AlfalfaGEDB | Msa0960580

M. sativa cultivar zhongmu-4 / Msa0960580

KEGG: -
GO: -
PFAM: PF03168.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0960580	RDX72957.1	52.442	389	91	11	4	382	8	312	1.56e-117	354

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0960580	sp\|Q9SJ52\|NHL10_ARATH	39.130	184	103	6	192	373	50	226	2.43e-30	119
Msa0960580	sp\|Q9SJ52\|NHL10_ARATH	40.678	177	76	7	12	164	35	206	2.20e-26	108

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0960580	0.831830	1.335964e-55	-8.615850e-47
Msa0004180	Msa0960580	-0.834034	3.784884e-56	-8.615850e-47
Msa0004940	Msa0960580	0.809875	1.524578e-50	-8.615850e-47
Msa0011010	Msa0960580	0.827328	1.662758e-54	-8.615850e-47
Msa0011040	Msa0960580	0.843293	1.532251e-58	-8.615850e-47
Msa0013270	Msa0960580	0.825411	4.756110e-54	-8.615850e-47
Msa0014280	Msa0960580	0.803396	3.556008e-49	-8.615850e-47
Msa0014590	Msa0960580	0.816160	6.381084e-52	-8.615850e-47
Msa0017710	Msa0960580	0.806202	9.223186e-50	-8.615850e-47
Msa0025570	Msa0960580	0.806748	7.075947e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0960580	MtrunA17_Chr6g0478671	91.626	203	17	0	182	384	9	211	6.12e-120	346
Msa0960580	MtrunA17_Chr6g0478671	75.500	200	38	3	3	191	6	205	4.60e-96	285
Msa0960580	MtrunA17_Chr6g0478661	87.129	202	15	3	1	191	1	202	2.33e-106	311
Msa0960580	MtrunA17_Chr6g0478661	85.417	192	28	0	192	383	16	207	4.43e-99	293
Msa0960580	MtrunA17_Chr6g0479071	79.082	196	36	2	192	382	20	215	1.06e-97	290
Msa0960580	MtrunA17_Chr6g0479071	70.244	205	45	4	3	191	7	211	3.22e-87	263
Msa0960580	MtrunA17_Chr6g0479081	82.162	185	32	1	199	382	27	211	9.10e-93	277
Msa0960580	MtrunA17_Chr6g0479081	67.164	201	54	4	3	191	7	207	2.64e-79	243
Msa0960580	MtrunA17_Chr1g0177471	41.808	177	91	9	200	373	74	241	9.50e-30	115
Msa0960580	MtrunA17_Chr1g0177471	40.000	170	89	7	24	184	74	239	3.83e-26	105

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0960580	AT2G35980.1	39.130	184	103	6	192	373	50	226	2.47e-31	119
Msa0960580	AT2G35980.1	40.678	177	76	7	12	164	35	206	2.23e-27	108
Msa0960580	AT5G06320.1	40.761	184	97	8	192	373	57	230	2.46e-30	116
Msa0960580	AT5G06320.1	37.158	183	98	8	11	183	52	227	3.75e-25	102
Msa0960580	AT2G35460.1	37.705	183	102	8	193	373	65	237	2.96e-29	114
Msa0960580	AT2G35460.1	34.759	187	106	7	7	183	54	234	4.89e-26	105
Msa0960580	AT3G11650.1	34.426	183	111	6	192	373	64	238	7.25e-27	107
Msa0960580	AT3G11650.1	31.217	189	116	6	4	183	52	235	6.32e-24	99.4
Msa0960580	AT1G32270.2	30.968	155	98	6	204	355	1	149	2.05e-13	71.2
Msa0960580	AT1G32270.1	30.968	155	98	6	204	355	1	149	4.67e-13	70.5

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Find 70 sgRNAs with CRISPR-Local

Find 522 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGACCACACTGAACAAC+GGG	0.439004	6_3:-80015968	None:intergenic
AAACGACGACACTGCAGAAC+CGG	0.436027	6_3:-80012512	None:intergenic
AAGCCACCCGTTGTTCAGTG+TGG	0.630778	6_3:+80015962	Msa0960580:CDS
AATATAAGTTGTTGTTTGTG+AGG	0.572559	6_3:-80012166	None:intergenic
AATATAAGTTGTTGTTTGTG+AGG	0.572559	6_3:-80015622	None:intergenic
AATTCATCACCAATATGGGT+TGG	0.511959	6_3:+80012012	None:intergenic
ACATGAAATTTCACGCTTGA+GGG	0.450161	6_3:-80012116	None:intergenic
ACGTGAAATTTCACGCTTGA+GGG	0.459607	6_3:-80015572	None:intergenic
ACTTTGACACCCTTTGATCA+AGG	0.484433	6_3:+80012299	Msa0960580:CDS
AGAATCAGTACTACATCTTC+TGG	0.301201	6_3:-80016053	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATAGACTATGATGTTGTTGT+TGG	-	chr6_3:80012225-80012244	None:intergenic	30.0%
AGTCTATTATCGAAGAATCA+AGG	+	chr6_3:80012238-80012257	Msa0960580:intron	30.0%
GAATTTCCTTTGAATTCGAT+AGG	-	chr6_3:80012350-80012369	None:intergenic	30.0%
GGAAATTCTATCATCAAACT+TGG	+	chr6_3:80012362-80012381	Msa0960580:CDS	30.0%
ATTCGAATTAGAGCTAAGTA+TGG	+	chr6_3:80012458-80012477	Msa0960580:intron	30.0%
CTATTGGAAGAAGAAATCAA+AGG	-	chr6_3:80012545-80012564	None:intergenic	30.0%
TTGCTGCTCTATTTATATCA+CGG	-	chr6_3:80012631-80012650	None:intergenic	30.0%
AGCAACAGTTTGATATCTTT+AGG	+	chr6_3:80012646-80012665	Msa0960580:intron	30.0%
AACAGTTTGATATCTTTAGG+TGG	+	chr6_3:80012649-80012668	Msa0960580:intron	30.0%
ACAACCAGATAGATCTAAAA+TGG	-	chr6_3:80012859-80012878	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_3	gene	80012026	80016108	80012026	ID=Msa0960580;Name=Msa0960580
chr6_3	mRNA	80012026	80016108	80012026	ID=Msa0960580-mRNA-1;Parent=Msa0960580;Name=Msa0960580-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|0\|0\|1\|0\|0\|4\|0\|384
chr6_3	exon	80012026	80012238	80012026	ID=Msa0960580-mRNA-1:exon:14421;Parent=Msa0960580-mRNA-1
chr6_3	exon	80012260	80012474	80012260	ID=Msa0960580-mRNA-1:exon:14422;Parent=Msa0960580-mRNA-1
chr6_3	exon	80012484	80012629	80012484	ID=Msa0960580-mRNA-1:exon:14423;Parent=Msa0960580-mRNA-1
chr6_3	exon	80015528	80016108	80015528	ID=Msa0960580-mRNA-1:exon:14424;Parent=Msa0960580-mRNA-1
chr6_3	CDS	80012026	80012238	80012026	ID=Msa0960580-mRNA-1:cds;Parent=Msa0960580-mRNA-1
chr6_3	CDS	80012260	80012474	80012260	ID=Msa0960580-mRNA-1:cds;Parent=Msa0960580-mRNA-1
chr6_3	CDS	80012484	80012629	80012484	ID=Msa0960580-mRNA-1:cds;Parent=Msa0960580-mRNA-1
chr6_3	CDS	80015528	80016108	80015528	ID=Msa0960580-mRNA-1:cds;Parent=Msa0960580-mRNA-1

Gene Sequence

>Msa0960580

ATGGGTTGGGTCGCACGCATTTGTTGCACATTATGTTGTCTTGTAGTCCTCTTCGTAATTACCATCATCGTCTTCTGGATAATAGTCTCCCCCTCAAGCGTGAAATTTCATGTAACCGATGCAACTCTCACCGAGTTCAACCTCACAAACAACAACTTATATTACAATTTCAAAGTGAATGTCACAGCAAGAAACCCCAACAACAACATCATAGCCATTGCTTGGTACAAAGACAATGATTTCAGTCATATAACTTTGACACCCTTTGATCAAGGACACAAAAATACCACTTTTCTTGGACCTATCGAATTCAAAGGAAATTCTATCATCAAACTTGGACGTCAACAACTTAACGAGTATTCTGAAGAGACACGTCTTGGGATTTATAAAGATTTGGCTGTTGATTTTGATATTCGAATTAGAGCTAACTTCTATAAGACTGGTCGGTTTAATCCACCGGTTCTGCAGTGTCGTCGTTTGAGAGTTCCTTTGATTTCTTCTTCCAATAGTAACTCATCATCACCATTTTCTTTTAGTCCCAGGAGATGTAGCAGTGGTGATTTCTTTACGGACCTCCTCTTCGTAATTGCCATCATAGTCTTCTGGATAGTAATCTCTCCCTCAAGCGTGAAATTTCACGTAACCGATGCAACTCTCACTGAGTTCAACCTCACAAACAACAACTTATATTACAATTTCAAAGTGAATATCACAGCAAGAAACCCCAACAACAACATCATAGTCTATTATCGAAGAATCACTGCGATTGCCTGGTACAAAGACAATGATTTCAGTCGTGTGAGTTTGTCACCCTTTGATCAAGGACATAAGAATACCACTTTTCTTGGACCTATAGAATTTAAAGGAAATGCTACGATCAAACTTGGACGTCAACAACTTAACGAGTATTCTGAAGAGACGCGTCTTGGGATTTATAACGATTTGGCTGTTGATTTTGATTTTCGAATTAGAGCTAAGTTTGGCAGCTTTTATAAAAGTGGTCGGTTTAAGCCACCCGTTGTTCAGTGTGGTCGTTTGAGTGTTCCTTTGGTTTCTTCTTCCAATGGTAACTCATCATCATCAACATTTTCTTTTAGTCCCAGAAGATGTAGTACTGATTCTTTCTTTATAGACCGTGATATAAATAAATATTGA

Protein sequence

>Msa0960580

MGWVARICCTLCCLVVLFVITIIVFWIIVSPSSVKFHVTDATLTEFNLTNNNLYYNFKVNVTARNPNNNIIAIAWYKDNDFSHITLTPFDQGHKNTTFLGPIEFKGNSIIKLGRQQLNEYSEETRLGIYKDLAVDFDIRIRANFYKTGRFNPPVLQCRRLRVPLISSSNSNSSSPFSFSPRRCSSGDFFTDLLFVIAIIVFWIVISPSSVKFHVTDATLTEFNLTNNNLYYNFKVNITARNPNNNIIVYYRRITAIAWYKDNDFSRVSLSPFDQGHKNTTFLGPIEFKGNATIKLGRQQLNEYSEETRLGIYNDLAVDFDFRIRAKFGSFYKSGRFKPPVVQCGRLSVPLVSSSNGNSSSSTFSFSPRRCSTDSFFIDRDINKY*