Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94980.t1 | XP_013467179.1 | 92.1 | 365 | 16 | 1 | 1 | 352 | 1 | 365 | 2.00E-172 | 615.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94980.t1 | Q9T0H9 | 70.7 | 335 | 98 | 0 | 18 | 352 | 25 | 359 | 4.5e-117 | 422.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94980.t1 | A0A072VSW1 | 92.1 | 365 | 16 | 1 | 1 | 352 | 1 | 365 | 1.4e-172 | 615.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene94980 | 0.825822 | 3.80E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene94980 | 0.821948 | 3.08E-53 | -1.69E-46 |
| MS.gene049351 | MS.gene94980 | 0.811674 | 6.22E-51 | -1.69E-46 |
| MS.gene049427 | MS.gene94980 | 0.849019 | 4.23E-60 | -1.69E-46 |
| MS.gene049609 | MS.gene94980 | 0.801175 | 1.02E-48 | -1.69E-46 |
| MS.gene049805 | MS.gene94980 | 0.820208 | 7.75E-53 | -1.69E-46 |
| MS.gene050397 | MS.gene94980 | 0.803758 | 2.99E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene94980 | 0.823275 | 1.51E-53 | -1.69E-46 |
| MS.gene050529 | MS.gene94980 | 0.823802 | 1.14E-53 | -1.69E-46 |
| MS.gene050538 | MS.gene94980 | 0.835545 | 1.58E-56 | -1.69E-46 |
| MS.gene050593 | MS.gene94980 | 0.81278 | 3.57E-51 | -1.69E-46 |
| MS.gene050670 | MS.gene94980 | 0.821289 | 4.37E-53 | -1.69E-46 |
| MS.gene050747 | MS.gene94980 | 0.824378 | 8.34E-54 | -1.69E-46 |
| MS.gene050772 | MS.gene94980 | 0.824434 | 8.09E-54 | -1.69E-46 |
| MS.gene050812 | MS.gene94980 | 0.862374 | 5.30E-64 | -1.69E-46 |
| MS.gene05081 | MS.gene94980 | 0.803848 | 2.87E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene94980 | 0.822634 | 2.13E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene94980 | 0.832024 | 1.20E-55 | -1.69E-46 |
| MS.gene051228 | MS.gene94980 | 0.803434 | 3.49E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene94980 | 0.82957 | 4.78E-55 | -1.69E-46 |
| MS.gene051666 | MS.gene94980 | 0.864508 | 1.16E-64 | -1.69E-46 |
| MS.gene051694 | MS.gene94980 | 0.804541 | 2.06E-49 | -1.69E-46 |
| MS.gene051858 | MS.gene94980 | 0.839548 | 1.48E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene94980 | 0.807762 | 4.31E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene94980 | 0.813471 | 2.52E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene94980 | 0.842779 | 2.10E-58 | -1.69E-46 |
| MS.gene052322 | MS.gene94980 | 0.805693 | 1.18E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene94980 | 0.821975 | 3.03E-53 | -1.69E-46 |
| MS.gene052481 | MS.gene94980 | 0.819337 | 1.22E-52 | -1.69E-46 |
| MS.gene052484 | MS.gene94980 | 0.823798 | 1.14E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene94980 | 0.831959 | 1.24E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene94980 | 0.821294 | 4.36E-53 | -1.69E-46 |
| MS.gene052870 | MS.gene94980 | 0.833807 | 4.31E-56 | -1.69E-46 |
| MS.gene052872 | MS.gene94980 | 0.828066 | 1.11E-54 | -1.69E-46 |
| MS.gene053103 | MS.gene94980 | 0.831366 | 1.74E-55 | -1.69E-46 |
| MS.gene053104 | MS.gene94980 | 0.844789 | 6.08E-59 | -1.69E-46 |
| MS.gene053107 | MS.gene94980 | 0.855093 | 7.95E-62 | -1.69E-46 |
| MS.gene053207 | MS.gene94980 | 0.80002 | 1.75E-48 | -1.69E-46 |
| MS.gene053213 | MS.gene94980 | 0.80636 | 8.54E-50 | -1.69E-46 |
| MS.gene053322 | MS.gene94980 | 0.830832 | 2.35E-55 | -1.69E-46 |
| MS.gene053579 | MS.gene94980 | 0.824998 | 5.95E-54 | -1.69E-46 |
| MS.gene053824 | MS.gene94980 | 0.803887 | 2.81E-49 | -1.69E-46 |
| MS.gene053916 | MS.gene94980 | 0.812547 | 4.01E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene94980 | 0.826588 | 2.50E-54 | -1.69E-46 |
| MS.gene054642 | MS.gene94980 | 0.810021 | 1.42E-50 | -1.69E-46 |
| MS.gene054802 | MS.gene94980 | 0.829858 | 4.07E-55 | -1.69E-46 |
| MS.gene054803 | MS.gene94980 | 0.825876 | 3.69E-54 | -1.69E-46 |
| MS.gene054804 | MS.gene94980 | 0.826298 | 2.93E-54 | -1.69E-46 |
| MS.gene05494 | MS.gene94980 | 0.809849 | 1.54E-50 | -1.69E-46 |
| MS.gene054955 | MS.gene94980 | 0.814764 | 1.30E-51 | -1.69E-46 |
| MS.gene05505 | MS.gene94980 | 0.831797 | 1.36E-55 | -1.69E-46 |
| MS.gene055206 | MS.gene94980 | 0.847209 | 1.34E-59 | -1.69E-46 |
| MS.gene055224 | MS.gene94980 | 0.815977 | 7.01E-52 | -1.69E-46 |
| MS.gene055277 | MS.gene94980 | 0.816078 | 6.66E-52 | -1.69E-46 |
| MS.gene055289 | MS.gene94980 | 0.819863 | 9.29E-53 | -1.69E-46 |
| MS.gene055397 | MS.gene94980 | 0.818663 | 1.74E-52 | -1.69E-46 |
| MS.gene055412 | MS.gene94980 | 0.809102 | 2.23E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene94980 | -0.803598 | 3.23E-49 | -1.69E-46 |
| MS.gene055577 | MS.gene94980 | 0.806635 | 7.47E-50 | -1.69E-46 |
| MS.gene055722 | MS.gene94980 | 0.806886 | 6.62E-50 | -1.69E-46 |
| MS.gene055896 | MS.gene94980 | 0.814684 | 1.36E-51 | -1.69E-46 |
| MS.gene05592 | MS.gene94980 | 0.826955 | 2.04E-54 | -1.69E-46 |
| MS.gene055941 | MS.gene94980 | 0.811834 | 5.74E-51 | -1.69E-46 |
| MS.gene056407 | MS.gene94980 | 0.825044 | 5.81E-54 | -1.69E-46 |
| MS.gene056511 | MS.gene94980 | 0.809052 | 2.29E-50 | -1.69E-46 |
| MS.gene056549 | MS.gene94980 | 0.80123 | 9.93E-49 | -1.69E-46 |
| MS.gene056796 | MS.gene94980 | 0.845135 | 4.90E-59 | -1.69E-46 |
| MS.gene056897 | MS.gene94980 | 0.825744 | 3.97E-54 | -1.69E-46 |
| MS.gene056903 | MS.gene94980 | 0.811372 | 7.23E-51 | -1.69E-46 |
| MS.gene057011 | MS.gene94980 | 0.843198 | 1.62E-58 | -1.69E-46 |
| MS.gene057129 | MS.gene94980 | 0.824139 | 9.49E-54 | -1.69E-46 |
| MS.gene057146 | MS.gene94980 | 0.826989 | 2.00E-54 | -1.69E-46 |
| MS.gene057331 | MS.gene94980 | 0.810838 | 9.44E-51 | -1.69E-46 |
| MS.gene057416 | MS.gene94980 | 0.807434 | 5.06E-50 | -1.69E-46 |
| MS.gene057926 | MS.gene94980 | 0.800254 | 1.57E-48 | -1.69E-46 |
| MS.gene057927 | MS.gene94980 | 0.808483 | 3.03E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene94980 | 0.805307 | 1.42E-49 | -1.69E-46 |
| MS.gene058006 | MS.gene94980 | 0.836267 | 1.03E-56 | -1.69E-46 |
| MS.gene058019 | MS.gene94980 | 0.806843 | 6.76E-50 | -1.69E-46 |
| MS.gene05811 | MS.gene94980 | 0.800595 | 1.34E-48 | -1.69E-46 |
| MS.gene058130 | MS.gene94980 | 0.821166 | 4.67E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene94980 | 0.838822 | 2.29E-57 | -1.69E-46 |
| MS.gene058323 | MS.gene94980 | 0.847792 | 9.24E-60 | -1.69E-46 |
| MS.gene058376 | MS.gene94980 | 0.805267 | 1.45E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene94980 | 0.839636 | 1.41E-57 | -1.69E-46 |
| MS.gene058838 | MS.gene94980 | 0.804807 | 1.81E-49 | -1.69E-46 |
| MS.gene058928 | MS.gene94980 | 0.808579 | 2.89E-50 | -1.69E-46 |
| MS.gene059029 | MS.gene94980 | 0.801315 | 9.54E-49 | -1.69E-46 |
| MS.gene05907 | MS.gene94980 | 0.809032 | 2.31E-50 | -1.69E-46 |
| MS.gene05934 | MS.gene94980 | 0.847808 | 9.15E-60 | -1.69E-46 |
| MS.gene059366 | MS.gene94980 | 0.802182 | 6.34E-49 | -1.69E-46 |
| MS.gene059536 | MS.gene94980 | 0.848566 | 5.65E-60 | -1.69E-46 |
| MS.gene059676 | MS.gene94980 | 0.828218 | 1.02E-54 | -1.69E-46 |
| MS.gene059688 | MS.gene94980 | 0.822285 | 2.57E-53 | -1.69E-46 |
| MS.gene059692 | MS.gene94980 | 0.81052 | 1.11E-50 | -1.69E-46 |
| MS.gene059695 | MS.gene94980 | 0.818405 | 1.99E-52 | -1.69E-46 |
| MS.gene059708 | MS.gene94980 | 0.814546 | 1.46E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene94980 | 0.80236 | 5.82E-49 | -1.69E-46 |
| MS.gene059902 | MS.gene94980 | 0.837516 | 4.96E-57 | -1.69E-46 |
| MS.gene059960 | MS.gene94980 | 0.885048 | 1.14E-71 | -1.69E-46 |
| MS.gene060193 | MS.gene94980 | 0.849002 | 4.27E-60 | -1.69E-46 |
| MS.gene060403 | MS.gene94980 | 0.811179 | 7.97E-51 | -1.69E-46 |
| MS.gene060804 | MS.gene94980 | 0.851226 | 1.02E-60 | -1.69E-46 |
| MS.gene060818 | MS.gene94980 | 0.843326 | 1.50E-58 | -1.69E-46 |
| MS.gene060837 | MS.gene94980 | 0.811413 | 7.09E-51 | -1.69E-46 |
| MS.gene06090 | MS.gene94980 | 0.831223 | 1.89E-55 | -1.69E-46 |
| MS.gene06092 | MS.gene94980 | 0.828335 | 9.52E-55 | -1.69E-46 |
| MS.gene060986 | MS.gene94980 | 0.802305 | 5.98E-49 | -1.69E-46 |
| MS.gene061041 | MS.gene94980 | 0.848259 | 6.87E-60 | -1.69E-46 |
| MS.gene061051 | MS.gene94980 | -0.810627 | 1.05E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene94980 | 0.816287 | 5.98E-52 | -1.69E-46 |
| MS.gene061154 | MS.gene94980 | 0.806174 | 9.35E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene94980 | 0.851681 | 7.57E-61 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94980.t1 | MTR_1g046730 | 94.795 | 365 | 6 | 1 | 1 | 352 | 1 | 365 | 0.0 | 683 |
| MS.gene94980.t1 | MTR_5g009810 | 45.740 | 223 | 105 | 4 | 136 | 351 | 136 | 349 | 8.49e-48 | 165 |
| MS.gene94980.t1 | MTR_7g079850 | 40.758 | 211 | 118 | 2 | 139 | 349 | 76 | 279 | 1.24e-40 | 144 |
| MS.gene94980.t1 | MTR_1g111390 | 39.556 | 225 | 114 | 5 | 138 | 348 | 7 | 223 | 3.15e-38 | 136 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94980.t1 | AT4G13590 | 70.746 | 335 | 98 | 0 | 18 | 352 | 25 | 359 | 5.51e-157 | 444 |
| MS.gene94980.t1 | AT4G13590 | 70.149 | 335 | 100 | 0 | 18 | 352 | 25 | 359 | 1.61e-155 | 441 |
| MS.gene94980.t1 | AT1G64150 | 48.624 | 218 | 95 | 5 | 137 | 347 | 157 | 364 | 4.09e-46 | 161 |
| MS.gene94980.t1 | AT5G36290 | 42.222 | 225 | 115 | 5 | 131 | 349 | 74 | 289 | 8.47e-39 | 140 |
| MS.gene94980.t1 | AT5G36290 | 42.222 | 225 | 115 | 5 | 131 | 349 | 74 | 289 | 8.47e-39 | 140 |
| MS.gene94980.t1 | AT1G25520 | 39.474 | 228 | 111 | 6 | 138 | 348 | 7 | 224 | 6.01e-36 | 130 |
| MS.gene94980.t1 | AT1G68650 | 39.035 | 228 | 108 | 5 | 138 | 347 | 7 | 221 | 5.33e-34 | 125 |
Find 74 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCATCAGGTTGGTTATT+TGG | 0.099863 | 1.1:+29584512 | MS.gene94980:intron |
| TTAATATTTGTTTCTGAAAT+TGG | 0.138182 | 1.1:+29577627 | MS.gene94980:CDS |
| CAAATCCTCTTGAGATTCTT+TGG | 0.174329 | 1.1:+29583600 | MS.gene94980:CDS |
| AGTAAGATGCAGACAGAAAT+TGG | 0.222922 | 1.1:+29576709 | MS.gene94980:intron |
| TTTCATCAGGTTGGTTATTT+GGG | 0.251861 | 1.1:+29584513 | MS.gene94980:intron |
| AATTTCTTTCAGAGACATTC+TGG | 0.273491 | 1.1:-29576823 | None:intergenic |
| TCAATCCTATCTGTTGTAAT+TGG | 0.287895 | 1.1:+29581912 | MS.gene94980:CDS |
| TTATTCTTTACAGTCTCCTT+GGG | 0.295993 | 1.1:+29584328 | MS.gene94980:intron |
| AAAAGAAATATGAAAGGTTT+AGG | 0.305294 | 1.1:+29576123 | None:intergenic |
| CTTGCAGCAATTGCAAAATC+AGG | 0.333816 | 1.1:+29577585 | MS.gene94980:CDS |
| CTTATTCTTTACAGTCTCCT+TGG | 0.338454 | 1.1:+29584327 | MS.gene94980:intron |
| CCTACTCGAACTTACTTGTT+TGG | 0.344340 | 1.1:-29581965 | None:intergenic |
| AATTGCGCTCGCAGCTGCTC+AGG | 0.354195 | 1.1:+29583986 | MS.gene94980:CDS |
| TCAGCTAGTTCATCAAGTTC+AGG | 0.393960 | 1.1:-29583214 | None:intergenic |
| CTGCATATTCTCCGATTGGC+AGG | 0.397092 | 1.1:-29583099 | None:intergenic |
| CAACGCTAATATTTGATGCT+TGG | 0.397920 | 1.1:-29576763 | None:intergenic |
| AACGCTAATATTTGATGCTT+GGG | 0.399294 | 1.1:-29576762 | None:intergenic |
| ATTCTTTATTGCTGCACTCT+TGG | 0.409806 | 1.1:+29580811 | MS.gene94980:CDS |
| GTAAGATGCAGACAGAAATT+GGG | 0.414311 | 1.1:+29576710 | MS.gene94980:intron |
| GCAACATGCATTGCTATTGT+TGG | 0.419667 | 1.1:+29584386 | MS.gene94980:CDS |
| ATCAAATATTAGCGTTGGAC+CGG | 0.424620 | 1.1:+29576769 | MS.gene94980:CDS |
| CAGGTTGGTTATTTGGGTGG+AGG | 0.435131 | 1.1:+29584519 | MS.gene94980:intron |
| GTTAGGATCAATGGGTGCTC+TGG | 0.445738 | 1.1:+29581881 | MS.gene94980:CDS |
| TTTACAGTCTCCTTGGGGTG+TGG | 0.461676 | 1.1:+29584334 | MS.gene94980:intron |
| GTGGCAAGTGGAGCTATTGC+TGG | 0.467080 | 1.1:+29584353 | MS.gene94980:CDS |
| AGAGGAGCTTGTGAAAGAAA+AGG | 0.481283 | 1.1:+29583240 | MS.gene94980:CDS |
| AGGTTGGTTATTTGGGTGGA+GGG | 0.484602 | 1.1:+29584520 | MS.gene94980:intron |
| TCAAATATTAGCGTTGGACC+GGG | 0.489113 | 1.1:+29576770 | MS.gene94980:CDS |
| TTCAATATTGCAAATGAAAG+AGG | 0.489232 | 1.1:-29576180 | None:intergenic |
| ACAGAAATTGGGGTTGAGCT+TGG | 0.489408 | 1.1:+29576721 | MS.gene94980:CDS |
| CATCAGGTTGGTTATTTGGG+TGG | 0.492256 | 1.1:+29584516 | MS.gene94980:intron |
| TTACTTGTTTGGAACTGAGC+AGG | 0.496197 | 1.1:-29581954 | None:intergenic |
| TCTCCTTGGGGTGTGGCAAG+TGG | 0.497420 | 1.1:+29584341 | MS.gene94980:CDS |
| CATACACCCTTGATTCCAAA+GGG | 0.511728 | 1.1:+29576150 | MS.gene94980:CDS |
| CTACCTACAGCCCTGCCAAT+CGG | 0.512958 | 1.1:+29583088 | MS.gene94980:intron |
| AAACTTACATGGAGATAAAG+TGG | 0.528431 | 1.1:-29576238 | None:intergenic |
| AAAGCTATAGAGACAGGATA+AGG | 0.529515 | 1.1:-29577495 | None:intergenic |
| TAAAATCAATAAAAGACGCA+TGG | 0.530108 | 1.1:+29583149 | MS.gene94980:CDS |
| ACATGCATTGCTATTGTTGG+AGG | 0.530842 | 1.1:+29584389 | MS.gene94980:CDS |
| TTTCTGAAATGTAGTTAGCA+AGG | 0.537790 | 1.1:-29584418 | None:intergenic |
| CTTGGGCTCGAATTGTTCCA+CGG | 0.538454 | 1.1:-29576745 | None:intergenic |
| CGCATGGGATCTTCCTTCAA+AGG | 0.539180 | 1.1:+29583165 | MS.gene94980:CDS |
| AACACAAAAGCTATAGAGAC+AGG | 0.541473 | 1.1:-29577501 | None:intergenic |
| CAAGCATCAAATATTAGCGT+TGG | 0.547870 | 1.1:+29576764 | MS.gene94980:CDS |
| CTTGGCAATGCAATATGAGA+AGG | 0.551638 | 1.1:+29580829 | MS.gene94980:CDS |
| TCACTAATAGCGTTTGTGAA+AGG | 0.557958 | 1.1:+29577546 | MS.gene94980:CDS |
| AAATATTAGCGTTGGACCGG+GGG | 0.559963 | 1.1:+29576772 | MS.gene94980:CDS |
| ACTGCTGCATATTCTCCGAT+TGG | 0.561503 | 1.1:-29583103 | None:intergenic |
| TGCATATTCTCCGATTGGCA+GGG | 0.562749 | 1.1:-29583098 | None:intergenic |
| AAAATCAATAAAAGACGCAT+GGG | 0.563865 | 1.1:+29583150 | MS.gene94980:CDS |
| TTGGGCTCGAATTGTTCCAC+GGG | 0.564020 | 1.1:-29576744 | None:intergenic |
| AATATTGCAAATGAAAGAGG+AGG | 0.573313 | 1.1:-29576177 | None:intergenic |
| TGTTTCTGAAATTGGTGACA+AGG | 0.576306 | 1.1:+29577635 | MS.gene94980:CDS |
| TTATTGCTTCCATAATCCCC+CGG | 0.585329 | 1.1:-29576788 | None:intergenic |
| CAGGCACTGATTGAAAGATA+CGG | 0.586259 | 1.1:-29581935 | None:intergenic |
| GCTCCACTTGCCACACCCCA+AGG | 0.586539 | 1.1:-29584344 | None:intergenic |
| TCATACACCCTTGATTCCAA+AGG | 0.588292 | 1.1:+29576149 | MS.gene94980:CDS |
| CAAATATTAGCGTTGGACCG+GGG | 0.588654 | 1.1:+29576771 | MS.gene94980:CDS |
| CAATTGTTGCAAGCATTGAA+CGG | 0.594096 | 1.1:-29583968 | None:intergenic |
| AATGCAATATGAGAAGGGAT+TGG | 0.594404 | 1.1:+29580835 | MS.gene94980:CDS |
| GAGACAGGATAAGGAATCTG+AGG | 0.595160 | 1.1:-29577486 | None:intergenic |
| CTAATAGCGTTTGTGAAAGG+AGG | 0.597957 | 1.1:+29577549 | MS.gene94980:CDS |
| TATTCTTTACAGTCTCCTTG+GGG | 0.604508 | 1.1:+29584329 | MS.gene94980:intron |
| TTGGGGTTGAGCTTGGCCCG+TGG | 0.609579 | 1.1:+29576728 | MS.gene94980:CDS |
| TACGGCCAATTACAACAGAT+AGG | 0.609783 | 1.1:-29581917 | None:intergenic |
| TAAGATGCAGACAGAAATTG+GGG | 0.617935 | 1.1:+29576711 | MS.gene94980:CDS |
| GATTTCCAAAGAATCTCAAG+AGG | 0.623224 | 1.1:-29583605 | None:intergenic |
| GTAGAGAAATAAGTACAAGA+TGG | 0.624500 | 1.1:-29576210 | None:intergenic |
| TTGGCAATGCAATATGAGAA+GGG | 0.625006 | 1.1:+29580830 | MS.gene94980:CDS |
| GACTGATTTGCCTAGGAATG+GGG | 0.632644 | 1.1:+29583942 | MS.gene94980:intron |
| ATTGCTGCAAGAACTGATGA+AGG | 0.633169 | 1.1:-29577573 | None:intergenic |
| TGATGAACTAGCTGAAGCAG+AGG | 0.638039 | 1.1:+29583222 | MS.gene94980:CDS |
| ACAGGATAAGGAATCTGAGG+AGG | 0.640171 | 1.1:-29577483 | None:intergenic |
| AATATCTTCAGGCATCGCAA+CGG | 0.661954 | 1.1:+29583573 | MS.gene94980:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 29576132 | 29584587 | 29576132 | ID=MS.gene94980 |
| chr1.1 | mRNA | 29576132 | 29584587 | 29576132 | ID=MS.gene94980.t1;Parent=MS.gene94980 |
| chr1.1 | exon | 29576132 | 29576252 | 29576132 | ID=MS.gene94980.t1.exon1;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29576132 | 29576252 | 29576132 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| chr1.1 | exon | 29576711 | 29576870 | 29576711 | ID=MS.gene94980.t1.exon2;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29576711 | 29576870 | 29576711 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| chr1.1 | exon | 29577476 | 29577656 | 29577476 | ID=MS.gene94980.t1.exon3;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29577476 | 29577656 | 29577476 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| chr1.1 | exon | 29580809 | 29580856 | 29580809 | ID=MS.gene94980.t1.exon4;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29580809 | 29580856 | 29580809 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| chr1.1 | exon | 29581876 | 29581972 | 29581876 | ID=MS.gene94980.t1.exon5;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29581876 | 29581972 | 29581876 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| chr1.1 | exon | 29583098 | 29583261 | 29583098 | ID=MS.gene94980.t1.exon6;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29583098 | 29583261 | 29583098 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| chr1.1 | exon | 29583584 | 29583649 | 29583584 | ID=MS.gene94980.t1.exon7;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29583584 | 29583649 | 29583584 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| chr1.1 | exon | 29583957 | 29584007 | 29583957 | ID=MS.gene94980.t1.exon8;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29583957 | 29584007 | 29583957 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| chr1.1 | exon | 29584341 | 29584445 | 29584341 | ID=MS.gene94980.t1.exon9;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29584341 | 29584445 | 29584341 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| chr1.1 | exon | 29584522 | 29584587 | 29584522 | ID=MS.gene94980.t1.exon10;Parent=MS.gene94980.t1 |
| chr1.1 | CDS | 29584522 | 29584587 | 29584522 | ID=cds.MS.gene94980.t1;Parent=MS.gene94980.t1 |
| Gene Sequence |
| Protein sequence |
