Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40299.t1 | RHN70861.1 | 94.6 | 350 | 16 | 1 | 1 | 347 | 1 | 350 | 1.90E-188 | 668.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40299.t1 | Q8W593 | 67.1 | 347 | 102 | 4 | 9 | 347 | 8 | 350 | 7.7e-130 | 464.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40299.t1 | A0A396J1W6 | 94.6 | 350 | 16 | 1 | 1 | 347 | 1 | 350 | 1.4e-188 | 668.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene40299 | 0.810189 | 1.30E-50 | -1.69E-46 |
| MS.gene049217 | MS.gene40299 | 0.825227 | 5.26E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene40299 | 0.805177 | 1.51E-49 | -1.69E-46 |
| MS.gene049285 | MS.gene40299 | 0.812692 | 3.73E-51 | -1.69E-46 |
| MS.gene049351 | MS.gene40299 | 0.839376 | 1.64E-57 | -1.69E-46 |
| MS.gene049369 | MS.gene40299 | 0.801966 | 7.02E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene40299 | 0.828678 | 7.87E-55 | -1.69E-46 |
| MS.gene049491 | MS.gene40299 | 0.81029 | 1.24E-50 | -1.69E-46 |
| MS.gene049609 | MS.gene40299 | 0.837941 | 3.86E-57 | -1.69E-46 |
| MS.gene049614 | MS.gene40299 | 0.819712 | 1.01E-52 | -1.69E-46 |
| MS.gene049760 | MS.gene40299 | 0.829819 | 4.16E-55 | -1.69E-46 |
| MS.gene049805 | MS.gene40299 | 0.846356 | 2.29E-59 | -1.69E-46 |
| MS.gene050076 | MS.gene40299 | 0.828229 | 1.01E-54 | -1.69E-46 |
| MS.gene050301 | MS.gene40299 | 0.820616 | 6.24E-53 | -1.69E-46 |
| MS.gene050333 | MS.gene40299 | 0.811945 | 5.43E-51 | -1.69E-46 |
| MS.gene050397 | MS.gene40299 | 0.81981 | 9.55E-53 | -1.69E-46 |
| MS.gene050432 | MS.gene40299 | 0.855054 | 8.16E-62 | -1.69E-46 |
| MS.gene050520 | MS.gene40299 | 0.806267 | 8.94E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene40299 | 0.809341 | 1.99E-50 | -1.69E-46 |
| MS.gene050593 | MS.gene40299 | 0.847982 | 8.19E-60 | -1.69E-46 |
| MS.gene050670 | MS.gene40299 | 0.815404 | 9.41E-52 | -1.69E-46 |
| MS.gene050686 | MS.gene40299 | 0.808506 | 2.99E-50 | -1.69E-46 |
| MS.gene050747 | MS.gene40299 | 0.815112 | 1.09E-51 | -1.69E-46 |
| MS.gene050767 | MS.gene40299 | 0.862801 | 3.92E-64 | -1.69E-46 |
| MS.gene050770 | MS.gene40299 | 0.868037 | 8.79E-66 | -1.69E-46 |
| MS.gene050772 | MS.gene40299 | 0.854279 | 1.37E-61 | -1.69E-46 |
| MS.gene050950 | MS.gene40299 | 0.808301 | 3.31E-50 | -1.69E-46 |
| MS.gene05101 | MS.gene40299 | 0.838967 | 2.10E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene40299 | 0.847447 | 1.15E-59 | -1.69E-46 |
| MS.gene051228 | MS.gene40299 | 0.848049 | 7.85E-60 | -1.69E-46 |
| MS.gene051255 | MS.gene40299 | 0.833039 | 6.70E-56 | -1.69E-46 |
| MS.gene051387 | MS.gene40299 | 0.853499 | 2.30E-61 | -1.69E-46 |
| MS.gene051434 | MS.gene40299 | 0.821124 | 4.77E-53 | -1.69E-46 |
| MS.gene051666 | MS.gene40299 | 0.849597 | 2.92E-60 | -1.69E-46 |
| MS.gene051692 | MS.gene40299 | 0.816245 | 6.11E-52 | -1.69E-46 |
| MS.gene051694 | MS.gene40299 | 0.832468 | 9.29E-56 | -1.69E-46 |
| MS.gene051858 | MS.gene40299 | 0.846362 | 2.28E-59 | -1.69E-46 |
| MS.gene051877 | MS.gene40299 | 0.833756 | 4.44E-56 | -1.69E-46 |
| MS.gene052078 | MS.gene40299 | 0.848341 | 6.52E-60 | -1.69E-46 |
| MS.gene052188 | MS.gene40299 | 0.805398 | 1.36E-49 | -1.69E-46 |
| MS.gene052271 | MS.gene40299 | 0.845007 | 5.31E-59 | -1.69E-46 |
| MS.gene052290 | MS.gene40299 | 0.81042 | 1.16E-50 | -1.69E-46 |
| MS.gene052310 | MS.gene40299 | 0.846476 | 2.12E-59 | -1.69E-46 |
| MS.gene052322 | MS.gene40299 | 0.845074 | 5.10E-59 | -1.69E-46 |
| MS.gene052326 | MS.gene40299 | 0.81261 | 3.89E-51 | -1.69E-46 |
| MS.gene052340 | MS.gene40299 | 0.803598 | 3.23E-49 | -1.69E-46 |
| MS.gene052379 | MS.gene40299 | 0.860154 | 2.52E-63 | -1.69E-46 |
| MS.gene052421 | MS.gene40299 | 0.81471 | 1.34E-51 | -1.69E-46 |
| MS.gene052481 | MS.gene40299 | 0.829474 | 5.04E-55 | -1.69E-46 |
| MS.gene052484 | MS.gene40299 | 0.854615 | 1.09E-61 | -1.69E-46 |
| MS.gene052485 | MS.gene40299 | 0.818339 | 2.06E-52 | -1.69E-46 |
| MS.gene052508 | MS.gene40299 | 0.828448 | 8.94E-55 | -1.69E-46 |
| MS.gene052510 | MS.gene40299 | 0.83738 | 5.38E-57 | -1.69E-46 |
| MS.gene052615 | MS.gene40299 | 0.816038 | 6.79E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene40299 | 0.826052 | 3.35E-54 | -1.69E-46 |
| MS.gene052872 | MS.gene40299 | 0.810516 | 1.11E-50 | -1.69E-46 |
| MS.gene053009 | MS.gene40299 | 0.847595 | 1.05E-59 | -1.69E-46 |
| MS.gene053103 | MS.gene40299 | 0.875817 | 2.29E-68 | -1.69E-46 |
| MS.gene053104 | MS.gene40299 | 0.873401 | 1.51E-67 | -1.69E-46 |
| MS.gene053107 | MS.gene40299 | 0.830421 | 2.96E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene40299 | 0.85918 | 4.94E-63 | -1.69E-46 |
| MS.gene053209 | MS.gene40299 | 0.875975 | 2.02E-68 | -1.69E-46 |
| MS.gene053213 | MS.gene40299 | 0.825711 | 4.04E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene40299 | 0.814753 | 1.31E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene40299 | 0.883285 | 5.11E-71 | -1.69E-46 |
| MS.gene053384 | MS.gene40299 | 0.812007 | 5.26E-51 | -1.69E-46 |
| MS.gene053449 | MS.gene40299 | 0.825346 | 4.93E-54 | -1.69E-46 |
| MS.gene053632 | MS.gene40299 | 0.806349 | 8.59E-50 | -1.69E-46 |
| MS.gene053813 | MS.gene40299 | 0.81159 | 6.49E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene40299 | 0.804692 | 1.91E-49 | -1.69E-46 |
| MS.gene054376 | MS.gene40299 | 0.854507 | 1.18E-61 | -1.69E-46 |
| MS.gene054600 | MS.gene40299 | 0.817766 | 2.78E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene40299 | 0.831291 | 1.81E-55 | -1.69E-46 |
| MS.gene054802 | MS.gene40299 | 0.838943 | 2.13E-57 | -1.69E-46 |
| MS.gene054803 | MS.gene40299 | 0.837621 | 4.67E-57 | -1.69E-46 |
| MS.gene054804 | MS.gene40299 | 0.839341 | 1.68E-57 | -1.69E-46 |
| MS.gene054955 | MS.gene40299 | 0.804647 | 1.95E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene40299 | 0.828403 | 9.17E-55 | -1.69E-46 |
| MS.gene055206 | MS.gene40299 | 0.858867 | 6.13E-63 | -1.69E-46 |
| MS.gene055212 | MS.gene40299 | 0.810848 | 9.40E-51 | -1.69E-46 |
| MS.gene055224 | MS.gene40299 | 0.802102 | 6.58E-49 | -1.69E-46 |
| MS.gene055254 | MS.gene40299 | 0.826304 | 2.92E-54 | -1.69E-46 |
| MS.gene055277 | MS.gene40299 | 0.866778 | 2.22E-65 | -1.69E-46 |
| MS.gene055289 | MS.gene40299 | 0.817488 | 3.21E-52 | -1.69E-46 |
| MS.gene055390 | MS.gene40299 | 0.816653 | 4.95E-52 | -1.69E-46 |
| MS.gene055397 | MS.gene40299 | 0.821458 | 4.00E-53 | -1.69E-46 |
| MS.gene055412 | MS.gene40299 | 0.829955 | 3.85E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene40299 | 0.817533 | 3.14E-52 | -1.69E-46 |
| MS.gene055428 | MS.gene40299 | 0.80767 | 4.51E-50 | -1.69E-46 |
| MS.gene055499 | MS.gene40299 | 0.835698 | 1.44E-56 | -1.69E-46 |
| MS.gene055536 | MS.gene40299 | -0.811209 | 7.85E-51 | -1.69E-46 |
| MS.gene055636 | MS.gene40299 | 0.838154 | 3.40E-57 | -1.69E-46 |
| MS.gene055638 | MS.gene40299 | 0.818768 | 1.65E-52 | -1.69E-46 |
| MS.gene055647 | MS.gene40299 | 0.853152 | 2.89E-61 | -1.69E-46 |
| MS.gene055722 | MS.gene40299 | 0.861382 | 1.07E-63 | -1.69E-46 |
| MS.gene05592 | MS.gene40299 | 0.879962 | 8.12E-70 | -1.69E-46 |
| MS.gene055941 | MS.gene40299 | 0.815911 | 7.25E-52 | -1.69E-46 |
| MS.gene056083 | MS.gene40299 | 0.829944 | 3.88E-55 | -1.69E-46 |
| MS.gene056191 | MS.gene40299 | 0.808768 | 2.63E-50 | -1.69E-46 |
| MS.gene056374 | MS.gene40299 | 0.823758 | 1.17E-53 | -1.69E-46 |
| MS.gene056407 | MS.gene40299 | 0.843206 | 1.62E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene40299 | 0.88391 | 3.01E-71 | -1.69E-46 |
| MS.gene056452 | MS.gene40299 | 0.805729 | 1.16E-49 | -1.69E-46 |
| MS.gene056511 | MS.gene40299 | 0.814411 | 1.56E-51 | -1.69E-46 |
| MS.gene056609 | MS.gene40299 | 0.818452 | 1.95E-52 | -1.69E-46 |
| MS.gene056611 | MS.gene40299 | 0.800403 | 1.46E-48 | -1.69E-46 |
| MS.gene056796 | MS.gene40299 | 0.873817 | 1.10E-67 | -1.69E-46 |
| MS.gene056897 | MS.gene40299 | 0.823282 | 1.51E-53 | -1.69E-46 |
| MS.gene057011 | MS.gene40299 | 0.870404 | 1.50E-66 | -1.69E-46 |
| MS.gene057123 | MS.gene40299 | 0.826772 | 2.26E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene40299 | 0.868897 | 4.64E-66 | -1.69E-46 |
| MS.gene057146 | MS.gene40299 | 0.844463 | 7.44E-59 | -1.69E-46 |
| MS.gene057295 | MS.gene40299 | 0.811961 | 5.39E-51 | -1.69E-46 |
| MS.gene057331 | MS.gene40299 | 0.864399 | 1.25E-64 | -1.69E-46 |
| MS.gene05735 | MS.gene40299 | 0.801186 | 1.01E-48 | -1.69E-46 |
| MS.gene057416 | MS.gene40299 | 0.866718 | 2.32E-65 | -1.69E-46 |
| MS.gene057926 | MS.gene40299 | 0.803037 | 4.22E-49 | -1.69E-46 |
| MS.gene058006 | MS.gene40299 | 0.824902 | 6.27E-54 | -1.69E-46 |
| MS.gene058019 | MS.gene40299 | 0.820866 | 5.47E-53 | -1.69E-46 |
| MS.gene058082 | MS.gene40299 | 0.825715 | 4.03E-54 | -1.69E-46 |
| MS.gene05811 | MS.gene40299 | 0.828264 | 9.90E-55 | -1.69E-46 |
| MS.gene058293 | MS.gene40299 | 0.871533 | 6.36E-67 | -1.69E-46 |
| MS.gene058323 | MS.gene40299 | 0.859214 | 4.83E-63 | -1.69E-46 |
| MS.gene058419 | MS.gene40299 | 0.80521 | 1.49E-49 | -1.69E-46 |
| MS.gene058660 | MS.gene40299 | 0.855559 | 5.81E-62 | -1.69E-46 |
| MS.gene058773 | MS.gene40299 | 0.830012 | 3.73E-55 | -1.69E-46 |
| MS.gene058787 | MS.gene40299 | 0.80363 | 3.18E-49 | -1.69E-46 |
| MS.gene058840 | MS.gene40299 | -0.80714 | 5.85E-50 | -1.69E-46 |
| MS.gene058903 | MS.gene40299 | 0.801115 | 1.05E-48 | -1.69E-46 |
| MS.gene058993 | MS.gene40299 | 0.807764 | 4.31E-50 | -1.69E-46 |
| MS.gene059029 | MS.gene40299 | 0.837771 | 4.27E-57 | -1.69E-46 |
| MS.gene05907 | MS.gene40299 | 0.817827 | 2.69E-52 | -1.69E-46 |
| MS.gene059326 | MS.gene40299 | 0.859061 | 5.36E-63 | -1.69E-46 |
| MS.gene05934 | MS.gene40299 | 0.820709 | 5.94E-53 | -1.69E-46 |
| MS.gene059536 | MS.gene40299 | 0.889038 | 3.46E-73 | -1.69E-46 |
| MS.gene059597 | MS.gene40299 | 0.806474 | 8.08E-50 | -1.69E-46 |
| MS.gene05959 | MS.gene40299 | 0.815104 | 1.10E-51 | -1.69E-46 |
| MS.gene059676 | MS.gene40299 | 0.857563 | 1.50E-62 | -1.69E-46 |
| MS.gene059688 | MS.gene40299 | 0.85453 | 1.16E-61 | -1.69E-46 |
| MS.gene059692 | MS.gene40299 | 0.852922 | 3.36E-61 | -1.69E-46 |
| MS.gene059695 | MS.gene40299 | 0.851268 | 9.91E-61 | -1.69E-46 |
| MS.gene059711 | MS.gene40299 | 0.852433 | 4.63E-61 | -1.69E-46 |
| MS.gene059718 | MS.gene40299 | 0.826111 | 3.25E-54 | -1.69E-46 |
| MS.gene059894 | MS.gene40299 | 0.808477 | 3.04E-50 | -1.69E-46 |
| MS.gene059902 | MS.gene40299 | 0.850563 | 1.57E-60 | -1.69E-46 |
| MS.gene059960 | MS.gene40299 | 0.888203 | 7.27E-73 | -1.69E-46 |
| MS.gene059974 | MS.gene40299 | 0.836024 | 1.19E-56 | -1.69E-46 |
| MS.gene060193 | MS.gene40299 | 0.840227 | 9.87E-58 | -1.69E-46 |
| MS.gene060403 | MS.gene40299 | 0.832394 | 9.70E-56 | -1.69E-46 |
| MS.gene060482 | MS.gene40299 | 0.805713 | 1.17E-49 | -1.69E-46 |
| MS.gene060804 | MS.gene40299 | 0.861006 | 1.39E-63 | -1.69E-46 |
| MS.gene060818 | MS.gene40299 | 0.881563 | 2.16E-70 | -1.69E-46 |
| MS.gene060835 | MS.gene40299 | 0.800674 | 1.29E-48 | -1.69E-46 |
| MS.gene060837 | MS.gene40299 | 0.863465 | 2.44E-64 | -1.69E-46 |
| MS.gene06092 | MS.gene40299 | 0.846513 | 2.07E-59 | -1.69E-46 |
| MS.gene061041 | MS.gene40299 | 0.819685 | 1.02E-52 | -1.69E-46 |
| MS.gene061051 | MS.gene40299 | -0.817243 | 3.65E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene40299 | 0.835221 | 1.90E-56 | -1.69E-46 |
| MS.gene061154 | MS.gene40299 | 0.808626 | 2.82E-50 | -1.69E-46 |
| MS.gene061200 | MS.gene40299 | 0.888985 | 3.63E-73 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40299.t1 | MTR_3g110185 | 96.857 | 350 | 8 | 1 | 1 | 347 | 472 | 821 | 0.0 | 700 |
| MS.gene40299.t1 | MTR_8g102980 | 65.994 | 347 | 99 | 4 | 15 | 347 | 6 | 347 | 1.74e-165 | 465 |
| MS.gene40299.t1 | MTR_4g039890 | 93.644 | 236 | 10 | 1 | 101 | 336 | 7 | 237 | 7.89e-161 | 450 |
| MS.gene40299.t1 | MTR_4g039890 | 49.138 | 116 | 54 | 1 | 89 | 204 | 125 | 235 | 1.21e-27 | 108 |
| MS.gene40299.t1 | MTR_4g039890 | 44.860 | 107 | 59 | 0 | 232 | 338 | 8 | 114 | 2.22e-23 | 97.4 |
| MS.gene40299.t1 | MTR_8g102980 | 65.373 | 335 | 97 | 5 | 15 | 335 | 6 | 335 | 3.76e-156 | 441 |
| MS.gene40299.t1 | MTR_8g102980 | 41.489 | 188 | 100 | 3 | 155 | 338 | 27 | 208 | 1.01e-35 | 133 |
| MS.gene40299.t1 | MTR_6g087120 | 63.473 | 334 | 111 | 3 | 23 | 347 | 17 | 348 | 1.64e-152 | 432 |
| MS.gene40299.t1 | MTR_2g023500 | 66.784 | 283 | 90 | 1 | 69 | 347 | 5 | 287 | 2.80e-139 | 397 |
| MS.gene40299.t1 | MTR_4g132270 | 62.319 | 276 | 100 | 1 | 76 | 347 | 6 | 281 | 5.69e-130 | 373 |
| MS.gene40299.t1 | MTR_4g132270 | 62.319 | 276 | 100 | 1 | 76 | 347 | 29 | 304 | 2.49e-129 | 372 |
| MS.gene40299.t1 | MTR_4g132260 | 60.870 | 276 | 104 | 1 | 76 | 347 | 6 | 281 | 1.62e-126 | 364 |
| MS.gene40299.t1 | MTR_0430s0010 | 71.765 | 85 | 24 | 0 | 165 | 249 | 1 | 85 | 4.90e-32 | 115 |
| MS.gene40299.t1 | MTR_4g057685 | 30.263 | 152 | 71 | 6 | 88 | 210 | 79 | 224 | 2.59e-13 | 68.9 |
| MS.gene40299.t1 | MTR_4g057685 | 28.000 | 150 | 77 | 5 | 216 | 338 | 77 | 222 | 3.11e-13 | 68.9 |
| MS.gene40299.t1 | MTR_4g057685 | 30.263 | 152 | 71 | 6 | 88 | 210 | 31 | 176 | 2.86e-13 | 67.8 |
| MS.gene40299.t1 | MTR_4g057685 | 28.000 | 150 | 77 | 5 | 216 | 338 | 29 | 174 | 4.19e-13 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40299.t1 | AT1G67280 | 67.147 | 347 | 102 | 4 | 9 | 347 | 8 | 350 | 1.75e-167 | 471 |
| MS.gene40299.t1 | AT1G67280 | 78.927 | 261 | 55 | 0 | 87 | 347 | 2 | 262 | 1.39e-153 | 432 |
| MS.gene40299.t1 | AT1G11840 | 68.772 | 285 | 84 | 2 | 67 | 347 | 39 | 322 | 2.77e-140 | 400 |
| MS.gene40299.t1 | AT1G11840 | 69.784 | 278 | 80 | 1 | 74 | 347 | 6 | 283 | 5.62e-140 | 398 |
| MS.gene40299.t1 | AT1G11840 | 69.784 | 278 | 80 | 1 | 74 | 347 | 6 | 283 | 5.62e-140 | 398 |
| MS.gene40299.t1 | AT1G11840 | 69.784 | 278 | 80 | 1 | 74 | 347 | 6 | 283 | 5.62e-140 | 398 |
| MS.gene40299.t1 | AT1G11840 | 69.784 | 278 | 80 | 1 | 74 | 347 | 6 | 283 | 5.62e-140 | 398 |
| MS.gene40299.t1 | AT1G11840 | 68.664 | 217 | 68 | 0 | 74 | 290 | 6 | 222 | 4.63e-108 | 315 |
| MS.gene40299.t1 | AT1G11840 | 49.194 | 124 | 63 | 0 | 216 | 339 | 18 | 141 | 1.43e-34 | 127 |
| MS.gene40299.t1 | AT1G08110 | 28.767 | 146 | 77 | 4 | 88 | 208 | 30 | 173 | 5.08e-12 | 64.3 |
| MS.gene40299.t1 | AT1G08110 | 28.767 | 146 | 77 | 4 | 88 | 208 | 30 | 173 | 5.08e-12 | 64.3 |
| MS.gene40299.t1 | AT1G08110 | 28.767 | 146 | 77 | 4 | 88 | 208 | 30 | 173 | 5.08e-12 | 64.3 |
| MS.gene40299.t1 | AT1G08110 | 28.767 | 146 | 77 | 4 | 88 | 208 | 80 | 223 | 8.28e-12 | 64.7 |
Find 82 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATCTTCTATTATCATTT+TGG | 0.140017 | 3.2:+87963934 | None:intergenic |
| TGGTTATAGGTTTGAGCTTT+TGG | 0.209102 | 3.2:-87962994 | MS.gene40299:CDS |
| TATGACATTGGAACTGGTTT+TGG | 0.261238 | 3.2:-87963353 | MS.gene40299:CDS |
| AGACCCTGATGGTTGGAAAT+TGG | 0.277475 | 3.2:-87962247 | MS.gene40299:intron |
| CAGACCAAAACTTGGTTAAC+TGG | 0.278238 | 3.2:-87963959 | MS.gene40299:CDS |
| TTGAAGATCCTAGTGGTTAT+AGG | 0.311803 | 3.2:-87963007 | MS.gene40299:CDS |
| TGTATACAAGGTTGGAGATT+TGG | 0.312497 | 3.2:-87963904 | MS.gene40299:CDS |
| AGTAAGTTCAACTGTAAAAC+TGG | 0.328366 | 3.2:+87963522 | None:intergenic |
| GCATTTGAATATTTGTCTTC+CGG | 0.337717 | 3.2:+87963571 | None:intergenic |
| GGACCCAGTTAACCAAGTTT+TGG | 0.356947 | 3.2:+87963955 | None:intergenic |
| CTCTTTCATCTTCTCACCAC+TGG | 0.372795 | 3.2:-87964200 | MS.gene40299:CDS |
| CGAAGCATCACTTTGCATAA+GGG | 0.378451 | 3.2:+87962951 | None:intergenic |
| GTGTTTGAACAGATTGCTAT+AGG | 0.380967 | 3.2:-87962378 | MS.gene40299:intron |
| CTTCTCACCACTGGTGGTAT+TGG | 0.382640 | 3.2:-87964191 | MS.gene40299:intron |
| TCGAAGCATCACTTTGCATA+AGG | 0.390181 | 3.2:+87962950 | None:intergenic |
| TGTAGCAGATGGTAACATTA+AGG | 0.398859 | 3.2:+87964283 | None:intergenic |
| TCCCAATTACTTGGTGGAAA+AGG | 0.414364 | 3.2:-87964035 | MS.gene40299:CDS |
| GATAACTATGACATTGGAAC+TGG | 0.436005 | 3.2:-87963359 | MS.gene40299:CDS |
| ACTGTAAAACTGGAATCTTC+AGG | 0.439492 | 3.2:+87963532 | None:intergenic |
| CGTGAACCTGGACCCTTACC+TGG | 0.440286 | 3.2:-87962297 | MS.gene40299:CDS |
| CATACCAATTTCCAACCATC+AGG | 0.443644 | 3.2:+87962243 | None:intergenic |
| GATAGACAACCCTGAGGAAA+AGG | 0.451770 | 3.2:-87962755 | MS.gene40299:intron |
| ACTAACTATGACAAAGGAAA+TGG | 0.452864 | 3.2:-87962523 | MS.gene40299:CDS |
| CAGTACACAGTAGCCAAGTT+GGG | 0.453964 | 3.2:-87962601 | MS.gene40299:CDS |
| AGAACAGGACCATTAGCTTC+AGG | 0.460964 | 3.2:+87962571 | None:intergenic |
| GTCTAAGCAAACAACAATCT+TGG | 0.466953 | 3.2:+87962266 | None:intergenic |
| ACAGTAGCCAAGTTGGGATA+TGG | 0.468535 | 3.2:-87962595 | MS.gene40299:CDS |
| GGAGTGGATAACTATGACAT+TGG | 0.474181 | 3.2:-87963365 | MS.gene40299:CDS |
| CTACCACAATCCCAATTACT+TGG | 0.476452 | 3.2:-87964044 | MS.gene40299:CDS |
| CTTTACAATATCTACTGTCT+TGG | 0.481456 | 3.2:+87963097 | None:intergenic |
| GCGAAGATTATCCGTGAACC+TGG | 0.488185 | 3.2:-87962309 | MS.gene40299:CDS |
| GTTAAGAAAACGTGATATAC+CGG | 0.490695 | 3.2:-87963590 | MS.gene40299:CDS |
| TAGATATTGTAAAGGCGAAA+GGG | 0.492189 | 3.2:-87963088 | MS.gene40299:CDS |
| TCAGTACACAGTAGCCAAGT+TGG | 0.494157 | 3.2:-87962602 | MS.gene40299:intron |
| ATTTCTACATGTTGTATACA+AGG | 0.495236 | 3.2:-87963916 | MS.gene40299:CDS |
| CTTGGTGTTGATACCAGGTA+AGG | 0.496690 | 3.2:+87962284 | None:intergenic |
| TGCCCAACCAGACCAAAACT+TGG | 0.500203 | 3.2:-87963967 | MS.gene40299:CDS |
| CAGGTAAGGGTCCAGGTTCA+CGG | 0.500509 | 3.2:+87962298 | None:intergenic |
| CTACATGTTGTATACAAGGT+TGG | 0.505014 | 3.2:-87963912 | MS.gene40299:CDS |
| GGATATGGTCCTGAAGCTAA+TGG | 0.505691 | 3.2:-87962580 | MS.gene40299:CDS |
| TTGTTAATTTCAAAGGCTGT+TGG | 0.505802 | 3.2:-87962796 | MS.gene40299:intron |
| CCTCAGGGTTGTCTATCTTG+TGG | 0.510152 | 3.2:+87962761 | None:intergenic |
| CCACCAAGTAATTGGGATTG+TGG | 0.511397 | 3.2:+87964041 | None:intergenic |
| TTCTTAACAGCTTCATGCCA+AGG | 0.512814 | 3.2:+87963605 | None:intergenic |
| TTGCATAAGGGTTCGCGAGT+AGG | 0.520825 | 3.2:+87962963 | None:intergenic |
| TTATACGTCAGTTCTAGAAC+AGG | 0.522234 | 3.2:+87962556 | None:intergenic |
| TTGATACCAGGTAAGGGTCC+AGG | 0.528793 | 3.2:+87962291 | None:intergenic |
| TTTCATCTTCTCACCACTGG+TGG | 0.535528 | 3.2:-87964197 | MS.gene40299:CDS |
| CAAGACAGTAGATATTGTAA+AGG | 0.536229 | 3.2:-87963096 | MS.gene40299:CDS |
| CCACAATCCCAATTACTTGG+TGG | 0.538717 | 3.2:-87964041 | MS.gene40299:CDS |
| AGATTCTACACTGAATGCCT+TGG | 0.547114 | 3.2:-87963622 | MS.gene40299:CDS |
| GGTCTTAATGTTGTAGCAGA+TGG | 0.550784 | 3.2:+87964272 | None:intergenic |
| ACAATCTTGGTGTTGATACC+AGG | 0.558211 | 3.2:+87962279 | None:intergenic |
| TTCAGGACCATATCCCAACT+TGG | 0.559056 | 3.2:+87962588 | None:intergenic |
| GTAGATATTGTAAAGGCGAA+AGG | 0.560029 | 3.2:-87963089 | MS.gene40299:CDS |
| GGAAAGGTTACAAGAGAACC+AGG | 0.573831 | 3.2:-87963065 | MS.gene40299:CDS |
| TTTGCTTAGACCCTGATGGT+TGG | 0.584141 | 3.2:-87962254 | MS.gene40299:CDS |
| AGAAGGCTATGACACGATCA+AGG | 0.584516 | 3.2:+87962919 | None:intergenic |
| CAAAGGAAATGGCTATGCAC+AGG | 0.585145 | 3.2:-87962512 | MS.gene40299:intron |
| AGAGAACCAGGGTCTGTCAA+AGG | 0.592272 | 3.2:-87963053 | MS.gene40299:CDS |
| GTTGTTTGCTTAGACCCTGA+TGG | 0.593224 | 3.2:-87962258 | MS.gene40299:CDS |
| AGACCAAAACTTGGTTAACT+GGG | 0.599796 | 3.2:-87963958 | MS.gene40299:CDS |
| GAGCTACCTTTGACAGACCC+TGG | 0.602880 | 3.2:+87963047 | None:intergenic |
| GGCGTCACTAACTATGACAA+AGG | 0.608980 | 3.2:-87962529 | MS.gene40299:CDS |
| AGATATTGTAAAGGCGAAAG+GGG | 0.617229 | 3.2:-87963087 | MS.gene40299:CDS |
| TGAACAGATTGCTATAGGCA+CGG | 0.617304 | 3.2:-87962373 | MS.gene40299:intron |
| AGAATTGTTCAAATTAGCAG+AGG | 0.618343 | 3.2:-87964009 | MS.gene40299:CDS |
| GCAGAAGCAATCAAATCATG+TGG | 0.633710 | 3.2:-87962333 | MS.gene40299:CDS |
| CTAGAACTGACGTATAACTA+CGG | 0.638025 | 3.2:-87962550 | MS.gene40299:CDS |
| TTGGTGTTGATACCAGGTAA+GGG | 0.642110 | 3.2:+87962285 | None:intergenic |
| GATATTGTAAAGGCGAAAGG+GGG | 0.643425 | 3.2:-87963086 | MS.gene40299:CDS |
| AGCTCAAACCTATAACCACT+AGG | 0.647923 | 3.2:+87962999 | None:intergenic |
| ATACCAATTTCCAACCATCA+GGG | 0.661992 | 3.2:+87962244 | None:intergenic |
| TGCAAAGTGATGCTTCGAGT+AGG | 0.675317 | 3.2:-87962945 | MS.gene40299:CDS |
| ATAACCACTAGGATCTTCAA+CGG | 0.678581 | 3.2:+87963010 | None:intergenic |
| GAGATTACCAATACCACCAG+TGG | 0.692240 | 3.2:+87964184 | None:intergenic |
| ATTCTTCGTGAAGATGACGA+TGG | 0.699995 | 3.2:+87964227 | None:intergenic |
| GCTTCCGTTGAAGATCCTAG+TGG | 0.716192 | 3.2:-87963014 | MS.gene40299:CDS |
| GGTGATTGCAGATTATGGAG+TGG | 0.722660 | 3.2:-87963381 | MS.gene40299:intron |
| GTGATGCTACAACTACAACA+AGG | 0.730518 | 3.2:+87964251 | None:intergenic |
| GAAAGGTTACAAGAGAACCA+GGG | 0.783522 | 3.2:-87963064 | MS.gene40299:CDS |
| CCACAAGATAGACAACCCTG+AGG | 0.800561 | 3.2:-87962761 | MS.gene40299:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTTATGATTTTTACA+TGG | - | chr3.2:87963929-87963948 | MS.gene40299:CDS | 15.0% |
| !! | AACATATTACATCAAATACA+AGG | + | chr3.2:87964171-87964190 | None:intergenic | 20.0% |
| !! | AGTTAATGTAATTGTTATGA+TGG | - | chr3.2:87963502-87963521 | MS.gene40299:intron | 20.0% |
| !! | ATTCAATGTTCATCATAATA+AGG | + | chr3.2:87963171-87963190 | None:intergenic | 20.0% |
| !! | TAAGCTATTTATACTAATAG+AGG | + | chr3.2:87962552-87962571 | None:intergenic | 20.0% |
| !! | TTCAATGTTCATCATAATAA+GGG | + | chr3.2:87963170-87963189 | None:intergenic | 20.0% |
| !!! | AAATATTCAAATGCTTTTCT+TGG | - | chr3.2:87962816-87962835 | MS.gene40299:intron | 20.0% |
| !!! | GAAATCTTCTATTATCATTT+TGG | + | chr3.2:87962447-87962466 | None:intergenic | 20.0% |
| !!! | TAATGCTACTTTTTTTTTTC+CGG | - | chr3.2:87962897-87962916 | MS.gene40299:intron | 20.0% |
| ! | ACTTATTTATTACTTCTTGC+AGG | - | chr3.2:87964252-87964271 | MS.gene40299:CDS | 25.0% |
| ! | ATATTGTTATGACTTTGACT+TGG | - | chr3.2:87962272-87962291 | MS.gene40299:CDS | 25.0% |
| ! | ATTTCTACATGTTGTATACA+AGG | - | chr3.2:87962462-87962481 | MS.gene40299:intron | 25.0% |
| ! | TATGATGAACATTGAATGAA+AGG | - | chr3.2:87963174-87963193 | MS.gene40299:intron | 25.0% |
| !! | ATGCATAATAATGATTTTGC+CGG | + | chr3.2:87962919-87962938 | None:intergenic | 25.0% |
| !! | ATGTTCTACTTCTTCAATTT+TGG | - | chr3.2:87962512-87962531 | MS.gene40299:intron | 25.0% |
| !! | CTTTTTCTATTTTCAGAAGA+GGG | - | chr3.2:87963900-87963919 | MS.gene40299:CDS | 25.0% |
| !! | TCTTTTTCTATTTTCAGAAG+AGG | - | chr3.2:87963899-87963918 | MS.gene40299:CDS | 25.0% |
| !!! | TGATAATGTTGATTTTCTGA+AGG | - | chr3.2:87964282-87964301 | MS.gene40299:CDS | 25.0% |
| ACTAACTATGACAAAGGAAA+TGG | - | chr3.2:87963855-87963874 | MS.gene40299:intron | 30.0% | |
| AGAATTGTTCAAATTAGCAG+AGG | - | chr3.2:87962369-87962388 | MS.gene40299:CDS | 30.0% | |
| AGTAAGTTCAACTGTAAAAC+TGG | + | chr3.2:87962859-87962878 | None:intergenic | 30.0% | |
| CAAGACAGTAGATATTGTAA+AGG | - | chr3.2:87963282-87963301 | MS.gene40299:intron | 30.0% | |
| CTTGTCGTTGTTAATTTCAA+AGG | - | chr3.2:87963575-87963594 | MS.gene40299:CDS | 30.0% | |
| CTTTACAATATCTACTGTCT+TGG | + | chr3.2:87963284-87963303 | None:intergenic | 30.0% | |
| GCATTTGAATATTTGTCTTC+CGG | + | chr3.2:87962810-87962829 | None:intergenic | 30.0% | |
| GTTAAGAAAACGTGATATAC+CGG | - | chr3.2:87962788-87962807 | MS.gene40299:intron | 30.0% | |
| TAAACACTTGTGAGTTTGAT+TGG | + | chr3.2:87962685-87962704 | None:intergenic | 30.0% | |
| TAGATATTGTAAAGGCGAAA+GGG | - | chr3.2:87963290-87963309 | MS.gene40299:intron | 30.0% | |
| TCAATCAAAATAGTAATCCC+AGG | + | chr3.2:87963695-87963714 | None:intergenic | 30.0% | |
| TTGTTAATTTCAAAGGCTGT+TGG | - | chr3.2:87963582-87963601 | MS.gene40299:CDS | 30.0% | |
| ! | TCAAATGCTTTTCTTGGATA+CGG | - | chr3.2:87962822-87962841 | MS.gene40299:intron | 30.0% |
| !! | AAATGAAAGCTTTGAGAATG+AGG | + | chr3.2:87962236-87962255 | None:intergenic | 30.0% |
| !!! | TACACTCACTTTTTCATAGA+AGG | + | chr3.2:87963479-87963498 | None:intergenic | 30.0% |
| AAATAGTAATCCCAGGAACA+CGG | + | chr3.2:87963688-87963707 | None:intergenic | 35.0% | |
| ACTGTAAAACTGGAATCTTC+AGG | + | chr3.2:87962849-87962868 | None:intergenic | 35.0% | |
| AGACCAAAACTTGGTTAACT+GGG | - | chr3.2:87962420-87962439 | MS.gene40299:intron | 35.0% | |
| AGATATTGTAAAGGCGAAAG+GGG | - | chr3.2:87963291-87963310 | MS.gene40299:intron | 35.0% | |
| AGTTTGATTGGAAGAGCTTA+TGG | + | chr3.2:87962673-87962692 | None:intergenic | 35.0% | |
| ATAACCACTAGGATCTTCAA+CGG | + | chr3.2:87963371-87963390 | None:intergenic | 35.0% | |
| ATACCAATTTCCAACCATCA+GGG | + | chr3.2:87964137-87964156 | None:intergenic | 35.0% | |
| CATGCATTATACATTCATGG+AGG | + | chr3.2:87963956-87963975 | None:intergenic | 35.0% | |
| CGAAATAGCAACTATGATGA+GGG | + | chr3.2:87962976-87962995 | None:intergenic | 35.0% | |
| CGACATGCATTATACATTCA+TGG | + | chr3.2:87963959-87963978 | None:intergenic | 35.0% | |
| CTACATGTTGTATACAAGGT+TGG | - | chr3.2:87962466-87962485 | MS.gene40299:intron | 35.0% | |
| CTAGAACTGACGTATAACTA+CGG | - | chr3.2:87963828-87963847 | MS.gene40299:intron | 35.0% | |
| CTCACAAGTGTTTATGTAAG+TGG | - | chr3.2:87962691-87962710 | MS.gene40299:intron | 35.0% | |
| GAAAAGGTAACAACTACTTG+TGG | - | chr3.2:87963639-87963658 | MS.gene40299:intron | 35.0% | |
| GATAACTATGACATTGGAAC+TGG | - | chr3.2:87963019-87963038 | MS.gene40299:CDS | 35.0% | |
| GTAGATATTGTAAAGGCGAA+AGG | - | chr3.2:87963289-87963308 | MS.gene40299:intron | 35.0% | |
| GTCTAAGCAAACAACAATCT+TGG | + | chr3.2:87964115-87964134 | None:intergenic | 35.0% | |
| GTGGTTATTAATCAGATGCA+TGG | - | chr3.2:87963658-87963677 | MS.gene40299:intron | 35.0% | |
| GTGTTTGAACAGATTGCTAT+AGG | - | chr3.2:87964000-87964019 | MS.gene40299:CDS | 35.0% | |
| TGTAGCAGATGGTAACATTA+AGG | + | chr3.2:87962098-87962117 | None:intergenic | 35.0% | |
| TGTATACAAGGTTGGAGATT+TGG | - | chr3.2:87962474-87962493 | MS.gene40299:intron | 35.0% | |
| TTGAAGATCCTAGTGGTTAT+AGG | - | chr3.2:87963371-87963390 | MS.gene40299:CDS | 35.0% | |
| ! | ATCCTTTTCCACCAAGTAAT+TGG | + | chr3.2:87962348-87962367 | None:intergenic | 35.0% |
| ! | CAAATGCTTTTCTTGGATAC+GGG | - | chr3.2:87962823-87962842 | MS.gene40299:intron | 35.0% |
| ! | TAGTTGTTACCTTTTCCTCA+GGG | + | chr3.2:87963635-87963654 | None:intergenic | 35.0% |
| ! | TCCTTTTCCACCAAGTAATT+GGG | + | chr3.2:87962347-87962366 | None:intergenic | 35.0% |
| ! | TGGTTATAGGTTTGAGCTTT+TGG | - | chr3.2:87963384-87963403 | MS.gene40299:intron | 35.0% |
| !! | TATGACATTGGAACTGGTTT+TGG | - | chr3.2:87963025-87963044 | MS.gene40299:CDS | 35.0% |
| !! | TCATCATAGTTGCTATTTCG+CGG | - | chr3.2:87962976-87962995 | MS.gene40299:CDS | 35.0% |
| !! | TTATACGTCAGTTCTAGAAC+AGG | + | chr3.2:87963825-87963844 | None:intergenic | 35.0% |
| !!! | TGTTGATTTTCTGAAGGAAC+TGG | - | chr3.2:87964288-87964307 | MS.gene40299:CDS | 35.0% |
| AAACAATGAGCGACATACAG+AGG | + | chr3.2:87964219-87964238 | None:intergenic | 40.0% | |
| AGATTCTACACTGAATGCCT+TGG | - | chr3.2:87962756-87962775 | MS.gene40299:CDS | 40.0% | |
| AGCTCAAACCTATAACCACT+AGG | + | chr3.2:87963382-87963401 | None:intergenic | 40.0% | |
| ATTCTTCGTGAAGATGACGA+TGG | + | chr3.2:87962154-87962173 | None:intergenic | 40.0% | |
| CAGACCAAAACTTGGTTAAC+TGG | - | chr3.2:87962419-87962438 | MS.gene40299:intron | 40.0% | |
| CATACAGAGGTTAACACAGT+AGG | + | chr3.2:87964206-87964225 | None:intergenic | 40.0% | |
| CATACCAATTTCCAACCATC+AGG | + | chr3.2:87964138-87964157 | None:intergenic | 40.0% | |
| CTACCACAATCCCAATTACT+TGG | - | chr3.2:87962334-87962353 | MS.gene40299:CDS | 40.0% | |
| CTGATGGTTGGAAATTGGTA+TGG | - | chr3.2:87964136-87964155 | MS.gene40299:intron | 40.0% | |
| GAAAGGTTACAAGAGAACCA+GGG | - | chr3.2:87963314-87963333 | MS.gene40299:intron | 40.0% | |
| GATATTGTAAAGGCGAAAGG+GGG | - | chr3.2:87963292-87963311 | MS.gene40299:intron | 40.0% | |
| GCAGAAGCAATCAAATCATG+TGG | - | chr3.2:87964045-87964064 | MS.gene40299:CDS | 40.0% | |
| GCGAAATAGCAACTATGATG+AGG | + | chr3.2:87962977-87962996 | None:intergenic | 40.0% | |
| GGAGTGGATAACTATGACAT+TGG | - | chr3.2:87963013-87963032 | MS.gene40299:CDS | 40.0% | |
| GGTCTTAATGTTGTAGCAGA+TGG | + | chr3.2:87962109-87962128 | None:intergenic | 40.0% | |
| GTGATGCTACAACTACAACA+AGG | + | chr3.2:87962130-87962149 | None:intergenic | 40.0% | |
| TAGATGCAAACACATGCAAG+AGG | - | chr3.2:87963540-87963559 | MS.gene40299:CDS | 40.0% | |
| TGAACAGATTGCTATAGGCA+CGG | - | chr3.2:87964005-87964024 | MS.gene40299:CDS | 40.0% | |
| TTCTTAACAGCTTCATGCCA+AGG | + | chr3.2:87962776-87962795 | None:intergenic | 40.0% | |
| ! | CGAAGCATCACTTTGCATAA+GGG | + | chr3.2:87963430-87963449 | None:intergenic | 40.0% |
| ! | GAGGGAGAATTTTGTGTAAG+TGG | + | chr3.2:87962958-87962977 | None:intergenic | 40.0% |
| ! | GTAGTTGTTACCTTTTCCTC+AGG | + | chr3.2:87963636-87963655 | None:intergenic | 40.0% |
| ! | GTTTTATACTGCGCTTTTGC+AGG | - | chr3.2:87963255-87963274 | MS.gene40299:intron | 40.0% |
| ! | TCCCAATTACTTGGTGGAAA+AGG | - | chr3.2:87962343-87962362 | MS.gene40299:CDS | 40.0% |
| ! | TCGAAGCATCACTTTGCATA+AGG | + | chr3.2:87963431-87963450 | None:intergenic | 40.0% |
| !! | AACCAAGTTTTGGTCTGGTT+GGG | + | chr3.2:87962416-87962435 | None:intergenic | 40.0% |
| !! | ACAATCTTGGTGTTGATACC+AGG | + | chr3.2:87964102-87964121 | None:intergenic | 40.0% |
| !! | CAGTTAACCAAGTTTTGGTC+TGG | + | chr3.2:87962421-87962440 | None:intergenic | 40.0% |
| !! | TAACCAAGTTTTGGTCTGGT+TGG | + | chr3.2:87962417-87962436 | None:intergenic | 40.0% |
| !! | TGAAAGCTTTGAGAATGAGG+TGG | + | chr3.2:87962233-87962252 | None:intergenic | 40.0% |
| !! | TTGGTGTTGATACCAGGTAA+GGG | + | chr3.2:87964096-87964115 | None:intergenic | 40.0% |
| !!! | GGAACTGGTTTTGGTCATTT+TGG | - | chr3.2:87963034-87963053 | MS.gene40299:CDS | 40.0% |
| AGAAGGCTATGACACGATCA+AGG | + | chr3.2:87963462-87963481 | None:intergenic | 45.0% | |
| AGACCCTGATGGTTGGAAAT+TGG | - | chr3.2:87964131-87964150 | MS.gene40299:intron | 45.0% | |
| CAAAGGAAATGGCTATGCAC+AGG | - | chr3.2:87963866-87963885 | MS.gene40299:intron | 45.0% | |
| CAGTACACAGTAGCCAAGTT+GGG | - | chr3.2:87963777-87963796 | MS.gene40299:intron | 45.0% | |
| CCACAATCCCAATTACTTGG+TGG | - | chr3.2:87962337-87962356 | MS.gene40299:CDS | 45.0% | |
| CCACCAAGTAATTGGGATTG+TGG | + | chr3.2:87962340-87962359 | None:intergenic | 45.0% | |
| CTCTTTCATCTTCTCACCAC+TGG | - | chr3.2:87962178-87962197 | MS.gene40299:intron | 45.0% | |
| GAGATTACCAATACCACCAG+TGG | + | chr3.2:87962197-87962216 | None:intergenic | 45.0% | |
| GATAGACAACCCTGAGGAAA+AGG | - | chr3.2:87963623-87963642 | MS.gene40299:CDS | 45.0% | |
| GGAAAGGTTACAAGAGAACC+AGG | - | chr3.2:87963313-87963332 | MS.gene40299:intron | 45.0% | |
| GGATATGGTCCTGAAGCTAA+TGG | - | chr3.2:87963798-87963817 | MS.gene40299:intron | 45.0% | |
| GGCGTCACTAACTATGACAA+AGG | - | chr3.2:87963849-87963868 | MS.gene40299:intron | 45.0% | |
| GGTGATTGCAGATTATGGAG+TGG | - | chr3.2:87962997-87963016 | MS.gene40299:CDS | 45.0% | |
| GTTGTTTGCTTAGACCCTGA+TGG | - | chr3.2:87964120-87964139 | MS.gene40299:intron | 45.0% | |
| TCAGTACACAGTAGCCAAGT+TGG | - | chr3.2:87963776-87963795 | MS.gene40299:intron | 45.0% | |
| TGCAAAGTGATGCTTCGAGT+AGG | - | chr3.2:87963433-87963452 | MS.gene40299:intron | 45.0% | |
| TTCAGGACCATATCCCAACT+TGG | + | chr3.2:87963793-87963812 | None:intergenic | 45.0% | |
| TTCGCGGTGATTGCAGATTA+TGG | - | chr3.2:87962992-87963011 | MS.gene40299:CDS | 45.0% | |
| TTTCATCTTCTCACCACTGG+TGG | - | chr3.2:87962181-87962200 | MS.gene40299:intron | 45.0% | |
| TTTGCTTAGACCCTGATGGT+TGG | - | chr3.2:87964124-87964143 | MS.gene40299:intron | 45.0% | |
| ! | ACAGTAGCCAAGTTGGGATA+TGG | - | chr3.2:87963783-87963802 | MS.gene40299:intron | 45.0% |
| ! | AGAACAGGACCATTAGCTTC+AGG | + | chr3.2:87963810-87963829 | None:intergenic | 45.0% |
| ! | GGACCCAGTTAACCAAGTTT+TGG | + | chr3.2:87962426-87962445 | None:intergenic | 45.0% |
| !! | CTTGGTGTTGATACCAGGTA+AGG | + | chr3.2:87964097-87964116 | None:intergenic | 45.0% |
| AGAGAACCAGGGTCTGTCAA+AGG | - | chr3.2:87963325-87963344 | MS.gene40299:intron | 50.0% | |
| CCACAAGATAGACAACCCTG+AGG | - | chr3.2:87963617-87963636 | MS.gene40299:CDS | 50.0% | |
| CCTCAGGGTTGTCTATCTTG+TGG | + | chr3.2:87963620-87963639 | None:intergenic | 50.0% | |
| CTTCTCACCACTGGTGGTAT+TGG | - | chr3.2:87962187-87962206 | MS.gene40299:intron | 50.0% | |
| GCGAAGATTATCCGTGAACC+TGG | - | chr3.2:87964069-87964088 | MS.gene40299:intron | 50.0% | |
| GCTTCCGTTGAAGATCCTAG+TGG | - | chr3.2:87963364-87963383 | MS.gene40299:CDS | 50.0% | |
| TCTTCTGCTGCTGCTGCATT+TGG | - | chr3.2:87962302-87962321 | MS.gene40299:CDS | 50.0% | |
| TGCCCAACCAGACCAAAACT+TGG | - | chr3.2:87962411-87962430 | MS.gene40299:intron | 50.0% | |
| TGTAAAGGCGAAAGGGGGAA+AGG | - | chr3.2:87963297-87963316 | MS.gene40299:intron | 50.0% | |
| TTGATACCAGGTAAGGGTCC+AGG | + | chr3.2:87964090-87964109 | None:intergenic | 50.0% | |
| TTGCATAAGGGTTCGCGAGT+AGG | + | chr3.2:87963418-87963437 | None:intergenic | 50.0% | |
| CAGGTAAGGGTCCAGGTTCA+CGG | + | chr3.2:87964083-87964102 | None:intergenic | 55.0% | |
| GAGCTACCTTTGACAGACCC+TGG | + | chr3.2:87963334-87963353 | None:intergenic | 55.0% | |
| GCATGGCTATCCGTGTTCCT+GGG | - | chr3.2:87963675-87963694 | MS.gene40299:intron | 55.0% | |
| TGCATGGCTATCCGTGTTCC+TGG | - | chr3.2:87963674-87963693 | MS.gene40299:intron | 55.0% | |
| CGTGAACCTGGACCCTTACC+TGG | - | chr3.2:87964081-87964100 | MS.gene40299:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 87962085 | 87964315 | 87962085 | ID=MS.gene40299 |
| chr3.2 | mRNA | 87962085 | 87964315 | 87962085 | ID=MS.gene40299.t1;Parent=MS.gene40299 |
| chr3.2 | exon | 87964192 | 87964315 | 87964192 | ID=MS.gene40299.t1.exon1;Parent=MS.gene40299.t1 |
| chr3.2 | CDS | 87964192 | 87964315 | 87964192 | ID=cds.MS.gene40299.t1;Parent=MS.gene40299.t1 |
| chr3.2 | exon | 87963891 | 87964068 | 87963891 | ID=MS.gene40299.t1.exon2;Parent=MS.gene40299.t1 |
| chr3.2 | CDS | 87963891 | 87964068 | 87963891 | ID=cds.MS.gene40299.t1;Parent=MS.gene40299.t1 |
| chr3.2 | exon | 87963518 | 87963642 | 87963518 | ID=MS.gene40299.t1.exon3;Parent=MS.gene40299.t1 |
| chr3.2 | CDS | 87963518 | 87963642 | 87963518 | ID=cds.MS.gene40299.t1;Parent=MS.gene40299.t1 |
| chr3.2 | exon | 87963328 | 87963392 | 87963328 | ID=MS.gene40299.t1.exon4;Parent=MS.gene40299.t1 |
| chr3.2 | CDS | 87963328 | 87963392 | 87963328 | ID=cds.MS.gene40299.t1;Parent=MS.gene40299.t1 |
| chr3.2 | exon | 87962911 | 87963123 | 87962911 | ID=MS.gene40299.t1.exon5;Parent=MS.gene40299.t1 |
| chr3.2 | CDS | 87962911 | 87963123 | 87962911 | ID=cds.MS.gene40299.t1;Parent=MS.gene40299.t1 |
| chr3.2 | exon | 87962756 | 87962803 | 87962756 | ID=MS.gene40299.t1.exon6;Parent=MS.gene40299.t1 |
| chr3.2 | CDS | 87962756 | 87962803 | 87962756 | ID=cds.MS.gene40299.t1;Parent=MS.gene40299.t1 |
| chr3.2 | exon | 87962513 | 87962620 | 87962513 | ID=MS.gene40299.t1.exon7;Parent=MS.gene40299.t1 |
| chr3.2 | CDS | 87962513 | 87962620 | 87962513 | ID=cds.MS.gene40299.t1;Parent=MS.gene40299.t1 |
| chr3.2 | exon | 87962248 | 87962388 | 87962248 | ID=MS.gene40299.t1.exon8;Parent=MS.gene40299.t1 |
| chr3.2 | CDS | 87962248 | 87962388 | 87962248 | ID=cds.MS.gene40299.t1;Parent=MS.gene40299.t1 |
| chr3.2 | exon | 87962085 | 87962126 | 87962085 | ID=MS.gene40299.t1.exon9;Parent=MS.gene40299.t1 |
| chr3.2 | CDS | 87962085 | 87962126 | 87962085 | ID=cds.MS.gene40299.t1;Parent=MS.gene40299.t1 |
| Gene Sequence |
| Protein sequence |
