Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070615.t1 | XP_013445564.1 | 100 | 246 | 0 | 0 | 1 | 246 | 1 | 246 | 1.00E-135 | 492.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070615.t1 | O48551 | 94.3 | 246 | 14 | 0 | 1 | 246 | 1 | 246 | 5.9e-132 | 471.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070615.t1 | B7FMD3 | 100.0 | 246 | 0 | 0 | 1 | 246 | 1 | 246 | 7.4e-136 | 492.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070615.t1 | MTR_8g464460 | 100.000 | 246 | 0 | 0 | 1 | 246 | 1 | 246 | 0.0 | 511 |
| MS.gene070615.t1 | MTR_2g060830 | 93.496 | 246 | 16 | 0 | 1 | 246 | 1 | 246 | 3.14e-175 | 482 |
| MS.gene070615.t1 | MTR_0167s0060 | 38.961 | 231 | 136 | 4 | 9 | 239 | 6 | 231 | 5.42e-48 | 159 |
| MS.gene070615.t1 | MTR_7g070070 | 42.211 | 199 | 111 | 3 | 9 | 206 | 5 | 200 | 1.95e-44 | 150 |
| MS.gene070615.t1 | MTR_5g016590 | 41.709 | 199 | 112 | 3 | 9 | 206 | 5 | 200 | 3.19e-43 | 147 |
| MS.gene070615.t1 | MTR_8g075320 | 38.428 | 229 | 133 | 5 | 9 | 236 | 4 | 225 | 2.48e-41 | 142 |
| MS.gene070615.t1 | MTR_1g112250 | 34.199 | 231 | 142 | 5 | 9 | 236 | 8 | 231 | 1.89e-40 | 139 |
| MS.gene070615.t1 | MTR_2g016050 | 37.946 | 224 | 127 | 5 | 1 | 223 | 1 | 213 | 2.36e-39 | 137 |
| MS.gene070615.t1 | MTR_1g022410 | 35.217 | 230 | 143 | 5 | 9 | 237 | 6 | 230 | 1.79e-38 | 135 |
| MS.gene070615.t1 | MTR_6g024135 | 36.932 | 176 | 109 | 2 | 6 | 181 | 5 | 178 | 2.53e-32 | 119 |
| MS.gene070615.t1 | MTR_4g012740 | 28.625 | 269 | 146 | 10 | 9 | 237 | 237 | 499 | 2.73e-21 | 92.8 |
| MS.gene070615.t1 | MTR_4g057090 | 26.484 | 219 | 139 | 7 | 12 | 220 | 91 | 297 | 1.31e-15 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene070615.t1 | AT5G35590 | 86.179 | 246 | 34 | 0 | 1 | 246 | 1 | 246 | 1.47e-166 | 460 |
| MS.gene070615.t1 | AT2G05840 | 86.179 | 246 | 34 | 0 | 1 | 246 | 1 | 246 | 4.27e-165 | 456 |
| MS.gene070615.t1 | AT2G05840 | 87.558 | 217 | 27 | 0 | 1 | 217 | 1 | 217 | 6.20e-148 | 412 |
| MS.gene070615.t1 | AT2G05840 | 84.925 | 199 | 30 | 0 | 1 | 199 | 1 | 199 | 2.12e-132 | 372 |
| MS.gene070615.t1 | AT1G16470 | 37.179 | 234 | 142 | 4 | 9 | 242 | 6 | 234 | 2.26e-45 | 152 |
| MS.gene070615.t1 | AT1G16470 | 37.179 | 234 | 142 | 4 | 9 | 242 | 6 | 234 | 2.26e-45 | 152 |
| MS.gene070615.t1 | AT1G79210 | 37.179 | 234 | 142 | 4 | 9 | 242 | 6 | 234 | 3.83e-45 | 151 |
| MS.gene070615.t1 | AT1G79210 | 37.179 | 234 | 142 | 4 | 9 | 242 | 6 | 234 | 3.83e-45 | 151 |
| MS.gene070615.t1 | AT1G79210 | 37.179 | 234 | 142 | 4 | 9 | 242 | 6 | 234 | 3.83e-45 | 151 |
| MS.gene070615.t1 | AT5G66140 | 36.681 | 229 | 138 | 4 | 9 | 236 | 4 | 226 | 2.33e-42 | 144 |
| MS.gene070615.t1 | AT3G51260 | 36.681 | 229 | 138 | 4 | 9 | 236 | 4 | 226 | 4.79e-42 | 144 |
| MS.gene070615.t1 | AT3G22110 | 40.704 | 199 | 114 | 3 | 9 | 206 | 5 | 200 | 8.56e-42 | 143 |
| MS.gene070615.t1 | AT1G53850 | 35.065 | 231 | 140 | 5 | 9 | 236 | 8 | 231 | 2.12e-41 | 142 |
| MS.gene070615.t1 | AT1G53850 | 35.065 | 231 | 140 | 5 | 9 | 236 | 8 | 231 | 2.12e-41 | 142 |
| MS.gene070615.t1 | AT3G14290 | 34.632 | 231 | 141 | 5 | 9 | 236 | 8 | 231 | 5.52e-41 | 140 |
| MS.gene070615.t1 | AT3G51260 | 37.143 | 210 | 127 | 3 | 9 | 217 | 4 | 209 | 5.14e-40 | 138 |
| MS.gene070615.t1 | AT1G47250 | 36.404 | 228 | 139 | 5 | 9 | 235 | 6 | 228 | 2.20e-38 | 135 |
| MS.gene070615.t1 | AT5G42790 | 35.526 | 228 | 141 | 5 | 9 | 235 | 6 | 228 | 2.18e-37 | 132 |
| MS.gene070615.t1 | AT2G27020 | 36.022 | 186 | 111 | 4 | 6 | 185 | 5 | 188 | 3.16e-31 | 115 |
| MS.gene070615.t1 | AT2G27020 | 36.216 | 185 | 110 | 4 | 6 | 184 | 107 | 289 | 2.72e-30 | 115 |
| MS.gene070615.t1 | AT4G15165 | 32.161 | 199 | 89 | 4 | 9 | 206 | 5 | 158 | 9.04e-25 | 97.8 |
Find 64 sgRNAs with CRISPR-Local
Find 356 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCAAGTACCTTGGTTTAC+TGG | 0.220686 | 8.1:+49744778 | MS.gene070615:CDS |
| TTGTGAAGTTGCTATGGTTT+TGG | 0.249914 | 8.1:+49746643 | MS.gene070615:intron |
| GGCCACAAGTGCTGGATTAA+AGG | 0.275884 | 8.1:+49747628 | MS.gene070615:intron |
| TTGTGTGGTTACTCAGAAAA+AGG | 0.276202 | 8.1:+49744617 | MS.gene070615:CDS |
| CCAAGAGGCAATCAATTTCT+TGG | 0.284591 | 8.1:+49747652 | MS.gene070615:CDS |
| AAACCAAGGTACTTGGTAAT+AGG | 0.326413 | 8.1:-49744773 | None:intergenic |
| CTGTGGATGTGCTGTCTAAA+TGG | 0.340867 | 8.1:+49745989 | MS.gene070615:CDS |
| GGATAACCTCGATTGGTGTT+AGG | 0.343827 | 8.1:+49744580 | MS.gene070615:CDS |
| AACTGATTGCAAGGCAGAAA+TGG | 0.358222 | 8.1:-49749254 | None:intergenic |
| GTGGACAAAACTCTAAATTC+TGG | 0.373989 | 8.1:-49749551 | None:intergenic |
| TTCAAGGCTGTTAAGTCTGC+AGG | 0.383896 | 8.1:+49744558 | MS.gene070615:CDS |
| CAGGGTCACATTTGTAAAGC+TGG | 0.386432 | 8.1:-49746688 | None:intergenic |
| TACCTATGCCGAGACGGTTC+AGG | 0.388567 | 8.1:+49747703 | MS.gene070615:CDS |
| TCAAACAGAGTATGCTTTCA+AGG | 0.394882 | 8.1:+49744542 | MS.gene070615:intron |
| GCTGAGTATCGCTTTAGATA+TGG | 0.406865 | 8.1:+49745955 | MS.gene070615:CDS |
| GATAACCTCGATTGGTGTTA+GGG | 0.418833 | 8.1:+49744581 | MS.gene070615:CDS |
| CCAAGAAATTGATTGCCTCT+TGG | 0.430454 | 8.1:-49747652 | None:intergenic |
| TGTACTCAGGCCACAAGTGC+TGG | 0.430811 | 8.1:+49747620 | MS.gene070615:intron |
| GTCCTTTAATCCAGCACTTG+TGG | 0.454543 | 8.1:-49747630 | None:intergenic |
| TGCTTGTTGAACTAGTGTCC+TGG | 0.461152 | 8.1:-49745920 | None:intergenic |
| TTGGGTATTGATGATGAACT+TGG | 0.463592 | 8.1:+49746662 | MS.gene070615:CDS |
| CTGTTGTTGTGAAGTTGCTA+TGG | 0.481487 | 8.1:+49746637 | MS.gene070615:intron |
| GGCCAGTAAACCAAGGTACT+TGG | 0.487125 | 8.1:-49744780 | None:intergenic |
| ATGAGTAGAGGAAGCGGAGG+TGG | 0.488527 | 8.1:+49743566 | MS.gene070615:CDS |
| GACCCTGCTGGTCATTACTT+TGG | 0.498366 | 8.1:+49746704 | MS.gene070615:CDS |
| TACCTTGGTTTACTGGCCAC+TGG | 0.499825 | 8.1:+49744785 | MS.gene070615:CDS |
| ACTTGAAAGAGGCGCCCCTC+CGG | 0.501215 | 8.1:-49743617 | None:intergenic |
| AGGGTCACATTTGTAAAGCT+GGG | 0.502939 | 8.1:-49746687 | None:intergenic |
| GTCTCGGCATAGGTAAATGA+AGG | 0.506661 | 8.1:-49747695 | None:intergenic |
| AGAGATGTGTAACACTTGTA+TGG | 0.512075 | 8.1:-49744748 | None:intergenic |
| TTACTGGCCACTGGCATCAC+AGG | 0.515432 | 8.1:+49744794 | MS.gene070615:CDS |
| TTTCCTATTACCAAGTACCT+TGG | 0.521924 | 8.1:+49744770 | MS.gene070615:CDS |
| TGACCAAAGTAATGACCAGC+AGG | 0.522657 | 8.1:-49746707 | None:intergenic |
| CTTGCAATCAGTTCTTCAAG+AGG | 0.529591 | 8.1:+49749264 | MS.gene070615:CDS |
| CGTACGTACCGACTTGAAAG+AGG | 0.540031 | 8.1:-49743628 | None:intergenic |
| CATGCTTATATGAGACCACT+TGG | 0.542442 | 8.1:+49746459 | MS.gene070615:CDS |
| GAAAACATGAGTAGAGGAAG+CGG | 0.549281 | 8.1:+49743560 | None:intergenic |
| CTAGGTTGGAGTTGTGCAGA+AGG | 0.553908 | 8.1:+49749523 | MS.gene070615:intron |
| TTCATTTACCTATGCCGAGA+CGG | 0.554212 | 8.1:+49747697 | MS.gene070615:CDS |
| CTTTACAAATGTGACCCTGC+TGG | 0.558651 | 8.1:+49746692 | MS.gene070615:CDS |
| CTCTTGAAGAACTGATTGCA+AGG | 0.559622 | 8.1:-49749263 | None:intergenic |
| GGGAAAAGATTCAGTTTGTG+TGG | 0.559768 | 8.1:+49744602 | MS.gene070615:CDS |
| TGGGTATTGATGATGAACTT+GGG | 0.560332 | 8.1:+49746663 | MS.gene070615:CDS |
| AAATATTACCTGAACCGTCT+CGG | 0.561908 | 8.1:-49747711 | None:intergenic |
| TACCTGAACCGTCTCGGCAT+AGG | 0.580613 | 8.1:-49747705 | None:intergenic |
| CATTTAGACAGCACATCCAC+AGG | 0.587968 | 8.1:-49745988 | None:intergenic |
| TCTGCAGGGATAACCTCGAT+TGG | 0.594530 | 8.1:+49744573 | MS.gene070615:CDS |
| TCAAGGCTGTTAAGTCTGCA+GGG | 0.604847 | 8.1:+49744559 | MS.gene070615:CDS |
| CAAGTGCTCGTCAATTTCGT+CGG | 0.604959 | 8.1:-49749573 | None:intergenic |
| TATATGAGACCACTTGGAGT+AGG | 0.609958 | 8.1:+49746465 | MS.gene070615:CDS |
| GTGCTCGTCAATTTCGTCGG+TGG | 0.614681 | 8.1:-49749570 | None:intergenic |
| TGGTCATTACTTTGGTCACA+AGG | 0.621200 | 8.1:+49746712 | MS.gene070615:CDS |
| TGCTGGATTAAAGGACCAAG+AGG | 0.623889 | 8.1:+49747637 | MS.gene070615:CDS |
| CCATAGGAAAACATGAGTAG+AGG | 0.629652 | 8.1:+49743554 | None:intergenic |
| GAGGGGCGCCTCTTTCAAGT+CGG | 0.649322 | 8.1:+49743620 | MS.gene070615:CDS |
| AAACACATACCTACTCCAAG+TGG | 0.652321 | 8.1:-49746474 | None:intergenic |
| GGGTCACATTTGTAAAGCTG+GGG | 0.657277 | 8.1:-49746686 | None:intergenic |
| AACATGAGTAGAGGAAGCGG+AGG | 0.676655 | 8.1:+49743563 | None:intergenic |
| TGCCAGTGGCCAGTAAACCA+AGG | 0.682988 | 8.1:-49744787 | None:intergenic |
| TCTCGGCATAGGTAAATGAA+GGG | 0.686969 | 8.1:-49747694 | None:intergenic |
| ATAACCTCGATTGGTGTTAG+GGG | 0.701420 | 8.1:+49744582 | MS.gene070615:CDS |
| ATATGGATATGAGATGCCTG+TGG | 0.717907 | 8.1:+49745972 | MS.gene070615:CDS |
| GACCAAAGTAATGACCAGCA+GGG | 0.719039 | 8.1:-49746706 | None:intergenic |
| GAACATACCTGTGATGCCAG+TGG | 0.749474 | 8.1:-49744801 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTTAAATATATATATT+TGG | - | chr8.1:49745686-49745705 | None:intergenic | 0.0% |
| !! | AAAATAAAATAAAAAAACAG+AGG | + | chr8.1:49747230-49747249 | MS.gene070615:intron | 10.0% |
| !! | GTAAAAATAAAGAATAAAAT+TGG | - | chr8.1:49747028-49747047 | None:intergenic | 10.0% |
| !! | GTAAAAATATAAGATAAATA+TGG | + | chr8.1:49746131-49746150 | MS.gene070615:intron | 10.0% |
| !! | TTAAGATTCTTTATTAAATT+TGG | + | chr8.1:49746835-49746854 | MS.gene070615:intron | 10.0% |
| !!! | TATTTATGTTCTAAATTTAT+TGG | + | chr8.1:49749410-49749429 | MS.gene070615:intron | 10.0% |
| !!! | TCAAAATATATTCATTTTTT+GGG | - | chr8.1:49745766-49745785 | None:intergenic | 10.0% |
| !!! | TTCAAAATATATTCATTTTT+TGG | - | chr8.1:49745767-49745786 | None:intergenic | 10.0% |
| !! | AAAACTAATTATAAATGAGA+AGG | - | chr8.1:49747392-49747411 | None:intergenic | 15.0% |
| !! | AAATAAATTTACTGTGTAAT+GGG | + | chr8.1:49743740-49743759 | MS.gene070615:intron | 15.0% |
| !! | AACAATATTATATTTACAGT+AGG | - | chr8.1:49749154-49749173 | None:intergenic | 15.0% |
| !! | AATAAAATTGGAAGAAAAAA+TGG | - | chr8.1:49747016-49747035 | None:intergenic | 15.0% |
| !! | AGTTTATAATCTATATGTTA+TGG | + | chr8.1:49747810-49747829 | MS.gene070615:intron | 15.0% |
| !! | ATACAGATTAATAATCATAA+TGG | - | chr8.1:49748867-49748886 | None:intergenic | 15.0% |
| !! | ATTATTATTAGGTTAAATTG+TGG | + | chr8.1:49743657-49743676 | MS.gene070615:intron | 15.0% |
| !! | GTTTATAATCTATATGTTAT+GGG | + | chr8.1:49747811-49747830 | MS.gene070615:intron | 15.0% |
| !! | GTTTGTATTATTATTGAAAA+TGG | - | chr8.1:49744995-49745014 | None:intergenic | 15.0% |
| !! | TAAAGAATCTTAAACATTTA+TGG | - | chr8.1:49746828-49746847 | None:intergenic | 15.0% |
| !! | TAAATAAATTTACTGTGTAA+TGG | + | chr8.1:49743739-49743758 | MS.gene070615:intron | 15.0% |
| !! | TAGAATTGTTTGATAAATAT+TGG | + | chr8.1:49748887-49748906 | MS.gene070615:intron | 15.0% |
| !! | TATAGAATTAGAATCTTAAA+AGG | - | chr8.1:49749208-49749227 | None:intergenic | 15.0% |
| !! | TTTATAATCTATATGTTATG+GGG | + | chr8.1:49747812-49747831 | MS.gene070615:intron | 15.0% |
| !!! | CAAAATATATTCATTTTTTG+GGG | - | chr8.1:49745765-49745784 | None:intergenic | 15.0% |
| !!! | CTCATTTATAATTAGTTTTT+TGG | + | chr8.1:49747393-49747412 | MS.gene070615:intron | 15.0% |
| !!! | TCTAAAATAATGAGTTTTAA+AGG | - | chr8.1:49746097-49746116 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTATTTGGAAACT+CGG | + | chr8.1:49743956-49743975 | MS.gene070615:intron | 15.0% |
| !! | AAATTTACACAACAATGTAA+TGG | + | chr8.1:49744439-49744458 | MS.gene070615:intron | 20.0% |
| !! | AAGAATATAGTTTCTTTAGT+GGG | + | chr8.1:49747253-49747272 | MS.gene070615:intron | 20.0% |
| !! | AATAAAGAACATACATAAAC+GGG | - | chr8.1:49744886-49744905 | None:intergenic | 20.0% |
| !! | AATAATACAAACATTTGAGA+AGG | + | chr8.1:49745003-49745022 | MS.gene070615:intron | 20.0% |
| !! | ATGATAATAACTAAGCAATA+TGG | + | chr8.1:49746236-49746255 | MS.gene070615:intron | 20.0% |
| !! | CAATAAAGAACATACATAAA+CGG | - | chr8.1:49744887-49744906 | None:intergenic | 20.0% |
| !! | CATTATGTAAAACTATTTGT+GGG | - | chr8.1:49749467-49749486 | None:intergenic | 20.0% |
| !! | GTACGTGTATTATTATTATT+AGG | + | chr8.1:49743646-49743665 | MS.gene070615:intron | 20.0% |
| !! | GTTTGTATAAATATGTCTAT+TGG | - | chr8.1:49745633-49745652 | None:intergenic | 20.0% |
| !! | TAAAAATCTATTATGTACTC+AGG | + | chr8.1:49747607-49747626 | MS.gene070615:intron | 20.0% |
| !! | TAATGATAATATGACTCAAA+TGG | + | chr8.1:49749482-49749501 | MS.gene070615:intron | 20.0% |
| !! | TACAATATGTTGTTAAATAG+TGG | + | chr8.1:49744280-49744299 | MS.gene070615:intron | 20.0% |
| !! | TCATTATGTAAAACTATTTG+TGG | - | chr8.1:49749468-49749487 | None:intergenic | 20.0% |
| !! | TCTTTACCATAATCAAAATA+CGG | + | chr8.1:49748501-49748520 | MS.gene070615:intron | 20.0% |
| !! | TGATAAATATTGGATATATG+TGG | + | chr8.1:49748897-49748916 | MS.gene070615:intron | 20.0% |
| !! | TTATTATTGAAAATGGAAAC+AGG | - | chr8.1:49744988-49745007 | None:intergenic | 20.0% |
| !!! | AAAACAACATCTCTTTTTAA+TGG | - | chr8.1:49747501-49747520 | None:intergenic | 20.0% |
| !!! | AACTTTTTTTGGTATAAAAG+GGG | + | chr8.1:49747875-49747894 | MS.gene070615:intron | 20.0% |
| !!! | AGTATACAATTTTAGTATAG+TGG | + | chr8.1:49743911-49743930 | MS.gene070615:intron | 20.0% |
| !!! | ATCTCTTTTTAATGGAAAAT+TGG | - | chr8.1:49747493-49747512 | None:intergenic | 20.0% |
| !!! | CAACTTTTTTTGGTATAAAA+GGG | + | chr8.1:49747874-49747893 | MS.gene070615:intron | 20.0% |
| !!! | CATTTATGTGTCATTTTTAT+CGG | + | chr8.1:49745414-49745433 | MS.gene070615:intron | 20.0% |
| !!! | GATTATTTGAGTTGTTTAAT+AGG | + | chr8.1:49746767-49746786 | MS.gene070615:intron | 20.0% |
| !!! | TCAACTTTTTTTGGTATAAA+AGG | + | chr8.1:49747873-49747892 | MS.gene070615:intron | 20.0% |
| !!! | TCAATTTTTACTTTGTATGT+GGG | - | chr8.1:49745127-49745146 | None:intergenic | 20.0% |
| !!! | TCTAATAAATATCTGAAGTT+CGG | - | chr8.1:49749084-49749103 | None:intergenic | 20.0% |
| !!! | TGATTGATTCTTTGTTAATT+GGG | + | chr8.1:49747338-49747357 | MS.gene070615:intron | 20.0% |
| !!! | TGTTCTAAATTTATTGGTTA+AGG | + | chr8.1:49749416-49749435 | MS.gene070615:intron | 20.0% |
| !!! | TTCAATTTTTACTTTGTATG+TGG | - | chr8.1:49745128-49745147 | None:intergenic | 20.0% |
| !!! | TTGATTGATTCTTTGTTAAT+TGG | + | chr8.1:49747337-49747356 | MS.gene070615:intron | 20.0% |
| !!! | TTTTTTCACTTGTATTTATC+TGG | + | chr8.1:49744216-49744235 | MS.gene070615:intron | 20.0% |
| ! | AAAATCACGAAACAATATCA+TGG | - | chr8.1:49749351-49749370 | None:intergenic | 25.0% |
| ! | AAATGAATTGGGTAAATGAT+GGG | + | chr8.1:49747947-49747966 | MS.gene070615:intron | 25.0% |
| ! | AACACACTAACAAATACATA+TGG | + | chr8.1:49748228-49748247 | MS.gene070615:intron | 25.0% |
| ! | AACACTAATCCTAAATAAGT+AGG | + | chr8.1:49746195-49746214 | MS.gene070615:intron | 25.0% |
| ! | AAGTGGAAAGAAAAAATATG+AGG | - | chr8.1:49748555-49748574 | None:intergenic | 25.0% |
| ! | AATTGATTGTTTATCCACAT+TGG | - | chr8.1:49748765-49748784 | None:intergenic | 25.0% |
| ! | ACAATATCATGGAGATATAA+AGG | - | chr8.1:49749340-49749359 | None:intergenic | 25.0% |
| ! | ACACACTAACAAATACATAT+GGG | + | chr8.1:49748229-49748248 | MS.gene070615:intron | 25.0% |
| ! | AGATGTAGTATGAAATGAAT+TGG | + | chr8.1:49747935-49747954 | MS.gene070615:intron | 25.0% |
| ! | AGGATCAATTTCTAATCTTA+AGG | - | chr8.1:49746290-49746309 | None:intergenic | 25.0% |
| ! | AGTCATAATCATAGTTTCTT+GGG | + | chr8.1:49747176-49747195 | MS.gene070615:intron | 25.0% |
| ! | AGTGGAAAGAAAAAATATGA+GGG | - | chr8.1:49748554-49748573 | None:intergenic | 25.0% |
| ! | ATCAGATAATATGACACAAT+TGG | + | chr8.1:49745514-49745533 | MS.gene070615:intron | 25.0% |
| ! | ATGCAAGAGACTAAAAATAA+TGG | + | chr8.1:49745583-49745602 | MS.gene070615:intron | 25.0% |
| ! | ATTTCATACTACATCTATCA+GGG | - | chr8.1:49747931-49747950 | None:intergenic | 25.0% |
| ! | ATTTGCATTTCATAAAGCAT+AGG | + | chr8.1:49743808-49743827 | MS.gene070615:intron | 25.0% |
| ! | CAGATTAATAATCATAATGG+TGG | - | chr8.1:49748864-49748883 | None:intergenic | 25.0% |
| ! | GAAGAATATAGTTTCTTTAG+TGG | + | chr8.1:49747252-49747271 | MS.gene070615:intron | 25.0% |
| ! | GATGTAGTATGAAATGAATT+GGG | + | chr8.1:49747936-49747955 | MS.gene070615:intron | 25.0% |
| ! | TAAGATTAGAAATTGATCCT+AGG | + | chr8.1:49746290-49746309 | MS.gene070615:intron | 25.0% |
| ! | TAAGTTACAGTTATTCAATG+CGG | + | chr8.1:49748380-49748399 | MS.gene070615:intron | 25.0% |
| ! | TAATGGAATCTGACTTTATA+GGG | + | chr8.1:49745600-49745619 | MS.gene070615:intron | 25.0% |
| ! | TACTTAGACTTATCATAAGT+TGG | + | chr8.1:49746919-49746938 | MS.gene070615:intron | 25.0% |
| ! | TAGTCATAATCATAGTTTCT+TGG | + | chr8.1:49747175-49747194 | MS.gene070615:intron | 25.0% |
| ! | TATGGAATTGAAATCACTAT+GGG | - | chr8.1:49746810-49746829 | None:intergenic | 25.0% |
| ! | TCAACTCACAGAAAAATTAT+AGG | - | chr8.1:49745711-49745730 | None:intergenic | 25.0% |
| ! | TGTTAAATAACTGTATGTAC+TGG | + | chr8.1:49745249-49745268 | MS.gene070615:intron | 25.0% |
| ! | TTATGGAATTGAAATCACTA+TGG | - | chr8.1:49746811-49746830 | None:intergenic | 25.0% |
| ! | TTCTAATTCTATAATCTCCA+TGG | + | chr8.1:49749215-49749234 | MS.gene070615:intron | 25.0% |
| !! | ATAATGGAATCTGACTTTAT+AGG | + | chr8.1:49745599-49745618 | MS.gene070615:intron | 25.0% |
| !! | CTGATTCGAATGATAAATAT+AGG | - | chr8.1:49744418-49744437 | None:intergenic | 25.0% |
| !! | CTTGATTTTCCTACTTATTT+AGG | - | chr8.1:49746207-49746226 | None:intergenic | 25.0% |
| !! | TTCTCACCTTTTACTAAATA+CGG | - | chr8.1:49748937-49748956 | None:intergenic | 25.0% |
| !! | TTGTATTTTTCTCCTTTTCT+AGG | + | chr8.1:49749505-49749524 | MS.gene070615:intron | 25.0% |
| !!! | AAAAATTTACCCTCTAAAGT+TGG | - | chr8.1:49746878-49746897 | None:intergenic | 25.0% |
| !!! | AAGTTCTAAATGGTAAATAC+TGG | - | chr8.1:49747125-49747144 | None:intergenic | 25.0% |
| !!! | ATATATTCATTTTTTGGGGT+CGG | - | chr8.1:49745761-49745780 | None:intergenic | 25.0% |
| !!! | TTCTTCTTTCAAGTTCTAAA+TGG | - | chr8.1:49747135-49747154 | None:intergenic | 25.0% |
| AAAAACGATGATATGGCAAA+CGG | - | chr8.1:49745544-49745563 | None:intergenic | 30.0% | |
| AAATGACACATAAATGCAAG+TGG | - | chr8.1:49745410-49745429 | None:intergenic | 30.0% | |
| AACAATGTGTTGTCAAATTG+TGG | + | chr8.1:49743878-49743897 | MS.gene070615:intron | 30.0% | |
| AAGAAGAACATCAACAATGT+TGG | + | chr8.1:49747147-49747166 | MS.gene070615:intron | 30.0% | |
| AATAACTGCCTAATACAAAC+AGG | + | chr8.1:49748088-49748107 | MS.gene070615:intron | 30.0% | |
| ACAAAGAATCAATCAATCTG+TGG | - | chr8.1:49747333-49747352 | None:intergenic | 30.0% | |
| ATTAGACAAAGTTGAATGCA+CGG | - | chr8.1:49748655-49748674 | None:intergenic | 30.0% | |
| CAATTCCGTATTCATGTTAA+CGG | - | chr8.1:49744195-49744214 | None:intergenic | 30.0% | |
| CATTTCATACTACATCTATC+AGG | - | chr8.1:49747932-49747951 | None:intergenic | 30.0% | |
| CGTTATAATCAGTCAATTGA+TGG | - | chr8.1:49745454-49745473 | None:intergenic | 30.0% | |
| GAAAATTTACAAGATTTGCC+AGG | - | chr8.1:49748812-49748831 | None:intergenic | 30.0% | |
| GAAATGAATTGGGTAAATGA+TGG | + | chr8.1:49747946-49747965 | MS.gene070615:intron | 30.0% | |
| GCATTACAAAAACGATGATA+TGG | - | chr8.1:49745551-49745570 | None:intergenic | 30.0% | |
| GTCTATGAATAGAATAAGGA+TGG | - | chr8.1:49748204-49748223 | None:intergenic | 30.0% | |
| GTGTGTCTATGAATAGAATA+AGG | - | chr8.1:49748208-49748227 | None:intergenic | 30.0% | |
| GTTGTTGCTATATTTGGTAA+AGG | - | chr8.1:49748164-49748183 | None:intergenic | 30.0% | |
| TAATCAGTCAATTGATGGAA+TGG | - | chr8.1:49745449-49745468 | None:intergenic | 30.0% | |
| TACAACTATTTCCTTTGTTC+TGG | + | chr8.1:49744829-49744848 | MS.gene070615:intron | 30.0% | |
| TATGAATAACTTCCATAGTG+AGG | + | chr8.1:49748042-49748061 | MS.gene070615:intron | 30.0% | |
| TATTCAAGTGATCTTAGTGT+TGG | + | chr8.1:49748980-49748999 | MS.gene070615:intron | 30.0% | |
| TGATTAGCAGCAATAAGAAT+GGG | - | chr8.1:49748281-49748300 | None:intergenic | 30.0% | |
| TGGAAATCGAAACTGTTAAT+CGG | + | chr8.1:49743835-49743854 | MS.gene070615:intron | 30.0% | |
| TTCATCAGTGAAAACTTCAA+AGG | - | chr8.1:49746505-49746524 | None:intergenic | 30.0% | |
| TTGTGTCATATTATCTGATG+TGG | - | chr8.1:49745513-49745532 | None:intergenic | 30.0% | |
| TTTAATGGAAAATTGGCATG+AGG | - | chr8.1:49747486-49747505 | None:intergenic | 30.0% | |
| TTTAGTAAAAGGTGAGAAGT+TGG | + | chr8.1:49748939-49748958 | MS.gene070615:intron | 30.0% | |
| TTTATTTGGAAACTCGGTTT+CGG | + | chr8.1:49743962-49743981 | MS.gene070615:intron | 30.0% | |
| TTTCAGTTCCTGTTTGTATT+AGG | - | chr8.1:49748099-49748118 | None:intergenic | 30.0% | |
| TTTCATAAAGCATAGGAAAG+TGG | + | chr8.1:49743815-49743834 | MS.gene070615:intron | 30.0% | |
| ! | ACAAAATCTGACTTGCAAAA+TGG | - | chr8.1:49747764-49747783 | None:intergenic | 30.0% |
| ! | AGTTCTTCAAGAGGATTTTA+AGG | + | chr8.1:49749273-49749292 | MS.gene070615:CDS | 30.0% |
| ! | ATTACGTTAGTTTATCTCCT+AGG | - | chr8.1:49746310-49746329 | None:intergenic | 30.0% |
| ! | ATTTTTACTTTGTATGTGGG+TGG | - | chr8.1:49745124-49745143 | None:intergenic | 30.0% |
| ! | ATTTTTCTCCTTTTCTAGGT+TGG | + | chr8.1:49749509-49749528 | MS.gene070615:intron | 30.0% |
| ! | CAAAATCTGACTTGCAAAAT+GGG | - | chr8.1:49747763-49747782 | None:intergenic | 30.0% |
| ! | CTTGTTATGAGTATTTGTGT+TGG | + | chr8.1:49744684-49744703 | MS.gene070615:intron | 30.0% |
| ! | TCATATCACTATTTTCTCAC+CGG | + | chr8.1:49743598-49743617 | MS.gene070615:CDS | 30.0% |
| ! | TGTATTCTTTTATGCTGACA+GGG | + | chr8.1:49746407-49746426 | MS.gene070615:intron | 30.0% |
| ! | TTGTATTCTTTTATGCTGAC+AGG | + | chr8.1:49746406-49746425 | MS.gene070615:intron | 30.0% |
| !! | AATGAGTTGTGTAGTTTGTT+AGG | + | chr8.1:49744491-49744510 | MS.gene070615:intron | 30.0% |
| !! | ATCTACAAGTTTTATCAAGG+AGG | + | chr8.1:49747276-49747295 | MS.gene070615:intron | 30.0% |
| !! | GAGAATTAGAAGTTCTGAAA+AGG | - | chr8.1:49748720-49748739 | None:intergenic | 30.0% |
| !! | GTAAATGATGGGCTATATAA+TGG | + | chr8.1:49747958-49747977 | MS.gene070615:intron | 30.0% |
| !! | TGTAATGGGTTTATTCAACT+AGG | + | chr8.1:49743754-49743773 | MS.gene070615:intron | 30.0% |
| !!! | TCACATTTTTTTTCCTTTCC+TGG | + | chr8.1:49748791-49748810 | MS.gene070615:intron | 30.0% |
| !!! | TTGGTACCGTATTTTGATTA+TGG | - | chr8.1:49748510-49748529 | None:intergenic | 30.0% |
| AAAATGAGCTCCAACTTTAG+AGG | + | chr8.1:49746865-49746884 | MS.gene070615:intron | 35.0% | |
| AAAATGGCTACACCAAAACT+CGG | - | chr8.1:49747000-49747019 | None:intergenic | 35.0% | |
| AAATATTACCTGAACCGTCT+CGG | - | chr8.1:49747714-49747733 | None:intergenic | 35.0% | |
| AAATGAGAAGGATGCGAAAT+TGG | - | chr8.1:49747380-49747399 | None:intergenic | 35.0% | |
| AAATGAGCTCCAACTTTAGA+GGG | + | chr8.1:49746866-49746885 | MS.gene070615:intron | 35.0% | |
| AACAAAGTAACTGCAGTAAC+AGG | - | chr8.1:49745313-49745332 | None:intergenic | 35.0% | |
| AATAACTTCCATAGTGAGGT+GGG | + | chr8.1:49748046-49748065 | MS.gene070615:intron | 35.0% | |
| AATTCTACTGAGACCAAATG+AGG | + | chr8.1:49748672-49748691 | MS.gene070615:intron | 35.0% | |
| ACAATATACTGAGCCTCATT+TGG | - | chr8.1:49748688-49748707 | None:intergenic | 35.0% | |
| ACCAAACAAGGAAAGTCTAT+AGG | - | chr8.1:49748309-49748328 | None:intergenic | 35.0% | |
| ACTTTCACTTTCTCAAACAG+AGG | + | chr8.1:49745383-49745402 | MS.gene070615:intron | 35.0% | |
| AGAACATCAACAATGTTGGA+CGG | + | chr8.1:49747151-49747170 | MS.gene070615:intron | 35.0% | |
| AGAGATGTGTAACACTTGTA+TGG | - | chr8.1:49744751-49744770 | None:intergenic | 35.0% | |
| AGATAAGTCTAGACCAAACA+AGG | - | chr8.1:49748321-49748340 | None:intergenic | 35.0% | |
| ATAGTTATGGTAACCGATCA+AGG | - | chr8.1:49747550-49747569 | None:intergenic | 35.0% | |
| CAAATATAGCAACAACCTGA+TGG | + | chr8.1:49748168-49748187 | MS.gene070615:intron | 35.0% | |
| CAACAATGTAATGGCTAATG+AGG | + | chr8.1:49744448-49744467 | MS.gene070615:intron | 35.0% | |
| CAAGAAGCAGAACATGAATT+GGG | - | chr8.1:49748608-49748627 | None:intergenic | 35.0% | |
| CACTGTTGTTAACATGAATC+TGG | + | chr8.1:49744378-49744397 | MS.gene070615:intron | 35.0% | |
| CAGATGATAGGTAATGTTTG+AGG | + | chr8.1:49747423-49747442 | MS.gene070615:intron | 35.0% | |
| CATTCTTATTGCTGCTAATC+AGG | + | chr8.1:49748280-49748299 | MS.gene070615:intron | 35.0% | |
| CATTGCCGTTAACATGAATA+CGG | + | chr8.1:49744187-49744206 | MS.gene070615:intron | 35.0% | |
| CTGATTAGCAGCAATAAGAA+TGG | - | chr8.1:49748282-49748301 | None:intergenic | 35.0% | |
| GAATCTCAGATGCTAAGTTA+TGG | + | chr8.1:49745225-49745244 | MS.gene070615:intron | 35.0% | |
| GACTAGGCTCTCAAATAATT+AGG | - | chr8.1:49748255-49748274 | None:intergenic | 35.0% | |
| GCAGTCTGAATAAAAAACCA+TGG | - | chr8.1:49749235-49749254 | None:intergenic | 35.0% | |
| GGCATTAGTGTTTCTTGAAA+TGG | + | chr8.1:49745024-49745043 | MS.gene070615:intron | 35.0% | |
| GTGGACAAAACTCTAAATTC+TGG | - | chr8.1:49749554-49749573 | None:intergenic | 35.0% | |
| TATATGTGGATGCTGAAGAT+TGG | + | chr8.1:49748911-49748930 | MS.gene070615:intron | 35.0% | |
| TCAAACAGAGTATGCTTTCA+AGG | + | chr8.1:49744542-49744561 | MS.gene070615:intron | 35.0% | |
| TCTCTCTATCTCAGTTGAAA+AGG | + | chr8.1:49745071-49745090 | MS.gene070615:intron | 35.0% | |
| TGTTGTCAAATTGTGGCTAT+AGG | + | chr8.1:49743885-49743904 | MS.gene070615:intron | 35.0% | |
| TTATTTGGAAACTCGGTTTC+GGG | + | chr8.1:49743963-49743982 | MS.gene070615:intron | 35.0% | |
| TTGAAACCAAATCAGACTCT+TGG | - | chr8.1:49748529-49748548 | None:intergenic | 35.0% | |
| TTGTGTGGTTACTCAGAAAA+AGG | + | chr8.1:49744617-49744636 | MS.gene070615:CDS | 35.0% | |
| TTGTTTGGTCTAGACTTATC+TGG | + | chr8.1:49748320-49748339 | MS.gene070615:intron | 35.0% | |
| TTTACAAGATTTGCCAGGAA+AGG | - | chr8.1:49748807-49748826 | None:intergenic | 35.0% | |
| TTTCCTATTACCAAGTACCT+TGG | + | chr8.1:49744770-49744789 | MS.gene070615:CDS | 35.0% | |
| ! | AAACCAAGGTACTTGGTAAT+AGG | - | chr8.1:49744776-49744795 | None:intergenic | 35.0% |
| ! | ACTGCAAAGGCATATAGTTA+TGG | - | chr8.1:49747563-49747582 | None:intergenic | 35.0% |
| ! | ACTTTAGTTTCTGACTGCAA+AGG | - | chr8.1:49747576-49747595 | None:intergenic | 35.0% |
| ! | AGACGGTTCAGGTAATATTT+TGG | + | chr8.1:49747714-49747733 | MS.gene070615:intron | 35.0% |
| ! | CAAGTCAGATTTTGTGTGAA+AGG | + | chr8.1:49747769-49747788 | MS.gene070615:intron | 35.0% |
| ! | CATCAGGTTGTTGCTATATT+TGG | - | chr8.1:49748170-49748189 | None:intergenic | 35.0% |
| ! | GACTTTTACCAAAACAGAGT+AGG | + | chr8.1:49747298-49747317 | MS.gene070615:intron | 35.0% |
| ! | GATTGGCCGTATTTAGTAAA+AGG | + | chr8.1:49748928-49748947 | MS.gene070615:intron | 35.0% |
| ! | TACCAATAGATACCGAGTTT+TGG | + | chr8.1:49746985-49747004 | MS.gene070615:intron | 35.0% |
| ! | TGTGAAGTTGCTATGGTTTT+GGG | + | chr8.1:49746644-49746663 | MS.gene070615:intron | 35.0% |
| ! | TGTTGGATCTTTTGCTAACT+GGG | + | chr8.1:49748997-49749016 | MS.gene070615:intron | 35.0% |
| ! | TTGTGAAGTTGCTATGGTTT+TGG | + | chr8.1:49746643-49746662 | MS.gene070615:intron | 35.0% |
| !! | AGTATTTGTGTTGGCTGATT+AGG | + | chr8.1:49744693-49744712 | MS.gene070615:intron | 35.0% |
| !! | GGGATCTACAAGTTTTATCA+AGG | + | chr8.1:49747273-49747292 | MS.gene070615:intron | 35.0% |
| !! | TGGGTATTGATGATGAACTT+GGG | + | chr8.1:49746663-49746682 | MS.gene070615:CDS | 35.0% |
| !! | TTGGGTATTGATGATGAACT+TGG | + | chr8.1:49746662-49746681 | MS.gene070615:CDS | 35.0% |
| !!! | TGTGTCATTTTTATCGGATG+TGG | + | chr8.1:49745420-49745439 | MS.gene070615:intron | 35.0% |
| !!! | TTTTAAGGCAACTGAGATTG+AGG | + | chr8.1:49749288-49749307 | MS.gene070615:CDS | 35.0% |
| AAACACATACCTACTCCAAG+TGG | - | chr8.1:49746477-49746496 | None:intergenic | 40.0% | |
| AACTGAATTGTTTGCACCAG+AGG | + | chr8.1:49744084-49744103 | MS.gene070615:intron | 40.0% | |
| AACTGATTGCAAGGCAGAAA+TGG | - | chr8.1:49749257-49749276 | None:intergenic | 40.0% | |
| AAGTATGCAACTTTCGCACA+AGG | - | chr8.1:49746537-49746556 | None:intergenic | 40.0% | |
| ACTTCACAGATCCAGAACAA+AGG | - | chr8.1:49744843-49744862 | None:intergenic | 40.0% | |
| AGGGTCACATTTGTAAAGCT+GGG | - | chr8.1:49746690-49746709 | None:intergenic | 40.0% | |
| AGTACAGGAAGTTGACTGTT+AGG | + | chr8.1:49744648-49744667 | MS.gene070615:intron | 40.0% | |
| ATATGGATATGAGATGCCTG+TGG | + | chr8.1:49745972-49745991 | MS.gene070615:CDS | 40.0% | |
| ATGCGGTAGTTACTGATAGT+TGG | + | chr8.1:49748397-49748416 | MS.gene070615:intron | 40.0% | |
| CAATAAGAATGGGAGAGACT+AGG | - | chr8.1:49748271-49748290 | None:intergenic | 40.0% | |
| CACCAAAACTCGGTATCTAT+TGG | - | chr8.1:49746990-49747009 | None:intergenic | 40.0% | |
| CATGCTTATATGAGACCACT+TGG | + | chr8.1:49746459-49746478 | MS.gene070615:CDS | 40.0% | |
| CCAAGAAATTGATTGCCTCT+TGG | - | chr8.1:49747655-49747674 | None:intergenic | 40.0% | |
| CCAAGAAGCAGAACATGAAT+TGG | - | chr8.1:49748609-49748628 | None:intergenic | 40.0% | |
| CCAAGAGGCAATCAATTTCT+TGG | + | chr8.1:49747652-49747671 | MS.gene070615:CDS | 40.0% | |
| CCAATTCATGTTCTGCTTCT+TGG | + | chr8.1:49748606-49748625 | MS.gene070615:intron | 40.0% | |
| CTCTTGAAGAACTGATTGCA+AGG | - | chr8.1:49749266-49749285 | None:intergenic | 40.0% | |
| CTGGTGCAAACAATTCAGTT+GGG | - | chr8.1:49744084-49744103 | None:intergenic | 40.0% | |
| CTGTTGTTGTGAAGTTGCTA+TGG | + | chr8.1:49746637-49746656 | MS.gene070615:intron | 40.0% | |
| CTTGCAATCAGTTCTTCAAG+AGG | + | chr8.1:49749264-49749283 | MS.gene070615:CDS | 40.0% | |
| GAATAACTTCCATAGTGAGG+TGG | + | chr8.1:49748045-49748064 | MS.gene070615:intron | 40.0% | |
| GAATCAATCAATCTGTGGCA+AGG | - | chr8.1:49747328-49747347 | None:intergenic | 40.0% | |
| GAATGTGGTGAAAGAGAAAG+TGG | - | chr8.1:49748572-49748591 | None:intergenic | 40.0% | |
| GAATTGGTCCCCAAATTAGT+CGG | - | chr8.1:49743997-49744016 | None:intergenic | 40.0% | |
| GCCTATAGACTTTCCTTGTT+TGG | + | chr8.1:49748305-49748324 | MS.gene070615:intron | 40.0% | |
| GGGAAAAGATTCAGTTTGTG+TGG | + | chr8.1:49744602-49744621 | MS.gene070615:CDS | 40.0% | |
| GGTTACTCAGAAAAAGGTTC+CGG | + | chr8.1:49744623-49744642 | MS.gene070615:CDS | 40.0% | |
| GTAAAGGAAAGTGAGAGACT+AGG | - | chr8.1:49748148-49748167 | None:intergenic | 40.0% | |
| GTTCATGTAGCCCAATAACA+TGG | - | chr8.1:49747907-49747926 | None:intergenic | 40.0% | |
| TACCAAGTACCTTGGTTTAC+TGG | + | chr8.1:49744778-49744797 | MS.gene070615:CDS | 40.0% | |
| TAGGCTCTCAAATATCGTAG+AGG | - | chr8.1:49748129-49748148 | None:intergenic | 40.0% | |
| TAGGTGGGATTGTTTAATGC+AGG | + | chr8.1:49744712-49744731 | MS.gene070615:intron | 40.0% | |
| TATATGAGACCACTTGGAGT+AGG | + | chr8.1:49746465-49746484 | MS.gene070615:CDS | 40.0% | |
| TCTCGGCATAGGTAAATGAA+GGG | - | chr8.1:49747697-49747716 | None:intergenic | 40.0% | |
| TCTGGTGCAAACAATTCAGT+TGG | - | chr8.1:49744085-49744104 | None:intergenic | 40.0% | |
| TGGAATCTGACTTTATAGGG+AGG | + | chr8.1:49745603-49745622 | MS.gene070615:intron | 40.0% | |
| TGGTCATTACTTTGGTCACA+AGG | + | chr8.1:49746712-49746731 | MS.gene070615:CDS | 40.0% | |
| TGTACTGGAATATGCTGAGT+CGG | + | chr8.1:49745264-49745283 | MS.gene070615:intron | 40.0% | |
| TGTGGTATAGATCAGATTGC+TGG | + | chr8.1:49749387-49749406 | MS.gene070615:intron | 40.0% | |
| TTACTTTGTATGTGGGTGGT+TGG | - | chr8.1:49745120-49745139 | None:intergenic | 40.0% | |
| TTCATTTACCTATGCCGAGA+CGG | + | chr8.1:49747697-49747716 | MS.gene070615:CDS | 40.0% | |
| ! | AAGGAAGACCTACTCTGTTT+TGG | - | chr8.1:49747309-49747328 | None:intergenic | 40.0% |
| ! | ATCACTATTTTCTCACCGGA+GGG | + | chr8.1:49743602-49743621 | MS.gene070615:CDS | 40.0% |
| ! | GCTGAGTATCGCTTTAGATA+TGG | + | chr8.1:49745955-49745974 | MS.gene070615:CDS | 40.0% |
| ! | GGTTATGCTTTGGGTTCAAT+TGG | - | chr8.1:49744040-49744059 | None:intergenic | 40.0% |
| ! | GTGTTGGATCTTTTGCTAAC+TGG | + | chr8.1:49748996-49749015 | MS.gene070615:intron | 40.0% |
| ! | GTTGGATCTTTTGCTAACTG+GGG | + | chr8.1:49748998-49749017 | MS.gene070615:intron | 40.0% |
| ! | TAATGTTTGAGGTGCCAACA+TGG | + | chr8.1:49747434-49747453 | MS.gene070615:intron | 40.0% |
| ! | TATCACTATTTTCTCACCGG+AGG | + | chr8.1:49743601-49743620 | MS.gene070615:CDS | 40.0% |
| ! | TGAGGCATCATTGTAATGCA+AGG | - | chr8.1:49747468-49747487 | None:intergenic | 40.0% |
| ! | TTGAAACTACGTGTTTGCTG+TGG | + | chr8.1:49749369-49749388 | MS.gene070615:intron | 40.0% |
| !! | ATAACCTCGATTGGTGTTAG+GGG | + | chr8.1:49744582-49744601 | MS.gene070615:CDS | 40.0% |
| !! | ATTTGTGTTGGCTGATTAGG+TGG | + | chr8.1:49744696-49744715 | MS.gene070615:intron | 40.0% |
| !! | GATAACCTCGATTGGTGTTA+GGG | + | chr8.1:49744581-49744600 | MS.gene070615:CDS | 40.0% |
| !! | TTTGTGTTGGCTGATTAGGT+GGG | + | chr8.1:49744697-49744716 | MS.gene070615:intron | 40.0% |
| AAAAAGGTTCCGGTGAGTAC+AGG | + | chr8.1:49744633-49744652 | MS.gene070615:intron | 45.0% | |
| AACGATGATATGGCAAACGG+AGG | - | chr8.1:49745541-49745560 | None:intergenic | 45.0% | |
| AAGGCAACTGAGATTGAGGT+AGG | + | chr8.1:49749292-49749311 | MS.gene070615:intron | 45.0% | |
| AATTCCACCGTCCACTAGTA+GGG | + | chr8.1:49744012-49744031 | MS.gene070615:intron | 45.0% | |
| ACGGTACCAAGAGTCTGATT+TGG | + | chr8.1:49748520-49748539 | MS.gene070615:intron | 45.0% | |
| AGGGGAGACTACCATGTTAT+TGG | + | chr8.1:49747893-49747912 | MS.gene070615:intron | 45.0% | |
| AGTCAACTTCCTGTACTCAC+CGG | - | chr8.1:49744645-49744664 | None:intergenic | 45.0% | |
| AGTTGGCGTCTCTATCTGTA+GGG | + | chr8.1:49748414-49748433 | MS.gene070615:intron | 45.0% | |
| AGTTTCTCAAGCTAGACGCA+TGG | - | chr8.1:49747840-49747859 | None:intergenic | 45.0% | |
| ATTGTGTACCCACCTCACTA+TGG | - | chr8.1:49748057-49748076 | None:intergenic | 45.0% | |
| CAAGTGCTCGTCAATTTCGT+CGG | - | chr8.1:49749576-49749595 | None:intergenic | 45.0% | |
| CAGGGTCACATTTGTAAAGC+TGG | - | chr8.1:49746691-49746710 | None:intergenic | 45.0% | |
| CATTTAGACAGCACATCCAC+AGG | - | chr8.1:49745991-49746010 | None:intergenic | 45.0% | |
| CCCAATGACCGACTAATTTG+GGG | + | chr8.1:49743986-49744005 | MS.gene070615:intron | 45.0% | |
| CCCCAAATTAGTCGGTCATT+GGG | - | chr8.1:49743989-49744008 | None:intergenic | 45.0% | |
| CTGTGGATGTGCTGTCTAAA+TGG | + | chr8.1:49745989-49746008 | MS.gene070615:CDS | 45.0% | |
| CTTTACAAATGTGACCCTGC+TGG | + | chr8.1:49746692-49746711 | MS.gene070615:CDS | 45.0% | |
| GACCAAAGTAATGACCAGCA+GGG | - | chr8.1:49746709-49746728 | None:intergenic | 45.0% | |
| GAGAAGGATGCGAAATTGGA+AGG | - | chr8.1:49747376-49747395 | None:intergenic | 45.0% | |
| GAGGCTTCATTTCGCTTGTT+TGG | + | chr8.1:49744467-49744486 | MS.gene070615:intron | 45.0% | |
| GATGGCACATGTAAACCATC+AGG | - | chr8.1:49748186-49748205 | None:intergenic | 45.0% | |
| GCACAACTCCAACCTAGAAA+AGG | - | chr8.1:49749520-49749539 | None:intergenic | 45.0% | |
| GCCCAATGACCGACTAATTT+GGG | + | chr8.1:49743985-49744004 | MS.gene070615:intron | 45.0% | |
| GGATGTGCTGTCTAAATGGT+AGG | + | chr8.1:49745993-49746012 | MS.gene070615:intron | 45.0% | |
| GGGGAGACTACCATGTTATT+GGG | + | chr8.1:49747894-49747913 | MS.gene070615:intron | 45.0% | |
| GGGTCACATTTGTAAAGCTG+GGG | - | chr8.1:49746689-49746708 | None:intergenic | 45.0% | |
| GTCCTTTAATCCAGCACTTG+TGG | - | chr8.1:49747633-49747652 | None:intergenic | 45.0% | |
| GTCTCGGCATAGGTAAATGA+AGG | - | chr8.1:49747698-49747717 | None:intergenic | 45.0% | |
| TAGTTGGCGTCTCTATCTGT+AGG | + | chr8.1:49748413-49748432 | MS.gene070615:intron | 45.0% | |
| TCAAGGCTGTTAAGTCTGCA+GGG | + | chr8.1:49744559-49744578 | MS.gene070615:CDS | 45.0% | |
| TCCCCAAATTAGTCGGTCAT+TGG | - | chr8.1:49743990-49744009 | None:intergenic | 45.0% | |
| TGACCAAAGTAATGACCAGC+AGG | - | chr8.1:49746710-49746729 | None:intergenic | 45.0% | |
| TGCTGGATTAAAGGACCAAG+AGG | + | chr8.1:49747637-49747656 | MS.gene070615:CDS | 45.0% | |
| TGGGTGGTTGGAATGTCATT+TGG | - | chr8.1:49745108-49745127 | None:intergenic | 45.0% | |
| TTCAAGGCTGTTAAGTCTGC+AGG | + | chr8.1:49744558-49744577 | MS.gene070615:CDS | 45.0% | |
| TTTGGCGTGTTGCAGATGAT+AGG | + | chr8.1:49747411-49747430 | MS.gene070615:intron | 45.0% | |
| ! | ACTTCTTTTCAGCTGATGCC+AGG | + | chr8.1:49745902-49745921 | MS.gene070615:intron | 45.0% |
| ! | GGATAACCTCGATTGGTGTT+AGG | + | chr8.1:49744580-49744599 | MS.gene070615:CDS | 45.0% |
| ! | TCACTATTTTCTCACCGGAG+GGG | + | chr8.1:49743603-49743622 | MS.gene070615:CDS | 45.0% |
| ! | TGACTTGCAAAATGGGAGTG+AGG | - | chr8.1:49747756-49747775 | None:intergenic | 45.0% |
| ! | TGCTTGTTGAACTAGTGTCC+TGG | - | chr8.1:49745923-49745942 | None:intergenic | 45.0% |
| ! | TTTGAGGTGCCAACATGGTT+GGG | + | chr8.1:49747439-49747458 | MS.gene070615:intron | 45.0% |
| ! | TTTTCCCCTAACACCAATCG+AGG | - | chr8.1:49744589-49744608 | None:intergenic | 45.0% |
| !! | ACCACAACGGGTTATGCTTT+GGG | - | chr8.1:49744049-49744068 | None:intergenic | 45.0% |
| !! | TCTTGGTTTGCGCTTGATGA+TGG | + | chr8.1:49748623-49748642 | MS.gene070615:intron | 45.0% |
| !! | AATTAAATTTAATATGAAAA+TGG | + | chr8.1:49745484-49745503 | MS.gene070615:intron | 5.0% |
| !!! | AGTTTTTTTTTTTTTTTATT+TGG | + | chr8.1:49743948-49743967 | MS.gene070615:intron | 5.0% |
| AACGGCAATGCTGTCAACCT+TGG | - | chr8.1:49744177-49744196 | None:intergenic | 50.0% | |
| ACCCAAAGCATAACCCGTTG+TGG | + | chr8.1:49744045-49744064 | MS.gene070615:intron | 50.0% | |
| ACGGCAATGCTGTCAACCTT+GGG | - | chr8.1:49744176-49744195 | None:intergenic | 50.0% | |
| ACGTTACAAGCTGGCCAATG+TGG | + | chr8.1:49748748-49748767 | MS.gene070615:intron | 50.0% | |
| ATTCCACCGTCCACTAGTAG+GGG | + | chr8.1:49744013-49744032 | MS.gene070615:intron | 50.0% | |
| CAATTCCACCGTCCACTAGT+AGG | + | chr8.1:49744011-49744030 | MS.gene070615:intron | 50.0% | |
| CCAGCTTGTAACGTGTTCTC+AGG | - | chr8.1:49748742-49748761 | None:intergenic | 50.0% | |
| CCTGAGAACACGTTACAAGC+TGG | + | chr8.1:49748739-49748758 | MS.gene070615:intron | 50.0% | |
| CTAGTCCACAAGACCACAAC+GGG | - | chr8.1:49744061-49744080 | None:intergenic | 50.0% | |
| GAACATACCTGTGATGCCAG+TGG | - | chr8.1:49744804-49744823 | None:intergenic | 50.0% | |
| GACCCTGCTGGTCATTACTT+TGG | + | chr8.1:49746704-49746723 | MS.gene070615:CDS | 50.0% | |
| GCAAGGAATCCCAACCATGT+TGG | - | chr8.1:49747451-49747470 | None:intergenic | 50.0% | |
| GCTAGTCCACAAGACCACAA+CGG | - | chr8.1:49744062-49744081 | None:intergenic | 50.0% | |
| GGCCCAATGACCGACTAATT+TGG | + | chr8.1:49743984-49744003 | MS.gene070615:intron | 50.0% | |
| GGCGATGTCACTGTTGAATG+TGG | - | chr8.1:49748587-49748606 | None:intergenic | 50.0% | |
| GTTGGCGTCTCTATCTGTAG+GGG | + | chr8.1:49748415-49748434 | MS.gene070615:intron | 50.0% | |
| TACCTTGGTTTACTGGCCAC+TGG | + | chr8.1:49744785-49744804 | MS.gene070615:CDS | 50.0% | |
| TCTGCAGGGATAACCTCGAT+TGG | + | chr8.1:49744573-49744592 | MS.gene070615:CDS | 50.0% | |
| TTCAATTGGCCCCCTACTAG+TGG | - | chr8.1:49744026-49744045 | None:intergenic | 50.0% | |
| TTCGAACCTGAGACCTTGAG+AGG | + | chr8.1:49744108-49744127 | MS.gene070615:intron | 50.0% | |
| ! | CATAACCCGTTGTGGTCTTG+TGG | + | chr8.1:49744053-49744072 | MS.gene070615:intron | 50.0% |
| ! | CTACTAGTGGACGGTGGAAT+TGG | - | chr8.1:49744013-49744032 | None:intergenic | 50.0% |
| ! | CTAGGTTGGAGTTGTGCAGA+AGG | + | chr8.1:49749523-49749542 | MS.gene070615:intron | 50.0% |
| ! | GGCCAGTAAACCAAGGTACT+TGG | - | chr8.1:49744783-49744802 | None:intergenic | 50.0% |
| ! | GTTTGAGGTGCCAACATGGT+TGG | + | chr8.1:49747438-49747457 | MS.gene070615:intron | 50.0% |
| !! | CGTACGTACCGACTTGAAAG+AGG | - | chr8.1:49743631-49743650 | None:intergenic | 50.0% |
| !! | GACCACAACGGGTTATGCTT+TGG | - | chr8.1:49744050-49744069 | None:intergenic | 50.0% |
| !! | GGCCACAAGTGCTGGATTAA+AGG | + | chr8.1:49747628-49747647 | MS.gene070615:intron | 50.0% |
| ATGAGTAGAGGAAGCGGAGG+TGG | + | chr8.1:49743566-49743585 | MS.gene070615:CDS | 55.0% | |
| ATTGGCCCCCTACTAGTGGA+CGG | - | chr8.1:49744022-49744041 | None:intergenic | 55.0% | |
| CGGCAATGCTGTCAACCTTG+GGG | - | chr8.1:49744175-49744194 | None:intergenic | 55.0% | |
| CTTGGAGTGTGCTCCTCTCA+AGG | - | chr8.1:49744124-49744143 | None:intergenic | 55.0% | |
| GCAATGCTGTCAACCTTGGG+GGG | - | chr8.1:49744173-49744192 | None:intergenic | 55.0% | |
| GGCAATGCTGTCAACCTTGG+GGG | - | chr8.1:49744174-49744193 | None:intergenic | 55.0% | |
| GGTCTCAGGTTCGAATCCTC+TGG | - | chr8.1:49744103-49744122 | None:intergenic | 55.0% | |
| GTGCTCGTCAATTTCGTCGG+TGG | - | chr8.1:49749573-49749592 | None:intergenic | 55.0% | |
| TAACCGATCAAGGACGCGTG+AGG | - | chr8.1:49747540-49747559 | None:intergenic | 55.0% | |
| TACCTATGCCGAGACGGTTC+AGG | + | chr8.1:49747703-49747722 | MS.gene070615:CDS | 55.0% | |
| TACCTGAACCGTCTCGGCAT+AGG | - | chr8.1:49747708-49747727 | None:intergenic | 55.0% | |
| TAGCCTGGTGGCATAGGCTT+GGG | - | chr8.1:49744149-49744168 | None:intergenic | 55.0% | |
| TGCCAGTGGCCAGTAAACCA+AGG | - | chr8.1:49744790-49744809 | None:intergenic | 55.0% | |
| TGTACTCAGGCCACAAGTGC+TGG | + | chr8.1:49747620-49747639 | MS.gene070615:intron | 55.0% | |
| TGTGCTCCTCTCAAGGTCTC+AGG | - | chr8.1:49744117-49744136 | None:intergenic | 55.0% | |
| TTACTGGCCACTGGCATCAC+AGG | + | chr8.1:49744794-49744813 | MS.gene070615:CDS | 55.0% | |
| TTAGCCTGGTGGCATAGGCT+TGG | - | chr8.1:49744150-49744169 | None:intergenic | 55.0% | |
| TTCCACCGTCCACTAGTAGG+GGG | + | chr8.1:49744014-49744033 | MS.gene070615:intron | 55.0% | |
| ! | CTTGAGAGGAGCACACTCCA+AGG | + | chr8.1:49744122-49744141 | MS.gene070615:intron | 55.0% |
| GCACCTCACGCGTCCTTGAT+CGG | + | chr8.1:49747534-49747553 | MS.gene070615:intron | 60.0% | |
| GTGGCATAGGCTTGGGACCT+TGG | - | chr8.1:49744142-49744161 | None:intergenic | 60.0% | |
| !! | ACTTGAAAGAGGCGCCCCTC+CGG | - | chr8.1:49743620-49743639 | None:intergenic | 60.0% |
| !! | GAGGGGCGCCTCTTTCAAGT+CGG | + | chr8.1:49743620-49743639 | MS.gene070615:CDS | 60.0% |
| !! | TCAACCTTGGGGGGTTAGCC+TGG | - | chr8.1:49744164-49744183 | None:intergenic | 60.0% |
| GGTCCCAAGCCTATGCCACC+AGG | + | chr8.1:49744143-49744162 | MS.gene070615:intron | 65.0% | |
| !! | ACCTTGGGGGGTTAGCCTGG+TGG | - | chr8.1:49744161-49744180 | None:intergenic | 65.0% |
| !! | GGGGGTTAGCCTGGTGGCAT+AGG | - | chr8.1:49744155-49744174 | None:intergenic | 65.0% |
| GCCACCAGGCTAACCCCCCA+AGG | + | chr8.1:49744157-49744176 | MS.gene070615:intron | 70.0% | |
| ! | GGCCCCCTACTAGTGGACGG+TGG | - | chr8.1:49744019-49744038 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 49743566 | 49749619 | 49743566 | ID=MS.gene070615 |
| chr8.1 | mRNA | 49743566 | 49749619 | 49743566 | ID=MS.gene070615.t1;Parent=MS.gene070615 |
| chr8.1 | exon | 49743566 | 49743641 | 49743566 | ID=MS.gene070615.t1.exon1;Parent=MS.gene070615.t1 |
| chr8.1 | CDS | 49743566 | 49743641 | 49743566 | ID=cds.MS.gene070615.t1;Parent=MS.gene070615.t1 |
| chr8.1 | exon | 49744550 | 49744644 | 49744550 | ID=MS.gene070615.t1.exon2;Parent=MS.gene070615.t1 |
| chr8.1 | CDS | 49744550 | 49744644 | 49744550 | ID=cds.MS.gene070615.t1;Parent=MS.gene070615.t1 |
| chr8.1 | exon | 49744734 | 49744815 | 49744734 | ID=MS.gene070615.t1.exon3;Parent=MS.gene070615.t1 |
| chr8.1 | CDS | 49744734 | 49744815 | 49744734 | ID=cds.MS.gene070615.t1;Parent=MS.gene070615.t1 |
| chr8.1 | exon | 49745914 | 49746010 | 49745914 | ID=MS.gene070615.t1.exon4;Parent=MS.gene070615.t1 |
| chr8.1 | CDS | 49745914 | 49746010 | 49745914 | ID=cds.MS.gene070615.t1;Parent=MS.gene070615.t1 |
| chr8.1 | exon | 49746428 | 49746486 | 49746428 | ID=MS.gene070615.t1.exon5;Parent=MS.gene070615.t1 |
| chr8.1 | CDS | 49746428 | 49746486 | 49746428 | ID=cds.MS.gene070615.t1;Parent=MS.gene070615.t1 |
| chr8.1 | exon | 49746651 | 49746733 | 49746651 | ID=MS.gene070615.t1.exon6;Parent=MS.gene070615.t1 |
| chr8.1 | CDS | 49746651 | 49746733 | 49746651 | ID=cds.MS.gene070615.t1;Parent=MS.gene070615.t1 |
| chr8.1 | exon | 49747629 | 49747724 | 49747629 | ID=MS.gene070615.t1.exon7;Parent=MS.gene070615.t1 |
| chr8.1 | CDS | 49747629 | 49747724 | 49747629 | ID=cds.MS.gene070615.t1;Parent=MS.gene070615.t1 |
| chr8.1 | exon | 49749250 | 49749309 | 49749250 | ID=MS.gene070615.t1.exon8;Parent=MS.gene070615.t1 |
| chr8.1 | CDS | 49749250 | 49749309 | 49749250 | ID=cds.MS.gene070615.t1;Parent=MS.gene070615.t1 |
| chr8.1 | exon | 49749527 | 49749619 | 49749527 | ID=MS.gene070615.t1.exon9;Parent=MS.gene070615.t1 |
| chr8.1 | CDS | 49749527 | 49749619 | 49749527 | ID=cds.MS.gene070615.t1;Parent=MS.gene070615.t1 |
| Gene Sequence |
| Protein sequence |
