Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043801.t1 | XP_003595788.1 | 96.7 | 246 | 2 | 1 | 1 | 240 | 1 | 246 | 1.40E-129 | 472.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043801.t1 | O48551 | 90.7 | 246 | 17 | 1 | 1 | 240 | 1 | 246 | 4.4e-124 | 445.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043801.t1 | G7IJ13 | 96.7 | 246 | 2 | 1 | 1 | 240 | 1 | 246 | 1.0e-129 | 472.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043801.t1 | MTR_2g060830 | 96.748 | 246 | 2 | 1 | 1 | 240 | 1 | 246 | 5.94e-179 | 491 |
MS.gene043801.t1 | MTR_8g464460 | 90.650 | 246 | 17 | 1 | 1 | 240 | 1 | 246 | 5.22e-168 | 463 |
MS.gene043801.t1 | MTR_0167s0060 | 37.229 | 231 | 134 | 5 | 9 | 233 | 6 | 231 | 1.15e-46 | 155 |
MS.gene043801.t1 | MTR_8g075320 | 38.095 | 231 | 125 | 8 | 9 | 230 | 4 | 225 | 5.42e-37 | 130 |
MS.gene043801.t1 | MTR_7g070070 | 36.134 | 238 | 134 | 7 | 9 | 233 | 5 | 237 | 7.58e-37 | 130 |
MS.gene043801.t1 | MTR_5g016590 | 35.294 | 238 | 136 | 7 | 9 | 233 | 5 | 237 | 8.65e-36 | 127 |
MS.gene043801.t1 | MTR_2g016050 | 37.054 | 224 | 123 | 6 | 1 | 217 | 1 | 213 | 1.48e-35 | 127 |
MS.gene043801.t1 | MTR_1g022410 | 32.609 | 230 | 143 | 6 | 9 | 231 | 6 | 230 | 1.05e-33 | 123 |
MS.gene043801.t1 | MTR_1g112250 | 30.736 | 231 | 144 | 6 | 9 | 230 | 8 | 231 | 1.86e-33 | 121 |
MS.gene043801.t1 | MTR_6g024135 | 36.875 | 160 | 96 | 3 | 6 | 162 | 5 | 162 | 7.39e-31 | 114 |
MS.gene043801.t1 | MTR_4g012740 | 26.119 | 268 | 148 | 8 | 9 | 231 | 237 | 499 | 8.86e-19 | 85.1 |
MS.gene043801.t1 | MTR_4g057090 | 24.878 | 205 | 134 | 5 | 25 | 214 | 98 | 297 | 9.97e-12 | 63.9 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene043801.t1 | AT5G35590 | 83.740 | 246 | 34 | 1 | 1 | 240 | 1 | 246 | 2.91e-159 | 441 |
MS.gene043801.t1 | AT2G05840 | 84.959 | 246 | 31 | 1 | 1 | 240 | 1 | 246 | 3.25e-159 | 441 |
MS.gene043801.t1 | AT2G05840 | 85.714 | 217 | 25 | 1 | 1 | 211 | 1 | 217 | 6.29e-142 | 396 |
MS.gene043801.t1 | AT2G05840 | 85.204 | 196 | 23 | 1 | 1 | 190 | 1 | 196 | 3.79e-127 | 358 |
MS.gene043801.t1 | AT1G16470 | 35.470 | 234 | 140 | 5 | 9 | 236 | 6 | 234 | 1.35e-43 | 147 |
MS.gene043801.t1 | AT1G16470 | 35.470 | 234 | 140 | 5 | 9 | 236 | 6 | 234 | 1.35e-43 | 147 |
MS.gene043801.t1 | AT1G79210 | 35.470 | 234 | 140 | 5 | 9 | 236 | 6 | 234 | 2.86e-43 | 146 |
MS.gene043801.t1 | AT1G79210 | 35.470 | 234 | 140 | 5 | 9 | 236 | 6 | 234 | 2.86e-43 | 146 |
MS.gene043801.t1 | AT1G79210 | 35.470 | 234 | 140 | 5 | 9 | 236 | 6 | 234 | 2.86e-43 | 146 |
MS.gene043801.t1 | AT5G66140 | 36.797 | 231 | 129 | 7 | 9 | 230 | 4 | 226 | 4.53e-39 | 136 |
MS.gene043801.t1 | AT3G51260 | 37.229 | 231 | 128 | 7 | 9 | 230 | 4 | 226 | 4.77e-39 | 136 |
MS.gene043801.t1 | AT3G51260 | 37.264 | 212 | 118 | 6 | 9 | 211 | 4 | 209 | 1.82e-36 | 129 |
MS.gene043801.t1 | AT1G53850 | 31.602 | 231 | 142 | 6 | 9 | 230 | 8 | 231 | 9.55e-35 | 124 |
MS.gene043801.t1 | AT1G53850 | 31.602 | 231 | 142 | 6 | 9 | 230 | 8 | 231 | 9.55e-35 | 124 |
MS.gene043801.t1 | AT3G14290 | 31.169 | 231 | 143 | 6 | 9 | 230 | 8 | 231 | 2.69e-34 | 123 |
MS.gene043801.t1 | AT3G22110 | 36.181 | 199 | 117 | 4 | 9 | 200 | 5 | 200 | 2.74e-34 | 124 |
MS.gene043801.t1 | AT1G47250 | 35.652 | 230 | 132 | 8 | 9 | 229 | 6 | 228 | 5.45e-34 | 123 |
MS.gene043801.t1 | AT5G42790 | 34.783 | 230 | 134 | 8 | 9 | 229 | 6 | 228 | 3.04e-33 | 121 |
MS.gene043801.t1 | AT2G27020 | 34.091 | 176 | 108 | 4 | 6 | 175 | 5 | 178 | 1.28e-28 | 108 |
MS.gene043801.t1 | AT2G27020 | 34.375 | 160 | 100 | 3 | 6 | 162 | 107 | 264 | 8.90e-28 | 108 |
MS.gene043801.t1 | AT4G15165 | 30.151 | 199 | 87 | 6 | 9 | 200 | 5 | 158 | 8.60e-19 | 82.0 |
Find 61 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GCTGAGTTTCGCCATAAATT+TGG | 0.187140 | 2.3:+32623729 | MS.gene043801:CDS |
CACTAAGTACCTTGGTTTAC+TGG | 0.207612 | 2.3:+32623079 | MS.gene043801:CDS |
GCATCTCATATCCAAATTTA+TGG | 0.224828 | 2.3:-32623740 | None:intergenic |
TCAAGAGGCAATTAATTTCT+TGG | 0.230260 | 2.3:+32626708 | MS.gene043801:CDS |
TTGGGAATTGATGACGAAAA+TGG | 0.280211 | 2.3:+32624594 | MS.gene043801:CDS |
TTGCGTCGTTACTCAGAAAA+AGG | 0.297194 | 2.3:+32622922 | MS.gene043801:CDS |
CTGTGGATGTGTTGGCTAAA+TGG | 0.320318 | 2.3:+32623763 | MS.gene043801:CDS |
GTTAACAGAGTATGCTTTCA+AGG | 0.381831 | 2.3:+32622847 | MS.gene043801:intron |
TACCTTGGTTTACTGGCAAC+TGG | 0.402138 | 2.3:+32623086 | MS.gene043801:CDS |
CTGCAAAGTTGCTATGGTCT+TGG | 0.414875 | 2.3:+32624575 | MS.gene043801:intron |
TTCAAGGCTGTTAAGGCCGC+AGG | 0.422354 | 2.3:+32622863 | MS.gene043801:CDS |
TACCTATGATGAGACAGTTC+AGG | 0.429803 | 2.3:+32626759 | MS.gene043801:CDS |
TTCATTGCAGGACAAGCTCT+TGG | 0.434795 | 2.3:+32623025 | MS.gene043801:intron |
TGCAAAGTTGCTATGGTCTT+GGG | 0.454919 | 2.3:+32624576 | MS.gene043801:intron |
GTGGACAAAACTCTAAATTC+TGG | 0.455023 | 2.3:-32629879 | None:intergenic |
TTCAGCTGATGCTAGGACAC+TGG | 0.456415 | 2.3:+32623683 | MS.gene043801:intron |
TGGGAATTGATGACGAAAAT+GGG | 0.457659 | 2.3:+32624595 | MS.gene043801:CDS |
GACCCTGCCGGGCATTACTT+TGG | 0.459387 | 2.3:+32624636 | MS.gene043801:CDS |
TGACCAAAGTAATGCCCGGC+AGG | 0.467216 | 2.3:-32624639 | None:intergenic |
GTCTCATCATAGGTAAATGA+AGG | 0.468541 | 2.3:-32626751 | None:intergenic |
GTATGCTTTCAAGGCTGTTA+AGG | 0.473677 | 2.3:+32622856 | MS.gene043801:CDS |
ACTTGAAAGAGACGCCCCTC+GGG | 0.475818 | 2.3:-32622268 | None:intergenic |
CTAGGTTGGAGTGGTGCAAA+AGG | 0.481357 | 2.3:+32629851 | MS.gene043801:intron |
GCCGCAGGGATAACCTCAAT+TGG | 0.487617 | 2.3:+32622878 | MS.gene043801:CDS |
TTTACAAATGTGACCCTGCC+GGG | 0.490064 | 2.3:+32624625 | MS.gene043801:CDS |
AACTCAATCGCGCTCGCTGA+TGG | 0.493385 | 2.3:-32629928 | None:intergenic |
TTTCCCATCACTAAGTACCT+TGG | 0.495984 | 2.3:+32623071 | MS.gene043801:CDS |
TACCTGAACTGTCTCATCAT+AGG | 0.502050 | 2.3:-32626761 | None:intergenic |
GTTTCCTCGGACACCAATTG+AGG | 0.514352 | 2.3:-32622891 | None:intergenic |
CTTTACAAATGTGACCCTGC+CGG | 0.517868 | 2.3:+32624624 | MS.gene043801:CDS |
TTACTGGCAACTGGCATGAC+AGG | 0.518842 | 2.3:+32623095 | MS.gene043801:CDS |
CACTTGAAAGAGACGCCCCT+CGG | 0.526275 | 2.3:-32622269 | None:intergenic |
CGAGGGGCGTCTCTTTCAAG+TGG | 0.535744 | 2.3:+32622270 | MS.gene043801:CDS |
ATGAGTCGAGGAAGTGGAGG+TGG | 0.536279 | 2.3:+32622217 | MS.gene043801:CDS |
CGCAAACAGAATCGTTTCCT+CGG | 0.548376 | 2.3:-32622904 | None:intergenic |
CTCTTGAAGAACTGATTGCA+TGG | 0.555134 | 2.3:-32627666 | None:intergenic |
TAAACCAAGGTACTTAGTGA+TGG | 0.555581 | 2.3:-32623075 | None:intergenic |
AAACCAAGGTACTTAGTGAT+GGG | 0.562271 | 2.3:-32623074 | None:intergenic |
CATTTAGCCAACACATCCAC+AGG | 0.565773 | 2.3:-32623762 | None:intergenic |
CATGCTTATATGAGACCACT+AGG | 0.569233 | 2.3:+32624412 | MS.gene043801:CDS |
CAAGTGCTCGTCGATTTCCT+CGG | 0.572807 | 2.3:-32629901 | None:intergenic |
CGGGCATTACTTTGGTCACA+AGG | 0.578471 | 2.3:+32624644 | MS.gene043801:CDS |
GGGTCACATTTGTAAAGTTG+AGG | 0.580213 | 2.3:-32624618 | None:intergenic |
CATGCAATCAGTTCTTCAAG+AGG | 0.585585 | 2.3:+32627667 | MS.gene043801:CDS |
ATTGTGCTGCAAAGTTGCTA+TGG | 0.590145 | 2.3:+32624569 | MS.gene043801:intron |
CTTGTGACCAAAGTAATGCC+CGG | 0.591715 | 2.3:-32624643 | None:intergenic |
TGAGATGCCTGTGGATGTGT+TGG | 0.595670 | 2.3:+32623755 | MS.gene043801:CDS |
TGCTGGATAGAAGGATCAAG+AGG | 0.604493 | 2.3:+32626693 | MS.gene043801:intron |
TATATGAGACCACTAGGAGT+AGG | 0.613786 | 2.3:+32624418 | MS.gene043801:CDS |
GACCAAAGTAATGCCCGGCA+GGG | 0.621604 | 2.3:-32624638 | None:intergenic |
AACATGAGTCGAGGAAGTGG+AGG | 0.628416 | 2.3:+32622214 | None:intergenic |
GTGCTCGTCGATTTCCTCGG+TGG | 0.630932 | 2.3:-32629898 | None:intergenic |
TCAAGGCTGTTAAGGCCGCA+GGG | 0.635784 | 2.3:+32622864 | MS.gene043801:CDS |
GAGGGGCGTCTCTTTCAAGT+GGG | 0.638985 | 2.3:+32622271 | MS.gene043801:CDS |
TCTCATCATAGGTAAATGAA+GGG | 0.646694 | 2.3:-32626750 | None:intergenic |
ATAACCTCAATTGGTGTCCG+AGG | 0.651433 | 2.3:+32622887 | MS.gene043801:CDS |
TGCCAGTTGCCAGTAAACCA+AGG | 0.669415 | 2.3:-32623088 | None:intergenic |
ACCAATTGAGGTTATCCCTG+CGG | 0.697474 | 2.3:-32622879 | None:intergenic |
AAATTATACCTCAATCTCAG+TGG | 0.698073 | 2.3:-32627699 | None:intergenic |
CTTGAAAGAGACGCCCCTCG+GGG | 0.710609 | 2.3:-32622267 | None:intergenic |
ATTTGGATATGAGATGCCTG+TGG | 0.719306 | 2.3:+32623746 | MS.gene043801:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 32622217 | 32629947 | 32622217 | ID=MS.gene043801 |
chr2.3 | mRNA | 32622217 | 32629947 | 32622217 | ID=MS.gene043801.t1;Parent=MS.gene043801 |
chr2.3 | exon | 32622217 | 32622292 | 32622217 | ID=MS.gene043801.t1.exon1;Parent=MS.gene043801.t1 |
chr2.3 | CDS | 32622217 | 32622292 | 32622217 | ID=cds.MS.gene043801.t1;Parent=MS.gene043801.t1 |
chr2.3 | exon | 32622855 | 32622949 | 32622855 | ID=MS.gene043801.t1.exon2;Parent=MS.gene043801.t1 |
chr2.3 | CDS | 32622855 | 32622949 | 32622855 | ID=cds.MS.gene043801.t1;Parent=MS.gene043801.t1 |
chr2.3 | exon | 32623035 | 32623116 | 32623035 | ID=MS.gene043801.t1.exon3;Parent=MS.gene043801.t1 |
chr2.3 | CDS | 32623035 | 32623116 | 32623035 | ID=cds.MS.gene043801.t1;Parent=MS.gene043801.t1 |
chr2.3 | exon | 32623688 | 32623784 | 32623688 | ID=MS.gene043801.t1.exon4;Parent=MS.gene043801.t1 |
chr2.3 | CDS | 32623688 | 32623784 | 32623688 | ID=cds.MS.gene043801.t1;Parent=MS.gene043801.t1 |
chr2.3 | exon | 32624381 | 32624439 | 32624381 | ID=MS.gene043801.t1.exon5;Parent=MS.gene043801.t1 |
chr2.3 | CDS | 32624381 | 32624439 | 32624381 | ID=cds.MS.gene043801.t1;Parent=MS.gene043801.t1 |
chr2.3 | exon | 32624583 | 32624665 | 32624583 | ID=MS.gene043801.t1.exon6;Parent=MS.gene043801.t1 |
chr2.3 | CDS | 32624583 | 32624665 | 32624583 | ID=cds.MS.gene043801.t1;Parent=MS.gene043801.t1 |
chr2.3 | exon | 32626703 | 32626780 | 32626703 | ID=MS.gene043801.t1.exon7;Parent=MS.gene043801.t1 |
chr2.3 | CDS | 32626703 | 32626780 | 32626703 | ID=cds.MS.gene043801.t1;Parent=MS.gene043801.t1 |
chr2.3 | exon | 32627653 | 32627712 | 32627653 | ID=MS.gene043801.t1.exon8;Parent=MS.gene043801.t1 |
chr2.3 | CDS | 32627653 | 32627712 | 32627653 | ID=cds.MS.gene043801.t1;Parent=MS.gene043801.t1 |
chr2.3 | exon | 32629855 | 32629947 | 32629855 | ID=MS.gene043801.t1.exon9;Parent=MS.gene043801.t1 |
chr2.3 | CDS | 32629855 | 32629947 | 32629855 | ID=cds.MS.gene043801.t1;Parent=MS.gene043801.t1 |
Gene Sequence |
Protein sequence |