Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396780 | XP_013468980.1 | 96.838 | 253 | 6 | 2 | 1 | 251 | 1 | 253 | 1.27e-177 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396780 | sp|O24407|IAA16_ARATH | 66.000 | 250 | 59 | 6 | 14 | 251 | 1 | 236 | 4.55e-102 | 299 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396780 | A0A072VMG8 | 96.838 | 253 | 6 | 2 | 1 | 251 | 1 | 253 | 6.05e-178 | 498 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1396780 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003050 | Msa1396780 | 0.806130 | 9.553679e-50 | -8.615850e-47 |
| Msa0005000 | Msa1396780 | -0.807900 | 4.032213e-50 | -8.615850e-47 |
| Msa0014570 | Msa1396780 | 0.850848 | 1.302545e-60 | -8.615850e-47 |
| Msa0015120 | Msa1396780 | 0.807144 | 5.833250e-50 | -8.615850e-47 |
| Msa0027390 | Msa1396780 | 0.815015 | 1.147975e-51 | -8.615850e-47 |
| Msa0032320 | Msa1396780 | 0.961238 | 1.803008e-119 | -8.615850e-47 |
| Msa0032370 | Msa1396780 | 0.815112 | 1.092407e-51 | -8.615850e-47 |
| Msa0039250 | Msa1396780 | 0.805687 | 1.183452e-49 | -8.615850e-47 |
| Msa0048000 | Msa1396780 | 0.841276 | 5.242931e-58 | -8.615850e-47 |
| Msa0050730 | Msa1396780 | 0.802819 | 4.681043e-49 | -8.615850e-47 |
| Msa0050760 | Msa1396780 | 0.805524 | 1.280886e-49 | -8.615850e-47 |
| Msa0064290 | Msa1396780 | 0.803100 | 4.094927e-49 | -8.615850e-47 |
| Msa0077450 | Msa1396780 | 0.808565 | 2.909582e-50 | -8.615850e-47 |
| Msa0098390 | Msa1396780 | -0.805860 | 1.088713e-49 | -8.615850e-47 |
| Msa0101880 | Msa1396780 | 0.822622 | 2.146792e-53 | -8.615850e-47 |
| Msa0108390 | Msa1396780 | 0.827786 | 1.290910e-54 | -8.615850e-47 |
| Msa0114540 | Msa1396780 | -0.809709 | 1.655102e-50 | -8.615850e-47 |
| Msa0119320 | Msa1396780 | 0.807787 | 4.262298e-50 | -8.615850e-47 |
| Msa1352540 | Msa1396780 | -0.803212 | 3.881985e-49 | -8.615850e-47 |
| Msa1366300 | Msa1396780 | 0.810312 | 1.227175e-50 | -8.615850e-47 |
| Msa1376890 | Msa1396780 | 0.830296 | 3.181526e-55 | -8.615850e-47 |
| Msa1379590 | Msa1396780 | 0.842996 | 1.837885e-58 | -8.615850e-47 |
| Msa1379850 | Msa1396780 | 0.826516 | 2.598949e-54 | -8.615850e-47 |
| Msa1390120 | Msa1396780 | 0.817784 | 2.755545e-52 | -8.615850e-47 |
| Msa1392700 | Msa1396780 | 0.800784 | 1.224836e-48 | -8.615850e-47 |
| Msa1393410 | Msa1396780 | 0.808283 | 3.342096e-50 | -8.615850e-47 |
| Msa1395530 | Msa1396780 | 0.820950 | 5.231278e-53 | -8.615850e-47 |
| Msa1396780 | Msa1398860 | 0.816662 | 4.926337e-52 | -8.615850e-47 |
| Msa1396780 | Msa1399140 | 0.807740 | 4.361126e-50 | -8.615850e-47 |
| Msa1396780 | Msa1401270 | 0.819621 | 1.055183e-52 | -8.615850e-47 |
| Msa1396780 | Msa1404540 | 0.836789 | 7.613984e-57 | -8.615850e-47 |
| Msa1396780 | Msa1418260 | 0.811770 | 5.929317e-51 | -8.615850e-47 |
| Msa1396780 | Msa1420250 | 0.810430 | 1.157062e-50 | -8.615850e-47 |
| Msa1396780 | Msa1423880 | 0.802716 | 4.915999e-49 | -8.615850e-47 |
| Msa1396780 | Msa1424640 | 0.847098 | 1.433384e-59 | -8.615850e-47 |
| Msa1396780 | Msa1431060 | 0.848975 | 4.350995e-60 | -8.615850e-47 |
| Msa1396780 | Msa1433220 | 0.821515 | 3.875992e-53 | -8.615850e-47 |
| Msa1396780 | Msa1435400 | 0.852728 | 3.815965e-61 | -8.615850e-47 |
| Msa1396780 | Msa1435420 | 0.807248 | 5.546024e-50 | -8.615850e-47 |
| Msa1396780 | Msa1440600 | 0.805111 | 1.562893e-49 | -8.615850e-47 |
| Msa1396780 | Msa1440740 | 0.810600 | 1.063239e-50 | -8.615850e-47 |
| Msa1396780 | Msa1440940 | 0.832831 | 7.551943e-56 | -8.615850e-47 |
| Msa1396780 | Msa1447150 | 0.800229 | 1.589770e-48 | -8.615850e-47 |
| Msa1396780 | Msa1457430 | 0.809633 | 1.718009e-50 | -8.615850e-47 |
| Msa1396780 | Msa1459180 | 0.834152 | 3.535151e-56 | -8.615850e-47 |
| Msa0608200 | Msa1396780 | 0.801460 | 8.909020e-49 | -8.615850e-47 |
| Msa0626280 | Msa1396780 | 0.802971 | 4.355800e-49 | -8.615850e-47 |
| Msa0648520 | Msa1396780 | 0.800734 | 1.254370e-48 | -8.615850e-47 |
| Msa0658570 | Msa1396780 | 0.826783 | 2.244335e-54 | -8.615850e-47 |
| Msa0677080 | Msa1396780 | 0.802479 | 5.501044e-49 | -8.615850e-47 |
| Msa0689760 | Msa1396780 | 0.811835 | 5.740013e-51 | -8.615850e-47 |
| Msa0691050 | Msa1396780 | 0.841714 | 4.018933e-58 | -8.615850e-47 |
| Msa0693380 | Msa1396780 | 0.820118 | 8.123029e-53 | -8.615850e-47 |
| Msa0702590 | Msa1396780 | 0.800853 | 1.185776e-48 | -8.615850e-47 |
| Msa0703490 | Msa1396780 | 0.805978 | 1.028072e-49 | -8.615850e-47 |
| Msa0740720 | Msa1396780 | 0.813553 | 2.415393e-51 | -8.615850e-47 |
| Msa0743680 | Msa1396780 | 0.807605 | 4.658248e-50 | -8.615850e-47 |
| Msa0747720 | Msa1396780 | -0.813149 | 2.961624e-51 | -8.615850e-47 |
| Msa0751260 | Msa1396780 | 0.816675 | 4.893767e-52 | -8.615850e-47 |
| Msa0756530 | Msa1396780 | 0.815129 | 1.083071e-51 | -8.615850e-47 |
| Msa0784410 | Msa1396780 | 0.806450 | 8.176313e-50 | -8.615850e-47 |
| Msa0800700 | Msa1396780 | 0.802923 | 4.456134e-49 | -8.615850e-47 |
| Msa0818160 | Msa1396780 | 0.822816 | 1.934867e-53 | -8.615850e-47 |
| Msa0837410 | Msa1396780 | 0.806885 | 6.619214e-50 | -8.615850e-47 |
| Msa0133720 | Msa1396780 | 0.815541 | 8.767940e-52 | -8.615850e-47 |
| Msa0133820 | Msa1396780 | 0.808095 | 3.664212e-50 | -8.615850e-47 |
| Msa0135420 | Msa1396780 | 0.801934 | 7.124317e-49 | -8.615850e-47 |
| Msa0140860 | Msa1396780 | 0.805036 | 1.620400e-49 | -8.615850e-47 |
| Msa0142200 | Msa1396780 | 0.800294 | 1.541581e-48 | -8.615850e-47 |
| Msa0142460 | Msa1396780 | 0.835254 | 1.867032e-56 | -8.615850e-47 |
| Msa0144790 | Msa1396780 | 0.832529 | 8.975793e-56 | -8.615850e-47 |
| Msa0145070 | Msa1396780 | 0.818492 | 1.905569e-52 | -8.615850e-47 |
| Msa0154440 | Msa1396780 | 0.838001 | 3.726313e-57 | -8.615850e-47 |
| Msa0165300 | Msa1396780 | 0.816684 | 4.872194e-52 | -8.615850e-47 |
| Msa0169820 | Msa1396780 | 0.800312 | 1.529034e-48 | -8.615850e-47 |
| Msa0170140 | Msa1396780 | 0.811575 | 6.536602e-51 | -8.615850e-47 |
| Msa0172400 | Msa1396780 | 0.889925 | 1.565037e-73 | -8.615850e-47 |
| Msa0191250 | Msa1396780 | 0.802991 | 4.313705e-49 | -8.615850e-47 |
| Msa0191890 | Msa1396780 | 0.820016 | 8.569281e-53 | -8.615850e-47 |
| Msa0196340 | Msa1396780 | 0.841812 | 3.786413e-58 | -8.615850e-47 |
| Msa0206790 | Msa1396780 | 0.823315 | 1.479642e-53 | -8.615850e-47 |
| Msa0210620 | Msa1396780 | 0.835452 | 1.664427e-56 | -8.615850e-47 |
| Msa0212040 | Msa1396780 | 0.801723 | 7.870849e-49 | -8.615850e-47 |
| Msa0213040 | Msa1396780 | 0.836333 | 9.953981e-57 | -8.615850e-47 |
| Msa0217400 | Msa1396780 | 0.811333 | 7.379928e-51 | -8.615850e-47 |
| Msa0227230 | Msa1396780 | 0.805609 | 1.228993e-49 | -8.615850e-47 |
| Msa0227470 | Msa1396780 | 0.805899 | 1.068003e-49 | -8.615850e-47 |
| Msa0230370 | Msa1396780 | 0.836382 | 9.671474e-57 | -8.615850e-47 |
| Msa0238230 | Msa1396780 | 0.865299 | 6.529160e-65 | -8.615850e-47 |
| Msa1227330 | Msa1396780 | 0.815063 | 1.120238e-51 | -8.615850e-47 |
| Msa1262960 | Msa1396780 | 0.808024 | 3.795524e-50 | -8.615850e-47 |
| Msa1302060 | Msa1396780 | 0.811151 | 8.081393e-51 | -8.615850e-47 |
| Msa1317580 | Msa1396780 | 0.834763 | 2.483250e-56 | -8.615850e-47 |
| Msa1319820 | Msa1396780 | 0.824983 | 6.006602e-54 | -8.615850e-47 |
| Msa1338830 | Msa1396780 | 0.830956 | 2.193075e-55 | -8.615850e-47 |
| Msa0376590 | Msa1396780 | 0.803415 | 3.523989e-49 | -8.615850e-47 |
| Msa0388960 | Msa1396780 | 0.802476 | 5.510916e-49 | -8.615850e-47 |
| Msa0403660 | Msa1396780 | 0.824132 | 9.525548e-54 | -8.615850e-47 |
| Msa0411410 | Msa1396780 | 0.800147 | 1.651914e-48 | -8.615850e-47 |
| Msa0422500 | Msa1396780 | 0.832036 | 1.188401e-55 | -8.615850e-47 |
| Msa0436370 | Msa1396780 | 0.826700 | 2.349274e-54 | -8.615850e-47 |
| Msa0450350 | Msa1396780 | 0.845060 | 5.137959e-59 | -8.615850e-47 |
| Msa0452920 | Msa1396780 | 0.806259 | 8.970756e-50 | -8.615850e-47 |
| Msa0456910 | Msa1396780 | 0.813780 | 2.152738e-51 | -8.615850e-47 |
| Msa0468800 | Msa1396780 | 0.814757 | 1.309734e-51 | -8.615850e-47 |
| Msa0480800 | Msa1396780 | 0.819556 | 1.091408e-52 | -8.615850e-47 |
| Msa1010070 | Msa1396780 | 0.814466 | 1.518980e-51 | -8.615850e-47 |
| Msa1021510 | Msa1396780 | 0.850938 | 1.228142e-60 | -8.615850e-47 |
| Msa1031930 | Msa1396780 | 0.809930 | 1.483588e-50 | -8.615850e-47 |
| Msa1032170 | Msa1396780 | 0.809942 | 1.474652e-50 | -8.615850e-47 |
| Msa1033970 | Msa1396780 | 0.800263 | 1.564277e-48 | -8.615850e-47 |
| Msa1037650 | Msa1396780 | -0.821972 | 3.038321e-53 | -8.615850e-47 |
| Msa1040520 | Msa1396780 | 0.818128 | 2.304155e-52 | -8.615850e-47 |
| Msa1071770 | Msa1396780 | 0.804658 | 1.943625e-49 | -8.615850e-47 |
| Msa1080160 | Msa1396780 | 0.802294 | 6.005960e-49 | -8.615850e-47 |
| Msa1084260 | Msa1396780 | 0.804658 | 1.943479e-49 | -8.615850e-47 |
| Msa1085300 | Msa1396780 | 0.810848 | 9.398365e-51 | -8.615850e-47 |
| Msa1087980 | Msa1396780 | 0.819290 | 1.255194e-52 | -8.615850e-47 |
| Msa1096210 | Msa1396780 | 0.805828 | 1.105692e-49 | -8.615850e-47 |
| Msa1105500 | Msa1396780 | 0.851578 | 8.100956e-61 | -8.615850e-47 |
| Msa0243710 | Msa1396780 | 0.809964 | 1.458217e-50 | -8.615850e-47 |
| Msa0251050 | Msa1396780 | 0.870506 | 1.385709e-66 | -8.615850e-47 |
| Msa0253340 | Msa1396780 | 0.830662 | 2.588990e-55 | -8.615850e-47 |
| Msa0255550 | Msa1396780 | 0.806744 | 7.089536e-50 | -8.615850e-47 |
| Msa0260810 | Msa1396780 | 0.840334 | 9.259155e-58 | -8.615850e-47 |
| Msa0264780 | Msa1396780 | 0.803401 | 3.547579e-49 | -8.615850e-47 |
| Msa0275660 | Msa1396780 | 0.831255 | 1.851336e-55 | -8.615850e-47 |
| Msa0276920 | Msa1396780 | 0.804256 | 2.357395e-49 | -8.615850e-47 |
| Msa0277420 | Msa1396780 | 0.860584 | 1.865004e-63 | -8.615850e-47 |
| Msa0280570 | Msa1396780 | 0.803802 | 2.929970e-49 | -8.615850e-47 |
| Msa0289950 | Msa1396780 | 0.804787 | 1.826972e-49 | -8.615850e-47 |
| Msa0292170 | Msa1396780 | 0.839776 | 1.293958e-57 | -8.615850e-47 |
| Msa0294590 | Msa1396780 | 0.803477 | 3.421932e-49 | -8.615850e-47 |
| Msa0299890 | Msa1396780 | 0.809919 | 1.491088e-50 | -8.615850e-47 |
| Msa0305700 | Msa1396780 | 0.804905 | 1.725529e-49 | -8.615850e-47 |
| Msa0312530 | Msa1396780 | 0.825811 | 3.823877e-54 | -8.615850e-47 |
| Msa0315150 | Msa1396780 | 0.804088 | 2.554334e-49 | -8.615850e-47 |
| Msa0317270 | Msa1396780 | 0.852167 | 5.511871e-61 | -8.615850e-47 |
| Msa0326520 | Msa1396780 | 0.836220 | 1.063475e-56 | -8.615850e-47 |
| Msa0327750 | Msa1396780 | 0.836488 | 9.084837e-57 | -8.615850e-47 |
| Msa0334040 | Msa1396780 | 0.804657 | 1.944466e-49 | -8.615850e-47 |
| Msa0335040 | Msa1396780 | 0.818239 | 2.174607e-52 | -8.615850e-47 |
| Msa1118760 | Msa1396780 | 0.821516 | 3.873396e-53 | -8.615850e-47 |
| Msa1127770 | Msa1396780 | 0.841049 | 6.014972e-58 | -8.615850e-47 |
| Msa1133220 | Msa1396780 | 0.867185 | 1.648451e-65 | -8.615850e-47 |
| Msa1152950 | Msa1396780 | 0.840219 | 9.919985e-58 | -8.615850e-47 |
| Msa1158660 | Msa1396780 | 0.817439 | 3.295540e-52 | -8.615850e-47 |
| Msa1158830 | Msa1396780 | 0.811917 | 5.508697e-51 | -8.615850e-47 |
| Msa1162550 | Msa1396780 | -0.801302 | 9.601333e-49 | -8.615850e-47 |
| Msa1168590 | Msa1396780 | 0.802466 | 5.537329e-49 | -8.615850e-47 |
| Msa1179940 | Msa1396780 | 0.828378 | 9.297017e-55 | -8.615850e-47 |
| Msa1179970 | Msa1396780 | 0.834238 | 3.364686e-56 | -8.615850e-47 |
| Msa0484780 | Msa1396780 | 0.809494 | 1.840525e-50 | -8.615850e-47 |
| Msa0492880 | Msa1396780 | 0.809190 | 2.138468e-50 | -8.615850e-47 |
| Msa0511250 | Msa1396780 | 0.824545 | 7.616610e-54 | -8.615850e-47 |
| Msa0512870 | Msa1396780 | 0.811679 | 6.205252e-51 | -8.615850e-47 |
| Msa0516370 | Msa1396780 | 0.805155 | 1.529840e-49 | -8.615850e-47 |
| Msa0526940 | Msa1396780 | 0.826416 | 2.745837e-54 | -8.615850e-47 |
| Msa0556010 | Msa1396780 | 0.801369 | 9.303874e-49 | -8.615850e-47 |
| Msa0567020 | Msa1396780 | 0.818537 | 1.860996e-52 | -8.615850e-47 |
| Msa0572420 | Msa1396780 | 0.838693 | 2.471881e-57 | -8.615850e-47 |
| Msa0572480 | Msa1396780 | 0.832220 | 1.070275e-55 | -8.615850e-47 |
| Msa0576680 | Msa1396780 | 0.804693 | 1.910699e-49 | -8.615850e-47 |
| Msa0581690 | Msa1396780 | 0.802506 | 5.432423e-49 | -8.615850e-47 |
| Msa0861450 | Msa1396780 | 0.815267 | 1.009234e-51 | -8.615850e-47 |
| Msa0863800 | Msa1396780 | 0.802239 | 6.165764e-49 | -8.615850e-47 |
| Msa0867890 | Msa1396780 | 0.804427 | 2.171867e-49 | -8.615850e-47 |
| Msa0870530 | Msa1396780 | 0.839567 | 1.466402e-57 | -8.615850e-47 |
| Msa0900620 | Msa1396780 | 0.816322 | 5.870399e-52 | -8.615850e-47 |
| Msa0903700 | Msa1396780 | 0.835223 | 1.901644e-56 | -8.615850e-47 |
| Msa0908050 | Msa1396780 | 0.802570 | 5.268531e-49 | -8.615850e-47 |
| Msa0922410 | Msa1396780 | 0.809867 | 1.530217e-50 | -8.615850e-47 |
| Msa0926370 | Msa1396780 | 0.814531 | 1.469193e-51 | -8.615850e-47 |
| Msa0930780 | Msa1396780 | 0.809144 | 2.187335e-50 | -8.615850e-47 |
| Msa0936210 | Msa1396780 | 0.825162 | 5.449223e-54 | -8.615850e-47 |
| Msa0961300 | Msa1396780 | 0.808829 | 2.555011e-50 | -8.615850e-47 |
| Msa0973150 | Msa1396780 | 0.833799 | 4.334519e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396780 | MtrunA17_Chr1g0190711 | 96.838 | 253 | 6 | 2 | 1 | 251 | 1 | 253 | 0.0 | 498 |
| Msa1396780 | MtrunA17_Chr1g0187921 | 65.289 | 242 | 66 | 5 | 15 | 251 | 8 | 236 | 6.41e-100 | 291 |
| Msa1396780 | MtrunA17_Chr1g0184791 | 65.844 | 243 | 63 | 6 | 17 | 251 | 15 | 245 | 1.24e-97 | 285 |
| Msa1396780 | MtrunA17_Chr7g0260641 | 61.066 | 244 | 84 | 4 | 15 | 251 | 11 | 250 | 1.51e-90 | 267 |
| Msa1396780 | MtrunA17_Chr5g0411501 | 47.917 | 288 | 96 | 9 | 15 | 251 | 51 | 335 | 1.71e-75 | 232 |
| Msa1396780 | MtrunA17_Chr8g0390281 | 48.029 | 279 | 92 | 7 | 15 | 250 | 24 | 292 | 2.11e-74 | 228 |
| Msa1396780 | MtrunA17_Chr6g0486121 | 50.190 | 263 | 80 | 8 | 15 | 250 | 15 | 253 | 2.14e-74 | 226 |
| Msa1396780 | MtrunA17_Chr8g0366881 | 47.552 | 286 | 97 | 8 | 15 | 251 | 67 | 348 | 9.38e-74 | 228 |
| Msa1396780 | MtrunA17_Chr2g0331411 | 45.603 | 307 | 94 | 9 | 13 | 250 | 23 | 325 | 1.06e-71 | 222 |
| Msa1396780 | MtrunA17_Chr5g0428141 | 47.719 | 285 | 97 | 7 | 15 | 250 | 65 | 346 | 2.49e-71 | 222 |
| Msa1396780 | MtrunA17_Chr7g0260621 | 46.753 | 231 | 81 | 7 | 14 | 240 | 10 | 202 | 1.40e-56 | 179 |
| Msa1396780 | MtrunA17_Chr1g0184801 | 47.162 | 229 | 80 | 5 | 15 | 240 | 12 | 202 | 2.56e-55 | 176 |
| Msa1396780 | MtrunA17_Chr1g0166011 | 43.805 | 226 | 84 | 6 | 15 | 240 | 1 | 183 | 4.47e-53 | 170 |
| Msa1396780 | MtrunA17_Chr1g0187961 | 46.222 | 225 | 64 | 8 | 15 | 239 | 11 | 178 | 1.09e-52 | 169 |
| Msa1396780 | MtrunA17_Chr1g0183251 | 43.716 | 183 | 71 | 4 | 96 | 246 | 81 | 263 | 7.17e-37 | 131 |
| Msa1396780 | MtrunA17_Chr4g0004181 | 41.991 | 231 | 68 | 9 | 15 | 243 | 6 | 172 | 2.47e-36 | 127 |
| Msa1396780 | MtrunA17_Chr2g0332141 | 58.252 | 103 | 33 | 3 | 135 | 234 | 8 | 103 | 1.77e-34 | 120 |
| Msa1396780 | MtrunA17_Chr2g0330951 | 36.220 | 254 | 122 | 10 | 21 | 242 | 18 | 263 | 3.85e-33 | 121 |
| Msa1396780 | MtrunA17_Chr8g0340731 | 35.223 | 247 | 126 | 10 | 21 | 235 | 16 | 260 | 7.45e-32 | 118 |
| Msa1396780 | MtrunA17_Chr4g0069561 | 35.915 | 142 | 59 | 5 | 95 | 233 | 69 | 181 | 4.97e-18 | 79.3 |
| Msa1396780 | MtrunA17_Chr3g0137601 | 29.787 | 141 | 80 | 4 | 97 | 236 | 88 | 210 | 5.82e-18 | 79.7 |
| Msa1396780 | MtrunA17_Chr1g0193861 | 39.796 | 98 | 47 | 3 | 135 | 232 | 85 | 170 | 2.26e-15 | 72.0 |
| Msa1396780 | MtrunA17_Chr4g0064131 | 27.815 | 151 | 86 | 3 | 82 | 232 | 78 | 205 | 2.96e-15 | 72.4 |
| Msa1396780 | MtrunA17_Chr7g0270851 | 38.095 | 105 | 45 | 3 | 132 | 232 | 67 | 155 | 3.28e-15 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1396780 | AT3G04730.1 | 66.000 | 250 | 59 | 6 | 14 | 251 | 1 | 236 | 4.63e-103 | 299 |
| Msa1396780 | AT4G14550.1 | 64.706 | 238 | 73 | 4 | 15 | 251 | 1 | 228 | 7.00e-99 | 288 |
| Msa1396780 | AT3G23050.1 | 62.195 | 246 | 78 | 6 | 14 | 251 | 5 | 243 | 2.18e-97 | 285 |
| Msa1396780 | AT4G14550.2 | 63.436 | 227 | 72 | 4 | 15 | 240 | 1 | 217 | 7.31e-91 | 268 |
| Msa1396780 | AT1G04250.1 | 57.741 | 239 | 83 | 6 | 15 | 251 | 7 | 229 | 7.58e-88 | 260 |
| Msa1396780 | AT4G29080.1 | 51.799 | 278 | 93 | 9 | 9 | 250 | 32 | 304 | 1.31e-78 | 239 |
| Msa1396780 | AT4G14550.3 | 60.976 | 205 | 69 | 4 | 15 | 218 | 1 | 195 | 6.99e-76 | 229 |
| Msa1396780 | AT3G23050.2 | 58.216 | 213 | 75 | 5 | 14 | 219 | 5 | 210 | 8.89e-75 | 226 |
| Msa1396780 | AT5G65670.2 | 48.264 | 288 | 101 | 9 | 7 | 251 | 54 | 336 | 9.12e-69 | 215 |
| Msa1396780 | AT2G22670.3 | 45.161 | 279 | 103 | 6 | 15 | 250 | 47 | 318 | 3.15e-67 | 211 |
| Msa1396780 | AT2G22670.1 | 45.161 | 279 | 103 | 6 | 15 | 250 | 47 | 318 | 3.15e-67 | 211 |
| Msa1396780 | AT2G22670.4 | 45.161 | 279 | 103 | 6 | 15 | 250 | 64 | 335 | 3.70e-67 | 211 |
| Msa1396780 | AT5G65670.1 | 47.931 | 290 | 101 | 10 | 7 | 251 | 54 | 338 | 1.11e-66 | 210 |
| Msa1396780 | AT2G22670.5 | 44.444 | 279 | 103 | 7 | 15 | 250 | 47 | 316 | 5.60e-64 | 202 |
| Msa1396780 | AT2G22670.2 | 44.444 | 279 | 103 | 7 | 15 | 250 | 47 | 316 | 5.60e-64 | 202 |
| Msa1396780 | AT1G04240.1 | 47.137 | 227 | 76 | 7 | 14 | 240 | 4 | 186 | 2.99e-60 | 189 |
| Msa1396780 | AT1G04240.2 | 47.137 | 227 | 76 | 7 | 14 | 240 | 104 | 286 | 5.48e-59 | 189 |
| Msa1396780 | AT5G43700.1 | 48.899 | 227 | 62 | 8 | 14 | 240 | 10 | 182 | 4.86e-58 | 183 |
| Msa1396780 | AT4G14550.4 | 57.500 | 160 | 57 | 4 | 15 | 173 | 1 | 150 | 1.28e-47 | 156 |
| Msa1396780 | AT3G23030.1 | 41.453 | 234 | 66 | 5 | 10 | 239 | 4 | 170 | 2.07e-45 | 150 |
| Msa1396780 | AT3G23050.3 | 53.293 | 167 | 64 | 5 | 14 | 173 | 5 | 164 | 2.61e-45 | 150 |
| Msa1396780 | AT3G23030.2 | 41.453 | 234 | 66 | 5 | 10 | 239 | 91 | 257 | 1.40e-44 | 151 |
| Msa1396780 | AT3G15540.1 | 42.739 | 241 | 80 | 10 | 15 | 246 | 6 | 197 | 1.53e-43 | 146 |
| Msa1396780 | AT4G14560.1 | 40.991 | 222 | 67 | 6 | 15 | 236 | 7 | 164 | 1.87e-43 | 145 |
| Msa1396780 | AT2G33310.2 | 43.684 | 190 | 85 | 6 | 73 | 245 | 53 | 237 | 4.27e-39 | 136 |
| Msa1396780 | AT1G15580.1 | 40.724 | 221 | 61 | 7 | 15 | 234 | 8 | 159 | 1.57e-38 | 132 |
| Msa1396780 | AT2G33310.3 | 43.158 | 190 | 85 | 6 | 73 | 245 | 53 | 236 | 1.13e-37 | 132 |
| Msa1396780 | AT2G33310.1 | 43.158 | 190 | 85 | 6 | 73 | 245 | 53 | 236 | 1.13e-37 | 132 |
| Msa1396780 | AT1G04550.2 | 43.085 | 188 | 70 | 6 | 83 | 246 | 56 | 230 | 3.34e-37 | 131 |
| Msa1396780 | AT1G52830.1 | 38.938 | 226 | 92 | 8 | 15 | 240 | 6 | 185 | 1.00e-35 | 126 |
| Msa1396780 | AT3G16500.1 | 36.290 | 248 | 117 | 9 | 8 | 235 | 26 | 252 | 4.61e-35 | 126 |
| Msa1396780 | AT3G16500.2 | 36.290 | 248 | 117 | 9 | 8 | 235 | 26 | 252 | 5.14e-35 | 126 |
| Msa1396780 | AT4G28640.1 | 45.283 | 159 | 70 | 5 | 96 | 240 | 87 | 242 | 6.12e-33 | 120 |
| Msa1396780 | AT4G28640.3 | 45.223 | 157 | 69 | 5 | 96 | 238 | 87 | 240 | 1.06e-32 | 120 |
| Msa1396780 | AT4G28640.2 | 45.513 | 156 | 68 | 5 | 97 | 238 | 88 | 240 | 9.79e-32 | 119 |
| Msa1396780 | AT1G51950.1 | 36.000 | 250 | 107 | 9 | 10 | 235 | 30 | 250 | 3.79e-31 | 116 |
| Msa1396780 | AT5G25890.1 | 36.842 | 190 | 93 | 5 | 54 | 242 | 7 | 170 | 1.35e-27 | 104 |
| Msa1396780 | AT1G04100.1 | 36.842 | 247 | 122 | 8 | 24 | 239 | 16 | 259 | 8.64e-27 | 104 |
| Msa1396780 | AT3G17600.1 | 34.848 | 132 | 61 | 3 | 101 | 232 | 48 | 154 | 8.47e-22 | 89.0 |
| Msa1396780 | AT2G46990.1 | 39.583 | 96 | 45 | 1 | 135 | 230 | 86 | 168 | 1.12e-16 | 75.9 |
| Msa1396780 | AT3G62100.1 | 38.776 | 98 | 47 | 1 | 135 | 232 | 84 | 168 | 1.49e-16 | 75.5 |
| Msa1396780 | AT4G32280.1 | 27.684 | 177 | 81 | 4 | 85 | 232 | 82 | 240 | 5.36e-16 | 75.5 |
| Msa1396780 | AT4G32280.2 | 35.714 | 98 | 45 | 2 | 135 | 232 | 119 | 198 | 9.18e-16 | 73.9 |
| Msa1396780 | AT1G80390.1 | 33.553 | 152 | 55 | 4 | 20 | 171 | 19 | 124 | 3.71e-13 | 65.1 |
| Msa1396780 | AT2G46990.2 | 38.824 | 85 | 39 | 1 | 135 | 219 | 86 | 157 | 5.80e-12 | 62.4 |
| Msa1396780 | AT3G62100.2 | 37.647 | 85 | 40 | 1 | 135 | 219 | 84 | 155 | 1.71e-11 | 61.2 |
Find 122 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTAACTCTTGTACAATTTA+AGG | 0.136546 | tig0022086:-36668 | None:intergenic |
| AGATTTGATCAACTAGATTT+TGG | 0.213012 | tig0022086:-33317 | None:intergenic |
| TGGCTTTGGATGTTCATATA+TGG | 0.227683 | tig0022086:-33297 | None:intergenic |
| GCAAGATCCTTTGTAGTATT+AGG | 0.256993 | tig0022086:+37794 | Msa1396780:three_prime_UTR |
| TATATTTGGTGAAGGGGTTA+TGG | 0.280748 | tig0022086:-33599 | None:intergenic |
| GATGAAGCAGAATCATTTAT+AGG | 0.292641 | tig0022086:-33939 | None:intergenic |
| CTCGAGCCAACTTGCTTCCT+TGG | 0.317287 | tig0022086:-37386 | None:intergenic |
| AAATTAGGTGGAAATTCATT+AGG | 0.319576 | tig0022086:+37523 | Msa1396780:three_prime_UTR |
| ATGTTTCCAGTTATCATTGC+TGG | 0.325654 | tig0022086:+37657 | Msa1396780:three_prime_UTR |
| TCATAAAGTCCTTGGTAACT+TGG | 0.357262 | tig0022086:-36752 | None:intergenic |
| TGCTTGTTGGTGATGTTCCT+TGG | 0.360170 | tig0022086:+36850 | Msa1396780:CDS |
| ATATTTGGTGAAGGGGTTAT+GGG | 0.360734 | tig0022086:-33598 | None:intergenic |
| ATACCATGTGCTTGTTGTTA+CGG | 0.369275 | tig0022086:+37908 | Msa1396780:three_prime_UTR |
| GGCTTTGGATGTTCATATAT+GGG | 0.373682 | tig0022086:-33296 | None:intergenic |
| TTCTTTCTAAAGGATCTAAC+TGG | 0.382249 | tig0022086:-36525 | None:intergenic |
| GAGTTACGACTCGGTCTTCC+AGG | 0.382644 | tig0022086:+33822 | Msa1396780:CDS |
| TTATATATGAATGAGAAATT+AGG | 0.392785 | tig0022086:+37508 | Msa1396780:three_prime_UTR |
| ATTTACTATGTTCTTTCTAA+AGG | 0.395708 | tig0022086:-36535 | None:intergenic |
| CTTGTTGTTACGGCCTTCAA+TGG | 0.396997 | tig0022086:+37918 | Msa1396780:three_prime_UTR |
| TCGAGCCAACTTGCTTCCTT+GGG | 0.403910 | tig0022086:-37385 | None:intergenic |
| AAGGAAAAGGCAGGCAAGTA+GGG | 0.404980 | tig0022086:+33430 | Msa1396780:five_prime_UTR |
| ACAAATCCAGCAATGATAAC+TGG | 0.406835 | tig0022086:-37663 | None:intergenic |
| TTTGGTGATATATTTGGTGA+AGG | 0.407964 | tig0022086:-33607 | None:intergenic |
| AATCACAAAATAAGAATAAG+AGG | 0.408703 | tig0022086:-37970 | None:intergenic |
| TTGGTGATATATTTGGTGAA+GGG | 0.409957 | tig0022086:-33606 | None:intergenic |
| GTGCGTTTAGAAGATGGTTT+TGG | 0.410984 | tig0022086:-33625 | None:intergenic |
| AGGTCCACCTTACGTAGATA+TGG | 0.411796 | tig0022086:-36648 | None:intergenic |
| CTTGTCTGTCAAGTTGTAAA+TGG | 0.415347 | tig0022086:+37833 | Msa1396780:three_prime_UTR |
| ATGAAAGGTTCCGAGGCAAT+TGG | 0.416704 | tig0022086:+37161 | Msa1396780:CDS |
| CCTTCACAATTGACAATTGT+GGG | 0.417767 | tig0022086:+36727 | Msa1396780:CDS |
| GCTTGTTGGTGATGTTCCTT+GGG | 0.420684 | tig0022086:+36851 | Msa1396780:CDS |
| CAATAAATATGATACGTATA+AGG | 0.420782 | tig0022086:-37742 | None:intergenic |
| GGATTATAAGGGGATTTGTC+GGG | 0.422567 | tig0022086:-33527 | None:intergenic |
| AAGAGAAAATGACTAACGTT+GGG | 0.423757 | tig0022086:+33754 | Msa1396780:exon |
| AAAGGCAGGCAAGTAGGGGC+AGG | 0.426754 | tig0022086:+33435 | Msa1396780:five_prime_UTR |
| TGGATTATAAGGGGATTTGT+CGG | 0.427263 | tig0022086:-33528 | None:intergenic |
| GTATGGGTCCACCATGTTCA+TGG | 0.428942 | tig0022086:-37889 | None:intergenic |
| CACCATGTTCATGGATCTAA+AGG | 0.433435 | tig0022086:-37880 | None:intergenic |
| GCTTTCATTCATAAAGTCCT+TGG | 0.434299 | tig0022086:-36760 | None:intergenic |
| AATTAGGTGGAAATTCATTA+GGG | 0.434858 | tig0022086:+37524 | Msa1396780:three_prime_UTR |
| AGTAAGGTCGAGGCTAATAT+AGG | 0.437617 | tig0022086:+37407 | Msa1396780:three_prime_UTR |
| TTGTAGTGGACATACTAGTT+TGG | 0.446414 | tig0022086:-33459 | None:intergenic |
| GCACATACTCTGTCACGTAT+TGG | 0.454043 | tig0022086:-37708 | None:intergenic |
| AGCACAAGTGGTGGTGGGAA+TGG | 0.463834 | tig0022086:+36594 | Msa1396780:CDS |
| TGGAGATGTTGACACGTGTA+TGG | 0.465271 | tig0022086:-33562 | None:intergenic |
| AAAGGAAAAGGCAGGCAAGT+AGG | 0.470110 | tig0022086:+33429 | Msa1396780:five_prime_UTR |
| CCAGCGCATCTGACAGCTCT+TGG | 0.472063 | tig0022086:-36689 | None:intergenic |
| TGAAAGGTTCCGAGGCAATT+GGG | 0.476415 | tig0022086:+37162 | Msa1396780:CDS |
| AATTTGTAGGGCACAAGTTG+TGG | 0.477874 | tig0022086:+36494 | Msa1396780:intron |
| CATAATCAGAACCGTTCAAA+AGG | 0.478352 | tig0022086:-36794 | None:intergenic |
| CCATCTTTGTCTTCATATGT+TGG | 0.478384 | tig0022086:-36819 | None:intergenic |
| CCAAGAGCTGTCAGATGCGC+TGG | 0.479602 | tig0022086:+36689 | Msa1396780:CDS |
| GATAAGAGCACAAGTGGTGG+TGG | 0.485348 | tig0022086:+36588 | Msa1396780:CDS |
| GAAGCAAGTTGGCTCGAGTA+AGG | 0.490808 | tig0022086:+37391 | Msa1396780:three_prime_UTR |
| TGTTAATTGGTGGGTAGCAA+AGG | 0.491610 | tig0022086:+33411 | Msa1396780:five_prime_UTR |
| TCCTTCACAATTGACAATTG+TGG | 0.492530 | tig0022086:+36726 | Msa1396780:CDS |
| ATGAAGACAAAGATGGTGAT+TGG | 0.495668 | tig0022086:+36826 | Msa1396780:CDS |
| TCATTCCCACCAAATAAGAT+TGG | 0.505558 | tig0022086:+33376 | Msa1396780:five_prime_UTR |
| TTTAGACCAATCTTATTTGG+TGG | 0.506070 | tig0022086:-33382 | None:intergenic |
| TTGTTACGGCCTTCAATGGA+GGG | 0.514258 | tig0022086:+37922 | Msa1396780:three_prime_UTR |
| ATTTGGTGAAGGGGTTATGG+GGG | 0.518976 | tig0022086:-33596 | None:intergenic |
| TGTCAACATCTCCATCCATA+TGG | 0.521501 | tig0022086:+33571 | Msa1396780:five_prime_UTR |
| TTAGACCAATCTTATTTGGT+GGG | 0.521671 | tig0022086:-33381 | None:intergenic |
| GATGGTGATTGGATGCTTGT+TGG | 0.521825 | tig0022086:+36837 | Msa1396780:CDS |
| GGTTCCGAGGCAATTGGGCT+AGG | 0.522558 | tig0022086:+37167 | Msa1396780:CDS |
| GTAACAACAAGCACATGGTA+TGG | 0.524061 | tig0022086:-37906 | None:intergenic |
| GTTGTTACGGCCTTCAATGG+AGG | 0.529108 | tig0022086:+37921 | Msa1396780:three_prime_UTR |
| TGGTGATATATTTGGTGAAG+GGG | 0.529685 | tig0022086:-33605 | None:intergenic |
| CATAAAGTCCTTGGTAACTT+GGG | 0.531177 | tig0022086:-36751 | None:intergenic |
| TCTCCGTGATCACCTGCACC+TGG | 0.533867 | tig0022086:-33840 | None:intergenic |
| GTAGTGGATCCCTCCATTGA+AGG | 0.539963 | tig0022086:-37931 | None:intergenic |
| TTTACCTAGCCCAATTGCCT+CGG | 0.542690 | tig0022086:-37171 | None:intergenic |
| GCAGATTTATCAACCAGAAG+TGG | 0.545785 | tig0022086:-37360 | None:intergenic |
| TGGAAGACCGAGTCGTAACT+CGG | 0.546250 | tig0022086:-33820 | None:intergenic |
| TGGGAATGGAGCATTTGTTA+AGG | 0.549372 | tig0022086:+36608 | Msa1396780:CDS |
| ATTTGTAGGGCACAAGTTGT+GGG | 0.551340 | tig0022086:+36495 | Msa1396780:intron |
| CTTCCAGGTGCAGGTGATCA+CGG | 0.551547 | tig0022086:+33837 | Msa1396780:CDS |
| CGACTCGGTCTTCCAGGTGC+AGG | 0.557067 | tig0022086:+33828 | Msa1396780:CDS |
| TATATGAATGAGAAATTAGG+TGG | 0.560071 | tig0022086:+37511 | Msa1396780:three_prime_UTR |
| AAAGAGAAAATGACTAACGT+TGG | 0.560324 | tig0022086:+33753 | Msa1396780:exon |
| ACTCACTTAGCACGAGGAGG+AGG | 0.560950 | tig0022086:-34029 | None:intergenic |
| GGGGATTTGTCGGGAAAATG+AGG | 0.562737 | tig0022086:-33518 | None:intergenic |
| TTGTCGGGAAAATGAGGTCA+TGG | 0.565268 | tig0022086:-33512 | None:intergenic |
| TGTAATAATAAGAATGATTG+TGG | 0.565492 | tig0022086:-33485 | None:intergenic |
| TTTGATGGTTGGATTATAAG+GGG | 0.568755 | tig0022086:-33537 | None:intergenic |
| TTTGTTAAGGTGAGCATGGA+TGG | 0.571730 | tig0022086:+36621 | Msa1396780:CDS |
| TTGGTGGGTAGCAAAGGAAA+AGG | 0.578838 | tig0022086:+33417 | Msa1396780:five_prime_UTR |
| GAAGCAGATAAGAGCACAAG+TGG | 0.581742 | tig0022086:+36582 | Msa1396780:CDS |
| TAACAACAAGCACATGGTAT+GGG | 0.581887 | tig0022086:-37905 | None:intergenic |
| TAAATGGAGCTGATTTGTTG+AGG | 0.589212 | tig0022086:+37849 | Msa1396780:three_prime_UTR |
| CCAACATATGAAGACAAAGA+TGG | 0.591098 | tig0022086:+36819 | Msa1396780:CDS |
| GGAGATGTTGACACGTGTAT+GGG | 0.591297 | tig0022086:-33561 | None:intergenic |
| AGGAAAAGGCAGGCAAGTAG+GGG | 0.592809 | tig0022086:+33431 | Msa1396780:five_prime_UTR |
| AAATATGATACGTATAAGGT+AGG | 0.598381 | tig0022086:-37738 | None:intergenic |
| GTAGGGCACAAGTTGTGGGA+TGG | 0.599917 | tig0022086:+36499 | Msa1396780:intron |
| TGCATCCCAAGGAAGCAAGT+TGG | 0.600502 | tig0022086:+37380 | Msa1396780:three_prime_UTR |
| TATTTGGTGAAGGGGTTATG+GGG | 0.602160 | tig0022086:-33597 | None:intergenic |
| AGCATTTGTTAAGGTGAGCA+TGG | 0.602441 | tig0022086:+36617 | Msa1396780:CDS |
| TGGGTAGCAAAGGAAAAGGC+AGG | 0.603737 | tig0022086:+33421 | Msa1396780:five_prime_UTR |
| CCCACAATTGTCAATTGTGA+AGG | 0.603780 | tig0022086:-36727 | None:intergenic |
| AGTTGGCTCGAGTAAGGTCG+AGG | 0.607074 | tig0022086:+37397 | Msa1396780:three_prime_UTR |
| TGGTGCACCATATCTACGTA+AGG | 0.613344 | tig0022086:+36641 | Msa1396780:CDS |
| GAACATATGAAATAAAGTAG+TGG | 0.616500 | tig0022086:-37947 | None:intergenic |
| TTTCTAAAGGATCTAACTGG+TGG | 0.617257 | tig0022086:-36522 | None:intergenic |
| GCAGATAAGAGCACAAGTGG+TGG | 0.620410 | tig0022086:+36585 | Msa1396780:CDS |
| AAGCGTCTTCGCATAATGAA+AGG | 0.624465 | tig0022086:+37146 | Msa1396780:CDS |
| ATCACAAAATAAGAATAAGA+GGG | 0.625000 | tig0022086:-37969 | None:intergenic |
| TGTACTACCTAATACTACAA+AGG | 0.625632 | tig0022086:-37801 | None:intergenic |
| GCTTCTGTAGCTGAAAACAA+AGG | 0.627006 | tig0022086:+33975 | Msa1396780:CDS |
| ATAAGAGCACAAGTGGTGGT+GGG | 0.631680 | tig0022086:+36589 | Msa1396780:CDS |
| GTTGATAAATCTGCATCCCA+AGG | 0.636946 | tig0022086:+37369 | Msa1396780:three_prime_UTR |
| GAGGAGACCGAGTTACGACT+CGG | 0.639589 | tig0022086:+33813 | Msa1396780:CDS |
| AAGAGGGGTACTCACTCCCA+AGG | 0.643207 | tig0022086:-36867 | None:intergenic |
| ATTATAAGTCAAGCACACGC+TGG | 0.650658 | tig0022086:-37627 | None:intergenic |
| AGAGAAAATGACTAACGTTG+GGG | 0.660146 | tig0022086:+33755 | Msa1396780:exon |
| TTGTGGGTCCCAAGTTACCA+AGG | 0.660834 | tig0022086:+36743 | Msa1396780:CDS |
| TCGCATAATGAAAGGTTCCG+AGG | 0.668062 | tig0022086:+37154 | Msa1396780:CDS |
| TGCACCATATCTACGTAAGG+TGG | 0.669757 | tig0022086:+36644 | Msa1396780:CDS |
| TGCCTTTAGATCCATGAACA+TGG | 0.675466 | tig0022086:+37878 | Msa1396780:three_prime_UTR |
| AGGCCGTAACAACAAGCACA+TGG | 0.695694 | tig0022086:-37911 | None:intergenic |
| AAAACTCACTTAGCACGAGG+AGG | 0.704960 | tig0022086:-34032 | None:intergenic |
| CTTTAGATCCATGAACATGG+TGG | 0.719280 | tig0022086:+37881 | Msa1396780:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTAGATTTTTTTTTTTA+AGG | + | tig0022086:34367-34386 | Msa1396780:intron | 10.0% |
| !!! | GATTAGATTTTTTTTTTTAA+GGG | + | tig0022086:34368-34387 | Msa1396780:intron | 10.0% |
| !!! | ATTTTGAATAAGTTTTAATT+AGG | + | tig0022086:34441-34460 | Msa1396780:intron | 10.0% |
| !!! | CTTATAAAAATGTTTTAATT+AGG | + | tig0022086:34467-34486 | Msa1396780:intron | 10.0% |
| !!! | AATTTTATTCAAAAAATTTG+AGG | - | tig0022086:35106-35125 | None:intergenic | 10.0% |
| !!! | AATTTTTAAAAGAATAAACA+TGG | + | tig0022086:35259-35278 | Msa1396780:intron | 10.0% |
| !!! | AATAATAGTATTATTTTAGT+TGG | + | tig0022086:35429-35448 | Msa1396780:intron | 10.0% |
| !!! | AATTTATTTTTTTTAAGATG+GGG | + | tig0022086:36282-36301 | Msa1396780:intron | 10.0% |
| !!! | TCTTTTTCTTTTTCTTTTTT+TGG | - | tig0022086:33697-33716 | None:intergenic | 15.0% |
| !! | TGAATAATTAAGTTATATCT+AGG | + | tig0022086:34172-34191 | Msa1396780:intron | 15.0% |
| !! | ATATTATTGTTTAACAAAAC+AGG | - | tig0022086:34864-34883 | None:intergenic | 15.0% |
| !!! | AAGTTTAATGTTAGTTTTTA+TGG | - | tig0022086:34915-34934 | None:intergenic | 15.0% |
| !! | ATTAAAATTCATGTCAAAAT+AGG | - | tig0022086:35132-35151 | None:intergenic | 15.0% |
| !!! | TGTAATAAAATTGATTTTGA+AGG | - | tig0022086:35200-35219 | None:intergenic | 15.0% |
| !! | AATTAACAATATTATATGAG+TGG | - | tig0022086:35538-35557 | None:intergenic | 15.0% |
| !!! | ATTTTAGTTTATTTTGATGA+CGG | - | tig0022086:35883-35902 | None:intergenic | 15.0% |
| !! | TAGAATTTGCATAATTAATT+TGG | - | tig0022086:36251-36270 | None:intergenic | 15.0% |
| !! | AAATTAATTATGCAAATTCT+AGG | + | tig0022086:36250-36269 | Msa1396780:intron | 15.0% |
| !! | AATTAATTATGCAAATTCTA+GGG | + | tig0022086:36251-36270 | Msa1396780:intron | 15.0% |
| !! | TTAATGAATATTGAATTTGT+AGG | + | tig0022086:36481-36500 | Msa1396780:intron | 15.0% |
| !! | TAATGAATATTGAATTTGTA+GGG | + | tig0022086:36482-36501 | Msa1396780:intron | 15.0% |
| !!! | ACGATGTAATAAATTTTTAT+TGG | - | tig0022086:37004-37023 | None:intergenic | 15.0% |
| !! | TCAAATGTATTTAACAAATT+AGG | + | tig0022086:37220-37239 | Msa1396780:intron | 15.0% |
| !! | TTATATATGAATGAGAAATT+AGG | + | tig0022086:37508-37527 | Msa1396780:three_prime_UTR | 15.0% |
| !! | TTGGACAAAATAAAAATAAT+GGG | - | tig0022086:37692-37711 | None:intergenic | 15.0% |
| !! | ATTGGACAAAATAAAAATAA+TGG | - | tig0022086:37693-37712 | None:intergenic | 15.0% |
| !! | GTCTAAAAAGAATTGTTAAT+TGG | + | tig0022086:33398-33417 | Msa1396780:five_prime_UTR | 20.0% |
| !! | TAAAAAGAATTGTTAATTGG+TGG | + | tig0022086:33401-33420 | Msa1396780:five_prime_UTR | 20.0% |
| !! | AAAAAGAATTGTTAATTGGT+GGG | + | tig0022086:33402-33421 | Msa1396780:five_prime_UTR | 20.0% |
| !! | TGTAATAATAAGAATGATTG+TGG | - | tig0022086:33488-33507 | None:intergenic | 20.0% |
| !! | TCATAGAGTATAGATAATTA+AGG | + | tig0022086:34299-34318 | Msa1396780:intron | 20.0% |
| !!! | ATCTAATCTTTTCAATTCAA+TGG | - | tig0022086:34356-34375 | None:intergenic | 20.0% |
| !!! | AATGTTTTAATTAGGTTAGA+AGG | + | tig0022086:34475-34494 | Msa1396780:intron | 20.0% |
| !!! | TTTTTTGAACATGACAATTT+TGG | + | tig0022086:34585-34604 | Msa1396780:intron | 20.0% |
| !! | ATTTGTTTGTGAAAAACTAT+TGG | + | tig0022086:34641-34660 | Msa1396780:intron | 20.0% |
| !!! | AAAAATAAAGTATTGGATAG+TGG | + | tig0022086:35381-35400 | Msa1396780:intron | 20.0% |
| !!! | AAAATAAAGTATTGGATAGT+GGG | + | tig0022086:35382-35401 | Msa1396780:intron | 20.0% |
| !!! | TTTATTTATCCTTTTGTTTG+GGG | - | tig0022086:35561-35580 | None:intergenic | 20.0% |
| !!! | CTTTATTTATCCTTTTGTTT+GGG | - | tig0022086:35562-35581 | None:intergenic | 20.0% |
| !!! | ACTTTATTTATCCTTTTGTT+TGG | - | tig0022086:35563-35582 | None:intergenic | 20.0% |
| !! | AAGGATAAATAAAGTTGAAA+AGG | + | tig0022086:35568-35587 | Msa1396780:intron | 20.0% |
| !! | GTAATTTATGCATGAATTAT+TGG | - | tig0022086:35652-35671 | None:intergenic | 20.0% |
| !! | CATAAATTACTGTAGTATAA+AGG | + | tig0022086:35662-35681 | Msa1396780:intron | 20.0% |
| !! | ATTTGTGTTTAATTGGAAAT+TGG | + | tig0022086:35693-35712 | Msa1396780:intron | 20.0% |
| !! | ATCTGTTTAATAAGATTAGT+TGG | + | tig0022086:36433-36452 | Msa1396780:intron | 20.0% |
| !! | ATTTACTATGTTCTTTCTAA+AGG | - | tig0022086:36538-36557 | None:intergenic | 20.0% |
| !! | AAATTAAACAATGTAATGTG+AGG | - | tig0022086:36900-36919 | None:intergenic | 20.0% |
| !! | TGGACAAAATAAAAATAATG+GGG | - | tig0022086:37691-37710 | None:intergenic | 20.0% |
| !! | CAATAAATATGATACGTATA+AGG | - | tig0022086:37745-37764 | None:intergenic | 20.0% |
| !! | ATCACAAAATAAGAATAAGA+GGG | - | tig0022086:37972-37991 | None:intergenic | 20.0% |
| !! | AATCACAAAATAAGAATAAG+AGG | - | tig0022086:37973-37992 | None:intergenic | 20.0% |
| !! | AGATTTGATCAACTAGATTT+TGG | - | tig0022086:33320-33339 | None:intergenic | 25.0% |
| !! | CTTTTTAGACCAATCTTATT+TGG | - | tig0022086:33388-33407 | None:intergenic | 25.0% |
| !!! | TTTTGATGGTTGGATTATAA+GGG | - | tig0022086:33541-33560 | None:intergenic | 25.0% |
| ! | TTATCTATACTCTATGAACA+AGG | - | tig0022086:34296-34315 | None:intergenic | 25.0% |
| !! | GTTTCTTGTTCCATAATTTT+TGG | + | tig0022086:34533-34552 | Msa1396780:intron | 25.0% |
| !! | ATAATCTGGATGACATTTTT+AGG | - | tig0022086:35331-35350 | None:intergenic | 25.0% |
| !! | AATTTTTCTTGCACATAATC+TGG | - | tig0022086:35345-35364 | None:intergenic | 25.0% |
| !!! | TTTTAGTTGGATTTTTTCTG+CGG | + | tig0022086:35442-35461 | Msa1396780:intron | 25.0% |
| ! | TGTTAAATTGAGAAACAAGA+TGG | - | tig0022086:36129-36148 | None:intergenic | 25.0% |
| ! | TGAACAAGAATGATTGAAAT+TGG | + | tig0022086:36157-36176 | Msa1396780:intron | 25.0% |
| !!! | TTATTTTTTTTAAGATGGGG+TGG | + | tig0022086:36285-36304 | Msa1396780:intron | 25.0% |
| !! | AAATTGATTGACCTTTTGAA+CGG | + | tig0022086:36783-36802 | Msa1396780:CDS | 25.0% |
| !! | AAATTAGGTTTAGAACCATA+TGG | + | tig0022086:37235-37254 | Msa1396780:intron | 25.0% |
| ! | ATAAGATAAGATGTACCATA+TGG | - | tig0022086:37253-37272 | None:intergenic | 25.0% |
| ! | TATATGAATGAGAAATTAGG+TGG | + | tig0022086:37511-37530 | Msa1396780:three_prime_UTR | 25.0% |
| ! | AAATTAGGTGGAAATTCATT+AGG | + | tig0022086:37523-37542 | Msa1396780:three_prime_UTR | 25.0% |
| ! | AATTAGGTGGAAATTCATTA+GGG | + | tig0022086:37524-37543 | Msa1396780:three_prime_UTR | 25.0% |
| !!! | ACCCAGTTTTTGTTATTATA+AGG | + | tig0022086:37577-37596 | Msa1396780:three_prime_UTR | 25.0% |
| ! | CCCTTATAATAACAAAAACT+GGG | - | tig0022086:37581-37600 | None:intergenic | 25.0% |
| !!! | CCCAGTTTTTGTTATTATAA+GGG | + | tig0022086:37578-37597 | Msa1396780:three_prime_UTR | 25.0% |
| !!! | CCAGTTTTTGTTATTATAAG+GGG | + | tig0022086:37579-37598 | Msa1396780:three_prime_UTR | 25.0% |
| !! | GACAAAATAAAAATAATGGG+GGG | - | tig0022086:37689-37708 | None:intergenic | 25.0% |
| ! | GGACAAAATAAAAATAATGG+GGG | - | tig0022086:37690-37709 | None:intergenic | 25.0% |
| ! | AAATATGATACGTATAAGGT+AGG | - | tig0022086:37741-37760 | None:intergenic | 25.0% |
| ! | GAACATATGAAATAAAGTAG+TGG | - | tig0022086:37950-37969 | None:intergenic | 25.0% |
| ! | TTAGACCAATCTTATTTGGT+GGG | - | tig0022086:33384-33403 | None:intergenic | 30.0% |
| ! | TTTAGACCAATCTTATTTGG+TGG | - | tig0022086:33385-33404 | None:intergenic | 30.0% |
| ! | AATGATTGTGGTTTTTGTAG+TGG | - | tig0022086:33476-33495 | None:intergenic | 30.0% |
| ! | TTTGATGGTTGGATTATAAG+GGG | - | tig0022086:33540-33559 | None:intergenic | 30.0% |
| !! | GTTTTGATGGTTGGATTATA+AGG | - | tig0022086:33542-33561 | None:intergenic | 30.0% |
| ! | TTGGTGATATATTTGGTGAA+GGG | - | tig0022086:33609-33628 | None:intergenic | 30.0% |
| ! | TTTGGTGATATATTTGGTGA+AGG | - | tig0022086:33610-33629 | None:intergenic | 30.0% |
| !!! | GATGGTTTTGGTGATATATT+TGG | - | tig0022086:33616-33635 | None:intergenic | 30.0% |
| !!! | TTTTTTGTGCGTTTAGAAGA+TGG | - | tig0022086:33634-33653 | None:intergenic | 30.0% |
| AAAGAGAAAATGACTAACGT+TGG | + | tig0022086:33753-33772 | Msa1396780:exon | 30.0% | |
| AAGAGAAAATGACTAACGTT+GGG | + | tig0022086:33754-33773 | Msa1396780:exon | 30.0% | |
| ! | GTACAGCTTGATAAATTTTG+AGG | + | tig0022086:33794-33813 | Msa1396780:CDS | 30.0% |
| TCACCTGTTAAAAATAGTTG+CGG | + | tig0022086:33864-33883 | Msa1396780:CDS | 30.0% | |
| !!! | TTTCCGCAACTATTTTTAAC+AGG | - | tig0022086:33870-33889 | None:intergenic | 30.0% |
| GATGAAGCAGAATCATTTAT+AGG | - | tig0022086:33942-33961 | None:intergenic | 30.0% | |
| GTTTGTGATTAAAGATCACA+CGG | + | tig0022086:34500-34519 | Msa1396780:intron | 30.0% | |
| GCAAATTCAGCCAAAAATTA+TGG | - | tig0022086:34546-34565 | None:intergenic | 30.0% | |
| ! | TTTGAACATGACAATTTTGG+TGG | + | tig0022086:34588-34607 | Msa1396780:intron | 30.0% |
| ! | ATTGGCAATTTGAGTTTGAT+TGG | + | tig0022086:34659-34678 | Msa1396780:intron | 30.0% |
| AAAGAAAAAGACAAGACACT+TGG | + | tig0022086:35492-35511 | Msa1396780:intron | 30.0% | |
| TTGTTAATTCCCCAAACAAA+AGG | + | tig0022086:35549-35568 | Msa1396780:intron | 30.0% | |
| CCAATTAAACACAAATTCTC+TGG | - | tig0022086:35689-35708 | None:intergenic | 30.0% | |
| CCAGAGAATTTGTGTTTAAT+TGG | + | tig0022086:35686-35705 | Msa1396780:intron | 30.0% | |
| CATCAACTATCTTAATCAGA+TGG | - | tig0022086:35769-35788 | None:intergenic | 30.0% | |
| ! | ATTGATGATTTCAAGTCACT+CGG | - | tig0022086:36029-36048 | None:intergenic | 30.0% |
| !! | CATGTCGGTTTATATTGAAA+GGG | - | tig0022086:36084-36103 | None:intergenic | 30.0% |
| AATATAAACCGACATGCTAT+CGG | + | tig0022086:36088-36107 | Msa1396780:intron | 30.0% | |
| AGAATGATTGAAATTGGCAA+AGG | + | tig0022086:36163-36182 | Msa1396780:intron | 30.0% | |
| AGTGTACTAGACAAGAAAAA+TGG | + | tig0022086:36197-36216 | Msa1396780:intron | 30.0% | |
| GTGTACTAGACAAGAAAAAT+GGG | + | tig0022086:36198-36217 | Msa1396780:intron | 30.0% | |
| TGCATTCATGTAATCGATAT+TGG | + | tig0022086:36373-36392 | Msa1396780:intron | 30.0% | |
| ! | TTCTTTCTAAAGGATCTAAC+TGG | - | tig0022086:36528-36547 | None:intergenic | 30.0% |
| GGTAACTCTTGTACAATTTA+AGG | - | tig0022086:36671-36690 | None:intergenic | 30.0% | |
| AATGTGAGGTGAAAAAAAGA+GGG | - | tig0022086:36886-36905 | None:intergenic | 30.0% | |
| TAATGTGAGGTGAAAAAAAG+AGG | - | tig0022086:36887-36906 | None:intergenic | 30.0% | |
| ! | TAATCTGATGATGAATGGAT+TGG | - | tig0022086:36965-36984 | None:intergenic | 30.0% |
| ! | ATGATCAAAGTGTTATGAGT+TGG | - | tig0022086:37061-37080 | None:intergenic | 30.0% |
| CCCCTTATAATAACAAAAAC+TGG | - | tig0022086:37582-37601 | None:intergenic | 30.0% | |
| TGTACTACCTAATACTACAA+AGG | - | tig0022086:37804-37823 | None:intergenic | 30.0% | |
| !! | GGCTTTGGATGTTCATATAT+GGG | - | tig0022086:33299-33318 | None:intergenic | 35.0% |
| !! | TGGCTTTGGATGTTCATATA+TGG | - | tig0022086:33300-33319 | None:intergenic | 35.0% |
| !!! | GATCAACTAGATTTTGGCTT+TGG | - | tig0022086:33314-33333 | None:intergenic | 35.0% |
| TCATTCCCACCAAATAAGAT+TGG | + | tig0022086:33376-33395 | Msa1396780:five_prime_UTR | 35.0% | |
| !! | TTGTAGTGGACATACTAGTT+TGG | - | tig0022086:33462-33481 | None:intergenic | 35.0% |
| TGGATTATAAGGGGATTTGT+CGG | - | tig0022086:33531-33550 | None:intergenic | 35.0% | |
| ! | ATATTTGGTGAAGGGGTTAT+GGG | - | tig0022086:33601-33620 | None:intergenic | 35.0% |
| ! | TATATTTGGTGAAGGGGTTA+TGG | - | tig0022086:33602-33621 | None:intergenic | 35.0% |
| ! | TGGTGATATATTTGGTGAAG+GGG | - | tig0022086:33608-33627 | None:intergenic | 35.0% |
| AGAGAAAATGACTAACGTTG+GGG | + | tig0022086:33755-33774 | Msa1396780:exon | 35.0% | |
| AAAAATAGTTGCGGAAAGAG+AGG | + | tig0022086:33873-33892 | Msa1396780:CDS | 35.0% | |
| !!! | GTTTTGTTTGAGACTGAGAT+AGG | + | tig0022086:34194-34213 | Msa1396780:intron | 35.0% |
| ATTTGTGTGCAACACTATTG+AGG | + | tig0022086:34236-34255 | Msa1396780:intron | 35.0% | |
| TTTGTGTGCAACACTATTGA+GGG | + | tig0022086:34237-34256 | Msa1396780:intron | 35.0% | |
| AGGGGAATCTTATTAGAAAG+AGG | + | tig0022086:34256-34275 | Msa1396780:intron | 35.0% | |
| AAGATCACACGGTTACAATT+AGG | + | tig0022086:34511-34530 | Msa1396780:intron | 35.0% | |
| GAATAAACATGGACAACGTA+TGG | + | tig0022086:35270-35289 | Msa1396780:intron | 35.0% | |
| ACAACGTATGGTAATCAATC+AGG | + | tig0022086:35282-35301 | Msa1396780:intron | 35.0% | |
| CAACGTATGGTAATCAATCA+GGG | + | tig0022086:35283-35302 | Msa1396780:intron | 35.0% | |
| TGAGACTGTAACAATGTGAT+AGG | - | tig0022086:35627-35646 | None:intergenic | 35.0% | |
| CTAATGACGATAGAGAATCA+TGG | + | tig0022086:35823-35842 | Msa1396780:intron | 35.0% | |
| GGAGCCAGACAAAAAAATTT+GGG | + | tig0022086:35853-35872 | Msa1396780:intron | 35.0% | |
| GAGCCAGACAAAAAAATTTG+GGG | + | tig0022086:35854-35873 | Msa1396780:intron | 35.0% | |
| !! | GCATGTCGGTTTATATTGAA+AGG | - | tig0022086:36085-36104 | None:intergenic | 35.0% |
| ! | TTTCTAAAGGATCTAACTGG+TGG | - | tig0022086:36525-36544 | None:intergenic | 35.0% |
| TCCTTCACAATTGACAATTG+TGG | + | tig0022086:36726-36745 | Msa1396780:CDS | 35.0% | |
| CCTTCACAATTGACAATTGT+GGG | + | tig0022086:36727-36746 | Msa1396780:CDS | 35.0% | |
| ! | CATAAAGTCCTTGGTAACTT+GGG | - | tig0022086:36754-36773 | None:intergenic | 35.0% |
| ! | TCATAAAGTCCTTGGTAACT+TGG | - | tig0022086:36755-36774 | None:intergenic | 35.0% |
| GCTTTCATTCATAAAGTCCT+TGG | - | tig0022086:36763-36782 | None:intergenic | 35.0% | |
| CATAATCAGAACCGTTCAAA+AGG | - | tig0022086:36797-36816 | None:intergenic | 35.0% | |
| CCATCTTTGTCTTCATATGT+TGG | - | tig0022086:36822-36841 | None:intergenic | 35.0% | |
| CCAACATATGAAGACAAAGA+TGG | + | tig0022086:36819-36838 | Msa1396780:CDS | 35.0% | |
| ATGAAGACAAAGATGGTGAT+TGG | + | tig0022086:36826-36845 | Msa1396780:CDS | 35.0% | |
| ATGTGAGGTGAAAAAAAGAG+GGG | - | tig0022086:36885-36904 | None:intergenic | 35.0% | |
| !! | TGATGATGAATGGATTGGTT+CGG | - | tig0022086:36960-36979 | None:intergenic | 35.0% |
| ! | CGACTTAATCTGATGATGAA+TGG | - | tig0022086:36970-36989 | None:intergenic | 35.0% |
| ! | TGTTATGAGTTGGATTGGAT+TGG | - | tig0022086:37051-37070 | None:intergenic | 35.0% |
| ! | CAAAGTGTTATGAGTTGGAT+TGG | - | tig0022086:37056-37075 | None:intergenic | 35.0% |
| !! | TTGCATTTTTCAACTGCTCT+TGG | - | tig0022086:37301-37320 | None:intergenic | 35.0% |
| ! | ATTTTTGTCGGAACACAACA+AGG | - | tig0022086:37340-37359 | None:intergenic | 35.0% |
| !! | AACCAGAAGTGGATTTTTGT+CGG | - | tig0022086:37352-37371 | None:intergenic | 35.0% |
| ATGTTTCCAGTTATCATTGC+TGG | + | tig0022086:37657-37676 | Msa1396780:three_prime_UTR | 35.0% | |
| ACAAATCCAGCAATGATAAC+TGG | - | tig0022086:37666-37685 | None:intergenic | 35.0% | |
| GCAAGATCCTTTGTAGTATT+AGG | + | tig0022086:37794-37813 | Msa1396780:three_prime_UTR | 35.0% | |
| ! | CTTGTCTGTCAAGTTGTAAA+TGG | + | tig0022086:37833-37852 | Msa1396780:three_prime_UTR | 35.0% |
| !! | TAAATGGAGCTGATTTGTTG+AGG | + | tig0022086:37849-37868 | Msa1396780:three_prime_UTR | 35.0% |
| TAACAACAAGCACATGGTAT+GGG | - | tig0022086:37908-37927 | None:intergenic | 35.0% | |
| !! | ATACCATGTGCTTGTTGTTA+CGG | + | tig0022086:37908-37927 | Msa1396780:three_prime_UTR | 35.0% |
| ! | TGTTAATTGGTGGGTAGCAA+AGG | + | tig0022086:33411-33430 | Msa1396780:five_prime_UTR | 40.0% |
| GGATTATAAGGGGATTTGTC+GGG | - | tig0022086:33530-33549 | None:intergenic | 40.0% | |
| TGTCAACATCTCCATCCATA+TGG | + | tig0022086:33571-33590 | Msa1396780:five_prime_UTR | 40.0% | |
| ! | TATTTGGTGAAGGGGTTATG+GGG | - | tig0022086:33600-33619 | None:intergenic | 40.0% |
| ! | GTGCGTTTAGAAGATGGTTT+TGG | - | tig0022086:33628-33647 | None:intergenic | 40.0% |
| GCTTCTGTAGCTGAAAACAA+AGG | + | tig0022086:33975-33994 | Msa1396780:CDS | 40.0% | |
| AGAAAAACTCACTTAGCACG+AGG | - | tig0022086:34038-34057 | None:intergenic | 40.0% | |
| TTGTGTGCAACACTATTGAG+GGG | + | tig0022086:34238-34257 | Msa1396780:intron | 40.0% | |
| TATGGTAATCAATCAGGGCA+TGG | + | tig0022086:35288-35307 | Msa1396780:intron | 40.0% | |
| !! | AAGTATTGGATAGTGGGTGA+AGG | + | tig0022086:35388-35407 | Msa1396780:intron | 40.0% |
| !!! | GATTTTTTCTGCGGATAGCA+TGG | + | tig0022086:35451-35470 | Msa1396780:intron | 40.0% |
| CGGAGCCAGACAAAAAAATT+TGG | + | tig0022086:35852-35871 | Msa1396780:intron | 40.0% | |
| !!! | CCACCCCAAATTTTTTTGTC+TGG | - | tig0022086:35860-35879 | None:intergenic | 40.0% |
| CCAGACAAAAAAATTTGGGG+TGG | + | tig0022086:35857-35876 | Msa1396780:intron | 40.0% | |
| AAAAGACCATGATTCACTGG+CGG | - | tig0022086:36340-36359 | None:intergenic | 40.0% | |
| GACAAAAGACCATGATTCAC+TGG | - | tig0022086:36343-36362 | None:intergenic | 40.0% | |
| AATTTGTAGGGCACAAGTTG+TGG | + | tig0022086:36494-36513 | Msa1396780:intron | 40.0% | |
| ATTTGTAGGGCACAAGTTGT+GGG | + | tig0022086:36495-36514 | Msa1396780:intron | 40.0% | |
| ! | TGGGAATGGAGCATTTGTTA+AGG | + | tig0022086:36608-36627 | Msa1396780:CDS | 40.0% |
| ! | AGCATTTGTTAAGGTGAGCA+TGG | + | tig0022086:36617-36636 | Msa1396780:CDS | 40.0% |
| TTTGTTAAGGTGAGCATGGA+TGG | + | tig0022086:36621-36640 | Msa1396780:CDS | 40.0% | |
| CCCACAATTGTCAATTGTGA+AGG | - | tig0022086:36730-36749 | None:intergenic | 40.0% | |
| !! | GATGATGAATGGATTGGTTC+GGG | - | tig0022086:36959-36978 | None:intergenic | 40.0% |
| ! | TGAGTTGGATTGGATTGGAT+TGG | - | tig0022086:37046-37065 | None:intergenic | 40.0% |
| AAGCGTCTTCGCATAATGAA+AGG | + | tig0022086:37146-37165 | Msa1396780:CDS | 40.0% | |
| TTCCGACAAAAATCCACTTC+TGG | + | tig0022086:37347-37366 | Msa1396780:three_prime_UTR | 40.0% | |
| GCAGATTTATCAACCAGAAG+TGG | - | tig0022086:37363-37382 | None:intergenic | 40.0% | |
| ! | GTTGATAAATCTGCATCCCA+AGG | + | tig0022086:37369-37388 | Msa1396780:three_prime_UTR | 40.0% |
| AGTAAGGTCGAGGCTAATAT+AGG | + | tig0022086:37407-37426 | Msa1396780:three_prime_UTR | 40.0% | |
| ATTATAAGTCAAGCACACGC+TGG | - | tig0022086:37630-37649 | None:intergenic | 40.0% | |
| TGCCTTTAGATCCATGAACA+TGG | + | tig0022086:37878-37897 | Msa1396780:three_prime_UTR | 40.0% | |
| CACCATGTTCATGGATCTAA+AGG | - | tig0022086:37883-37902 | None:intergenic | 40.0% | |
| CTTTAGATCCATGAACATGG+TGG | + | tig0022086:37881-37900 | Msa1396780:three_prime_UTR | 40.0% | |
| GTAACAACAAGCACATGGTA+TGG | - | tig0022086:37909-37928 | None:intergenic | 40.0% | |
| ! | TTGGTGGGTAGCAAAGGAAA+AGG | + | tig0022086:33417-33436 | Msa1396780:five_prime_UTR | 45.0% |
| AAAGGAAAAGGCAGGCAAGT+AGG | + | tig0022086:33429-33448 | Msa1396780:five_prime_UTR | 45.0% | |
| AAGGAAAAGGCAGGCAAGTA+GGG | + | tig0022086:33430-33449 | Msa1396780:five_prime_UTR | 45.0% | |
| TTGTCGGGAAAATGAGGTCA+TGG | - | tig0022086:33515-33534 | None:intergenic | 45.0% | |
| !! | CGTGTATGGGTTTTGATGGT+TGG | - | tig0022086:33551-33570 | None:intergenic | 45.0% |
| !! | GACACGTGTATGGGTTTTGA+TGG | - | tig0022086:33555-33574 | None:intergenic | 45.0% |
| GGAGATGTTGACACGTGTAT+GGG | - | tig0022086:33564-33583 | None:intergenic | 45.0% | |
| TGGAGATGTTGACACGTGTA+TGG | - | tig0022086:33565-33584 | None:intergenic | 45.0% | |
| TTATGGGGGAACCATATGGA+TGG | - | tig0022086:33585-33604 | None:intergenic | 45.0% | |
| ! | ATTTGGTGAAGGGGTTATGG+GGG | - | tig0022086:33599-33618 | None:intergenic | 45.0% |
| AAAACTCACTTAGCACGAGG+AGG | - | tig0022086:34035-34054 | None:intergenic | 45.0% | |
| !! | TGGATAGTGGGTGAAGGAAT+AGG | + | tig0022086:35394-35413 | Msa1396780:intron | 45.0% |
| ! | TAGTGGGTGAAGGAATAGGT+TGG | + | tig0022086:35398-35417 | Msa1396780:intron | 45.0% |
| ! | TTTTCTGCGGATAGCATGGT+TGG | + | tig0022086:35455-35474 | Msa1396780:intron | 45.0% |
| ACGATAGAGAATCATGGCAG+TGG | + | tig0022086:35829-35848 | Msa1396780:intron | 45.0% | |
| ATAGAGAATCATGGCAGTGG+CGG | + | tig0022086:35832-35851 | Msa1396780:intron | 45.0% | |
| !! | GTTTCTAGCCGATAGCATGT+CGG | - | tig0022086:36099-36118 | None:intergenic | 45.0% |
| ! | ATGCTATCGGCTAGAAACTC+AGG | + | tig0022086:36101-36120 | Msa1396780:intron | 45.0% |
| !!! | TTTTTAAGATGGGGTGGCCA+AGG | + | tig0022086:36291-36310 | Msa1396780:intron | 45.0% |
| GCATAAATTCGTGCAGTCGA+TGG | + | tig0022086:36398-36417 | Msa1396780:intron | 45.0% | |
| ! | GAAGCAGATAAGAGCACAAG+TGG | + | tig0022086:36582-36601 | Msa1396780:CDS | 45.0% |
| ! | ATAAGAGCACAAGTGGTGGT+GGG | + | tig0022086:36589-36608 | Msa1396780:CDS | 45.0% |
| TGGTGCACCATATCTACGTA+AGG | + | tig0022086:36641-36660 | Msa1396780:CDS | 45.0% | |
| TGCACCATATCTACGTAAGG+TGG | + | tig0022086:36644-36663 | Msa1396780:CDS | 45.0% | |
| AGGTCCACCTTACGTAGATA+TGG | - | tig0022086:36651-36670 | None:intergenic | 45.0% | |
| GATGGTGATTGGATGCTTGT+TGG | + | tig0022086:36837-36856 | Msa1396780:CDS | 45.0% | |
| !! | TGCTTGTTGGTGATGTTCCT+TGG | + | tig0022086:36850-36869 | Msa1396780:CDS | 45.0% |
| !! | GCTTGTTGGTGATGTTCCTT+GGG | + | tig0022086:36851-36870 | Msa1396780:CDS | 45.0% |
| !! | ATTGGTTCGGGTCAGATCAA+CGG | - | tig0022086:36947-36966 | None:intergenic | 45.0% |
| TCGCATAATGAAAGGTTCCG+AGG | + | tig0022086:37154-37173 | Msa1396780:CDS | 45.0% | |
| ATGAAAGGTTCCGAGGCAAT+TGG | + | tig0022086:37161-37180 | Msa1396780:CDS | 45.0% | |
| TGAAAGGTTCCGAGGCAATT+GGG | + | tig0022086:37162-37181 | Msa1396780:CDS | 45.0% | |
| TTTACCTAGCCCAATTGCCT+CGG | - | tig0022086:37174-37193 | None:intergenic | 45.0% | |
| GCACATACTCTGTCACGTAT+TGG | - | tig0022086:37711-37730 | None:intergenic | 45.0% | |
| !! | CTTGTTGTTACGGCCTTCAA+TGG | + | tig0022086:37918-37937 | Msa1396780:three_prime_UTR | 45.0% |
| TTGTTACGGCCTTCAATGGA+GGG | + | tig0022086:37922-37941 | Msa1396780:three_prime_UTR | 45.0% | |
| !! | AAATTAAAAAAATAAAGTAT+TGG | + | tig0022086:35374-35393 | Msa1396780:intron | 5.0% |
| !!! | AAAATTTATTTTTTTTAAGA+TGG | + | tig0022086:36280-36299 | Msa1396780:intron | 5.0% |
| !!! | AAATTTATTTTTTTTAAGAT+GGG | + | tig0022086:36281-36300 | Msa1396780:intron | 5.0% |
| TGGGTAGCAAAGGAAAAGGC+AGG | + | tig0022086:33421-33440 | Msa1396780:five_prime_UTR | 50.0% | |
| AGGAAAAGGCAGGCAAGTAG+GGG | + | tig0022086:33431-33450 | Msa1396780:five_prime_UTR | 50.0% | |
| GGGGATTTGTCGGGAAAATG+AGG | - | tig0022086:33521-33540 | None:intergenic | 50.0% | |
| TGGAAGACCGAGTCGTAACT+CGG | - | tig0022086:33823-33842 | None:intergenic | 50.0% | |
| GGTAATCAATCAGGGCATGG+TGG | + | tig0022086:35291-35310 | Msa1396780:intron | 50.0% | |
| AATCAATCAGGGCATGGTGG+AGG | + | tig0022086:35294-35313 | Msa1396780:intron | 50.0% | |
| ! | CGGATAGCATGGTTGGTTGT+CGG | + | tig0022086:35462-35481 | Msa1396780:intron | 50.0% |
| ! | GGATAGCATGGTTGGTTGTC+GGG | + | tig0022086:35463-35482 | Msa1396780:intron | 50.0% |
| TGAATGCGTGCAGTCGTTGA+CGG | - | tig0022086:35727-35746 | None:intergenic | 50.0% | |
| ATGATTCACTGGCGGAACCA+GGG | - | tig0022086:36332-36351 | None:intergenic | 50.0% | |
| ! | GCAGATAAGAGCACAAGTGG+TGG | + | tig0022086:36585-36604 | Msa1396780:CDS | 50.0% |
| ! | GATAAGAGCACAAGTGGTGG+TGG | + | tig0022086:36588-36607 | Msa1396780:CDS | 50.0% |
| TTGTGGGTCCCAAGTTACCA+AGG | + | tig0022086:36743-36762 | Msa1396780:CDS | 50.0% | |
| TGCATCCCAAGGAAGCAAGT+TGG | + | tig0022086:37380-37399 | Msa1396780:three_prime_UTR | 50.0% | |
| ! | TCGAGCCAACTTGCTTCCTT+GGG | - | tig0022086:37388-37407 | None:intergenic | 50.0% |
| !! | GAAGCAAGTTGGCTCGAGTA+AGG | + | tig0022086:37391-37410 | Msa1396780:three_prime_UTR | 50.0% |
| GTATGGGTCCACCATGTTCA+TGG | - | tig0022086:37892-37911 | None:intergenic | 50.0% | |
| AGGCCGTAACAACAAGCACA+TGG | - | tig0022086:37914-37933 | None:intergenic | 50.0% | |
| GTTGTTACGGCCTTCAATGG+AGG | + | tig0022086:37921-37940 | Msa1396780:three_prime_UTR | 50.0% | |
| !! | GTAGTGGATCCCTCCATTGA+AGG | - | tig0022086:37934-37953 | None:intergenic | 50.0% |
| GGGGTTATGGGGGAACCATA+TGG | - | tig0022086:33589-33608 | None:intergenic | 55.0% | |
| GAGGAGACCGAGTTACGACT+CGG | + | tig0022086:33813-33832 | Msa1396780:CDS | 55.0% | |
| !! | GAGTTACGACTCGGTCTTCC+AGG | + | tig0022086:33822-33841 | Msa1396780:CDS | 55.0% |
| CTTCCAGGTGCAGGTGATCA+CGG | + | tig0022086:33837-33856 | Msa1396780:CDS | 55.0% | |
| ACTCACTTAGCACGAGGAGG+AGG | - | tig0022086:34032-34051 | None:intergenic | 55.0% | |
| GGTGACACGCACACAAGCAA+GGG | - | tig0022086:35606-35625 | None:intergenic | 55.0% | |
| AGGTGACACGCACACAAGCA+AGG | - | tig0022086:35607-35626 | None:intergenic | 55.0% | |
| TGATTCACTGGCGGAACCAG+GGG | - | tig0022086:36331-36350 | None:intergenic | 55.0% | |
| CATGATTCACTGGCGGAACC+AGG | - | tig0022086:36333-36352 | None:intergenic | 55.0% | |
| CTGGTTCCGCCAGTGAATCA+TGG | + | tig0022086:36331-36350 | Msa1396780:intron | 55.0% | |
| GTAGGGCACAAGTTGTGGGA+TGG | + | tig0022086:36499-36518 | Msa1396780:intron | 55.0% | |
| !! | AGCACAAGTGGTGGTGGGAA+TGG | + | tig0022086:36594-36613 | Msa1396780:CDS | 55.0% |
| !! | AAGAGGGGTACTCACTCCCA+AGG | - | tig0022086:36870-36889 | None:intergenic | 55.0% |
| ! | CTCGAGCCAACTTGCTTCCT+TGG | - | tig0022086:37389-37408 | None:intergenic | 55.0% |
| !! | AGTTGGCTCGAGTAAGGTCG+AGG | + | tig0022086:37397-37416 | Msa1396780:three_prime_UTR | 55.0% |
| AAAGGCAGGCAAGTAGGGGC+AGG | + | tig0022086:33435-33454 | Msa1396780:five_prime_UTR | 60.0% | |
| TCTCCGTGATCACCTGCACC+TGG | - | tig0022086:33843-33862 | None:intergenic | 60.0% | |
| GATTCACTGGCGGAACCAGG+GGG | - | tig0022086:36330-36349 | None:intergenic | 60.0% | |
| CCAGCGCATCTGACAGCTCT+TGG | - | tig0022086:36692-36711 | None:intergenic | 60.0% | |
| CCAAGAGCTGTCAGATGCGC+TGG | + | tig0022086:36689-36708 | Msa1396780:CDS | 60.0% | |
| GGTTCCGAGGCAATTGGGCT+AGG | + | tig0022086:37167-37186 | Msa1396780:CDS | 60.0% | |
| !! | CGACTCGGTCTTCCAGGTGC+AGG | + | tig0022086:33828-33847 | Msa1396780:CDS | 65.0% |
| ! | CGCACACAAGCAAGGGCGTG+TGG | - | tig0022086:35599-35618 | None:intergenic | 65.0% |
| GGAACCAGGGGGTGGCAAGG+GGG | - | tig0022086:36319-36338 | None:intergenic | 70.0% | |
| CGGAACCAGGGGGTGGCAAG+GGG | - | tig0022086:36320-36339 | None:intergenic | 70.0% | |
| GCGGAACCAGGGGGTGGCAA+GGG | - | tig0022086:36321-36340 | None:intergenic | 70.0% | |
| TCACTGGCGGAACCAGGGGG+TGG | - | tig0022086:36327-36346 | None:intergenic | 70.0% | |
| GGGGTGGCAAGGGGGAGCCT+TGG | - | tig0022086:36311-36330 | None:intergenic | 75.0% | |
| GGCGGAACCAGGGGGTGGCA+AGG | - | tig0022086:36322-36341 | None:intergenic | 75.0% | |
| ! | GGCTCCCCCTTGCCACCCCC+TGG | + | tig0022086:36312-36331 | Msa1396780:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022086 | gene | 33293 | 38006 | 33293 | ID=Msa1396780;Name=Msa1396780 |
| tig0022086 | mRNA | 33293 | 38006 | 33293 | ID=Msa1396780-mRNA-1;Parent=Msa1396780;Name=Msa1396780-mRNA-1;_AED=0.00;_eAED=0.00;_QI=469|1|1|1|1|1|4|673|251 |
| tig0022086 | exon | 33293 | 34045 | 33293 | ID=Msa1396780-mRNA-1:exon:15698;Parent=Msa1396780-mRNA-1 |
| tig0022086 | exon | 36503 | 36874 | 36503 | ID=Msa1396780-mRNA-1:exon:15699;Parent=Msa1396780-mRNA-1 |
| tig0022086 | exon | 37127 | 37188 | 37127 | ID=Msa1396780-mRNA-1:exon:15700;Parent=Msa1396780-mRNA-1 |
| tig0022086 | exon | 37296 | 38006 | 37296 | ID=Msa1396780-mRNA-1:exon:15701;Parent=Msa1396780-mRNA-1 |
| tig0022086 | five_prime_UTR | 33293 | 33761 | 33293 | ID=Msa1396780-mRNA-1:five_prime_utr;Parent=Msa1396780-mRNA-1 |
| tig0022086 | CDS | 33762 | 34045 | 33762 | ID=Msa1396780-mRNA-1:cds;Parent=Msa1396780-mRNA-1 |
| tig0022086 | CDS | 36503 | 36874 | 36503 | ID=Msa1396780-mRNA-1:cds;Parent=Msa1396780-mRNA-1 |
| tig0022086 | CDS | 37127 | 37188 | 37127 | ID=Msa1396780-mRNA-1:cds;Parent=Msa1396780-mRNA-1 |
| tig0022086 | CDS | 37296 | 37333 | 37296 | ID=Msa1396780-mRNA-1:cds;Parent=Msa1396780-mRNA-1 |
| tig0022086 | three_prime_UTR | 37334 | 38006 | 37334 | ID=Msa1396780-mRNA-1:three_prime_utr;Parent=Msa1396780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
