Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59400.t1 | AFK40071.1 | 99.5 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 1.30E-118 | 435.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59400.t1 | Q43187 | 87.3 | 197 | 25 | 0 | 17 | 213 | 15 | 211 | 6.3e-98 | 358.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59400.t1 | G7KEZ6 | 99.5 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 9.3e-119 | 435.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene59400 | -0.819924 | 8.99E-53 | -1.69E-46 |
| MS.gene049217 | MS.gene59400 | -0.852502 | 4.43E-61 | -1.69E-46 |
| MS.gene049222 | MS.gene59400 | -0.868796 | 5.00E-66 | -1.69E-46 |
| MS.gene049265 | MS.gene59400 | 0.825696 | 4.07E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene59400 | -0.832766 | 7.84E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene59400 | -0.823996 | 1.03E-53 | -1.69E-46 |
| MS.gene04932 | MS.gene59400 | 0.807346 | 5.29E-50 | -1.69E-46 |
| MS.gene049425 | MS.gene59400 | 0.821977 | 3.03E-53 | -1.69E-46 |
| MS.gene049427 | MS.gene59400 | -0.811092 | 8.32E-51 | -1.69E-46 |
| MS.gene049609 | MS.gene59400 | -0.805049 | 1.61E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene59400 | 0.80414 | 2.49E-49 | -1.69E-46 |
| MS.gene049633 | MS.gene59400 | -0.840791 | 7.03E-58 | -1.69E-46 |
| MS.gene049634 | MS.gene59400 | 0.806237 | 9.07E-50 | -1.69E-46 |
| MS.gene049805 | MS.gene59400 | -0.827218 | 1.77E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene59400 | -0.820356 | 7.16E-53 | -1.69E-46 |
| MS.gene050165 | MS.gene59400 | -0.824524 | 7.71E-54 | -1.69E-46 |
| MS.gene050323 | MS.gene59400 | -0.820055 | 8.40E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene59400 | -0.806594 | 7.63E-50 | -1.69E-46 |
| MS.gene050338 | MS.gene59400 | 0.805539 | 1.27E-49 | -1.69E-46 |
| MS.gene050380 | MS.gene59400 | 0.811728 | 6.05E-51 | -1.69E-46 |
| MS.gene050444 | MS.gene59400 | -0.845235 | 4.61E-59 | -1.69E-46 |
| MS.gene050504 | MS.gene59400 | -0.820237 | 7.63E-53 | -1.69E-46 |
| MS.gene050518 | MS.gene59400 | -0.804551 | 2.05E-49 | -1.69E-46 |
| MS.gene050538 | MS.gene59400 | -0.851105 | 1.10E-60 | -1.69E-46 |
| MS.gene050577 | MS.gene59400 | -0.800445 | 1.44E-48 | -1.69E-46 |
| MS.gene050593 | MS.gene59400 | -0.821146 | 4.71E-53 | -1.69E-46 |
| MS.gene050612 | MS.gene59400 | -0.826128 | 3.21E-54 | -1.69E-46 |
| MS.gene050710 | MS.gene59400 | 0.831098 | 2.02E-55 | -1.69E-46 |
| MS.gene050747 | MS.gene59400 | -0.838805 | 2.31E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene59400 | -0.823936 | 1.06E-53 | -1.69E-46 |
| MS.gene05079 | MS.gene59400 | 0.801062 | 1.08E-48 | -1.69E-46 |
| MS.gene050809 | MS.gene59400 | 0.892267 | 1.86E-74 | -1.69E-46 |
| MS.gene05080 | MS.gene59400 | -0.831331 | 1.77E-55 | -1.69E-46 |
| MS.gene05081 | MS.gene59400 | -0.815434 | 9.26E-52 | -1.69E-46 |
| MS.gene050868 | MS.gene59400 | -0.842026 | 3.32E-58 | -1.69E-46 |
| MS.gene050871 | MS.gene59400 | -0.840449 | 8.64E-58 | -1.69E-46 |
| MS.gene050950 | MS.gene59400 | -0.846957 | 1.57E-59 | -1.69E-46 |
| MS.gene05104 | MS.gene59400 | 0.840782 | 7.07E-58 | -1.69E-46 |
| MS.gene051138 | MS.gene59400 | 0.80931 | 2.02E-50 | -1.69E-46 |
| MS.gene051228 | MS.gene59400 | -0.827539 | 1.48E-54 | -1.69E-46 |
| MS.gene051617 | MS.gene59400 | -0.824702 | 7.00E-54 | -1.69E-46 |
| MS.gene051632 | MS.gene59400 | 0.802151 | 6.43E-49 | -1.69E-46 |
| MS.gene051651 | MS.gene59400 | 0.810057 | 1.39E-50 | -1.69E-46 |
| MS.gene051666 | MS.gene59400 | -0.844832 | 5.92E-59 | -1.69E-46 |
| MS.gene051694 | MS.gene59400 | -0.821954 | 3.07E-53 | -1.69E-46 |
| MS.gene051734 | MS.gene59400 | -0.828154 | 1.05E-54 | -1.69E-46 |
| MS.gene051810 | MS.gene59400 | -0.813468 | 2.52E-51 | -1.69E-46 |
| MS.gene051838 | MS.gene59400 | -0.834117 | 3.61E-56 | -1.69E-46 |
| MS.gene051858 | MS.gene59400 | -0.836021 | 1.19E-56 | -1.69E-46 |
| MS.gene051863 | MS.gene59400 | 0.816902 | 4.35E-52 | -1.69E-46 |
| MS.gene051907 | MS.gene59400 | 0.833079 | 6.55E-56 | -1.69E-46 |
| MS.gene05234 | MS.gene59400 | 0.81257 | 3.97E-51 | -1.69E-46 |
| MS.gene052379 | MS.gene59400 | -0.849634 | 2.85E-60 | -1.69E-46 |
| MS.gene052484 | MS.gene59400 | -0.803585 | 3.25E-49 | -1.69E-46 |
| MS.gene052615 | MS.gene59400 | -0.812267 | 4.62E-51 | -1.69E-46 |
| MS.gene052702 | MS.gene59400 | 0.80362 | 3.20E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene59400 | -0.862237 | 5.84E-64 | -1.69E-46 |
| MS.gene052872 | MS.gene59400 | -0.866418 | 2.89E-65 | -1.69E-46 |
| MS.gene053103 | MS.gene59400 | -0.800156 | 1.65E-48 | -1.69E-46 |
| MS.gene053104 | MS.gene59400 | -0.847884 | 8.72E-60 | -1.69E-46 |
| MS.gene053107 | MS.gene59400 | -0.800518 | 1.39E-48 | -1.69E-46 |
| MS.gene053108 | MS.gene59400 | 0.816206 | 6.23E-52 | -1.69E-46 |
| MS.gene053203 | MS.gene59400 | -0.822782 | 1.97E-53 | -1.69E-46 |
| MS.gene053213 | MS.gene59400 | -0.810181 | 1.31E-50 | -1.69E-46 |
| MS.gene053286 | MS.gene59400 | -0.804218 | 2.40E-49 | -1.69E-46 |
| MS.gene053322 | MS.gene59400 | -0.821707 | 3.50E-53 | -1.69E-46 |
| MS.gene053420 | MS.gene59400 | 0.807421 | 5.10E-50 | -1.69E-46 |
| MS.gene053421 | MS.gene59400 | 0.825344 | 4.93E-54 | -1.69E-46 |
| MS.gene053479 | MS.gene59400 | -0.81608 | 6.65E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene59400 | -0.814705 | 1.34E-51 | -1.69E-46 |
| MS.gene053579 | MS.gene59400 | -0.81475 | 1.31E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene59400 | -0.81289 | 3.38E-51 | -1.69E-46 |
| MS.gene053776 | MS.gene59400 | 0.829985 | 3.79E-55 | -1.69E-46 |
| MS.gene053824 | MS.gene59400 | -0.838469 | 2.82E-57 | -1.69E-46 |
| MS.gene053916 | MS.gene59400 | -0.810186 | 1.31E-50 | -1.69E-46 |
| MS.gene053920 | MS.gene59400 | 0.807882 | 4.07E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene59400 | -0.809894 | 1.51E-50 | -1.69E-46 |
| MS.gene054290 | MS.gene59400 | 0.842329 | 2.76E-58 | -1.69E-46 |
| MS.gene054408 | MS.gene59400 | -0.809133 | 2.20E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene59400 | -0.848724 | 5.11E-60 | -1.69E-46 |
| MS.gene054706 | MS.gene59400 | 0.861249 | 1.17E-63 | -1.69E-46 |
| MS.gene054707 | MS.gene59400 | 0.821555 | 3.79E-53 | -1.69E-46 |
| MS.gene054742 | MS.gene59400 | 0.807183 | 5.72E-50 | -1.69E-46 |
| MS.gene054884 | MS.gene59400 | 0.820274 | 7.48E-53 | -1.69E-46 |
| MS.gene054954 | MS.gene59400 | -0.802647 | 5.08E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene59400 | -0.800114 | 1.68E-48 | -1.69E-46 |
| MS.gene055154 | MS.gene59400 | 0.807972 | 3.89E-50 | -1.69E-46 |
| MS.gene055206 | MS.gene59400 | -0.858581 | 7.47E-63 | -1.69E-46 |
| MS.gene055224 | MS.gene59400 | -0.810365 | 1.20E-50 | -1.69E-46 |
| MS.gene055289 | MS.gene59400 | -0.833314 | 5.73E-56 | -1.69E-46 |
| MS.gene055502 | MS.gene59400 | -0.86155 | 9.49E-64 | -1.69E-46 |
| MS.gene055536 | MS.gene59400 | 0.825486 | 4.57E-54 | -1.69E-46 |
| MS.gene055577 | MS.gene59400 | -0.86289 | 3.68E-64 | -1.69E-46 |
| MS.gene055748 | MS.gene59400 | -0.81268 | 3.75E-51 | -1.69E-46 |
| MS.gene055750 | MS.gene59400 | -0.800523 | 1.38E-48 | -1.69E-46 |
| MS.gene055751 | MS.gene59400 | -0.80816 | 3.55E-50 | -1.69E-46 |
| MS.gene05589 | MS.gene59400 | -0.804643 | 1.96E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene59400 | -0.808639 | 2.81E-50 | -1.69E-46 |
| MS.gene055941 | MS.gene59400 | -0.836339 | 9.91E-57 | -1.69E-46 |
| MS.gene055956 | MS.gene59400 | 0.813265 | 2.79E-51 | -1.69E-46 |
| MS.gene056224 | MS.gene59400 | 0.80923 | 2.10E-50 | -1.69E-46 |
| MS.gene056387 | MS.gene59400 | -0.824131 | 9.53E-54 | -1.69E-46 |
| MS.gene056487 | MS.gene59400 | -0.825054 | 5.78E-54 | -1.69E-46 |
| MS.gene056504 | MS.gene59400 | -0.818633 | 1.77E-52 | -1.69E-46 |
| MS.gene056510 | MS.gene59400 | -0.806005 | 1.01E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene59400 | -0.808888 | 2.48E-50 | -1.69E-46 |
| MS.gene056549 | MS.gene59400 | -0.835056 | 2.09E-56 | -1.69E-46 |
| MS.gene056590 | MS.gene59400 | 0.825349 | 4.92E-54 | -1.69E-46 |
| MS.gene056591 | MS.gene59400 | 0.82539 | 4.81E-54 | -1.69E-46 |
| MS.gene056618 | MS.gene59400 | 0.830775 | 2.43E-55 | -1.69E-46 |
| MS.gene056657 | MS.gene59400 | -0.83656 | 8.71E-57 | -1.69E-46 |
| MS.gene056678 | MS.gene59400 | 0.807353 | 5.27E-50 | -1.69E-46 |
| MS.gene056688 | MS.gene59400 | 0.832968 | 6.98E-56 | -1.69E-46 |
| MS.gene056692 | MS.gene59400 | -0.81786 | 2.65E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene59400 | 0.854333 | 1.32E-61 | -1.69E-46 |
| MS.gene056857 | MS.gene59400 | 0.824319 | 8.61E-54 | -1.69E-46 |
| MS.gene056897 | MS.gene59400 | -0.80377 | 2.97E-49 | -1.69E-46 |
| MS.gene056946 | MS.gene59400 | -0.800994 | 1.11E-48 | -1.69E-46 |
| MS.gene057011 | MS.gene59400 | -0.803291 | 3.74E-49 | -1.69E-46 |
| MS.gene057076 | MS.gene59400 | -0.807129 | 5.88E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene59400 | -0.824863 | 6.41E-54 | -1.69E-46 |
| MS.gene057416 | MS.gene59400 | -0.815341 | 9.72E-52 | -1.69E-46 |
| MS.gene057658 | MS.gene59400 | -0.817434 | 3.31E-52 | -1.69E-46 |
| MS.gene057717 | MS.gene59400 | 0.83461 | 2.71E-56 | -1.69E-46 |
| MS.gene057856 | MS.gene59400 | -0.801406 | 9.14E-49 | -1.69E-46 |
| MS.gene057857 | MS.gene59400 | -0.800543 | 1.37E-48 | -1.69E-46 |
| MS.gene057926 | MS.gene59400 | -0.847193 | 1.35E-59 | -1.69E-46 |
| MS.gene058067 | MS.gene59400 | 0.800005 | 1.77E-48 | -1.69E-46 |
| MS.gene058093 | MS.gene59400 | 0.802486 | 5.48E-49 | -1.69E-46 |
| MS.gene058130 | MS.gene59400 | -0.800027 | 1.75E-48 | -1.69E-46 |
| MS.gene058158 | MS.gene59400 | 0.848814 | 4.82E-60 | -1.69E-46 |
| MS.gene058175 | MS.gene59400 | 0.806127 | 9.57E-50 | -1.69E-46 |
| MS.gene058338 | MS.gene59400 | -0.807474 | 4.97E-50 | -1.69E-46 |
| MS.gene05837 | MS.gene59400 | -0.836706 | 8.00E-57 | -1.69E-46 |
| MS.gene058416 | MS.gene59400 | 0.809944 | 1.47E-50 | -1.69E-46 |
| MS.gene058419 | MS.gene59400 | -0.833708 | 4.57E-56 | -1.69E-46 |
| MS.gene058544 | MS.gene59400 | -0.835392 | 1.72E-56 | -1.69E-46 |
| MS.gene058603 | MS.gene59400 | 0.814471 | 1.51E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene59400 | -0.802153 | 6.42E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene59400 | -0.814843 | 1.25E-51 | -1.69E-46 |
| MS.gene058838 | MS.gene59400 | -0.819234 | 1.29E-52 | -1.69E-46 |
| MS.gene05883 | MS.gene59400 | -0.805769 | 1.14E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene59400 | 0.835761 | 1.39E-56 | -1.69E-46 |
| MS.gene059022 | MS.gene59400 | -0.801705 | 7.94E-49 | -1.69E-46 |
| MS.gene059023 | MS.gene59400 | -0.832646 | 8.39E-56 | -1.69E-46 |
| MS.gene059079 | MS.gene59400 | -0.810199 | 1.30E-50 | -1.69E-46 |
| MS.gene05913 | MS.gene59400 | -0.831701 | 1.44E-55 | -1.69E-46 |
| MS.gene05914 | MS.gene59400 | -0.825576 | 4.35E-54 | -1.69E-46 |
| MS.gene05926 | MS.gene59400 | 0.816937 | 4.27E-52 | -1.69E-46 |
| MS.gene05934 | MS.gene59400 | -0.871025 | 9.35E-67 | -1.69E-46 |
| MS.gene059526 | MS.gene59400 | 0.827291 | 1.70E-54 | -1.69E-46 |
| MS.gene059536 | MS.gene59400 | -0.845027 | 5.24E-59 | -1.69E-46 |
| MS.gene059677 | MS.gene59400 | -0.824191 | 9.23E-54 | -1.69E-46 |
| MS.gene059699 | MS.gene59400 | 0.837679 | 4.51E-57 | -1.69E-46 |
| MS.gene059703 | MS.gene59400 | 0.833515 | 5.10E-56 | -1.69E-46 |
| MS.gene059718 | MS.gene59400 | -0.820618 | 6.24E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene59400 | -0.824507 | 7.78E-54 | -1.69E-46 |
| MS.gene059902 | MS.gene59400 | -0.833514 | 5.11E-56 | -1.69E-46 |
| MS.gene059960 | MS.gene59400 | -0.817466 | 3.25E-52 | -1.69E-46 |
| MS.gene060405 | MS.gene59400 | 0.818298 | 2.11E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene59400 | -0.859611 | 3.67E-63 | -1.69E-46 |
| MS.gene060804 | MS.gene59400 | -0.845522 | 3.85E-59 | -1.69E-46 |
| MS.gene060818 | MS.gene59400 | -0.859049 | 5.41E-63 | -1.69E-46 |
| MS.gene060823 | MS.gene59400 | 0.819555 | 1.09E-52 | -1.69E-46 |
| MS.gene06092 | MS.gene59400 | -0.824478 | 7.90E-54 | -1.69E-46 |
| MS.gene060982 | MS.gene59400 | -0.815049 | 1.13E-51 | -1.69E-46 |
| MS.gene061041 | MS.gene59400 | -0.848975 | 4.35E-60 | -1.69E-46 |
| MS.gene061134 | MS.gene59400 | -0.803004 | 4.29E-49 | -1.69E-46 |
| MS.gene061150 | MS.gene59400 | -0.809864 | 1.53E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59400.t1 | MTR_5g020840 | 99.531 | 213 | 1 | 0 | 1 | 213 | 1 | 213 | 7.99e-159 | 437 |
| MS.gene59400.t1 | MTR_8g077180 | 76.549 | 226 | 40 | 2 | 1 | 213 | 1 | 226 | 1.19e-127 | 359 |
| MS.gene59400.t1 | MTR_1g068810 | 82.741 | 197 | 34 | 0 | 17 | 213 | 52 | 248 | 3.22e-126 | 356 |
| MS.gene59400.t1 | MTR_1g068810 | 82.741 | 197 | 34 | 0 | 17 | 213 | 56 | 252 | 3.63e-126 | 356 |
| MS.gene59400.t1 | MTR_1g068810 | 82.741 | 197 | 34 | 0 | 17 | 213 | 33 | 229 | 4.28e-126 | 355 |
| MS.gene59400.t1 | MTR_8g024050 | 76.777 | 211 | 49 | 0 | 3 | 213 | 47 | 257 | 9.10e-126 | 355 |
| MS.gene59400.t1 | MTR_1g068810 | 82.741 | 197 | 34 | 0 | 17 | 213 | 20 | 216 | 1.07e-125 | 354 |
| MS.gene59400.t1 | MTR_1g068810 | 82.741 | 197 | 34 | 0 | 17 | 213 | 28 | 224 | 1.15e-125 | 354 |
| MS.gene59400.t1 | MTR_7g118340 | 82.234 | 197 | 35 | 0 | 17 | 213 | 23 | 219 | 2.17e-125 | 353 |
| MS.gene59400.t1 | MTR_1g068810 | 72.444 | 225 | 34 | 1 | 17 | 213 | 56 | 280 | 1.08e-119 | 341 |
| MS.gene59400.t1 | MTR_1g068810 | 72.444 | 225 | 34 | 1 | 17 | 213 | 20 | 244 | 1.82e-119 | 339 |
| MS.gene59400.t1 | MTR_1g096640 | 80.526 | 190 | 37 | 0 | 11 | 200 | 13 | 202 | 2.94e-116 | 330 |
| MS.gene59400.t1 | MTR_1g068810 | 72.642 | 212 | 30 | 1 | 17 | 200 | 20 | 231 | 3.35e-112 | 320 |
| MS.gene59400.t1 | MTR_8g024050 | 80.000 | 170 | 34 | 0 | 3 | 172 | 2 | 171 | 4.92e-104 | 298 |
| MS.gene59400.t1 | MTR_1g112450 | 63.462 | 52 | 17 | 1 | 132 | 181 | 63 | 114 | 6.91e-16 | 72.8 |
| MS.gene59400.t1 | MTR_2g010430 | 32.919 | 161 | 85 | 5 | 36 | 174 | 82 | 241 | 1.48e-15 | 73.9 |
| MS.gene59400.t1 | MTR_1g112430 | 85.714 | 28 | 4 | 0 | 133 | 160 | 39 | 66 | 2.07e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59400.t1 | AT1G01050 | 83.249 | 197 | 33 | 0 | 17 | 213 | 16 | 212 | 8.70e-128 | 359 |
| MS.gene59400.t1 | AT1G01050 | 83.249 | 197 | 33 | 0 | 17 | 213 | 16 | 212 | 8.70e-128 | 359 |
| MS.gene59400.t1 | AT3G53620 | 83.249 | 197 | 33 | 0 | 17 | 213 | 20 | 216 | 5.42e-127 | 357 |
| MS.gene59400.t1 | AT2G46860 | 83.249 | 197 | 33 | 0 | 17 | 213 | 20 | 216 | 1.95e-125 | 353 |
| MS.gene59400.t1 | AT2G18230 | 82.564 | 195 | 34 | 0 | 19 | 213 | 24 | 218 | 7.72e-123 | 347 |
| MS.gene59400.t1 | AT4G01480 | 79.695 | 197 | 40 | 0 | 17 | 213 | 20 | 216 | 3.72e-121 | 342 |
| MS.gene59400.t1 | AT4G01480 | 79.695 | 197 | 40 | 0 | 17 | 213 | 20 | 216 | 3.72e-121 | 342 |
| MS.gene59400.t1 | AT5G09650 | 33.133 | 166 | 88 | 5 | 36 | 179 | 92 | 256 | 3.91e-16 | 75.5 |
Find 54 sgRNAs with CRISPR-Local
Find 198 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGGCAGGTGATTGAAAT+TGG | 0.190283 | 5.4:+12730310 | MS.gene59400:intron |
| TTCCTCCGTGCTCGTGCTAT+TGG | 0.259844 | 5.4:+12731149 | MS.gene59400:CDS |
| TCTGTATAATGGCGGAATTC+AGG | 0.260442 | 5.4:-12731751 | None:intergenic |
| CTTACATAGTTGAGAGCTTA+AGG | 0.321086 | 5.4:+12732494 | MS.gene59400:CDS |
| CAGTGATCCTATGGATGTTC+TGG | 0.337131 | 5.4:+12730989 | MS.gene59400:CDS |
| CAAGACAAGTGGACTTATAA+AGG | 0.377557 | 5.4:+12730363 | MS.gene59400:CDS |
| AGTATTCTTTCATTGAGCTT+AGG | 0.377855 | 5.4:-12729445 | None:intergenic |
| GTATTCTTTCATTGAGCTTA+GGG | 0.385169 | 5.4:-12729444 | None:intergenic |
| GCTCTTTGATGTCTGTATAA+TGG | 0.387260 | 5.4:-12731762 | None:intergenic |
| TGAAATTGGCAAAGGAAGTA+AGG | 0.411821 | 5.4:+12730324 | MS.gene59400:CDS |
| CTGTATAATGGCGGAATTCA+GGG | 0.428586 | 5.4:-12731750 | None:intergenic |
| CCTTGGCATGATGTAGAGAT+AGG | 0.436662 | 5.4:+12729502 | MS.gene59400:CDS |
| TTGAAAACTGATGGAGCTCC+TGG | 0.438536 | 5.4:-12730021 | None:intergenic |
| TGAAATAAGAAGATTCTTTG+AGG | 0.445984 | 5.4:+12731804 | MS.gene59400:CDS |
| GGATGTTCTGGTTCTGATGC+AGG | 0.447786 | 5.4:+12731001 | MS.gene59400:CDS |
| AGCTCACATGGAATACTTGA+TGG | 0.473951 | 5.4:-12732317 | None:intergenic |
| AGGATCACTGTCTTCACAAA+TGG | 0.475465 | 5.4:-12730976 | None:intergenic |
| AGGAAGGTGCCGGGTAGCAC+AGG | 0.496025 | 5.4:-12731131 | None:intergenic |
| GAACTGTTGCTGCTCACCCT+TGG | 0.496264 | 5.4:+12729485 | MS.gene59400:CDS |
| ACGAGCACGGAGGAAGGTGC+CGG | 0.501988 | 5.4:-12731141 | None:intergenic |
| TGATCGTATTCTTTACTCAT+CGG | 0.503153 | 5.4:+12730917 | MS.gene59400:CDS |
| TTGTGAAGACAGTGATCCTA+TGG | 0.514972 | 5.4:+12730980 | MS.gene59400:CDS |
| CTTACACAGTTGAAAACTGA+TGG | 0.520205 | 5.4:-12730030 | None:intergenic |
| AAGTAAGGTTAAGTATGAGC+TGG | 0.529577 | 5.4:+12730339 | MS.gene59400:CDS |
| ATCATGACGGATCAAATGAA+TGG | 0.532018 | 5.4:+12729404 | MS.gene59400:CDS |
| GCATCAACGGCAGACTCAGC+TGG | 0.536658 | 5.4:-12732295 | None:intergenic |
| CTGTCTTCACAAATGGTTCG+TGG | 0.541096 | 5.4:-12730969 | None:intergenic |
| GGAATACTTGATGGCATCAA+CGG | 0.543163 | 5.4:-12732308 | None:intergenic |
| GGGATAAAACCGTAGTTGTG+TGG | 0.550580 | 5.4:-12730948 | None:intergenic |
| CGAGCACGGAGGAAGGTGCC+GGG | 0.550719 | 5.4:-12731140 | None:intergenic |
| CCTATCTCTACATCATGCCA+AGG | 0.552129 | 5.4:-12729502 | None:intergenic |
| GAGCAGGAGCCTGTGCTACC+CGG | 0.553776 | 5.4:+12731122 | MS.gene59400:intron |
| AGAGCTTCCTCCACATCGGT+TGG | 0.560428 | 5.4:+12731780 | MS.gene59400:CDS |
| ACTTCTACCTGGTCAATCAT+CGG | 0.565683 | 5.4:-12731179 | None:intergenic |
| GTTGTCTACCCACACAACTA+CGG | 0.573385 | 5.4:+12730939 | MS.gene59400:CDS |
| AATTGTGGTGCAGGGTGAGA+GGG | 0.573996 | 5.4:+12731696 | MS.gene59400:intron |
| AATAGCACGAGCACGGAGGA+AGG | 0.581178 | 5.4:-12731147 | None:intergenic |
| GGATAAAACCGTAGTTGTGT+GGG | 0.585743 | 5.4:-12730947 | None:intergenic |
| GAATACTCTCTTCAATGTCA+CGG | 0.588678 | 5.4:+12729461 | MS.gene59400:CDS |
| TGTCTTCACAAATGGTTCGT+GGG | 0.601852 | 5.4:-12730968 | None:intergenic |
| ATTTCAGCCAACCGATGTGG+AGG | 0.601981 | 5.4:-12731787 | None:intergenic |
| CTTATTTCAGCCAACCGATG+TGG | 0.603146 | 5.4:-12731790 | None:intergenic |
| ACTAATGCCGATGATTGACC+AGG | 0.611236 | 5.4:+12731172 | MS.gene59400:CDS |
| GAATTGTGGTGCAGGGTGAG+AGG | 0.616336 | 5.4:+12731695 | MS.gene59400:intron |
| TTAGTCCAATAGCACGAGCA+CGG | 0.634148 | 5.4:-12731154 | None:intergenic |
| CAACTATGTAAGAAGCATAG+AGG | 0.643329 | 5.4:-12732483 | None:intergenic |
| TATGAGCTGGACAAGACAAG+TGG | 0.645481 | 5.4:+12730352 | MS.gene59400:CDS |
| GTTGGTATGGCTAATCATGA+CGG | 0.647306 | 5.4:+12729391 | None:intergenic |
| TCAAAGAGCTTCCTCCACAT+CGG | 0.652320 | 5.4:+12731776 | MS.gene59400:CDS |
| CTTTGATGTCTGTATAATGG+CGG | 0.654127 | 5.4:-12731759 | None:intergenic |
| ATCAGAACCAGAACATCCAT+AGG | 0.655108 | 5.4:-12730996 | None:intergenic |
| CAGGTGATTGAAATTGGCAA+AGG | 0.656011 | 5.4:+12730316 | MS.gene59400:intron |
| CTATCTCTACATCATGCCAA+GGG | 0.666160 | 5.4:-12729501 | None:intergenic |
| GTCCAATAGCACGAGCACGG+AGG | 0.771614 | 5.4:-12731151 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAATTAAAATAGCTATT+GGG | - | chr5.4:12731289-12731308 | None:intergenic | 10.0% |
| !! | TAAATAATTAAAATAGCTAT+TGG | - | chr5.4:12731290-12731309 | None:intergenic | 10.0% |
| !! | TTAGTAAATTAAAAAAATCA+TGG | + | chr5.4:12731338-12731357 | MS.gene59400:intron | 10.0% |
| !!! | ATATAATTTTTTTTAAATGC+AGG | + | chr5.4:12729997-12730016 | MS.gene59400:intron | 10.0% |
| !!! | ATTTTAACTGAATTAAAAAT+TGG | + | chr5.4:12731084-12731103 | MS.gene59400:intron | 10.0% |
| !!! | TATAATTTTTTTTAAATGCA+GGG | + | chr5.4:12729998-12730017 | MS.gene59400:intron | 10.0% |
| !!! | TTTTAATTCAGTTAAAATTT+TGG | - | chr5.4:12731082-12731101 | None:intergenic | 10.0% |
| !! | AAAATGAAAATATTCATGTA+AGG | - | chr5.4:12732457-12732476 | None:intergenic | 15.0% |
| !! | AAACTATTTATAATGAATTG+TGG | + | chr5.4:12731681-12731700 | MS.gene59400:intron | 15.0% |
| !! | AAATTATCATTGAAAAATAG+GGG | - | chr5.4:12732120-12732139 | None:intergenic | 15.0% |
| !! | AGAAATTATCATTGAAAAAT+AGG | - | chr5.4:12732122-12732141 | None:intergenic | 15.0% |
| !! | ATACAAACAAAATAGAATAT+GGG | - | chr5.4:12729882-12729901 | None:intergenic | 15.0% |
| !! | GAAATTATCATTGAAAAATA+GGG | - | chr5.4:12732121-12732140 | None:intergenic | 15.0% |
| !! | TATACAAACAAAATAGAATA+TGG | - | chr5.4:12729883-12729902 | None:intergenic | 15.0% |
| !!! | CTTTGTATTTTATTTTGTTT+GGG | + | chr5.4:12731216-12731235 | MS.gene59400:intron | 15.0% |
| !!! | TCTTTGTATTTTATTTTGTT+TGG | + | chr5.4:12731215-12731234 | MS.gene59400:intron | 15.0% |
| !!! | TTTGTATTTTATTTTGTTTG+GGG | + | chr5.4:12731217-12731236 | MS.gene59400:intron | 15.0% |
| !! | AATAAAATACAAAGACAAGT+AGG | - | chr5.4:12731210-12731229 | None:intergenic | 20.0% |
| !! | ATAAACTAAATGCAAATAAC+AGG | - | chr5.4:12731837-12731856 | None:intergenic | 20.0% |
| !! | CACTAATTAAAATAGAACTA+TGG | - | chr5.4:12731457-12731476 | None:intergenic | 20.0% |
| !! | TATTATTTGAGCTTATTTAC+TGG | - | chr5.4:12729843-12729862 | None:intergenic | 20.0% |
| !! | TGATTAAAAGTTATAGATGT+AGG | + | chr5.4:12729951-12729970 | MS.gene59400:intron | 20.0% |
| !! | TTCACTTAGAAAATATGAAT+AGG | - | chr5.4:12730278-12730297 | None:intergenic | 20.0% |
| !!! | ACATGAATATTTTCATTTTC+AGG | + | chr5.4:12732458-12732477 | MS.gene59400:intron | 20.0% |
| !!! | CATGAATATTTTCATTTTCA+GGG | + | chr5.4:12732459-12732478 | MS.gene59400:intron | 20.0% |
| !!! | TAGTTCTATTTTAATTAGTG+AGG | + | chr5.4:12731457-12731476 | MS.gene59400:intron | 20.0% |
| !!! | TGTTATTTGCATTTAGTTTA+TGG | + | chr5.4:12731836-12731855 | MS.gene59400:intron | 20.0% |
| !!! | TTTTTATTTGATCCTTCTAA+CGG | - | chr5.4:12731550-12731569 | None:intergenic | 20.0% |
| ! | AAAACCAAATGACAGATAAA+AGG | - | chr5.4:12731601-12731620 | None:intergenic | 25.0% |
| ! | AAAATGTTAGAAAACTTCCT+TGG | + | chr5.4:12730084-12730103 | MS.gene59400:intron | 25.0% |
| ! | AAATCTCTACTTTGATTAGT+TGG | - | chr5.4:12731653-12731672 | None:intergenic | 25.0% |
| ! | AATACAATATGGTCTATCAA+CGG | - | chr5.4:12730560-12730579 | None:intergenic | 25.0% |
| ! | AGTAAAATCGTTGAAGATTA+AGG | - | chr5.4:12732403-12732422 | None:intergenic | 25.0% |
| ! | AGTTATAATGAATTTGAGCA+TGG | + | chr5.4:12729563-12729582 | MS.gene59400:intron | 25.0% |
| ! | CTAGATTTGTAGTATGAAAA+AGG | - | chr5.4:12732366-12732385 | None:intergenic | 25.0% |
| ! | CTATTTCATAATCATGATCA+TGG | - | chr5.4:12730450-12730469 | None:intergenic | 25.0% |
| ! | GAAAAAAAATTGTTATGAGC+AGG | + | chr5.4:12731106-12731125 | MS.gene59400:intron | 25.0% |
| ! | GTGAAATAAATGTATTTCCA+TGG | + | chr5.4:12730293-12730312 | MS.gene59400:intron | 25.0% |
| ! | TCAATATCAAAAAACGTGTT+TGG | - | chr5.4:12730711-12730730 | None:intergenic | 25.0% |
| ! | TGAAATAAGAAGATTCTTTG+AGG | + | chr5.4:12731804-12731823 | MS.gene59400:CDS | 25.0% |
| ! | TTAAAAAAATCATGGCTAAG+TGG | + | chr5.4:12731346-12731365 | MS.gene59400:intron | 25.0% |
| !!! | AGCTTATGTTGATTTATTTC+TGG | + | chr5.4:12730157-12730176 | MS.gene59400:intron | 25.0% |
| !!! | GCTGTTTTAATAAGCTATTT+TGG | + | chr5.4:12729726-12729745 | MS.gene59400:intron | 25.0% |
| !!! | TCATACTACAAATCTAGTTT+TGG | + | chr5.4:12732369-12732388 | MS.gene59400:intron | 25.0% |
| !!! | TTTTTTCCTAAAGAACATGT+AGG | - | chr5.4:12730424-12730443 | None:intergenic | 25.0% |
| AAAATACAAAGACAAGTAGG+AGG | - | chr5.4:12731207-12731226 | None:intergenic | 30.0% | |
| AATAAATGTATTTCCATGGC+AGG | + | chr5.4:12730297-12730316 | MS.gene59400:intron | 30.0% | |
| AATCCATCATTGAGTATTCA+AGG | - | chr5.4:12730753-12730772 | None:intergenic | 30.0% | |
| ACCATGTTATATCACATACA+GGG | - | chr5.4:12731407-12731426 | None:intergenic | 30.0% | |
| AGTATTCTTTCATTGAGCTT+AGG | - | chr5.4:12729448-12729467 | None:intergenic | 30.0% | |
| AGTTATAGCACTCATATCAT+CGG | - | chr5.4:12730684-12730703 | None:intergenic | 30.0% | |
| ATCCTAGTAACAAATGTACT+TGG | + | chr5.4:12731859-12731878 | MS.gene59400:intron | 30.0% | |
| ATGAATAGGAAACAAGAGTT+TGG | - | chr5.4:12730264-12730283 | None:intergenic | 30.0% | |
| ATTGCATGTTATTGTGCTTT+AGG | + | chr5.4:12730776-12730795 | MS.gene59400:intron | 30.0% | |
| GATAAAATAATCATCCCCAA+GGG | - | chr5.4:12732429-12732448 | None:intergenic | 30.0% | |
| GATTTGTAGTATGAAAAAGG+TGG | - | chr5.4:12732363-12732382 | None:intergenic | 30.0% | |
| GGCATAATTTGATATTCAAG+TGG | + | chr5.4:12730615-12730634 | MS.gene59400:intron | 30.0% | |
| GTATTCTTTCATTGAGCTTA+GGG | - | chr5.4:12729447-12729466 | None:intergenic | 30.0% | |
| GTTGCATATTATGTATAGCA+AGG | - | chr5.4:12730824-12730843 | None:intergenic | 30.0% | |
| TAAACTCCTACATGTTCTTT+AGG | + | chr5.4:12730415-12730434 | MS.gene59400:intron | 30.0% | |
| TAAAGAATACGATCAACCTA+AGG | - | chr5.4:12730912-12730931 | None:intergenic | 30.0% | |
| TCAACATAAGCTCCATAATT+TGG | - | chr5.4:12730149-12730168 | None:intergenic | 30.0% | |
| TCAACCTGAAAATCAATCAT+GGG | - | chr5.4:12732084-12732103 | None:intergenic | 30.0% | |
| TCCTAGTAACAAATGTACTT+GGG | + | chr5.4:12731860-12731879 | MS.gene59400:intron | 30.0% | |
| TGATAAAATAATCATCCCCA+AGG | - | chr5.4:12732430-12732449 | None:intergenic | 30.0% | |
| TGATCGTATTCTTTACTCAT+CGG | + | chr5.4:12730917-12730936 | MS.gene59400:CDS | 30.0% | |
| TTATAATGAATTGTGGTGCA+GGG | + | chr5.4:12731688-12731707 | MS.gene59400:intron | 30.0% | |
| TTCAACCTGAAAATCAATCA+TGG | - | chr5.4:12732085-12732104 | None:intergenic | 30.0% | |
| TTTATAATGAATTGTGGTGC+AGG | + | chr5.4:12731687-12731706 | MS.gene59400:intron | 30.0% | |
| TTTGGTGGAATAATCTATCT+AGG | - | chr5.4:12730246-12730265 | None:intergenic | 30.0% | |
| ! | AACATGTAGGAGTTTAAAGT+AGG | - | chr5.4:12730411-12730430 | None:intergenic | 30.0% |
| ! | ACATGTAGGAGTTTAAAGTA+GGG | - | chr5.4:12730410-12730429 | None:intergenic | 30.0% |
| ! | ATGATTGAGCATGCAATTTT+TGG | + | chr5.4:12731488-12731507 | MS.gene59400:intron | 30.0% |
| ! | ATGTTTTATCGTTTCAGTCA+TGG | - | chr5.4:12731377-12731396 | None:intergenic | 30.0% |
| ! | TGTTTTATCGTTTCAGTCAT+GGG | - | chr5.4:12731376-12731395 | None:intergenic | 30.0% |
| ! | TTGATATCATCTGACGTTTT+AGG | - | chr5.4:12730530-12730549 | None:intergenic | 30.0% |
| ! | TTTTGGATAAAAGTGAAAGC+AGG | - | chr5.4:12731065-12731084 | None:intergenic | 30.0% |
| !! | AACGATTTTACTTTTCCCTT+GGG | + | chr5.4:12732411-12732430 | MS.gene59400:intron | 30.0% |
| !! | AAGGAAACTTGTTATGTATG+CGG | + | chr5.4:12731519-12731538 | MS.gene59400:intron | 30.0% |
| !! | TTTACCCATGATTGATTTTC+AGG | + | chr5.4:12732077-12732096 | MS.gene59400:intron | 30.0% |
| AAAGTAGGGAATAGGGAATA+GGG | - | chr5.4:12730396-12730415 | None:intergenic | 35.0% | |
| AAATAGCCTCACAAAGCTTA+TGG | + | chr5.4:12729817-12729836 | MS.gene59400:intron | 35.0% | |
| AAATGAAAAAGAGCTGTGTG+AGG | + | chr5.4:12731240-12731259 | MS.gene59400:intron | 35.0% | |
| AAGTAAGGTTAAGTATGAGC+TGG | + | chr5.4:12730339-12730358 | MS.gene59400:CDS | 35.0% | |
| AATAGGAAACAAGAGTTTGG+TGG | - | chr5.4:12730261-12730280 | None:intergenic | 35.0% | |
| AATATGGTCTATCAACGGAT+AGG | - | chr5.4:12730555-12730574 | None:intergenic | 35.0% | |
| AATGAAAAAGAGCTGTGTGA+GGG | + | chr5.4:12731241-12731260 | MS.gene59400:intron | 35.0% | |
| AATTCAAATGTGTGCACACA+TGG | - | chr5.4:12732015-12732034 | None:intergenic | 35.0% | |
| ACCAAATGACAGATAAAAGG+AGG | - | chr5.4:12731598-12731617 | None:intergenic | 35.0% | |
| ACCCTGTATGTGATATAACA+TGG | + | chr5.4:12731403-12731422 | MS.gene59400:intron | 35.0% | |
| ACCGAAGCATAATTAACTCA+TGG | + | chr5.4:12730878-12730897 | MS.gene59400:intron | 35.0% | |
| CACCATGTTATATCACATAC+AGG | - | chr5.4:12731408-12731427 | None:intergenic | 35.0% | |
| CATCCTTGAATACTCAATGA+TGG | + | chr5.4:12730747-12730766 | MS.gene59400:intron | 35.0% | |
| CCAAATGACAGATAAAAGGA+GGG | - | chr5.4:12731597-12731616 | None:intergenic | 35.0% | |
| CCCAATAGTTAAGGATGAAA+GGG | + | chr5.4:12730594-12730613 | MS.gene59400:intron | 35.0% | |
| CCCATGAGTTAATTATGCTT+CGG | - | chr5.4:12730882-12730901 | None:intergenic | 35.0% | |
| CCCTTTCATCCTTAACTATT+GGG | - | chr5.4:12730597-12730616 | None:intergenic | 35.0% | |
| CCGAAGCATAATTAACTCAT+GGG | + | chr5.4:12730879-12730898 | MS.gene59400:intron | 35.0% | |
| CCTAGTAACAAATGTACTTG+GGG | + | chr5.4:12731861-12731880 | MS.gene59400:intron | 35.0% | |
| CTTACACAGTTGAAAACTGA+TGG | - | chr5.4:12730033-12730052 | None:intergenic | 35.0% | |
| CTTACATAGTTGAGAGCTTA+AGG | + | chr5.4:12732494-12732513 | MS.gene59400:CDS | 35.0% | |
| CTTTGATGTCTGTATAATGG+CGG | - | chr5.4:12731762-12731781 | None:intergenic | 35.0% | |
| GAAAAGAGAAATAGCTCACA+TGG | - | chr5.4:12732332-12732351 | None:intergenic | 35.0% | |
| GAATACTCTCTTCAATGTCA+CGG | + | chr5.4:12729461-12729480 | MS.gene59400:CDS | 35.0% | |
| GCTCTTTGATGTCTGTATAA+TGG | - | chr5.4:12731765-12731784 | None:intergenic | 35.0% | |
| GTTACACAACTCCACAAAAT+CGG | - | chr5.4:12730508-12730527 | None:intergenic | 35.0% | |
| TAAAGTAGGGAATAGGGAAT+AGG | - | chr5.4:12730397-12730416 | None:intergenic | 35.0% | |
| TATGAAAAAGGTGGAGATCA+TGG | - | chr5.4:12732354-12732373 | None:intergenic | 35.0% | |
| TGAAATTGGCAAAGGAAGTA+AGG | + | chr5.4:12730324-12730343 | MS.gene59400:CDS | 35.0% | |
| TGCAAGTAACATTTCTTCCA+AGG | - | chr5.4:12730104-12730123 | None:intergenic | 35.0% | |
| ! | AGGAGTTTAAAGTAGGGAAT+AGG | - | chr5.4:12730404-12730423 | None:intergenic | 35.0% |
| ! | ATAAGCTTTGTGAGGCTATT+TGG | - | chr5.4:12729818-12729837 | None:intergenic | 35.0% |
| ! | CAACTATGTAAGAAGCATAG+AGG | - | chr5.4:12732486-12732505 | None:intergenic | 35.0% |
| ! | CAAGACAAGTGGACTTATAA+AGG | + | chr5.4:12730363-12730382 | MS.gene59400:CDS | 35.0% |
| ! | GGAGTTTAAAGTAGGGAATA+GGG | - | chr5.4:12730403-12730422 | None:intergenic | 35.0% |
| ! | TAAGCTTTGTGAGGCTATTT+GGG | - | chr5.4:12729817-12729836 | None:intergenic | 35.0% |
| !! | ACGATTTTACTTTTCCCTTG+GGG | + | chr5.4:12732412-12732431 | MS.gene59400:intron | 35.0% |
| !! | ATCATGACGGATCAAATGAA+TGG | + | chr5.4:12729404-12729423 | MS.gene59400:CDS | 35.0% |
| !! | CAACGATTTTACTTTTCCCT+TGG | + | chr5.4:12732410-12732429 | MS.gene59400:intron | 35.0% |
| !!! | AAACCTTGCGGATGTTTTTT+CGG | + | chr5.4:12729529-12729548 | MS.gene59400:intron | 35.0% |
| !!! | GCAATTTTTGGAGCAACAAA+AGG | + | chr5.4:12731500-12731519 | MS.gene59400:intron | 35.0% |
| !!! | TTTTTTTTAAATGCAGGGCC+AGG | + | chr5.4:12730003-12730022 | MS.gene59400:intron | 35.0% |
| ACTTCTACCTGGTCAATCAT+CGG | - | chr5.4:12731182-12731201 | None:intergenic | 40.0% | |
| AGCTCACATGGAATACTTGA+TGG | - | chr5.4:12732320-12732339 | None:intergenic | 40.0% | |
| AGGATCACTGTCTTCACAAA+TGG | - | chr5.4:12730979-12730998 | None:intergenic | 40.0% | |
| ATCAGAACCAGAACATCCAT+AGG | - | chr5.4:12730999-12731018 | None:intergenic | 40.0% | |
| ATGCATCAAACTAGAGGATG+TGG | - | chr5.4:12732208-12732227 | None:intergenic | 40.0% | |
| ATTCCAGATTGCTAGTGTCA+TGG | - | chr5.4:12730205-12730224 | None:intergenic | 40.0% | |
| CAGGTGATTGAAATTGGCAA+AGG | + | chr5.4:12730316-12730335 | MS.gene59400:intron | 40.0% | |
| CGTGCACGGATAATACAATA+TGG | - | chr5.4:12730571-12730590 | None:intergenic | 40.0% | |
| CTATCTCTACATCATGCCAA+GGG | - | chr5.4:12729504-12729523 | None:intergenic | 40.0% | |
| CTCATTCTTCTTGTCTAGTG+TGG | - | chr5.4:12732245-12732264 | None:intergenic | 40.0% | |
| GAATATGGGCGAGTTTAGAT+TGG | - | chr5.4:12729868-12729887 | None:intergenic | 40.0% | |
| GAGATAGGTATGAAACCTTG+CGG | + | chr5.4:12729517-12729536 | MS.gene59400:intron | 40.0% | |
| GCCCAATAGTTAAGGATGAA+AGG | + | chr5.4:12730593-12730612 | MS.gene59400:intron | 40.0% | |
| GCCCTTTCATCCTTAACTAT+TGG | - | chr5.4:12730598-12730617 | None:intergenic | 40.0% | |
| GGATAAAACCGTAGTTGTGT+GGG | - | chr5.4:12730950-12730969 | None:intergenic | 40.0% | |
| GTTACTTGCAGCAGCATTAA+GGG | + | chr5.4:12730114-12730133 | MS.gene59400:intron | 40.0% | |
| TGTCTTCACAAATGGTTCGT+GGG | - | chr5.4:12730971-12730990 | None:intergenic | 40.0% | |
| TTGTGAAGACAGTGATCCTA+TGG | + | chr5.4:12730980-12730999 | MS.gene59400:CDS | 40.0% | |
| ! | ACTCATGGGCTAAATACCTT+AGG | + | chr5.4:12730893-12730912 | MS.gene59400:intron | 40.0% |
| ! | CCCCAAGTACATTTGTTACT+AGG | - | chr5.4:12731864-12731883 | None:intergenic | 40.0% |
| ! | CCCTCCTTTTATCTGTCATT+TGG | + | chr5.4:12731594-12731613 | MS.gene59400:intron | 40.0% |
| ! | CTGTATAATGGCGGAATTCA+GGG | - | chr5.4:12731753-12731772 | None:intergenic | 40.0% |
| ! | GGAATACTTGATGGCATCAA+CGG | - | chr5.4:12732311-12732330 | None:intergenic | 40.0% |
| ! | TCTGTATAATGGCGGAATTC+AGG | - | chr5.4:12731754-12731773 | None:intergenic | 40.0% |
| ! | TGTTACTTGCAGCAGCATTA+AGG | + | chr5.4:12730113-12730132 | MS.gene59400:intron | 40.0% |
| ACTAATGCCGATGATTGACC+AGG | + | chr5.4:12731172-12731191 | MS.gene59400:CDS | 45.0% | |
| ATCATCGGAAATGCATTGCG+AGG | - | chr5.4:12730669-12730688 | None:intergenic | 45.0% | |
| CAAAATCGGAAGGTGAGATG+AGG | - | chr5.4:12730494-12730513 | None:intergenic | 45.0% | |
| CACAACTCCACAAAATCGGA+AGG | - | chr5.4:12730504-12730523 | None:intergenic | 45.0% | |
| CAGTGATCCTATGGATGTTC+TGG | + | chr5.4:12730989-12731008 | MS.gene59400:CDS | 45.0% | |
| CCAATTTCAATCACCTGCCA+TGG | - | chr5.4:12730313-12730332 | None:intergenic | 45.0% | |
| CCATGGCAGGTGATTGAAAT+TGG | + | chr5.4:12730310-12730329 | MS.gene59400:intron | 45.0% | |
| CCTATCTCTACATCATGCCA+AGG | - | chr5.4:12729505-12729524 | None:intergenic | 45.0% | |
| CCTTGGCATGATGTAGAGAT+AGG | + | chr5.4:12729502-12729521 | MS.gene59400:CDS | 45.0% | |
| CTGTCTTCACAAATGGTTCG+TGG | - | chr5.4:12730972-12730991 | None:intergenic | 45.0% | |
| CTTATTTCAGCCAACCGATG+TGG | - | chr5.4:12731793-12731812 | None:intergenic | 45.0% | |
| GGACACATGCATCAAACTAG+AGG | - | chr5.4:12732214-12732233 | None:intergenic | 45.0% | |
| GGGATAAAACCGTAGTTGTG+TGG | - | chr5.4:12730951-12730970 | None:intergenic | 45.0% | |
| GTTGTCTACCCACACAACTA+CGG | + | chr5.4:12730939-12730958 | MS.gene59400:CDS | 45.0% | |
| TAACTATTGGGCTTCGTGCA+CGG | - | chr5.4:12730585-12730604 | None:intergenic | 45.0% | |
| TATGAGCTGGACAAGACAAG+TGG | + | chr5.4:12730352-12730371 | MS.gene59400:CDS | 45.0% | |
| TATGCGGTAACACCGTTAGA+AGG | + | chr5.4:12731535-12731554 | MS.gene59400:intron | 45.0% | |
| TCAAAGAGCTTCCTCCACAT+CGG | + | chr5.4:12731776-12731795 | MS.gene59400:CDS | 45.0% | |
| TCATCGGAAATGCATTGCGA+GGG | - | chr5.4:12730668-12730687 | None:intergenic | 45.0% | |
| TGACCGAAAAAACATCCGCA+AGG | - | chr5.4:12729535-12729554 | None:intergenic | 45.0% | |
| TGCACGAAGCCCAATAGTTA+AGG | + | chr5.4:12730585-12730604 | MS.gene59400:intron | 45.0% | |
| TTAGTCCAATAGCACGAGCA+CGG | - | chr5.4:12731157-12731176 | None:intergenic | 45.0% | |
| TTGAAAACTGATGGAGCTCC+TGG | - | chr5.4:12730024-12730043 | None:intergenic | 45.0% | |
| TTGCCATGACACTAGCAATC+TGG | + | chr5.4:12730199-12730218 | MS.gene59400:intron | 45.0% | |
| ! | CATCTCACCTTCCGATTTTG+TGG | + | chr5.4:12730494-12730513 | MS.gene59400:intron | 45.0% |
| ! | TACTGGCCATAAGCTTTGTG+AGG | - | chr5.4:12729826-12729845 | None:intergenic | 45.0% |
| ! | TTGTCTAGTGTGGCTAGCTA+AGG | - | chr5.4:12732235-12732254 | None:intergenic | 45.0% |
| AATTGTGGTGCAGGGTGAGA+GGG | + | chr5.4:12731696-12731715 | MS.gene59400:intron | 50.0% | |
| AGTAGGAGGCAACTTCTACC+TGG | - | chr5.4:12731193-12731212 | None:intergenic | 50.0% | |
| ATTTCAGCCAACCGATGTGG+AGG | - | chr5.4:12731790-12731809 | None:intergenic | 50.0% | |
| GGGCACGGTCAACCAAATTA+TGG | + | chr5.4:12730134-12730153 | MS.gene59400:intron | 50.0% | |
| TTGCAGCAGCATTAAGGGCA+CGG | + | chr5.4:12730119-12730138 | MS.gene59400:intron | 50.0% | |
| !! | AAGAGCTGTGTGAGGGTGTT+TGG | + | chr5.4:12731248-12731267 | MS.gene59400:intron | 50.0% |
| !! | CTGTGTGAGGGTGTTTGGAA+GGG | + | chr5.4:12731253-12731272 | MS.gene59400:intron | 50.0% |
| !! | GGATGTTCTGGTTCTGATGC+AGG | + | chr5.4:12731001-12731020 | MS.gene59400:CDS | 50.0% |
| !! | TGTGTGAGGGTGTTTGGAAG+GGG | + | chr5.4:12731254-12731273 | MS.gene59400:intron | 50.0% |
| AATAGCACGAGCACGGAGGA+AGG | - | chr5.4:12731150-12731169 | None:intergenic | 55.0% | |
| AGAGCTTCCTCCACATCGGT+TGG | + | chr5.4:12731780-12731799 | MS.gene59400:CDS | 55.0% | |
| GAACTGTTGCTGCTCACCCT+TGG | + | chr5.4:12729485-12729504 | MS.gene59400:CDS | 55.0% | |
| GAATTGTGGTGCAGGGTGAG+AGG | + | chr5.4:12731695-12731714 | MS.gene59400:intron | 55.0% | |
| TTCCTCCGTGCTCGTGCTAT+TGG | + | chr5.4:12731149-12731168 | MS.gene59400:CDS | 55.0% | |
| !! | GCTGTGTGAGGGTGTTTGGA+AGG | + | chr5.4:12731252-12731271 | MS.gene59400:intron | 55.0% |
| !! | GTGTGAGGGTGTTTGGAAGG+GGG | + | chr5.4:12731255-12731274 | MS.gene59400:intron | 55.0% |
| !! | TGTGAGGGTGTTTGGAAGGG+GGG | + | chr5.4:12731256-12731275 | MS.gene59400:intron | 55.0% |
| GCATCAACGGCAGACTCAGC+TGG | - | chr5.4:12732298-12732317 | None:intergenic | 60.0% | |
| GTCCAATAGCACGAGCACGG+AGG | - | chr5.4:12731154-12731173 | None:intergenic | 60.0% | |
| ! | AGGGTGTTTGGAAGGGGGGA+AGG | + | chr5.4:12731260-12731279 | MS.gene59400:intron | 60.0% |
| GAGCAGGAGCCTGTGCTACC+CGG | + | chr5.4:12731122-12731141 | MS.gene59400:intron | 65.0% | |
| ! | ACGAGCACGGAGGAAGGTGC+CGG | - | chr5.4:12731144-12731163 | None:intergenic | 65.0% |
| !! | AGGAAGGTGCCGGGTAGCAC+AGG | - | chr5.4:12731134-12731153 | None:intergenic | 65.0% |
| !! | CGAGCACGGAGGAAGGTGCC+GGG | - | chr5.4:12731143-12731162 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 12729397 | 12732522 | 12729397 | ID=MS.gene59400 |
| chr5.4 | mRNA | 12729397 | 12732522 | 12729397 | ID=MS.gene59400.t1;Parent=MS.gene59400 |
| chr5.4 | exon | 12729397 | 12729523 | 12729397 | ID=MS.gene59400.t1.exon1;Parent=MS.gene59400.t1 |
| chr5.4 | CDS | 12729397 | 12729523 | 12729397 | ID=cds.MS.gene59400.t1;Parent=MS.gene59400.t1 |
| chr5.4 | exon | 12730019 | 12730047 | 12730019 | ID=MS.gene59400.t1.exon2;Parent=MS.gene59400.t1 |
| chr5.4 | CDS | 12730019 | 12730047 | 12730019 | ID=cds.MS.gene59400.t1;Parent=MS.gene59400.t1 |
| chr5.4 | exon | 12730319 | 12730384 | 12730319 | ID=MS.gene59400.t1.exon3;Parent=MS.gene59400.t1 |
| chr5.4 | CDS | 12730319 | 12730384 | 12730319 | ID=cds.MS.gene59400.t1;Parent=MS.gene59400.t1 |
| chr5.4 | exon | 12730915 | 12731022 | 12730915 | ID=MS.gene59400.t1.exon4;Parent=MS.gene59400.t1 |
| chr5.4 | CDS | 12730915 | 12731022 | 12730915 | ID=cds.MS.gene59400.t1;Parent=MS.gene59400.t1 |
| chr5.4 | exon | 12731128 | 12731193 | 12731128 | ID=MS.gene59400.t1.exon5;Parent=MS.gene59400.t1 |
| chr5.4 | CDS | 12731128 | 12731193 | 12731128 | ID=cds.MS.gene59400.t1;Parent=MS.gene59400.t1 |
| chr5.4 | exon | 12731709 | 12731829 | 12731709 | ID=MS.gene59400.t1.exon6;Parent=MS.gene59400.t1 |
| chr5.4 | CDS | 12731709 | 12731829 | 12731709 | ID=cds.MS.gene59400.t1;Parent=MS.gene59400.t1 |
| chr5.4 | exon | 12732251 | 12732332 | 12732251 | ID=MS.gene59400.t1.exon7;Parent=MS.gene59400.t1 |
| chr5.4 | CDS | 12732251 | 12732332 | 12732251 | ID=cds.MS.gene59400.t1;Parent=MS.gene59400.t1 |
| chr5.4 | exon | 12732480 | 12732522 | 12732480 | ID=MS.gene59400.t1.exon8;Parent=MS.gene59400.t1 |
| chr5.4 | CDS | 12732480 | 12732522 | 12732480 | ID=cds.MS.gene59400.t1;Parent=MS.gene59400.t1 |
| Gene Sequence |
| Protein sequence |
