AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60477


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60477.t1 MTR_3g028720 97.318 522 14 0 1 522 1 522 0.0 1056
MS.gene60477.t1 MTR_4g066580 88.314 522 60 1 1 521 1 522 0.0 978
MS.gene60477.t1 MTR_3g028720 97.386 459 12 0 1 459 1 459 0.0 929
MS.gene60477.t1 MTR_3g028720 96.941 425 13 0 1 425 1 425 0.0 855
MS.gene60477.t1 MTR_4g066590 72.115 520 141 2 5 524 4 519 0.0 808
MS.gene60477.t1 MTR_4g066630 74.494 494 125 1 25 518 27 519 0.0 800
MS.gene60477.t1 MTR_4g066580 88.084 428 50 1 1 427 1 428 0.0 795
MS.gene60477.t1 MTR_3g028720 96.658 389 13 0 1 389 1 389 0.0 785
MS.gene60477.t1 MTR_2g098540 69.455 514 150 1 1 514 1 507 0.0 759
MS.gene60477.t1 MTR_2g098520 69.216 510 156 1 6 514 1 510 0.0 756
MS.gene60477.t1 MTR_2g098790 68.288 514 163 0 1 514 1 514 0.0 754
MS.gene60477.t1 MTR_6g078450 68.085 517 161 2 1 516 1 514 0.0 745
MS.gene60477.t1 MTR_6g078330 67.446 513 165 1 3 515 4 514 0.0 728
MS.gene60477.t1 MTR_4g066640 67.928 502 157 2 14 514 15 513 0.0 727
MS.gene60477.t1 MTR_4g066240 65.039 512 176 1 3 514 4 512 0.0 723
MS.gene60477.t1 MTR_4g066210 65.408 503 172 1 22 524 27 527 0.0 719
MS.gene60477.t1 MTR_4g066240 64.912 513 176 2 3 514 4 513 0.0 719
MS.gene60477.t1 MTR_2g098540 72.271 458 127 0 57 514 6 463 0.0 716
MS.gene60477.t1 MTR_4g066630 75.346 434 106 1 25 458 27 459 0.0 709
MS.gene60477.t1 MTR_6g078380 66.408 515 163 4 6 515 5 514 0.0 703
MS.gene60477.t1 MTR_5g071520 65.267 524 172 2 1 514 1 524 0.0 692
MS.gene60477.t1 MTR_6g078450 68.913 460 139 2 1 459 1 457 0.0 663
MS.gene60477.t1 MTR_4g066330 61.731 520 168 3 1 515 1 494 0.0 658
MS.gene60477.t1 MTR_4g066630 75.188 399 98 1 25 423 27 424 0.0 650
MS.gene60477.t1 MTR_4g066340 68.721 438 136 1 78 514 2 439 0.0 646
MS.gene60477.t1 MTR_4g066280 60.721 499 164 3 23 515 22 494 0.0 634
MS.gene60477.t1 MTR_3g026280 61.250 480 181 2 35 514 19 493 0.0 626
MS.gene60477.t1 MTR_4g067040 75.194 387 95 1 25 411 22 407 0.0 625
MS.gene60477.t1 MTR_6g078330 70.244 410 122 0 106 515 1 410 0.0 618
MS.gene60477.t1 MTR_4g023000 58.350 497 201 3 18 514 4 494 0.0 604
MS.gene60477.t1 MTR_4g066240 64.846 421 145 1 3 423 4 421 0.0 592
MS.gene60477.t1 MTR_4g067040 75.137 366 90 1 25 390 22 386 0.0 592
MS.gene60477.t1 MTR_6g078330 69.211 393 121 0 123 515 18 410 0.0 583
MS.gene60477.t1 MTR_4g066630 74.929 351 87 1 25 375 27 376 0.0 570
MS.gene60477.t1 MTR_4g015420 57.404 493 170 7 34 514 61 525 0.0 568
MS.gene60477.t1 MTR_2g043200 58.368 478 165 6 43 514 70 519 0.0 553
MS.gene60477.t1 MTR_4g015460 56.226 514 178 10 15 513 19 500 0.0 550
MS.gene60477.t1 MTR_3g026400 54.118 510 225 6 6 514 8 509 0.0 549
MS.gene60477.t1 MTR_4g066640 68.254 378 116 2 14 390 15 389 0.0 542
MS.gene60477.t1 MTR_3g026620 53.033 511 234 4 4 514 6 510 0.0 540
MS.gene60477.t1 MTR_6g078330 67.473 372 119 1 3 374 4 373 0.0 529
MS.gene60477.t1 MTR_4g083000 51.731 491 227 6 27 513 18 502 0.0 523
MS.gene60477.t1 MTR_3g026400 54.812 478 206 6 38 514 10 478 0.0 523
MS.gene60477.t1 MTR_5g044000 48.456 518 236 6 23 512 6 520 1.41e-175 506
MS.gene60477.t1 MTR_4g081530 50.410 488 236 4 32 516 18 502 1.62e-171 496
MS.gene60477.t1 MTR_0110s0040 48.228 508 255 6 8 515 14 513 2.71e-165 479
MS.gene60477.t1 MTR_0110s0030 47.184 515 256 7 1 515 15 513 6.62e-163 474
MS.gene60477.t1 MTR_3g033790 46.694 484 234 7 38 516 19 483 1.65e-155 454
MS.gene60477.t1 MTR_3g033810 46.570 481 240 7 35 513 18 483 5.51e-154 450
MS.gene60477.t1 MTR_4g131810 45.051 495 255 5 43 528 33 519 5.05e-153 449
MS.gene60477.t1 MTR_2g079580 46.042 480 248 6 37 512 31 503 1.78e-149 440
MS.gene60477.t1 MTR_2g079550 46.764 479 244 6 38 512 30 501 3.24e-149 439
MS.gene60477.t1 MTR_2g022760 44.981 518 264 7 6 520 18 517 1.04e-148 437
MS.gene60477.t1 MTR_4g083000 51.456 412 192 4 106 513 1 408 1.34e-148 433
MS.gene60477.t1 MTR_7g068910 44.813 482 248 7 37 515 30 496 3.45e-142 421
MS.gene60477.t1 MTR_4g131800 46.105 475 250 5 43 515 521 991 1.19e-141 435
MS.gene60477.t1 MTR_2g022710 43.902 492 270 5 37 526 34 521 3.50e-141 418
MS.gene60477.t1 MTR_3g026400 57.429 350 143 4 6 355 8 351 4.69e-139 407
MS.gene60477.t1 MTR_7g068910 43.902 492 248 8 37 515 30 506 6.37e-139 413
MS.gene60477.t1 MTR_5g068740 44.082 490 245 10 32 513 21 489 3.40e-138 410
MS.gene60477.t1 MTR_4g016920 43.892 483 253 7 37 516 26 493 1.01e-137 409
MS.gene60477.t1 MTR_7g033860 45.208 480 238 8 40 512 50 511 1.44e-136 406
MS.gene60477.t1 MTR_1g088610 42.300 513 259 9 8 513 6 488 2.00e-133 402
MS.gene60477.t1 MTR_1g088610 35.043 117 69 2 398 513 503 613 7.84e-13 71.6
MS.gene60477.t1 MTR_0108s0030 43.975 473 236 5 40 512 5 448 2.80e-133 395
MS.gene60477.t1 MTR_7g051610 43.724 478 249 6 39 515 76 534 6.25e-124 375
MS.gene60477.t1 MTR_2g022760 46.172 418 218 5 106 520 1 414 4.15e-123 368
MS.gene60477.t1 MTR_7g051510 42.739 482 252 7 39 517 76 536 5.12e-123 372
MS.gene60477.t1 MTR_2g079580 46.547 391 199 5 37 423 31 415 1.17e-122 367
MS.gene60477.t1 MTR_0110s0040 50.000 360 175 4 12 371 18 372 2.20e-120 361
MS.gene60477.t1 MTR_7g051650 41.875 480 250 7 39 512 76 532 1.76e-118 361
MS.gene60477.t1 MTR_7g051650 41.719 477 251 7 39 512 76 528 7.62e-118 359
MS.gene60477.t1 MTR_2g022710 43.868 424 233 4 37 458 34 454 3.60e-117 355
MS.gene60477.t1 MTR_2g022710 43.868 424 233 4 37 458 34 454 5.22e-117 355
MS.gene60477.t1 MTR_2g022710 42.553 423 238 4 106 526 1 420 3.24e-116 351
MS.gene60477.t1 MTR_2g022710 45.758 389 206 4 37 423 34 419 5.48e-115 348
MS.gene60477.t1 MTR_1g088630 42.672 464 214 12 57 513 14 432 1.14e-114 348
MS.gene60477.t1 MTR_7g068900 42.280 421 217 6 101 513 17 419 1.23e-112 344
MS.gene60477.t1 MTR_4g016920 42.512 414 221 6 106 516 1 400 6.92e-110 335
MS.gene60477.t1 MTR_2g022710 45.093 377 202 4 37 411 34 407 9.39e-109 331
MS.gene60477.t1 MTR_1g088630 49.068 322 128 6 40 357 29 318 1.43e-102 314
MS.gene60477.t1 MTR_2g022710 46.023 352 185 4 37 386 34 382 3.74e-101 312
MS.gene60477.t1 MTR_7g056747 41.627 418 218 4 100 516 9 401 4.06e-101 311
MS.gene60477.t1 MTR_1g088630 52.045 269 117 4 40 304 29 289 6.42e-93 287
MS.gene60477.t1 MTR_4g016920 48.889 270 135 2 106 374 1 268 2.73e-88 275
MS.gene60477.t1 MTR_0110s0020 48.872 266 123 5 1 266 15 267 9.05e-82 258
MS.gene60477.t1 MTR_5g069350 42.775 173 58 6 352 514 48 189 3.22e-30 117
MS.gene60477.t1 MTR_4g122980 26.634 413 222 13 102 504 183 524 1.44e-28 120
MS.gene60477.t1 MTR_8g038650 39.669 121 63 1 249 359 32 152 2.07e-23 97.4
MS.gene60477.t1 MTR_8g038650 48.571 70 35 1 47 116 7 75 1.83e-13 68.9
MS.gene60477.t1 MTR_4g061170 66.667 42 12 1 460 499 23 64 2.20e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60477.t1 AT2G44480 57.652 477 201 1 36 512 33 508 0.0 589
MS.gene60477.t1 AT2G44480 57.652 477 201 1 36 512 64 539 0.0 589
MS.gene60477.t1 AT5G44640 55.078 512 218 4 7 517 6 506 0.0 581
MS.gene60477.t1 AT5G42260 56.461 503 207 4 7 508 6 497 0.0 580
MS.gene60477.t1 AT2G44450 57.113 478 200 2 38 515 31 503 0.0 573
MS.gene60477.t1 AT3G60130 55.765 477 205 3 38 513 30 501 0.0 551
MS.gene60477.t1 AT2G25630 55.042 476 191 4 38 512 30 483 0.0 537
MS.gene60477.t1 AT5G24550 52.439 492 221 6 38 521 32 518 0.0 529
MS.gene60477.t1 AT3G60140 48.356 517 251 5 1 514 1 504 0.0 525
MS.gene60477.t1 AT1G51470 52.381 483 216 7 34 514 41 511 0.0 524
MS.gene60477.t1 AT1G47600 51.346 483 221 7 34 514 41 511 7.95e-179 514
MS.gene60477.t1 AT5G24540 52.263 486 227 5 38 519 32 516 2.07e-178 514
MS.gene60477.t1 AT1G47600 51.346 483 220 7 34 514 41 510 3.38e-178 513
MS.gene60477.t1 AT2G44470 48.589 496 245 5 38 524 29 523 3.04e-177 513
MS.gene60477.t1 AT2G44490 51.245 482 229 5 37 513 13 493 1.24e-176 510
MS.gene60477.t1 AT3G60120 51.860 484 222 7 37 514 13 491 1.33e-176 509
MS.gene60477.t1 AT2G44480 55.961 411 180 1 106 516 1 410 7.41e-175 500
MS.gene60477.t1 AT1G26560 49.290 493 230 5 30 512 24 506 2.11e-174 503
MS.gene60477.t1 AT5G54570 50.728 481 228 4 37 512 29 505 9.82e-172 497
MS.gene60477.t1 AT2G44460 49.696 493 243 5 34 523 25 515 1.66e-171 498
MS.gene60477.t1 AT3G18080 50.412 486 233 6 33 517 34 512 1.78e-168 488
MS.gene60477.t1 AT3G60130 54.762 420 184 3 95 513 35 449 3.74e-164 475
MS.gene60477.t1 AT5G25980 46.705 516 264 9 6 517 19 527 2.78e-163 476
MS.gene60477.t1 AT3G18070 46.914 486 242 7 33 517 25 495 5.29e-159 463
MS.gene60477.t1 AT3G18070 46.914 486 248 7 33 517 25 501 4.52e-158 461
MS.gene60477.t1 AT3G60130 53.571 420 178 4 95 513 35 438 1.20e-156 455
MS.gene60477.t1 AT1G75940 47.131 488 248 7 38 517 37 522 1.67e-156 458
MS.gene60477.t1 AT3G09260 46.170 483 255 5 38 517 35 515 6.40e-156 456
MS.gene60477.t1 AT5G36890 47.808 479 237 4 40 517 18 484 8.22e-156 454
MS.gene60477.t1 AT5G36890 47.808 479 237 4 40 517 18 484 1.23e-155 454
MS.gene60477.t1 AT3G03640 45.455 484 258 4 36 514 32 514 1.84e-155 455
MS.gene60477.t1 AT3G21370 46.708 486 245 8 37 513 32 512 4.47e-155 454
MS.gene60477.t1 AT2G44470 47.754 423 218 3 38 458 29 450 1.37e-150 440
MS.gene60477.t1 AT5G26000 44.894 519 263 11 7 512 3 511 2.65e-150 442
MS.gene60477.t1 AT2G32860 44.742 485 264 4 37 518 93 576 4.06e-150 444
MS.gene60477.t1 AT5G28510 45.661 484 251 7 38 512 39 519 1.66e-149 440
MS.gene60477.t1 AT5G24540 51.179 424 203 4 38 458 32 454 2.50e-149 437
MS.gene60477.t1 AT5G54570 50.000 428 202 3 37 458 29 450 4.57e-149 436
MS.gene60477.t1 AT1G52400 43.678 522 282 9 1 515 2 518 4.69e-149 439
MS.gene60477.t1 AT1G52400 43.678 522 282 9 1 515 2 518 4.69e-149 439
MS.gene60477.t1 AT1G66280 47.177 496 246 10 26 512 22 510 1.17e-148 437
MS.gene60477.t1 AT2G32860 44.628 484 264 4 37 516 93 576 1.61e-148 441
MS.gene60477.t1 AT1G66270 45.600 500 261 8 24 517 21 515 5.68e-148 436
MS.gene60477.t1 AT1G66270 45.657 495 256 9 24 512 21 508 2.15e-144 427
MS.gene60477.t1 AT3G60140 48.615 397 201 3 29 423 17 412 2.29e-144 424
MS.gene60477.t1 AT1G02850 46.170 483 239 9 35 513 21 486 1.35e-143 424
MS.gene60477.t1 AT4G27830 42.914 501 265 7 34 530 19 502 7.78e-141 417
MS.gene60477.t1 AT5G54570 50.000 412 197 4 106 512 1 408 8.59e-141 414
MS.gene60477.t1 AT5G25980 46.053 456 237 7 6 459 19 467 1.03e-140 415
MS.gene60477.t1 AT5G25980 46.053 456 237 7 6 459 19 467 1.03e-140 415
MS.gene60477.t1 AT1G61820 43.763 489 269 6 33 518 25 510 1.81e-140 416
MS.gene60477.t1 AT2G44450 54.622 357 157 2 159 515 1 352 1.88e-139 408
MS.gene60477.t1 AT1G02850 44.269 506 238 10 35 513 21 509 3.54e-139 413
MS.gene60477.t1 AT1G61810 44.654 477 258 5 43 516 38 511 3.99e-139 413
MS.gene60477.t1 AT1G02850 44.576 507 236 11 35 513 21 510 6.44e-138 410
MS.gene60477.t1 AT4G21760 41.892 518 288 7 3 518 21 527 6.96e-138 411
MS.gene60477.t1 AT1G60090 42.828 495 259 8 38 528 24 498 3.79e-137 407
MS.gene60477.t1 AT2G44480 60.000 315 123 2 25 337 51 364 1.51e-136 402
MS.gene60477.t1 AT1G61810 44.731 465 249 5 43 501 38 500 4.11e-134 401
MS.gene60477.t1 AT4G22100 43.002 493 257 10 40 528 24 496 8.06e-134 399
MS.gene60477.t1 AT4G27820 45.000 480 241 7 37 512 22 482 1.54e-133 398
MS.gene60477.t1 AT1G02850 44.720 483 219 10 35 513 21 459 3.97e-133 396
MS.gene60477.t1 AT1G60090 41.283 499 268 9 38 528 24 505 3.98e-133 397
MS.gene60477.t1 AT4G21760 41.473 516 283 8 3 518 21 517 1.24e-131 394
MS.gene60477.t1 AT5G26000 44.612 464 236 9 7 459 3 456 1.96e-131 391
MS.gene60477.t1 AT3G62750 42.531 482 245 8 35 512 20 473 1.61e-130 390
MS.gene60477.t1 AT3G62750 41.586 517 267 10 3 512 11 499 3.17e-130 390
MS.gene60477.t1 AT2G44470 50.149 335 165 2 38 371 29 362 3.58e-128 380
MS.gene60477.t1 AT1G45191 42.308 494 255 10 39 528 30 497 9.40e-128 384
MS.gene60477.t1 AT1G52400 43.534 464 251 8 1 458 2 460 2.14e-126 379
MS.gene60477.t1 AT1G45191 41.903 494 263 10 39 528 30 503 1.04e-125 379
MS.gene60477.t1 AT1G45191 41.616 495 268 9 39 528 30 508 5.19e-125 377
MS.gene60477.t1 AT1G45191 41.188 505 268 10 39 528 30 520 9.03e-123 372
MS.gene60477.t1 AT3G62740 39.834 482 263 9 35 512 20 478 1.62e-120 365
MS.gene60477.t1 AT1G02850 45.894 414 189 7 35 423 21 424 8.31e-119 358
MS.gene60477.t1 AT2G44460 50.000 370 181 4 157 523 1 369 5.36e-116 351
MS.gene60477.t1 AT1G61810 44.282 411 223 5 109 516 4 411 1.45e-114 347
MS.gene60477.t1 AT5G48375 42.630 441 185 6 38 477 38 411 1.50e-114 347
MS.gene60477.t1 AT3G62750 41.075 465 240 9 3 461 11 447 6.47e-113 344
MS.gene60477.t1 AT1G51490 49.857 349 158 7 45 390 27 361 4.35e-112 340
MS.gene60477.t1 AT2G44480 51.987 302 144 1 215 516 6 306 1.60e-111 335
MS.gene60477.t1 AT4G27830 43.066 411 215 6 106 512 1 396 3.35e-110 335
MS.gene60477.t1 AT1G61810 44.531 384 208 4 43 423 38 419 8.17e-110 335
MS.gene60477.t1 AT3G18070 48.615 325 161 4 33 357 25 343 6.35e-108 328
MS.gene60477.t1 AT3G62750 46.041 341 164 5 35 371 20 344 5.07e-106 323
MS.gene60477.t1 AT3G62750 46.041 341 164 5 35 371 20 344 5.07e-106 323
MS.gene60477.t1 AT1G60270 46.110 347 176 5 38 381 24 362 1.43e-105 322
MS.gene60477.t1 AT1G45191 47.962 319 158 3 39 357 30 340 1.44e-105 323
MS.gene60477.t1 AT1G45191 47.962 319 158 3 39 357 30 340 1.69e-105 323
MS.gene60477.t1 AT3G62750 45.748 341 165 4 35 371 46 370 3.19e-105 323
MS.gene60477.t1 AT3G62740 40.047 427 230 8 35 458 20 423 3.69e-105 323
MS.gene60477.t1 AT4G27820 43.066 411 216 6 106 512 1 397 6.01e-103 317
MS.gene60477.t1 AT4G27820 43.066 411 216 6 106 512 1 397 6.01e-103 317
MS.gene60477.t1 AT3G18070 46.667 330 171 4 189 517 99 424 6.05e-102 314
MS.gene60477.t1 AT3G18070 48.529 68 34 1 33 100 25 91 2.94e-14 75.5
MS.gene60477.t1 AT1G61820 42.973 370 206 5 152 518 4 371 3.54e-100 308
MS.gene60477.t1 AT3G62750 40.146 411 219 7 106 512 1 388 1.73e-98 305
MS.gene60477.t1 AT3G62750 40.146 411 219 7 106 512 1 388 1.73e-98 305
MS.gene60477.t1 AT3G18070 46.203 316 165 4 203 517 1 312 3.27e-96 295
MS.gene60477.t1 AT1G61810 50.943 265 128 2 43 307 38 300 1.45e-89 278
MS.gene60477.t1 AT1G60270 45.848 277 143 4 108 381 3 275 2.35e-78 249
MS.gene60477.t1 AT3G18070 45.992 237 126 2 190 425 100 335 4.95e-68 224
MS.gene60477.t1 AT3G18070 48.529 68 34 1 33 100 25 91 1.71e-14 75.5
MS.gene60477.t1 AT3G18070 45.089 224 121 2 203 425 1 223 1.81e-62 205
MS.gene60477.t1 AT5G16580 36.424 302 159 8 178 469 21 299 1.41e-50 176
MS.gene60477.t1 AT3G06510 28.090 445 229 19 101 513 159 544 2.27e-28 120
MS.gene60477.t1 AT3G06510 26.995 426 224 15 101 513 159 510 6.42e-28 118

Find 116 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTGATTGATTACAGGTTTA+TGG 0.107499 3.2:+20079897 MS.gene60477:intron
CTATGCAGAACTTTGCTTTA+AGG 0.124695 3.2:+20079197 MS.gene60477:CDS
TATATATACCTGGATATTTA+TGG 0.130865 3.2:-20078050 None:intergenic
CAATTTCATCAATGAGTTAT+TGG 0.144645 3.2:+20078755 MS.gene60477:CDS
GTCCATTTGCATAGCCATTT+TGG 0.189127 3.2:-20079275 None:intergenic
TTCCCCAAAGGATTTATATT+TGG 0.190969 3.2:+20077708 MS.gene60477:CDS
TTGATTTACATCACTGAAAA+TGG 0.211288 3.2:+20080437 MS.gene60477:CDS
TAGCTACTTGACAGATTCTT+TGG 0.267402 3.2:+20080095 MS.gene60477:CDS
GAACTTTGCTTTAAGGAGTT+TGG 0.267895 3.2:+20079204 MS.gene60477:CDS
GAATCACCACCGGTGCAATT+TGG 0.269114 3.2:-20079333 None:intergenic
CCATGGAGTTATAGCCAAAA+TGG 0.293477 3.2:+20079261 MS.gene60477:CDS
TGGGAAACCTATTGGTATTA+AGG 0.294593 3.2:+20080246 MS.gene60477:CDS
GAAACTCAAAAGGGTGTAAT+AGG 0.295734 3.2:+20079602 MS.gene60477:CDS
GGCAGCTTTCTGATCAGATT+TGG 0.301690 3.2:-20079666 None:intergenic
ATCAATGAGTTATTGGCTAA+TGG 0.321569 3.2:+20078762 MS.gene60477:CDS
TGCTCCAAATATAAATCCTT+TGG 0.329647 3.2:-20077712 None:intergenic
TTGGTGATAGGGTGAAATAT+TGG 0.332158 3.2:+20079223 MS.gene60477:CDS
GTGGTAGAACACCAAGTATA+TGG 0.346943 3.2:+20078016 MS.gene60477:CDS
TTTATTTATGATTAGTTTGA+AGG 0.349443 3.2:+20077979 MS.gene60477:intron
CATGAAATCAACAGCTCTTT+CGG 0.357047 3.2:-20079687 None:intergenic
GCTCCAAATATAAATCCTTT+GGG 0.358972 3.2:-20077711 None:intergenic
ATATATACCTGGATATTTAT+GGG 0.366623 3.2:-20078049 None:intergenic
GCACAAGTGCAAAAGCAATT+AGG 0.372097 3.2:-20077605 None:intergenic
TGGTGATAGGGTGAAATATT+GGG 0.377550 3.2:+20079224 MS.gene60477:CDS
TGGTAGTGCGTGACAATATA+GGG 0.377896 3.2:-20079366 None:intergenic
CACCAGGTCGTTGTTCTAGT+TGG 0.391277 3.2:+20079304 MS.gene60477:CDS
TCGGGTTATTCCGTGAGATT+TGG 0.395849 3.2:+20080843 MS.gene60477:CDS
CTTTGTCTTGTACACATTGA+CGG 0.398620 3.2:-20079409 None:intergenic
TTGGTAGTGCGTGACAATAT+AGG 0.399199 3.2:-20079367 None:intergenic
CTTGTACACATTGACGGCTT+CGG 0.403989 3.2:-20079403 None:intergenic
AAGTGTCCATGAGCGATTCT+TGG 0.413109 3.2:-20080617 None:intergenic
CTTTAAGGAGTTTGGTGATA+GGG 0.414985 3.2:+20079212 MS.gene60477:CDS
GCTTTAAGGAGTTTGGTGAT+AGG 0.417021 3.2:+20079211 MS.gene60477:CDS
ACATTTGTGGATTACAAGAA+TGG 0.418146 3.2:+20080870 MS.gene60477:CDS
GTCGGCTTTGTTTACAGTAA+AGG 0.420110 3.2:+20081548 MS.gene60477:CDS
GATAATATAGATGACGATAA+TGG 0.420645 3.2:-20080653 None:intergenic
GTATAACCTTGGTAGCTAAC+TGG 0.426224 3.2:+20079624 MS.gene60477:CDS
AGCAAAGTTCTGCATAGTCT+TGG 0.429056 3.2:-20079191 None:intergenic
GCCTCGACTGTGCCATGTAT+TGG 0.429953 3.2:+20081526 MS.gene60477:CDS
TGACATACCTTAATACCAAT+AGG 0.437142 3.2:-20080253 None:intergenic
TAATTGCAGTTGAGCGAAAT+GGG 0.439736 3.2:+20080227 MS.gene60477:intron
AGCCAAAATGGCTATGCAAA+TGG 0.441194 3.2:+20079273 MS.gene60477:CDS
GGATAATCTCCTGTTGTAAG+TGG 0.441211 3.2:-20079922 None:intergenic
AGAGCTGTTGATTTCATGTA+TGG 0.448211 3.2:+20079692 MS.gene60477:CDS
TTAATTGCAGTTGAGCGAAA+TGG 0.450417 3.2:+20080226 MS.gene60477:intron
ATATATTATAGGAAGATGTT+AGG 0.454055 3.2:+20078484 MS.gene60477:intron
TTTATGGATCCACTTACAAC+AGG 0.454541 3.2:+20079913 MS.gene60477:CDS
ACATGTGCAGGAAACTCAAA+AGG 0.455499 3.2:+20079592 MS.gene60477:intron
GAGCGAAATGGGAAACCTAT+TGG 0.456595 3.2:+20080238 MS.gene60477:CDS
TTATGCAGATTGCTTCTGAT+TGG 0.460654 3.2:+20080348 MS.gene60477:intron
TTTCAGTGATGTAAATCAAC+GGG 0.461224 3.2:-20080433 None:intergenic
AAAGGATTTATATTTGGAGC+AGG 0.463085 3.2:+20077714 MS.gene60477:CDS
GATCATCAAGGACATGAACT+TGG 0.463741 3.2:+20078506 MS.gene60477:CDS
TGTGTACAAGACAAAGTATC+AGG 0.470745 3.2:+20079416 MS.gene60477:CDS
CATACAGATTCTCCTTATCC+TGG 0.474985 3.2:+20078532 MS.gene60477:CDS
ACAATAGATGGAAAGCTTAG+TGG 0.487637 3.2:+20078699 MS.gene60477:intron
AAAAGCATGAGATCCCTTGT+TGG 0.489756 3.2:+20079946 MS.gene60477:CDS
AAACAATCTAAGCTACTCAT+TGG 0.490000 3.2:+20079994 MS.gene60477:CDS
GAGATTTGGAATGACATTTG+TGG 0.496815 3.2:+20080857 MS.gene60477:CDS
TTTGAAGGTGCAGCAAATGA+AGG 0.505148 3.2:+20077994 MS.gene60477:CDS
TACTCATCTTCTAAAACTTG+TGG 0.505778 3.2:-20078917 None:intergenic
ACGTCCAAGGATATTACATA+TGG 0.509867 3.2:+20080793 MS.gene60477:CDS
CAAAAGCAATTAGGCAGAGA+AGG 0.515479 3.2:-20077596 None:intergenic
ACTCATCTTCTAAAACTTGT+GGG 0.516161 3.2:-20078916 None:intergenic
TGGTAGAACACCAAGTATAT+GGG 0.523979 3.2:+20078017 MS.gene60477:CDS
TCAACATGTGATGTATCCTA+TGG 0.526790 3.2:+20081493 MS.gene60477:CDS
AGGACCATATGTAATATCCT+TGG 0.529150 3.2:-20080797 None:intergenic
CTTCGGCATGAGCTAGAAGT+TGG 0.529575 3.2:-20079386 None:intergenic
GTAATTAATTACCTGGTATG+AGG 0.530752 3.2:-20077742 None:intergenic
AATGTTAGGTATAAAACCAT+TGG 0.531626 3.2:+20078871 MS.gene60477:intron
CAATATTCTAGACCAGGATA+AGG 0.535004 3.2:-20078544 None:intergenic
AGCAGGATCTTCCTCATACC+AGG 0.542249 3.2:+20077731 MS.gene60477:CDS
AAAGAATCTGTCAAGTAGCT+AGG 0.542781 3.2:-20080093 None:intergenic
ACTTTCACCCATAAATATCC+AGG 0.543624 3.2:+20078042 MS.gene60477:CDS
CGAGGCAACCTCATCGCCAT+AGG 0.549309 3.2:-20081509 None:intergenic
AAACAAAGCCGACCAATACA+TGG 0.555705 3.2:-20081538 None:intergenic
TTGGTAATCTTGCTCCAACA+AGG 0.556284 3.2:-20079960 None:intergenic
ACGAGAAACTTTCTGCATTG+TGG 0.561392 3.2:+20080904 MS.gene60477:CDS
TGGTAATCTTGCTCCAACAA+GGG 0.565723 3.2:-20079959 None:intergenic
GCAAATGGACGAATGGCACC+AGG 0.570578 3.2:+20079288 MS.gene60477:CDS
GTAGTTGTGATATGAATCAA+TGG 0.572496 3.2:-20078214 None:intergenic
ATCGGTCCAAGAATCGCTCA+TGG 0.576413 3.2:+20080611 MS.gene60477:CDS
AATGAAGCAACATCAAGAAG+TGG 0.577727 3.2:-20077672 None:intergenic
AGTAGAAACAGTTTCCCCAA+AGG 0.582354 3.2:+20077696 MS.gene60477:CDS
GTGAAAGTATCCCATATACT+TGG 0.583793 3.2:-20078027 None:intergenic
CGACTGTGCCATGTATTGGT+CGG 0.585326 3.2:+20081530 MS.gene60477:CDS
TTAGAAACTCACACTATGAG+AGG 0.588123 3.2:-20078956 None:intergenic
GTACAGTGATCCTACACTAT+CGG 0.588636 3.2:+20080593 MS.gene60477:CDS
TGGCTATGCAAATGGACGAA+TGG 0.589653 3.2:+20079281 MS.gene60477:CDS
TGGTTGAATCCAAATTGCAC+CGG 0.596108 3.2:+20079324 MS.gene60477:CDS
AAATGTCATTCCAAATCTCA+CGG 0.598464 3.2:-20080853 None:intergenic
CTCCAAATATAAATCCTTTG+GGG 0.598486 3.2:-20077710 None:intergenic
CAAGTACCAGTTAGCTACCA+AGG 0.611246 3.2:-20079630 None:intergenic
AGTGGTGGCATAAATCAAGA+AGG 0.614322 3.2:+20078717 MS.gene60477:CDS
CTCGATCGCAGAATCACCAC+CGG 0.616082 3.2:-20079343 None:intergenic
ACTTGGCAATATTCTAGACC+AGG 0.618905 3.2:-20078550 None:intergenic
AGAAGATCACGAATTCCTCT+CGG 0.618923 3.2:-20080383 None:intergenic
GGGTTACTTTGAATGAACCA+TGG 0.621045 3.2:+20079244 MS.gene60477:CDS
AGGCAAGGTGCAAACGTCCA+AGG 0.624303 3.2:+20080780 MS.gene60477:intron
CTGTTGATTTCATGTATGGA+TGG 0.624632 3.2:+20079696 MS.gene60477:CDS
CCATTCAAAATTGTCGAACA+AGG 0.625604 3.2:-20080817 None:intergenic
TGGTTGTATGTTTATCCGAG+AGG 0.627108 3.2:+20080368 MS.gene60477:CDS
ACCAATACATGGCACAGTCG+AGG 0.628365 3.2:-20081527 None:intergenic
CATGTGCAGGAAACTCAAAA+GGG 0.633515 3.2:+20079593 MS.gene60477:intron
GGAAGATGTTAGGATCATCA+AGG 0.635711 3.2:+20078494 MS.gene60477:intron
GGGTGTAATAGGTATAACCT+TGG 0.642396 3.2:+20079613 MS.gene60477:CDS
TGATCTTCTGTTATACACCA+AGG 0.647502 3.2:+20080397 MS.gene60477:CDS
CACATGTTGAAGTACTCGAA+CGG 0.648764 3.2:-20081480 None:intergenic
TGATTCATATCACAACTACA+AGG 0.653125 3.2:+20078218 MS.gene60477:CDS
ATAGATGGAAAGCTTAGTGG+TGG 0.655536 3.2:+20078702 MS.gene60477:intron
GATTCTTGGACCGATAGTGT+AGG 0.670328 3.2:-20080603 None:intergenic
TTGAATCCAAATTGCACCGG+TGG 0.672179 3.2:+20079327 MS.gene60477:CDS
TCAGATTTGGAATATGAGAG+TGG 0.677541 3.2:-20079653 None:intergenic
GAAGGTGCAGCAAATGAAGG+TGG 0.681013 3.2:+20077997 MS.gene60477:CDS
AACCAACTAGAACAACGACC+TGG 0.698527 3.2:-20079306 None:intergenic
TGATGTATCCTATGGCGATG+AGG 0.701376 3.2:+20081501 MS.gene60477:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTGTTCATATATATTAT+AGG + chr3.2:20078473-20078492 MS.gene60477:intron 10.0%
!!! AAAAATAATTTTCATCTTAT+TGG + chr3.2:20078630-20078649 MS.gene60477:intron 10.0%
!!! TATTTTCTTAATAAAAAAAG+TGG + chr3.2:20078267-20078286 MS.gene60477:intron 10.0%
!!! TTAAATTTTATATATATACC+TGG - chr3.2:20078063-20078082 None:intergenic 10.0%
!! ACTAAATCTAATATAAAGTT+AGG - chr3.2:20080471-20080490 None:intergenic 15.0%
!! ATAAAATTGTCAATAATGTT+AGG + chr3.2:20078857-20078876 MS.gene60477:intron 15.0%
!! ATTTCTATCAATAAATAACT+AGG - chr3.2:20081269-20081288 None:intergenic 15.0%
!! TCTAAATTTCTCTTATAAAT+AGG + chr3.2:20079100-20079119 MS.gene60477:intron 15.0%
!! TTCTATTTAAAGACATTTAA+CGG + chr3.2:20079541-20079560 MS.gene60477:intron 15.0%
!! TTTATTGATAGAAATGTTAA+AGG + chr3.2:20081274-20081293 MS.gene60477:intron 15.0%
!!! AAAAAACATGTTTTCTAAAT+TGG + chr3.2:20081345-20081364 MS.gene60477:intron 15.0%
!!! AAAAATCATGGATTAATATT+AGG + chr3.2:20079793-20079812 MS.gene60477:intron 15.0%
!!! AATTCTTTCTATTTTAGTTA+TGG + chr3.2:20078364-20078383 MS.gene60477:intron 15.0%
!!! ATCAACTTTTGATTAATATT+TGG - chr3.2:20079883-20079902 None:intergenic 15.0%
!!! GATATATATTTTACTTCATT+CGG - chr3.2:20079127-20079146 None:intergenic 15.0%
!!! TTGATTCAATTTTATAATGA+AGG + chr3.2:20081122-20081141 MS.gene60477:intron 15.0%
!!! TTTATTTATGATTAGTTTGA+AGG + chr3.2:20077979-20077998 MS.gene60477:intron 15.0%
!!! TTTTAAAAAGCAAAAAATCA+TGG + chr3.2:20079781-20079800 MS.gene60477:intron 15.0%
!! AATGTCTCTTATAAATAAGA+CGG - chr3.2:20079019-20079038 None:intergenic 20.0%
!! AATTATTTACCTACAATAGA+TGG + chr3.2:20078687-20078706 MS.gene60477:intron 20.0%
!! ATATATACCTGGATATTTAT+GGG - chr3.2:20078052-20078071 None:intergenic 20.0%
!! ATATATTATAGGAAGATGTT+AGG + chr3.2:20078484-20078503 MS.gene60477:intron 20.0%
!! ATCATCAACAACAAAATATA+GGG - chr3.2:20078831-20078850 None:intergenic 20.0%
!! ATTACACTTACTTATATCTA+AGG + chr3.2:20078340-20078359 MS.gene60477:intron 20.0%
!! GTAATTTATCAAAACTTACT+TGG - chr3.2:20078570-20078589 None:intergenic 20.0%
!! TATATATACCTGGATATTTA+TGG - chr3.2:20078053-20078072 None:intergenic 20.0%
!! TATGGTTTATAAACATTTCT+AGG + chr3.2:20079818-20079837 MS.gene60477:intron 20.0%
!! TGATGTATCTGATTAAAAAT+TGG - chr3.2:20079069-20079088 None:intergenic 20.0%
!! TTACACTTACTTATATCTAA+GGG + chr3.2:20078341-20078360 MS.gene60477:intron 20.0%
!!! AAAATAAATCAAAAAGTGTG+AGG - chr3.2:20079738-20079757 None:intergenic 20.0%
!!! AAATAAATCAAAAAGTGTGA+GGG - chr3.2:20079737-20079756 None:intergenic 20.0%
!!! ATTGGTTCATTTGATTTTAT+TGG + chr3.2:20080012-20080031 MS.gene60477:CDS 20.0%
!!! CTCATTTTAAATCATCAAAT+TGG - chr3.2:20077769-20077788 None:intergenic 20.0%
!!! GTAATTTTGATATTGAGTTT+TGG + chr3.2:20078432-20078451 MS.gene60477:intron 20.0%
!!! TTCATTATTTTGTTCTAAAG+AGG + chr3.2:20081032-20081051 MS.gene60477:intron 20.0%
! AAAAGTCTAACAATTGTTTG+AGG - chr3.2:20079468-20079487 None:intergenic 25.0%
! AATGTTAGGTATAAAACCAT+TGG + chr3.2:20078871-20078890 MS.gene60477:intron 25.0%
! AATTGGAGTAATTAATTACC+TGG - chr3.2:20077752-20077771 None:intergenic 25.0%
! ATGTCTCTTATAAATAAGAC+GGG - chr3.2:20079018-20079037 None:intergenic 25.0%
! CAATTTCATCAATGAGTTAT+TGG + chr3.2:20078755-20078774 MS.gene60477:CDS 25.0%
! CATCATCAACAACAAAATAT+AGG - chr3.2:20078832-20078851 None:intergenic 25.0%
! GATAATATAGATGACGATAA+TGG - chr3.2:20080656-20080675 None:intergenic 25.0%
! GATATGGTTAAATGAATTTG+TGG + chr3.2:20079856-20079875 MS.gene60477:intron 25.0%
! TAGAAATGTTAAAGGATACA+AGG + chr3.2:20081282-20081301 MS.gene60477:intron 25.0%
! TAGAACATCGTTAAATTGAT+TGG - chr3.2:20080737-20080756 None:intergenic 25.0%
! TATTTATATGTAACATGTGC+AGG + chr3.2:20079580-20079599 MS.gene60477:intron 25.0%
! TTGATTTACATCACTGAAAA+TGG + chr3.2:20080437-20080456 MS.gene60477:CDS 25.0%
!! ATCAAAAGTTGATTGATTAC+AGG + chr3.2:20079890-20079909 MS.gene60477:intron 25.0%
!! ATGGATTAATATTAGGACTA+TGG + chr3.2:20079800-20079819 MS.gene60477:intron 25.0%
!! GTCATATATTTTTCGTGATA+TGG + chr3.2:20079840-20079859 MS.gene60477:intron 25.0%
!! TTGCATATCTTTTCTATTTG+TGG + chr3.2:20080203-20080222 MS.gene60477:intron 25.0%
!! TTTCTTTAACTTTCGTATGA+TGG - chr3.2:20081230-20081249 None:intergenic 25.0%
!! TTTTCAGTGATGTAAATCAA+CGG - chr3.2:20080437-20080456 None:intergenic 25.0%
!!! GATTGTTTTGCATTGAATTT+TGG - chr3.2:20079982-20080001 None:intergenic 25.0%
!!! TGGAAATCTTTTCTGAAAAA+TGG - chr3.2:20079174-20079193 None:intergenic 25.0%
AAACAATCTAAGCTACTCAT+TGG + chr3.2:20079994-20080013 MS.gene60477:CDS 30.0%
AAATGTCATTCCAAATCTCA+CGG - chr3.2:20080856-20080875 None:intergenic 30.0%
AGTAGATGATTTATCGACAA+CGG + chr3.2:20079507-20079526 MS.gene60477:intron 30.0%
CTCCAAATATAAATCCTTTG+GGG - chr3.2:20077713-20077732 None:intergenic 30.0%
CTGTCATACATAAAGGAAAA+TGG - chr3.2:20080762-20080781 None:intergenic 30.0%
GCTCCAAATATAAATCCTTT+GGG - chr3.2:20077714-20077733 None:intergenic 30.0%
GTAATTAATTACCTGGTATG+AGG - chr3.2:20077745-20077764 None:intergenic 30.0%
GTAGTTGTGATATGAATCAA+TGG - chr3.2:20078217-20078236 None:intergenic 30.0%
GTTGATTGATTACAGGTTTA+TGG + chr3.2:20079897-20079916 MS.gene60477:intron 30.0%
TAGTAAGAGAACTCATAGAA+TGG - chr3.2:20080151-20080170 None:intergenic 30.0%
TAGTCTCTTACATCTCTAAA+AGG + chr3.2:20080697-20080716 MS.gene60477:intron 30.0%
TGACATACCTTAATACCAAT+AGG - chr3.2:20080256-20080275 None:intergenic 30.0%
TGATTCATATCACAACTACA+AGG + chr3.2:20078218-20078237 MS.gene60477:CDS 30.0%
TGCTCCAAATATAAATCCTT+TGG - chr3.2:20077715-20077734 None:intergenic 30.0%
TTCCCCAAAGGATTTATATT+TGG + chr3.2:20077708-20077727 MS.gene60477:CDS 30.0%
TTTCAGTGATGTAAATCAAC+GGG - chr3.2:20080436-20080455 None:intergenic 30.0%
! AAAGGATTTATATTTGGAGC+AGG + chr3.2:20077714-20077733 MS.gene60477:CDS 30.0%
! ACATTTGTGGATTACAAGAA+TGG + chr3.2:20080870-20080889 MS.gene60477:CDS 30.0%
! ATCAATGAGTTATTGGCTAA+TGG + chr3.2:20078762-20078781 MS.gene60477:CDS 30.0%
! CATTTTCCTTTATGTATGAC+AGG + chr3.2:20080760-20080779 MS.gene60477:intron 30.0%
! GAAATTAGTTTCTTACATGC+AGG - chr3.2:20080126-20080145 None:intergenic 30.0%
!! ACTCATCTTCTAAAACTTGT+GGG - chr3.2:20078919-20078938 None:intergenic 30.0%
!! ATTGGTGACTCTTTTTCATT+GGG + chr3.2:20078889-20078908 MS.gene60477:CDS 30.0%
!! TACTCATCTTCTAAAACTTG+TGG - chr3.2:20078920-20078939 None:intergenic 30.0%
!! TCCATTTTTCATTCCCTTTT+CGG - chr3.2:20081068-20081087 None:intergenic 30.0%
!!! CAAGTTTTAGAAGATGAGTA+TGG + chr3.2:20078920-20078939 MS.gene60477:CDS 30.0%
AAAGAATCTGTCAAGTAGCT+AGG - chr3.2:20080096-20080115 None:intergenic 35.0%
AATGAAGCAACATCAAGAAG+TGG - chr3.2:20077675-20077694 None:intergenic 35.0%
ACAATAGATGGAAAGCTTAG+TGG + chr3.2:20078699-20078718 MS.gene60477:intron 35.0%
ACCGAAAAGGGAATGAAAAA+TGG + chr3.2:20081064-20081083 MS.gene60477:intron 35.0%
ACGTCCAAGGATATTACATA+TGG + chr3.2:20080793-20080812 MS.gene60477:CDS 35.0%
ACTTTCACCCATAAATATCC+AGG + chr3.2:20078042-20078061 MS.gene60477:CDS 35.0%
AGGACCATATGTAATATCCT+TGG - chr3.2:20080800-20080819 None:intergenic 35.0%
CAATATTCTAGACCAGGATA+AGG - chr3.2:20078547-20078566 None:intergenic 35.0%
CAATGAAAAAGAGTCACCAA+TGG - chr3.2:20078890-20078909 None:intergenic 35.0%
CAGCAAAATCGTTAGAAGAA+AGG - chr3.2:20080285-20080304 None:intergenic 35.0%
CATGAAATCAACAGCTCTTT+CGG - chr3.2:20079690-20079709 None:intergenic 35.0%
CCATTCAAAATTGTCGAACA+AGG - chr3.2:20080820-20080839 None:intergenic 35.0%
CTAAGCTTTCCATCTATTGT+AGG - chr3.2:20078699-20078718 None:intergenic 35.0%
CTATGCAGAACTTTGCTTTA+AGG + chr3.2:20079197-20079216 MS.gene60477:CDS 35.0%
CTCTTATAAATAAGACGGGA+GGG - chr3.2:20079014-20079033 None:intergenic 35.0%
CTTTGTCTTGTACACATTGA+CGG - chr3.2:20079412-20079431 None:intergenic 35.0%
GGTCTAGCATTGCTTAAAAA+AGG - chr3.2:20080075-20080094 None:intergenic 35.0%
TAATTGCAGTTGAGCGAAAT+GGG + chr3.2:20080227-20080246 MS.gene60477:intron 35.0%
TAGCTACTTGACAGATTCTT+TGG + chr3.2:20080095-20080114 MS.gene60477:CDS 35.0%
TCAACATGTGATGTATCCTA+TGG + chr3.2:20081493-20081512 MS.gene60477:CDS 35.0%
TCTCTTATAAATAAGACGGG+AGG - chr3.2:20079015-20079034 None:intergenic 35.0%
TGATCTTCTGTTATACACCA+AGG + chr3.2:20080397-20080416 MS.gene60477:CDS 35.0%
TGGGAAACCTATTGGTATTA+AGG + chr3.2:20080246-20080265 MS.gene60477:CDS 35.0%
TGGTAGAACACCAAGTATAT+GGG + chr3.2:20078017-20078036 MS.gene60477:CDS 35.0%
TGGTGATAGGGTGAAATATT+GGG + chr3.2:20079224-20079243 MS.gene60477:CDS 35.0%
TTAATTGCAGTTGAGCGAAA+TGG + chr3.2:20080226-20080245 MS.gene60477:intron 35.0%
TTAGAAACTCACACTATGAG+AGG - chr3.2:20078959-20078978 None:intergenic 35.0%
TTATGCAGATTGCTTCTGAT+TGG + chr3.2:20080348-20080367 MS.gene60477:intron 35.0%
TTTATGGATCCACTTACAAC+AGG + chr3.2:20079913-20079932 MS.gene60477:CDS 35.0%
! CCTTGTTCGACAATTTTGAA+TGG + chr3.2:20080817-20080836 MS.gene60477:CDS 35.0%
! CTTTAAGGAGTTTGGTGATA+GGG + chr3.2:20079212-20079231 MS.gene60477:CDS 35.0%
! CTTTCTTCTAACGATTTTGC+TGG + chr3.2:20080283-20080302 MS.gene60477:intron 35.0%
! GAAACTCAAAAGGGTGTAAT+AGG + chr3.2:20079602-20079621 MS.gene60477:CDS 35.0%
! GAGATTTGGAATGACATTTG+TGG + chr3.2:20080857-20080876 MS.gene60477:CDS 35.0%
! TCAGATTTGGAATATGAGAG+TGG - chr3.2:20079656-20079675 None:intergenic 35.0%
! TGTGTACAAGACAAAGTATC+AGG + chr3.2:20079416-20079435 MS.gene60477:CDS 35.0%
! TTGGTGATAGGGTGAAATAT+TGG + chr3.2:20079223-20079242 MS.gene60477:CDS 35.0%
!! AGAGCTGTTGATTTCATGTA+TGG + chr3.2:20079692-20079711 MS.gene60477:CDS 35.0%
!! CATTGGTGACTCTTTTTCAT+TGG + chr3.2:20078888-20078907 MS.gene60477:CDS 35.0%
!! CTGTTGATTTCATGTATGGA+TGG + chr3.2:20079696-20079715 MS.gene60477:CDS 35.0%
!! GAACTTTGCTTTAAGGAGTT+TGG + chr3.2:20079204-20079223 MS.gene60477:CDS 35.0%
!! GTGAAAGTATCCCATATACT+TGG - chr3.2:20078030-20078049 None:intergenic 35.0%
!!! GTTTTAGAAGATGAGTATGG+TGG + chr3.2:20078923-20078942 MS.gene60477:CDS 35.0%
AAACAAAGCCGACCAATACA+TGG - chr3.2:20081541-20081560 None:intergenic 40.0%
AAACAATACTCCCCTCATGT+TGG + chr3.2:20081434-20081453 MS.gene60477:intron 40.0%
AAGGTATACCTTCCAACATG+AGG - chr3.2:20081449-20081468 None:intergenic 40.0%
ACATGTGCAGGAAACTCAAA+AGG + chr3.2:20079592-20079611 MS.gene60477:intron 40.0%
ACCTTGCCTGTCATACATAA+AGG - chr3.2:20080769-20080788 None:intergenic 40.0%
ACGAGAAACTTTCTGCATTG+TGG + chr3.2:20080904-20080923 MS.gene60477:CDS 40.0%
ACTTGGCAATATTCTAGACC+AGG - chr3.2:20078553-20078572 None:intergenic 40.0%
AGAAGATCACGAATTCCTCT+CGG - chr3.2:20080386-20080405 None:intergenic 40.0%
AGCAAAGTTCTGCATAGTCT+TGG - chr3.2:20079194-20079213 None:intergenic 40.0%
AGCCAAAATGGCTATGCAAA+TGG + chr3.2:20079273-20079292 MS.gene60477:CDS 40.0%
AGGTATACCTTCCAACATGA+GGG - chr3.2:20081448-20081467 None:intergenic 40.0%
AGGTCCTATTCAACCGAAAA+GGG + chr3.2:20081052-20081071 MS.gene60477:intron 40.0%
AGTAGAAACAGTTTCCCCAA+AGG + chr3.2:20077696-20077715 MS.gene60477:CDS 40.0%
AGTGGTGGCATAAATCAAGA+AGG + chr3.2:20078717-20078736 MS.gene60477:CDS 40.0%
ATAGATGGAAAGCTTAGTGG+TGG + chr3.2:20078702-20078721 MS.gene60477:intron 40.0%
CAAAAGCAATTAGGCAGAGA+AGG - chr3.2:20077599-20077618 None:intergenic 40.0%
CATACAGATTCTCCTTATCC+TGG + chr3.2:20078532-20078551 MS.gene60477:CDS 40.0%
CATGTGCAGGAAACTCAAAA+GGG + chr3.2:20079593-20079612 MS.gene60477:intron 40.0%
CCATGGAGTTATAGCCAAAA+TGG + chr3.2:20079261-20079280 MS.gene60477:CDS 40.0%
GACGTGCATACTTCACTTAT+AGG + chr3.2:20080561-20080580 MS.gene60477:intron 40.0%
GATCATCAAGGACATGAACT+TGG + chr3.2:20078506-20078525 MS.gene60477:CDS 40.0%
GCACAAGTGCAAAAGCAATT+AGG - chr3.2:20077608-20077627 None:intergenic 40.0%
GGAAGATGTTAGGATCATCA+AGG + chr3.2:20078494-20078513 MS.gene60477:intron 40.0%
GGATAATCTCCTGTTGTAAG+TGG - chr3.2:20079925-20079944 None:intergenic 40.0%
GGGTGTAATAGGTATAACCT+TGG + chr3.2:20079613-20079632 MS.gene60477:CDS 40.0%
GTACAGTGATCCTACACTAT+CGG + chr3.2:20080593-20080612 MS.gene60477:CDS 40.0%
GTGGTAGAACACCAAGTATA+TGG + chr3.2:20078016-20078035 MS.gene60477:CDS 40.0%
TCCTTTATGTATGACAGGCA+AGG + chr3.2:20080765-20080784 MS.gene60477:intron 40.0%
TGGTAATCTTGCTCCAACAA+GGG - chr3.2:20079962-20079981 None:intergenic 40.0%
TGGTTGAATCCAAATTGCAC+CGG + chr3.2:20079324-20079343 MS.gene60477:CDS 40.0%
TGGTTGTATGTTTATCCGAG+AGG + chr3.2:20080368-20080387 MS.gene60477:CDS 40.0%
! AAAAGCATGAGATCCCTTGT+TGG + chr3.2:20079946-20079965 MS.gene60477:CDS 40.0%
! ACAAGGGATCTCATGCTTTT+TGG - chr3.2:20079946-20079965 None:intergenic 40.0%
! CACATGTTGAAGTACTCGAA+CGG - chr3.2:20081483-20081502 None:intergenic 40.0%
! CATTCCCTTTTCGGTTGAAT+AGG - chr3.2:20081059-20081078 None:intergenic 40.0%
! CGACAATTTTGAATGGTGCT+CGG + chr3.2:20080824-20080843 MS.gene60477:CDS 40.0%
! CGGGTTATTGTACTTTTCCT+TGG - chr3.2:20080417-20080436 None:intergenic 40.0%
! GACAATTTTGAATGGTGCTC+GGG + chr3.2:20080825-20080844 MS.gene60477:CDS 40.0%
! GCTTAAAAAAGGTGCATCTG+AGG - chr3.2:20080064-20080083 None:intergenic 40.0%
! GGGTTACTTTGAATGAACCA+TGG + chr3.2:20079244-20079263 MS.gene60477:CDS 40.0%
! GTATAACCTTGGTAGCTAAC+TGG + chr3.2:20079624-20079643 MS.gene60477:CDS 40.0%
! GTCCATTTGCATAGCCATTT+TGG - chr3.2:20079278-20079297 None:intergenic 40.0%
! TGGTAGTGCGTGACAATATA+GGG - chr3.2:20079369-20079388 None:intergenic 40.0%
! TTGGTAATCTTGCTCCAACA+AGG - chr3.2:20079963-20079982 None:intergenic 40.0%
! TTTGAAGGTGCAGCAAATGA+AGG + chr3.2:20077994-20078013 MS.gene60477:CDS 40.0%
!! GCTTTAAGGAGTTTGGTGAT+AGG + chr3.2:20079211-20079230 MS.gene60477:CDS 40.0%
!! GTCGGCTTTGTTTACAGTAA+AGG + chr3.2:20081548-20081567 MS.gene60477:CDS 40.0%
!! TTGGTAGTGCGTGACAATAT+AGG - chr3.2:20079370-20079389 None:intergenic 40.0%
!!! CCATTTTGGCTATAACTCCA+TGG - chr3.2:20079264-20079283 None:intergenic 40.0%
AACCAACTAGAACAACGACC+TGG - chr3.2:20079309-20079328 None:intergenic 45.0%
AAGTACTCGAACGGAACACT+AGG - chr3.2:20081474-20081493 None:intergenic 45.0%
AAGTGTCCATGAGCGATTCT+TGG - chr3.2:20080620-20080639 None:intergenic 45.0%
AATACTCCCCTCATGTTGGA+AGG + chr3.2:20081438-20081457 MS.gene60477:intron 45.0%
CAAGTACCAGTTAGCTACCA+AGG - chr3.2:20079633-20079652 None:intergenic 45.0%
CTTGTACACATTGACGGCTT+CGG - chr3.2:20079406-20079425 None:intergenic 45.0%
GAGCGAAATGGGAAACCTAT+TGG + chr3.2:20080238-20080257 MS.gene60477:CDS 45.0%
GAGGTCCTATTCAACCGAAA+AGG + chr3.2:20081051-20081070 MS.gene60477:intron 45.0%
GATTCTTGGACCGATAGTGT+AGG - chr3.2:20080606-20080625 None:intergenic 45.0%
GGCAGCTTTCTGATCAGATT+TGG - chr3.2:20079669-20079688 None:intergenic 45.0%
GGTATACCTTCCAACATGAG+GGG - chr3.2:20081447-20081466 None:intergenic 45.0%
TCGGGTTATTCCGTGAGATT+TGG + chr3.2:20080843-20080862 MS.gene60477:CDS 45.0%
TGATGTATCCTATGGCGATG+AGG + chr3.2:20081501-20081520 MS.gene60477:CDS 45.0%
TGGCTATGCAAATGGACGAA+TGG + chr3.2:20079281-20079300 MS.gene60477:CDS 45.0%
TTGAATCCAAATTGCACCGG+TGG + chr3.2:20079327-20079346 MS.gene60477:CDS 45.0%
!!! TTTTTTTTTTTTTTTTTGAA+AGG - chr3.2:20078615-20078634 None:intergenic 5.0%
ACCAATACATGGCACAGTCG+AGG - chr3.2:20081530-20081549 None:intergenic 50.0%
AGCAGGATCTTCCTCATACC+AGG + chr3.2:20077731-20077750 MS.gene60477:CDS 50.0%
ATCGGTCCAAGAATCGCTCA+TGG + chr3.2:20080611-20080630 MS.gene60477:CDS 50.0%
CACCAGGTCGTTGTTCTAGT+TGG + chr3.2:20079304-20079323 MS.gene60477:CDS 50.0%
CTTCGGCATGAGCTAGAAGT+TGG - chr3.2:20079389-20079408 None:intergenic 50.0%
GAATCACCACCGGTGCAATT+TGG - chr3.2:20079336-20079355 None:intergenic 50.0%
TCGAACGGAACACTAGGACA+AGG - chr3.2:20081468-20081487 None:intergenic 50.0%
! CGACTGTGCCATGTATTGGT+CGG + chr3.2:20081530-20081549 MS.gene60477:CDS 50.0%
! GAAGGTGCAGCAAATGAAGG+TGG + chr3.2:20077997-20078016 MS.gene60477:CDS 50.0%
AGGCAAGGTGCAAACGTCCA+AGG + chr3.2:20080780-20080799 MS.gene60477:intron 55.0%
CTCGATCGCAGAATCACCAC+CGG - chr3.2:20079346-20079365 None:intergenic 55.0%
GCAAATGGACGAATGGCACC+AGG + chr3.2:20079288-20079307 MS.gene60477:CDS 55.0%
GCCTCGACTGTGCCATGTAT+TGG + chr3.2:20081526-20081545 MS.gene60477:CDS 55.0%
CGAGGCAACCTCATCGCCAT+AGG - chr3.2:20081512-20081531 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 20077582 20081580 20077582 ID=MS.gene60477
chr3.2 mRNA 20077582 20081580 20077582 ID=MS.gene60477.t1;Parent=MS.gene60477
chr3.2 exon 20077582 20077752 20077582 ID=MS.gene60477.t1.exon1;Parent=MS.gene60477.t1
chr3.2 CDS 20077582 20077752 20077582 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20077994 20078063 20077994 ID=MS.gene60477.t1.exon2;Parent=MS.gene60477.t1
chr3.2 CDS 20077994 20078063 20077994 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20078181 20078239 20078181 ID=MS.gene60477.t1.exon3;Parent=MS.gene60477.t1
chr3.2 CDS 20078181 20078239 20078181 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20078495 20078570 20078495 ID=MS.gene60477.t1.exon4;Parent=MS.gene60477.t1
chr3.2 CDS 20078495 20078570 20078495 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20078706 20078783 20078706 ID=MS.gene60477.t1.exon5;Parent=MS.gene60477.t1
chr3.2 CDS 20078706 20078783 20078706 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20078879 20078966 20078879 ID=MS.gene60477.t1.exon6;Parent=MS.gene60477.t1
chr3.2 CDS 20078879 20078966 20078879 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20079182 20079437 20079182 ID=MS.gene60477.t1.exon7;Parent=MS.gene60477.t1
chr3.2 CDS 20079182 20079437 20079182 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20079602 20079717 20079602 ID=MS.gene60477.t1.exon8;Parent=MS.gene60477.t1
chr3.2 CDS 20079602 20079717 20079602 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20079912 20080129 20079912 ID=MS.gene60477.t1.exon9;Parent=MS.gene60477.t1
chr3.2 CDS 20079912 20080129 20079912 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20080236 20080267 20080236 ID=MS.gene60477.t1.exon10;Parent=MS.gene60477.t1
chr3.2 CDS 20080236 20080267 20080236 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20080356 20080458 20080356 ID=MS.gene60477.t1.exon11;Parent=MS.gene60477.t1
chr3.2 CDS 20080356 20080458 20080356 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20080583 20080691 20080583 ID=MS.gene60477.t1.exon12;Parent=MS.gene60477.t1
chr3.2 CDS 20080583 20080691 20080583 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20080782 20080968 20080782 ID=MS.gene60477.t1.exon13;Parent=MS.gene60477.t1
chr3.2 CDS 20080782 20080968 20080782 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
chr3.2 exon 20081476 20081580 20081476 ID=MS.gene60477.t1.exon14;Parent=MS.gene60477.t1
chr3.2 CDS 20081476 20081580 20081476 ID=cds.MS.gene60477.t1;Parent=MS.gene60477.t1
Gene Sequence

>MS.gene60477

ATGGCATTCAATTACCTTCTCTGCCTAATTGCTTTTGCACTTGTGCTTAGCAAAACAAATGTCAATTGCATTGAAACTATTGAAGTTGATCCACTTCTTGATGTTGCTTCATTGAGTAGAAACAGTTTCCCCAAAGGATTTATATTTGGAGCAGGATCTTCCTCATACCAGGTAATTAATTACTCCAATTTGATGATTTAAAATGAGTTCTAATACAACAAACTTAGAAACTAAAATTAAAAGAAATTCTTACTAGATTTAGTGAGAAAATTAAATAATTTTTTCTAATAATATATGATATATCAAAGCAATTTTTTTAAAAAAATAATAATAATTTTACATATTATATAAACATATAATCTTGATTATATATTGTGTGTTTCTGACATGAATGTAATTTATTTATGATTAGTTTGAAGGTGCAGCAAATGAAGGTGGTAGAACACCAAGTATATGGGATACTTTCACCCATAAATATCCAGGTATATATATAAAATTTAAATTTTTCTTTTCTTATTACTAAAGATTTACAATTTTCAATTTGATATTTTTCATGTGCATAATAATTTACAATTTGTGCAACTTTAATTGACATGCAGAAAAGATCAAAGATAGAAGCAATGCAGATGTAGCCATTGATTCATATCACAACTACAAGGTAAACTAGCTTCAAAGTATATATTTGTATTTTCTTAATAAAAAAAGTGGAATCTAAAATTTAAGTAATTGAATAATAAATTACGAGATGAATAAAATGCATTACACTTACTTATATCTAAGGGAATTCTTTCTATTTTAGTTATGGAGTGTAAAGTTATAAAGAAAAGTAATGAATAAAAATTAAATAAAAGTAATTTTGATATTGAGTTTTGGTGAAATAAAATAATTAATATATTGTTCATATATATTATAGGAAGATGTTAGGATCATCAAGGACATGAACTTGGATTCATACAGATTCTCCTTATCCTGGTCTAGAATATTGCCAAGTAAGTTTTGATAAATTACTTTTCTAAACTAATTTTCATCTCCTTTCAAAAAAAAAAAAAAAAATAATTTTCATCTTATTGGAAGTTTCAATTTAATTAACAATTTAATTTTTTTTAATTATTTACCTACAATAGATGGAAAGCTTAGTGGTGGCATAAATCAAGAAGGAATCAACTATTACAACAATTTCATCAATGAGTTATTGGCTAATGGTAAGATCTTGAAATTCAATGTTTATTTCAATTTGACTATATTACCCTATATTTTGTTGTTGATGATGATCATATAAAATTGTCAATAATGTTAGGTATAAAACCATTGGTGACTCTTTTTCATTGGGATCTCCCACAAGTTTTAGAAGATGAGTATGGTGGCTTCTTAAGTCCTCTCATAGTGTGAGTTTCTAAAACAATAGCTTAATGTTTTCTTAGAAAATACTCCCTCCCGTCTTATTTATAAGAGACATTTGTGTCAACAAAAGTTGATGTATTGATCCAATTTTTAATCAGATACATCAATTTTTGTTGATCTAAATTTCTCTTATAAATAGGACCGAATGAAGTAAAATATATATCAAGATATGATTGTAACTTTTGTTACCATTTTTCAGAAAAGATTTCCAAGACTATGCAGAACTTTGCTTTAAGGAGTTTGGTGATAGGGTGAAATATTGGGTTACTTTGAATGAACCATGGAGTTATAGCCAAAATGGCTATGCAAATGGACGAATGGCACCAGGTCGTTGTTCTAGTTGGTTGAATCCAAATTGCACCGGTGGTGATTCTGCGATCGAGCCCTATATTGTCACGCACTACCAACTTCTAGCTCATGCCGAAGCCGTCAATGTGTACAAGACAAAGTATCAGGTATGTTACTTTGTTGATAATCTTATACCTCAAACAATTGTTAGACTTTTGTCATATAAAGTATCAATGAGTAGATGATTTATCGACAACGGTTTCTTTATATTTCTATTTAAAGACATTTAACGGTAACAAAAAACTAAAATATTTATATGTAACATGTGCAGGAAACTCAAAAGGGTGTAATAGGTATAACCTTGGTAGCTAACTGGTACTTGCCACTCTCATATTCCAAATCTGATCAGAAAGCTGCCGAAAGAGCTGTTGATTTCATGTATGGATGGTAAGAGCTTCTCTTTCCCTCACACTTTTTGATTTATTTTCAAAATGTAAATACATATTTTGATTTTAAAAAGCAAAAAATCATGGATTAATATTAGGACTATGGTTTATAAACATTTCTAGGTCATATATTTTTCGTGATATGGTTAAATGAATTTGTGGACCAAATATTAATCAAAAGTTGATTGATTACAGGTTTATGGATCCACTTACAACAGGAGATTATCCAAAAAGCATGAGATCCCTTGTTGGAGCAAGATTACCAAAATTCAATGCAAAACAATCTAAGCTACTCATTGGTTCATTTGATTTTATTGGTTTGAACTATTATTCTTCAACATATGCCTCAGATGCACCTTTTTTAAGCAATGCTAGACCTAGCTACTTGACAGATTCTTTGGTTAATCCTGCATGTAAGAAACTAATTTCTACCATTCTATGAGTTCTCTTACTATTTATATACATTGAGTTTAAAGATTTTGACATTTGCATATCTTTTCTATTTGTGGTTAATTGCAGTTGAGCGAAATGGGAAACCTATTGGTATTAAGGTATGTCATATCGACCTTTCTTCTAACGATTTTGCTGGTTTGATTCGTTTCTAAAATATAAAACTAATGTGCTTCGATAATTATGCAGATTGCTTCTGATTGGTTGTATGTTTATCCGAGAGGAATTCGTGATCTTCTGTTATACACCAAGGAAAAGTACAATAACCCGTTGATTTACATCACTGAAAATGGTAATAGCACCTAACTTTATATTAGATTTAGTTTGCTTAAATGTAGCATTGTACATCTTTATGTGATTTTGAAACTTGTTGAATCAAAGATGTATGACAATTGACGTGCATACTTCACTTATAGGTATTAACGAGTACAGTGATCCTACACTATCGGTCCAAGAATCGCTCATGGACACTTTTCGAATTGATTACCATTATCGTCATCTATATTATCTTCGATCTGCAATTGAGTAAGTAGTCTCTTACATCTCTAAAAGGTTTCTCTATTTTCGCCAATCAATTTAACGATGTTCTAAACCATTTTCCTTTATGTATGACAGGCAAGGTGCAAACGTCCAAGGATATTACATATGGTCCTTGTTCGACAATTTTGAATGGTGCTCGGGTTATTCCGTGAGATTTGGAATGACATTTGTGGATTACAAGAATGGTTTGAAAAGATACGAGAAACTTTCTGCATTGTGGTTCAAGAATTTTCTCAGAAAAGAAACTAAACTTATGTTTCTTGTGAGAAAAGTTATGAGTTTTATTCATTAAAAAATTTATTTGTAAATATTTATTTATTCTTTATTCATTATTTTGTTCTAAAGAGGTCCTATTCAACCGAAAAGGGAATGAAAAATGGATGTGTAGATATACTGATCTTGTAAGTTGTTACTATTGATTCAATTTTATAATGAAGGAAAATTATAGTTGTTATGATAAATATATGAATTACTGTTATCTATATTCATATTTGATTAACTTTTCGTCTTATAATTTTTTCCATCATACGAAAGTTAAAGAAACTACAACTTATTATGTCCTAGTTATTTATTGATAGAAATGTTAAAGGATACAAGGAACTACAAATACTATAAATGAATCATTTGATGATGTTAAAAAAAAACATGTTTTCTAAATTGGTTGAGAGTTGAGACTGCAAAATGCATTTTTCATTATGATCAACTGAATTGTACAACAATTACTCTTAAACAATACTCCCCTCATGTTGGAAGGTATACCTTGTCCTAGTGTTCCGTTCGAGTACTTCAACATGTGATGTATCCTATGGCGATGAGGTTGCCTCGACTGTGCCATGTATTGGTCGGCTTTGTTTACAGTAAAGGAAATGTCTGA

Protein sequence

>MS.gene60477.t1

MAFNYLLCLIAFALVLSKTNVNCIETIEVDPLLDVASLSRNSFPKGFIFGAGSSSYQFEGAANEGGRTPSIWDTFTHKYPEKIKDRSNADVAIDSYHNYKEDVRIIKDMNLDSYRFSLSWSRILPNGKLSGGINQEGINYYNNFINELLANGIKPLVTLFHWDLPQVLEDEYGGFLSPLIVKDFQDYAELCFKEFGDRVKYWVTLNEPWSYSQNGYANGRMAPGRCSSWLNPNCTGGDSAIEPYIVTHYQLLAHAEAVNVYKTKYQETQKGVIGITLVANWYLPLSYSKSDQKAAERAVDFMYGWFMDPLTTGDYPKSMRSLVGARLPKFNAKQSKLLIGSFDFIGLNYYSSTYASDAPFLSNARPSYLTDSLVNPAFERNGKPIGIKIASDWLYVYPRGIRDLLLYTKEKYNNPLIYITENGINEYSDPTLSVQESLMDTFRIDYHYRHLYYLRSAIEQGANVQGYYIWSLFDNFEWCSGYSVRFGMTFVDYKNGLKRYEKLSALWFKNFLRKETKLMFLCSVRVLQHVMYPMAMRLPRLCHVLVGFVYSKGNV