGG + chr7_2:2077197-2077216 Msa1043920:exon 25.0%
!!! TAGTTTGATTTTAAGGTTGA+AGG - chr7_2:2077417-2077436 None:intergenic 25.0%
!!! CTTGAATGATTTTGATTTGT+CGG + chr7_2:2077819-2077838 Msa1043920:CDS 25.0%
!!! ATTTTGATTTGTCGGAATAT+TGG + chr7_2:2077827-2077846 Msa1043920:CDS 25.0%
! TGGTTGAACATTATTGAATA+AGG + chr7_2:2078064-2078083 Msa1043920:three_prime_UTR 25.0%
CTTAACTTTACCTTAAAGGA+CGG + chr7_2:2077046-2077065 Msa1043920:five_prime_UTR 30.0%
TCTTCATCAAGATCACTAAT+TGG - chr7_2:2077365-2077384 None:intergenic 30.0%
ACAAGAGAATTATGTGTTAC+TGG + chr7_2:2077643-2077662 Msa1043920:CDS 30.0%
! CAAGAGAATTATGTGTTACT+GGG + chr7_2:2077644-2077663 Msa1043920:CDS 30.0%
! ATTATGTGTTACTGGGAAAA+TGG + chr7_2:2077651-2077670 Msa1043920:CDS 30.0%
! TGAAAGAGAAGAGTTTTTGT+CGG + chr7_2:2077711-2077730 Msa1043920:CDS 30.0%
TGTATTCTTCTAGTGCTAAT+GGG + chr7_2:2077752-2077771 Msa1043920:CDS 30.0%
ATTCAAGTAACTTTGGTACT+TGG - chr7_2:2077979-2077998 None:intergenic 30.0%
!! TTTCTGGCTTTAATCAGAAT+AGG - chr7_2:2078029-2078048 None:intergenic 30.0%
! AGTTCTGATTCTTACATTTC+TGG - chr7_2:2078045-2078064 None:intergenic 30.0%
AGAAATGTAAGAATCAGAAC+TGG + chr7_2:2078044-2078063 Msa1043920:three_prime_UTR 30.0%
CTTAACTTTACCTTAAAGGA+CGG + chr7_2:2077046-2077065 Msa1043920:five_prime_UTR 30.0%
TCTTCATCAAGATCACTAAT+TGG - chr7_2:2077365-2077384 None:intergenic 30.0%
ACAAGAGAATTATGTGTTAC+TGG + chr7_2:2077643-2077662 Msa1043920:CDS 30.0%
! CAAGAGAATTATGTGTTACT+GGG + chr7_2:2077644-2077663 Msa1043920:CDS 30.0%
! ATTATGTGTTACTGGGAAAA+TGG + chr7_2:2077651-2077670 Msa1043920:CDS 30.0%
! TGAAAGAGAAGAGTTTTTGT+CGG + chr7_2:2077711-2077730 Msa1043920:CDS 30.0%
TGTATTCTTCTAGTGCTAAT+GGG + chr7_2:2077752-2077771 Msa1043920:CDS 30.0%
ATTCAAGTAACTTTGGTACT+TGG - chr7_2:2077979-2077998 None:intergenic 30.0%
!! TTTCTGGCTTTAATCAGAAT+AGG - chr7_2:2078029-2078048 None:intergenic 30.0%
! AGTTCTGATTCTTACATTTC+TGG - chr7_2:2078045-2078064 None:intergenic 30.0%
AGAAATGTAAGAATCAGAAC+TGG + chr7_2:2078044-2078063 Msa1043920:three_prime_UTR 30.0%
CAATGAAGCAGGTCAATTAA+AGG + chr7_2:2077110-2077129 Msa1043920:five_prime_UTR 35.0%
! TTTTCCCAGTGTCAAACTTT+TGG + chr7_2:2077296-2077315 Msa1043920:CDS 35.0%
TAATTGGAAACTCCTCTTCA+AGG - chr7_2:2077349-2077368 None:intergenic 35.0%
TAGTGATCTTGATGAAGAAC+AGG + chr7_2:2077367-2077386 Msa1043920:CDS 35.0%
! GTTCTTTTGTGGTTTTCTTC+AGG + chr7_2:2077525-2077544 Msa1043920:intron 35.0%
! TTTTCTTCAGGTGATTGTCT+CGG + chr7_2:2077537-2077556 Msa1043920:intron 35.0%
!! TCTTTTGTTTCTCCATAGCT+CGG - chr7_2:2077573-2077592 None:intergenic 35.0%
ACACATAATTCTCTTGTTGC+AGG - chr7_2:2077640-2077659 None:intergenic 35.0%
GTGTATTCTTCTAGTGCTAA+TGG + chr7_2:2077751-2077770 Msa1043920:CDS 35.0%
GTATTCTTCTAGTGCTAATG+GGG + chr7_2:2077753-2077772 Msa1043920:CDS 35.0%
TCAAGCTTGAACATCTTGAA+AGG - chr7_2:2077804-2077823 None:intergenic 35.0%
!! TTGGAAGCGTTCTATAATTC+AGG + chr7_2:2077846-2077865 Msa1043920:CDS 35.0%
!! AGTTTTGTCATTGTGAAGGA+TGG + chr7_2:2077869-2077888 Msa1043920:CDS 35.0%
!! AGTTGACTTGTTAACTATGC+TGG + chr7_2:2078147-2078166 Msa1043920:three_prime_UTR 35.0%
CAATGAAGCAGGTCAATTAA+AGG + chr7_2:2077110-2077129 Msa1043920:five_prime_UTR 35.0%
! TTTTCCCAGTGTCAAACTTT+TGG + chr7_2:2077296-2077315 Msa1043920:CDS 35.0%
TAATTGGAAACTCCTCTTCA+AGG - chr7_2:2077349-2077368 None:intergenic 35.0%
TAGTGATCTTGATGAAGAAC+AGG + chr7_2:2077367-2077386 Msa1043920:CDS 35.0%
! GTTCTTTTGTGGTTTTCTTC+AGG + chr7_2:2077525-2077544 Msa1043920:intron 35.0%
! TTTTCTTCAGGTGATTGTCT+CGG + chr7_2:2077537-2077556 Msa1043920:intron 35.0%
!! TCTTTTGTTTCTCCATAGCT+CGG - chr7_2:2077573-2077592 None:intergenic 35.0%
ACACATAATTCTCTTGTTGC+AGG - chr7_2:2077640-2077659 None:intergenic 35.0%
GTGTATTCTTCTAGTGCTAA+TGG + chr7_2:2077751-2077770 Msa1043920:CDS 35.0%
GTATTCTTCTAGTGCTAATG+GGG + chr7_2:2077753-2077772 Msa1043920:CDS 35.0%
TCAAGCTTGAACATCTTGAA+AGG - chr7_2:2077804-2077823 None:intergenic 35.0%
!! TTGGAAGCGTTCTATAATTC+AGG + chr7_2:2077846-2077865 Msa1043920:CDS 35.0%
!! AGTTTTGTCATTGTGAAGGA+TGG + chr7_2:2077869-2077888 Msa1043920:CDS 35.0%
!! AGTTGACTTGTTAACTATGC+TGG + chr7_2:2078147-2078166 Msa1043920:three_prime_UTR 35.0%
TTGACCTGCTTCATTGATAG+TGG - chr7_2:2077106-2077125 None:intergenic 40.0%
! AATGGGTGTTTTCTACCATG+AGG + chr7_2:2077214-2077233 Msa1043920:exon 40.0%
TTGCATCTCTTGGAATGGTT+TGG - chr7_2:2077248-2077267 None:intergenic 40.0%
AGCATTTGCATCTCTTGGAA+TGG - chr7_2:2077253-2077272 None:intergenic 40.0%
! TGCAAAGCATTTGCATCTCT+TGG - chr7_2:2077258-2077277 None:intergenic 40.0%
TCGACCAAAAGTTTGACACT+GGG - chr7_2:2077303-2077322 None:intergenic 40.0%
TTCGACCAAAAGTTTGACAC+TGG - chr7_2:2077304-2077323 None:intergenic 40.0%
! AAACTTTTGGTCGAAGTCGA+AGG + chr7_2:2077309-2077328 Msa1043920:CDS 40.0%
AAACTCTCTCTCAGTAGGAT+TGG - chr7_2:2077601-2077620 None:intergenic 40.0%
AGGAAAAACTCTCTCTCAGT+AGG - chr7_2:2077606-2077625 None:intergenic 40.0%
! TACTGAGAGAGAGTTTTTCC+TGG + chr7_2:2077605-2077624 Msa1043920:CDS 40.0%
! ACTGAGAGAGAGTTTTTCCT+GGG + chr7_2:2077606-2077625 Msa1043920:CDS 40.0%
TACTGGGAAAATGGAACCAA+AGG + chr7_2:2077660-2077679 Msa1043920:CDS 40.0%
GAAAATGGAACCAAAGGCAA+AGG + chr7_2:2077666-2077685 Msa1043920:CDS 40.0%
!! CAGGAGTTTTGTCATTGTGA+AGG + chr7_2:2077865-2077884 Msa1043920:CDS 40.0%
CATGATTCAGATGGTGACTT+AGG - chr7_2:2077937-2077956 None:intergenic 40.0%
CTAAGTCACCATCTGAATCA+TGG + chr7_2:2077935-2077954 Msa1043920:CDS 40.0%
CGATACAACCATGATTCAGA+TGG - chr7_2:2077946-2077965 None:intergenic 40.0%
TTGACCTGCTTCATTGATAG+TGG - chr7_2:2077106-2077125 None:intergenic 40.0%
! AATGGGTGTTTTCTACCATG+AGG + chr7_2:2077214-2077233 Msa1043920:exon 40.0%
TTGCATCTCTTGGAATGGTT+TGG - chr7_2:2077248-2077267 None:intergenic 40.0%
AGCATTTGCATCTCTTGGAA+TGG - chr7_2:2077253-2077272 None:intergenic 40.0%
! TGCAAAGCATTTGCATCTCT+TGG - chr7_2:2077258-2077277 None:intergenic 40.0%
TCGACCAAAAGTTTGACACT+GGG - chr7_2:2077303-2077322 None:intergenic 40.0%
TTCGACCAAAAGTTTGACAC+TGG - chr7_2:2077304-2077323 None:intergenic 40.0%
! AAACTTTTGGTCGAAGTCGA+AGG + chr7_2:2077309-2077328 Msa1043920:CDS 40.0%
AAACTCTCTCTCAGTAGGAT+TGG - chr7_2:2077601-2077620 None:intergenic 40.0%
AGGAAAAACTCTCTCTCAGT+AGG - chr7_2:2077606-2077625 None:intergenic 40.0%
! TACTGAGAGAGAGTTTTTCC+TGG + chr7_2:2077605-2077624 Msa1043920:CDS 40.0%
! ACTGAGAGAGAGTTTTTCCT+GGG + chr7_2:2077606-2077625 Msa1043920:CDS 40.0%
TACTGGGAAAATGGAACCAA+AGG + chr7_2:2077660-2077679 Msa1043920:CDS 40.0%
GAAAATGGAACCAAAGGCAA+AGG + chr7_2:2077666-2077685 Msa1043920:CDS 40.0%
!! CAGGAGTTTTGTCATTGTGA+AGG + chr7_2:2077865-2077884 Msa1043920:CDS 40.0%
CATGATTCAGATGGTGACTT+AGG - chr7_2:2077937-2077956 None:intergenic 40.0%
CTAAGTCACCATCTGAATCA+TGG + chr7_2:2077935-2077954 Msa1043920:CDS 40.0%
CGATACAACCATGATTCAGA+TGG - chr7_2:2077946-2077965 None:intergenic 40.0%
! CTAGAGCATTCCGTCCTTTA+AGG - chr7_2:2077059-2077078 None:intergenic 45.0%
TAAAGGACGGAATGCTCTAG+TGG + chr7_2:2077059-2077078 Msa1043920:five_prime_UTR 45.0%
AAAGGACGGAATGCTCTAGT+GGG + chr7_2:2077060-2077079 Msa1043920:five_prime_UTR 45.0%
GGGGTTTCAATATTGCTGCA+AGG + chr7_2:2077080-2077099 Msa1043920:five_prime_UTR 45.0%
AAGGCCACTATCAATGAAGC+AGG + chr7_2:2077099-2077118 Msa1043920:five_prime_UTR 45.0%
TTCGACTACAAGCCTTGAAG+AGG + chr7_2:2077334-2077353 Msa1043920:CDS 45.0%
TGTTGCAGGAGAATATACCC+AGG - chr7_2:2077626-2077645 None:intergenic 45.0%
AATGGAACCAAAGGCAAAGG+AGG + chr7_2:2077669-2077688 Msa1043920:CDS 45.0%
ATGGAACCAAAGGCAAAGGA+GGG + chr7_2:2077670-2077689 Msa1043920:CDS 45.0%
GAGGGAGGTAATGAAGAACA+AGG + chr7_2:2077688-2077707 Msa1043920:CDS 45.0%
TCTTCTAGTGCTAATGGGGA+AGG + chr7_2:2077757-2077776 Msa1043920:CDS 45.0%
! CATTGTGAAGGATGGCCTTT+TGG + chr7_2:2077877-2077896 Msa1043920:CDS 45.0%
GCTTTACGACAGAGACCAAA+AGG - chr7_2:2077895-2077914 None:intergenic 45.0%
! CTAGAGCATTCCGTCCTTTA+AGG - chr7_2:2077059-2077078 None:intergenic 45.0%
TAAAGGACGGAATGCTCTAG+TGG + chr7_2:2077059-2077078 Msa1043920:five_prime_UTR 45.0%
AAAGGACGGAATGCTCTAGT+GGG + chr7_2:2077060-2077079 Msa1043920:five_prime_UTR 45.0%
GGGGTTTCAATATTGCTGCA+AGG + chr7_2:2077080-2077099 Msa1043920:five_prime_UTR 45.0%
AAGGCCACTATCAATGAAGC+AGG + chr7_2:2077099-2077118 Msa1043920:five_prime_UTR 45.0%
TTCGACTACAAGCCTTGAAG+AGG + chr7_2:2077334-2077353 Msa1043920:CDS 45.0%
TGTTGCAGGAGAATATACCC+AGG - chr7_2:2077626-2077645 None:intergenic 45.0%
AATGGAACCAAAGGCAAAGG+AGG + chr7_2:2077669-2077688 Msa1043920:CDS 45.0%
ATGGAACCAAAGGCAAAGGA+GGG + chr7_2:2077670-2077689 Msa1043920:CDS 45.0%
GAGGGAGGTAATGAAGAACA+AGG + chr7_2:2077688-2077707 Msa1043920:CDS 45.0%
TCTTCTAGTGCTAATGGGGA+AGG + chr7_2:2077757-2077776 Msa1043920:CDS 45.0%
! CATTGTGAAGGATGGCCTTT+TGG + chr7_2:2077877-2077896 Msa1043920:CDS 45.0%
GCTTTACGACAGAGACCAAA+AGG - chr7_2:2077895-2077914 None:intergenic 45.0%
AAGGACGGAATGCTCTAGTG+GGG + chr7_2:2077061-2077080 Msa1043920:five_prime_UTR 50.0%
! GGGTGTTTTCTACCATGAGG+AGG + chr7_2:2077217-2077236 Msa1043920:CDS 50.0%
ATGCTTTGCAGCTGCTCTGA+AGG + chr7_2:2077268-2077287 Msa1043920:CDS 50.0%
TCTTCAGGTGATTGTCTCGG+CGG + chr7_2:2077540-2077559 Msa1043920:intron 50.0%
TTACCTCCCTCCTTTGCCTT+TGG - chr7_2:2077679-2077698 None:intergenic 50.0%
TCAGATGGTGACTTAGGCAG+TGG - chr7_2:2077931-2077950 None:intergenic 50.0%
AAGGACGGAATGCTCTAGTG+GGG + chr7_2:2077061-2077080 Msa1043920:five_prime_UTR 50.0%
! GGGTGTTTTCTACCATGAGG+AGG + chr7_2:2077217-2077236 Msa1043920:CDS 50.0%
ATGCTTTGCAGCTGCTCTGA+AGG + chr7_2:2077268-2077287 Msa1043920:CDS 50.0%
TCTTCAGGTGATTGTCTCGG+CGG + chr7_2:2077540-2077559 Msa1043920:intron 50.0%
TTACCTCCCTCCTTTGCCTT+TGG - chr7_2:2077679-2077698 None:intergenic 50.0%
TCAGATGGTGACTTAGGCAG+TGG - chr7_2:2077931-2077950 None:intergenic 50.0%
! GGTTTGGTTGCTCCTCCTCA+TGG - chr7_2:2077232-2077251 None:intergenic 55.0%
GAACCAAAGGCAAAGGAGGG+AGG + chr7_2:2077673-2077692 Msa1043920:CDS 55.0%
GATGGTGACTTAGGCAGTGG+TGG - chr7_2:2077928-2077947 None:intergenic 55.0%
! GGTTTGGTTGCTCCTCCTCA+TGG - chr7_2:2077232-2077251 None:intergenic 55.0%
GAACCAAAGGCAAAGGAGGG+AGG + chr7_2:2077673-2077692 Msa1043920:CDS 55.0%
GATGGTGACTTAGGCAGTGG+TGG - chr7_2:2077928-2077947 None:intergenic 55.0%
GGCGGTTAGAAGCCGAGCTA+TGG + chr7_2:2077558-2077577 Msa1043920:CDS 60.0%
GGCGGTTAGAAGCCGAGCTA+TGG + chr7_2:2077558-2077577 Msa1043920:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 2076940 2078175 2076940 ID=Msa1043920;Name=Msa1043920
chr7_2 mRNA 2076940 2078175 2076940 ID=Msa1043920-mRNA-1;Parent=Msa1043920;Name=Msa1043920-mRNA-1;_AED=0.00;_eAED=0.00;_QI=275|1|1|1|1|1|2|179|208
chr7_2 exon 2076940 2077391 2076940 ID=Msa1043920-mRNA-1:exon:433;Parent=Msa1043920-mRNA-1
chr7_2 exon 2077547 2078175 2077547 ID=Msa1043920-mRNA-1:exon:434;Parent=Msa1043920-mRNA-1
chr7_2 five_prime_UTR 2076940 2077214 2076940 ID=Msa1043920-mRNA-1:five_prime_utr;Parent=Msa1043920-mRNA-1
chr7_2 CDS 2077215 2077391 2077215 ID=Msa1043920-mRNA-1:cds;Parent=Msa1043920-mRNA-1
chr7_2 CDS 2077547 2077996 2077547 ID=Msa1043920-mRNA-1:cds;Parent=Msa1043920-mRNA-1
chr7_2 three_prime_UTR 2077997 2078175 2077997 ID=Msa1043920-mRNA-1:three_prime_utr;Parent=Msa1043920-mRNA-1
Gene Sequence

>Msa1043920

ATGGGTGTTTTCTACCATGAGGAGGAGCAACCAAACCATTCCAAGAGATGCAAATGCTTTGCAGCTGCTCTGAAGGAAGTTTTTTCCCAGTGTCAAACTTTTGGTCGAAGTCGAAGGTTTTCGACTACAAGCCTTGAAGAGGAGTTTCCAATTAGTGATCTTGATGAAGAACAGGAAGTGATTGTCTCGGCGGTTAGAAGCCGAGCTATGGAGAAACAAAAGAACAAGCCAATCCTACTGAGAGAGAGTTTTTCCTGGGTATATTCTCCTGCAACAAGAGAATTATGTGTTACTGGGAAAATGGAACCAAAGGCAAAGGAGGGAGGTAATGAAGAACAAGGTGAAAGAGAAGAGTTTTTGTCGGTTAAAAGCTGTTTCTCAGTGTATTCTTCTAGTGCTAATGGGGAAGGATTTTATTCTGTGAAGACTAACCTTTCAAGATGTTCAAGCTTGAATGATTTTGATTTGTCGGAATATTGGAAGCGTTCTATAATTCAGGAGTTTTGTCATTGTGAAGGATGGCCTTTTGGTCTCTGTCGTAAAGCTGTGTTACTACCACCACTGCCTAAGTCACCATCTGAATCATGGTTGTATCGTAAAATACTACCAAGTACCAAAGTTACTTGA

Protein sequence

>Msa1043920

MGVFYHEEEQPNHSKRCKCFAAALKEVFSQCQTFGRSRRFSTTSLEEEFPISDLDEEQEVIVSAVRSRAMEKQKNKPILLRESFSWVYSPATRELCVTGKMEPKAKEGGNEEQGEREEFLSVKSCFSVYSSSANGEGFYSVKTNLSRCSSLNDFDLSEYWKRSIIQEFCHCEGWPFGLCRKAVLLPPLPKSPSESWLYRKILPSTKVT*