Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92714.t1 | XP_003599263.1 | 99.3 | 301 | 2 | 0 | 6 | 306 | 80 | 380 | 2.70E-170 | 607.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92714.t1 | Q9SFB3 | 76.4 | 305 | 72 | 0 | 2 | 306 | 70 | 374 | 8.1e-139 | 494.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92714.t1 | G7IWV1 | 99.3 | 301 | 2 | 0 | 6 | 306 | 80 | 380 | 2.0e-170 | 607.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene92714 | 0.830813 | 2.38E-55 | -1.69E-46 |
| MS.gene049170 | MS.gene92714 | 0.833171 | 6.22E-56 | -1.69E-46 |
| MS.gene049171 | MS.gene92714 | 0.810332 | 1.22E-50 | -1.69E-46 |
| MS.gene049222 | MS.gene92714 | 0.836526 | 8.88E-57 | -1.69E-46 |
| MS.gene049356 | MS.gene92714 | 0.816695 | 4.84E-52 | -1.69E-46 |
| MS.gene049369 | MS.gene92714 | 0.810325 | 1.22E-50 | -1.69E-46 |
| MS.gene049427 | MS.gene92714 | 0.842651 | 2.27E-58 | -1.69E-46 |
| MS.gene049609 | MS.gene92714 | 0.875857 | 2.21E-68 | -1.69E-46 |
| MS.gene049633 | MS.gene92714 | 0.81121 | 7.85E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene92714 | 0.847069 | 1.46E-59 | -1.69E-46 |
| MS.gene050301 | MS.gene92714 | 0.805717 | 1.17E-49 | -1.69E-46 |
| MS.gene050432 | MS.gene92714 | 0.809032 | 2.31E-50 | -1.69E-46 |
| MS.gene050529 | MS.gene92714 | 0.833986 | 3.89E-56 | -1.69E-46 |
| MS.gene050538 | MS.gene92714 | 0.863224 | 2.90E-64 | -1.69E-46 |
| MS.gene050593 | MS.gene92714 | 0.884883 | 1.31E-71 | -1.69E-46 |
| MS.gene050625 | MS.gene92714 | 0.82195 | 3.07E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene92714 | 0.907217 | 6.43E-81 | -1.69E-46 |
| MS.gene050747 | MS.gene92714 | 0.878542 | 2.58E-69 | -1.69E-46 |
| MS.gene050772 | MS.gene92714 | 0.860627 | 1.81E-63 | -1.69E-46 |
| MS.gene05080 | MS.gene92714 | 0.858173 | 9.88E-63 | -1.69E-46 |
| MS.gene050812 | MS.gene92714 | 0.843282 | 1.54E-58 | -1.69E-46 |
| MS.gene05081 | MS.gene92714 | 0.838472 | 2.82E-57 | -1.69E-46 |
| MS.gene050950 | MS.gene92714 | 0.874837 | 4.94E-68 | -1.69E-46 |
| MS.gene05105 | MS.gene92714 | 0.889744 | 1.84E-73 | -1.69E-46 |
| MS.gene051387 | MS.gene92714 | 0.865863 | 4.34E-65 | -1.69E-46 |
| MS.gene051525 | MS.gene92714 | 0.845562 | 3.76E-59 | -1.69E-46 |
| MS.gene051582 | MS.gene92714 | 0.839994 | 1.14E-57 | -1.69E-46 |
| MS.gene051605 | MS.gene92714 | 0.814696 | 1.35E-51 | -1.69E-46 |
| MS.gene051617 | MS.gene92714 | 0.826637 | 2.43E-54 | -1.69E-46 |
| MS.gene051666 | MS.gene92714 | 0.876378 | 1.46E-68 | -1.69E-46 |
| MS.gene051734 | MS.gene92714 | 0.844661 | 6.59E-59 | -1.69E-46 |
| MS.gene051838 | MS.gene92714 | 0.864357 | 1.29E-64 | -1.69E-46 |
| MS.gene051858 | MS.gene92714 | 0.822333 | 2.51E-53 | -1.69E-46 |
| MS.gene052134 | MS.gene92714 | 0.820201 | 7.77E-53 | -1.69E-46 |
| MS.gene052135 | MS.gene92714 | 0.811156 | 8.06E-51 | -1.69E-46 |
| MS.gene052136 | MS.gene92714 | 0.800738 | 1.25E-48 | -1.69E-46 |
| MS.gene052188 | MS.gene92714 | 0.854468 | 1.21E-61 | -1.69E-46 |
| MS.gene052253 | MS.gene92714 | 0.812196 | 4.79E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene92714 | 0.856629 | 2.83E-62 | -1.69E-46 |
| MS.gene052340 | MS.gene92714 | 0.83938 | 1.64E-57 | -1.69E-46 |
| MS.gene052346 | MS.gene92714 | 0.812457 | 4.20E-51 | -1.69E-46 |
| MS.gene052414 | MS.gene92714 | 0.843846 | 1.09E-58 | -1.69E-46 |
| MS.gene052421 | MS.gene92714 | 0.854688 | 1.04E-61 | -1.69E-46 |
| MS.gene052469 | MS.gene92714 | 0.808392 | 3.17E-50 | -1.69E-46 |
| MS.gene052481 | MS.gene92714 | 0.846574 | 1.99E-59 | -1.69E-46 |
| MS.gene052484 | MS.gene92714 | 0.837666 | 4.54E-57 | -1.69E-46 |
| MS.gene052485 | MS.gene92714 | 0.829876 | 4.03E-55 | -1.69E-46 |
| MS.gene052501 | MS.gene92714 | 0.854692 | 1.04E-61 | -1.69E-46 |
| MS.gene052503 | MS.gene92714 | 0.813983 | 1.94E-51 | -1.69E-46 |
| MS.gene052505 | MS.gene92714 | 0.856619 | 2.85E-62 | -1.69E-46 |
| MS.gene052615 | MS.gene92714 | 0.815134 | 1.08E-51 | -1.69E-46 |
| MS.gene052825 | MS.gene92714 | 0.80249 | 5.47E-49 | -1.69E-46 |
| MS.gene052870 | MS.gene92714 | 0.845299 | 4.43E-59 | -1.69E-46 |
| MS.gene052872 | MS.gene92714 | 0.838611 | 2.60E-57 | -1.69E-46 |
| MS.gene052982 | MS.gene92714 | 0.849735 | 2.67E-60 | -1.69E-46 |
| MS.gene053009 | MS.gene92714 | 0.807537 | 4.82E-50 | -1.69E-46 |
| MS.gene053103 | MS.gene92714 | 0.840249 | 9.75E-58 | -1.69E-46 |
| MS.gene053104 | MS.gene92714 | 0.85095 | 1.22E-60 | -1.69E-46 |
| MS.gene053107 | MS.gene92714 | 0.846713 | 1.83E-59 | -1.69E-46 |
| MS.gene053203 | MS.gene92714 | 0.801918 | 7.18E-49 | -1.69E-46 |
| MS.gene053207 | MS.gene92714 | 0.851348 | 9.41E-61 | -1.69E-46 |
| MS.gene053209 | MS.gene92714 | 0.844997 | 5.34E-59 | -1.69E-46 |
| MS.gene053213 | MS.gene92714 | 0.824358 | 8.43E-54 | -1.69E-46 |
| MS.gene053286 | MS.gene92714 | 0.815196 | 1.05E-51 | -1.69E-46 |
| MS.gene053322 | MS.gene92714 | 0.823173 | 1.60E-53 | -1.69E-46 |
| MS.gene053479 | MS.gene92714 | 0.80096 | 1.13E-48 | -1.69E-46 |
| MS.gene053557 | MS.gene92714 | 0.80317 | 3.96E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene92714 | 0.861442 | 1.02E-63 | -1.69E-46 |
| MS.gene053579 | MS.gene92714 | 0.81688 | 4.40E-52 | -1.69E-46 |
| MS.gene053632 | MS.gene92714 | 0.805278 | 1.44E-49 | -1.69E-46 |
| MS.gene053824 | MS.gene92714 | 0.83122 | 1.89E-55 | -1.69E-46 |
| MS.gene053912 | MS.gene92714 | 0.816122 | 6.51E-52 | -1.69E-46 |
| MS.gene053916 | MS.gene92714 | 0.81125 | 7.69E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene92714 | 0.823558 | 1.30E-53 | -1.69E-46 |
| MS.gene054600 | MS.gene92714 | 0.816132 | 6.47E-52 | -1.69E-46 |
| MS.gene054642 | MS.gene92714 | 0.813968 | 1.96E-51 | -1.69E-46 |
| MS.gene054884 | MS.gene92714 | -0.819311 | 1.24E-52 | -1.69E-46 |
| MS.gene054927 | MS.gene92714 | 0.850219 | 1.96E-60 | -1.69E-46 |
| MS.gene05505 | MS.gene92714 | 0.849124 | 3.96E-60 | -1.69E-46 |
| MS.gene055116 | MS.gene92714 | 0.869082 | 4.04E-66 | -1.69E-46 |
| MS.gene055206 | MS.gene92714 | 0.836458 | 9.25E-57 | -1.69E-46 |
| MS.gene055224 | MS.gene92714 | 0.853768 | 1.92E-61 | -1.69E-46 |
| MS.gene055289 | MS.gene92714 | 0.856024 | 4.25E-62 | -1.69E-46 |
| MS.gene055369 | MS.gene92714 | 0.810182 | 1.31E-50 | -1.69E-46 |
| MS.gene055370 | MS.gene92714 | 0.801332 | 9.47E-49 | -1.69E-46 |
| MS.gene055412 | MS.gene92714 | 0.825398 | 4.79E-54 | -1.69E-46 |
| MS.gene055502 | MS.gene92714 | 0.806637 | 7.47E-50 | -1.69E-46 |
| MS.gene055536 | MS.gene92714 | -0.80671 | 7.21E-50 | -1.69E-46 |
| MS.gene055539 | MS.gene92714 | 0.851502 | 8.51E-61 | -1.69E-46 |
| MS.gene05553 | MS.gene92714 | 0.813485 | 2.50E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene92714 | 0.83477 | 2.47E-56 | -1.69E-46 |
| MS.gene055722 | MS.gene92714 | 0.84684 | 1.69E-59 | -1.69E-46 |
| MS.gene055741 | MS.gene92714 | 0.827873 | 1.23E-54 | -1.69E-46 |
| MS.gene055744 | MS.gene92714 | 0.829555 | 4.82E-55 | -1.69E-46 |
| MS.gene05592 | MS.gene92714 | 0.840799 | 7.00E-58 | -1.69E-46 |
| MS.gene055941 | MS.gene92714 | 0.822496 | 2.30E-53 | -1.69E-46 |
| MS.gene056083 | MS.gene92714 | 0.81618 | 6.32E-52 | -1.69E-46 |
| MS.gene056166 | MS.gene92714 | 0.81618 | 6.32E-52 | -1.69E-46 |
| MS.gene056407 | MS.gene92714 | 0.841514 | 4.54E-58 | -1.69E-46 |
| MS.gene056410 | MS.gene92714 | 0.811074 | 8.40E-51 | -1.69E-46 |
| MS.gene056422 | MS.gene92714 | 0.811155 | 8.06E-51 | -1.69E-46 |
| MS.gene056511 | MS.gene92714 | 0.865048 | 7.83E-65 | -1.69E-46 |
| MS.gene056659 | MS.gene92714 | 0.81683 | 4.52E-52 | -1.69E-46 |
| MS.gene056796 | MS.gene92714 | 0.828752 | 7.55E-55 | -1.69E-46 |
| MS.gene056877 | MS.gene92714 | 0.803713 | 3.06E-49 | -1.69E-46 |
| MS.gene056897 | MS.gene92714 | 0.854366 | 1.29E-61 | -1.69E-46 |
| MS.gene056947 | MS.gene92714 | 0.805739 | 1.15E-49 | -1.69E-46 |
| MS.gene057011 | MS.gene92714 | 0.84881 | 4.83E-60 | -1.69E-46 |
| MS.gene057076 | MS.gene92714 | 0.843501 | 1.35E-58 | -1.69E-46 |
| MS.gene057124 | MS.gene92714 | 0.867435 | 1.37E-65 | -1.69E-46 |
| MS.gene057129 | MS.gene92714 | 0.806436 | 8.23E-50 | -1.69E-46 |
| MS.gene057146 | MS.gene92714 | 0.828657 | 7.96E-55 | -1.69E-46 |
| MS.gene057310 | MS.gene92714 | 0.809047 | 2.29E-50 | -1.69E-46 |
| MS.gene057331 | MS.gene92714 | 0.859756 | 3.32E-63 | -1.69E-46 |
| MS.gene057332 | MS.gene92714 | 0.810857 | 9.36E-51 | -1.69E-46 |
| MS.gene05735 | MS.gene92714 | 0.801552 | 8.53E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene92714 | 0.849672 | 2.78E-60 | -1.69E-46 |
| MS.gene057658 | MS.gene92714 | 0.8384 | 2.94E-57 | -1.69E-46 |
| MS.gene057734 | MS.gene92714 | 0.827238 | 1.75E-54 | -1.69E-46 |
| MS.gene057856 | MS.gene92714 | 0.812492 | 4.13E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene92714 | 0.849797 | 2.57E-60 | -1.69E-46 |
| MS.gene058019 | MS.gene92714 | 0.827317 | 1.67E-54 | -1.69E-46 |
| MS.gene058082 | MS.gene92714 | 0.843159 | 1.66E-58 | -1.69E-46 |
| MS.gene058120 | MS.gene92714 | 0.808116 | 3.63E-50 | -1.69E-46 |
| MS.gene058130 | MS.gene92714 | 0.844696 | 6.44E-59 | -1.69E-46 |
| MS.gene058233 | MS.gene92714 | 0.821648 | 3.61E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene92714 | 0.842013 | 3.35E-58 | -1.69E-46 |
| MS.gene058323 | MS.gene92714 | 0.822706 | 2.05E-53 | -1.69E-46 |
| MS.gene058338 | MS.gene92714 | 0.806924 | 6.49E-50 | -1.69E-46 |
| MS.gene058365 | MS.gene92714 | 0.826966 | 2.03E-54 | -1.69E-46 |
| MS.gene058376 | MS.gene92714 | 0.832166 | 1.10E-55 | -1.69E-46 |
| MS.gene05837 | MS.gene92714 | 0.842082 | 3.21E-58 | -1.69E-46 |
| MS.gene058419 | MS.gene92714 | 0.803859 | 2.85E-49 | -1.69E-46 |
| MS.gene058444 | MS.gene92714 | 0.849351 | 3.42E-60 | -1.69E-46 |
| MS.gene058544 | MS.gene92714 | 0.822823 | 1.93E-53 | -1.69E-46 |
| MS.gene058660 | MS.gene92714 | 0.824536 | 7.65E-54 | -1.69E-46 |
| MS.gene058700 | MS.gene92714 | 0.884457 | 1.89E-71 | -1.69E-46 |
| MS.gene058723 | MS.gene92714 | 0.809997 | 1.43E-50 | -1.69E-46 |
| MS.gene058748 | MS.gene92714 | 0.82892 | 6.88E-55 | -1.69E-46 |
| MS.gene058773 | MS.gene92714 | 0.802739 | 4.86E-49 | -1.69E-46 |
| MS.gene058787 | MS.gene92714 | 0.803898 | 2.80E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene92714 | 0.834961 | 2.21E-56 | -1.69E-46 |
| MS.gene058948 | MS.gene92714 | 0.828777 | 7.44E-55 | -1.69E-46 |
| MS.gene059023 | MS.gene92714 | 0.840544 | 8.16E-58 | -1.69E-46 |
| MS.gene05913 | MS.gene92714 | 0.800053 | 1.73E-48 | -1.69E-46 |
| MS.gene05934 | MS.gene92714 | 0.849953 | 2.32E-60 | -1.69E-46 |
| MS.gene059366 | MS.gene92714 | 0.804893 | 1.74E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene92714 | 0.809161 | 2.17E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene92714 | 0.853898 | 1.76E-61 | -1.69E-46 |
| MS.gene05959 | MS.gene92714 | 0.8119 | 5.55E-51 | -1.69E-46 |
| MS.gene059667 | MS.gene92714 | 0.833696 | 4.60E-56 | -1.69E-46 |
| MS.gene059676 | MS.gene92714 | 0.856368 | 3.37E-62 | -1.69E-46 |
| MS.gene059688 | MS.gene92714 | 0.880025 | 7.71E-70 | -1.69E-46 |
| MS.gene059692 | MS.gene92714 | 0.871175 | 8.35E-67 | -1.69E-46 |
| MS.gene059695 | MS.gene92714 | 0.873624 | 1.27E-67 | -1.69E-46 |
| MS.gene059711 | MS.gene92714 | 0.802351 | 5.85E-49 | -1.69E-46 |
| MS.gene059718 | MS.gene92714 | 0.82992 | 3.93E-55 | -1.69E-46 |
| MS.gene059902 | MS.gene92714 | 0.822701 | 2.06E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene92714 | 0.843037 | 1.79E-58 | -1.69E-46 |
| MS.gene060403 | MS.gene92714 | 0.839732 | 1.33E-57 | -1.69E-46 |
| MS.gene060804 | MS.gene92714 | 0.862575 | 4.60E-64 | -1.69E-46 |
| MS.gene060818 | MS.gene92714 | 0.81095 | 8.93E-51 | -1.69E-46 |
| MS.gene060835 | MS.gene92714 | 0.859379 | 4.31E-63 | -1.69E-46 |
| MS.gene060837 | MS.gene92714 | 0.85435 | 1.31E-61 | -1.69E-46 |
| MS.gene06092 | MS.gene92714 | 0.890553 | 8.88E-74 | -1.69E-46 |
| MS.gene061041 | MS.gene92714 | 0.822055 | 2.91E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene92714 | -0.812314 | 4.51E-51 | -1.69E-46 |
| MS.gene061150 | MS.gene92714 | 0.821751 | 3.42E-53 | -1.69E-46 |
| MS.gene061154 | MS.gene92714 | 0.882528 | 9.66E-71 | -1.69E-46 |
| MS.gene061200 | MS.gene92714 | 0.809699 | 1.66E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92714.t1 | MTR_3g030950 | 99.344 | 305 | 2 | 0 | 2 | 306 | 76 | 380 | 0.0 | 622 |
| MS.gene92714.t1 | MTR_3g030975 | 99.528 | 212 | 1 | 0 | 95 | 306 | 1 | 212 | 2.58e-153 | 427 |
| MS.gene92714.t1 | MTR_8g104810 | 89.062 | 64 | 7 | 0 | 28 | 91 | 43 | 106 | 2.84e-35 | 124 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92714.t1 | AT3G08010 | 76.393 | 305 | 72 | 0 | 2 | 306 | 70 | 374 | 1.71e-178 | 498 |
Find 68 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGGATTGTATTGGCTTC+TGG | 0.212413 | 3.1:+22864020 | MS.gene92714:CDS |
| CTAAAGAAGCGAATGTTTCT+AGG | 0.224379 | 3.1:-22859381 | None:intergenic |
| ATACTATTAATAACATTATT+AGG | 0.258304 | 3.1:-22859306 | None:intergenic |
| AATCATACTCACCCGTTTAC+TGG | 0.258872 | 3.1:-22860964 | None:intergenic |
| GAAAGATTTGGATATGGTTC+TGG | 0.270200 | 3.1:+22863157 | MS.gene92714:CDS |
| CTAGAAACATTCGCTTCTTT+AGG | 0.283849 | 3.1:+22859382 | MS.gene92714:CDS |
| TGGGCTAGATCTTGATTTAT+TGG | 0.288153 | 3.1:+22863177 | MS.gene92714:CDS |
| GGGCTAGATCTTGATTTATT+GGG | 0.315434 | 3.1:+22863178 | MS.gene92714:CDS |
| ATACTGTCAGGATCAGCTTC+TGG | 0.321460 | 3.1:-22859168 | None:intergenic |
| TGTTGCTATTTGTGATGAAT+TGG | 0.332766 | 3.1:+22859347 | MS.gene92714:CDS |
| GTTGCAAAAGGATTGTCTAA+TGG | 0.366788 | 3.1:-22862758 | None:intergenic |
| ATGCTAGAGGAAAGAAACTT+TGG | 0.380045 | 3.1:+22859232 | MS.gene92714:CDS |
| TCTCGTGCTAAAATATTATC+AGG | 0.382198 | 3.1:+22863250 | MS.gene92714:CDS |
| TCAGAGGAAAGATTTGGATA+TGG | 0.386627 | 3.1:+22863151 | MS.gene92714:CDS |
| GAAGCAGCTAAGAAAGCTTC+TGG | 0.387670 | 3.1:+22863959 | MS.gene92714:CDS |
| AATAATTTGTACAATTATAC+AGG | 0.388555 | 3.1:-22864067 | None:intergenic |
| TTTCCTCTAGCATCAAGAAT+TGG | 0.395207 | 3.1:-22859222 | None:intergenic |
| TAAGAGCTCTTCCCAGTAAA+CGG | 0.396897 | 3.1:+22860952 | MS.gene92714:CDS |
| TTAGATTCTGAGGATTGTAT+TGG | 0.404887 | 3.1:+22864013 | MS.gene92714:CDS |
| TCAGCCTCAGAGGAAAGATT+TGG | 0.414247 | 3.1:+22863145 | MS.gene92714:CDS |
| GAAGATGCAACAGCCAATCC+TGG | 0.417168 | 3.1:-22863229 | None:intergenic |
| AGATAACATGTTTCAGCAGT+TGG | 0.424045 | 3.1:-22859141 | None:intergenic |
| TCTGGAAGTTTCGTTGCAAA+AGG | 0.424079 | 3.1:-22862770 | None:intergenic |
| TACTGTCAGGATCAGCTTCT+GGG | 0.430219 | 3.1:-22859167 | None:intergenic |
| AAAGATTTGGATATGGTTCT+GGG | 0.430953 | 3.1:+22863158 | MS.gene92714:CDS |
| GAAACATCCTGGATTTCAAA+AGG | 0.431524 | 3.1:+22862718 | MS.gene92714:CDS |
| CCTCAGAATCTAACTCATCT+TGG | 0.433316 | 3.1:-22864003 | None:intergenic |
| AACTAAAGAAGCTGAAGCTT+GGG | 0.435084 | 3.1:+22863937 | MS.gene92714:CDS |
| GATAACATGTTTCAGCAGTT+GGG | 0.444982 | 3.1:-22859140 | None:intergenic |
| AATTATTACAAAAGCATGTA+AGG | 0.453031 | 3.1:+22860920 | MS.gene92714:CDS |
| GCGTGCAGTGTCCGTTTCAA+TGG | 0.453511 | 3.1:-22863843 | None:intergenic |
| TCTAGCATCAAGAATTGGTC+TGG | 0.461218 | 3.1:-22859217 | None:intergenic |
| CAACTAAAGAAGCTGAAGCT+TGG | 0.463491 | 3.1:+22863936 | MS.gene92714:CDS |
| ATCCTGACAGTATATTAAGC+TGG | 0.466941 | 3.1:+22859178 | MS.gene92714:CDS |
| GTCTAATGGTAAAAGAGGCT+TGG | 0.468563 | 3.1:-22862744 | None:intergenic |
| CTAACTCATCTTGGATTGCT+AGG | 0.473543 | 3.1:-22863994 | None:intergenic |
| TGCTAGAGGAAAGAAACTTT+GGG | 0.479591 | 3.1:+22859233 | MS.gene92714:CDS |
| AAGAGCTCTTCCCAGTAAAC+GGG | 0.480174 | 3.1:+22860953 | MS.gene92714:CDS |
| AACAGCCAATCCTGGGATCA+AGG | 0.490579 | 3.1:-22863221 | None:intergenic |
| TCCCAGCTTAATATACTGTC+AGG | 0.490831 | 3.1:-22859180 | None:intergenic |
| AAATCTTTCCTCTGAGGCTG+AGG | 0.496486 | 3.1:-22863143 | None:intergenic |
| TACAATTATACAGGTGGAGG+TGG | 0.500673 | 3.1:-22864058 | None:intergenic |
| AAATTCCAACTGAAAGAGTC+AGG | 0.502775 | 3.1:-22863871 | None:intergenic |
| CAGTATATTAAGCTGGGAGT+TGG | 0.503857 | 3.1:+22859185 | MS.gene92714:CDS |
| ATCATACTCACCCGTTTACT+GGG | 0.505577 | 3.1:-22860963 | None:intergenic |
| GGAGCTCTGTTCCATTGAAA+CGG | 0.513749 | 3.1:+22863832 | MS.gene92714:CDS |
| AGCTTCAGCTTCTTTAGTTG+AGG | 0.517831 | 3.1:-22863933 | None:intergenic |
| ACAAAAGCATGTAAGGAGCT+TGG | 0.520013 | 3.1:+22860927 | MS.gene92714:CDS |
| ACTGTATACACGAAACATCC+TGG | 0.520597 | 3.1:+22862707 | MS.gene92714:CDS |
| TTTGTTCAGTTACCTTACTC+AGG | 0.530705 | 3.1:+22862818 | MS.gene92714:CDS |
| GAAGACCTTGATCCCAGGAT+TGG | 0.531133 | 3.1:+22863216 | MS.gene92714:CDS |
| AGACCAATTCTTGATGCTAG+AGG | 0.536152 | 3.1:+22859219 | MS.gene92714:CDS |
| TTGTACAATTATACAGGTGG+AGG | 0.539597 | 3.1:-22864061 | None:intergenic |
| AAGCGAATGTTTCTAGGCAC+AGG | 0.539819 | 3.1:-22859375 | None:intergenic |
| TCCTGACAGTATATTAAGCT+GGG | 0.544833 | 3.1:+22859179 | MS.gene92714:CDS |
| CCAAGATGAGTTAGATTCTG+AGG | 0.545325 | 3.1:+22864003 | MS.gene92714:CDS |
| GGATTGTCTAATGGTAAAAG+AGG | 0.552010 | 3.1:-22862749 | None:intergenic |
| AAACATCCTGGATTTCAAAA+GGG | 0.557929 | 3.1:+22862719 | MS.gene92714:CDS |
| GACGAGAAGACCTTGATCCC+AGG | 0.562521 | 3.1:+22863211 | MS.gene92714:CDS |
| TCAGCTTCTTTAGTTGAGGT+AGG | 0.564251 | 3.1:-22863929 | None:intergenic |
| TATTAATAGTATCACTCTCA+AGG | 0.566789 | 3.1:+22859317 | MS.gene92714:CDS |
| AAGATGCAACAGCCAATCCT+GGG | 0.585967 | 3.1:-22863228 | None:intergenic |
| AGAGGAGGCCTCAGCCTCAG+AGG | 0.611276 | 3.1:+22863135 | MS.gene92714:CDS |
| TTTCAGTTGGAATTTCGACT+CGG | 0.613028 | 3.1:+22863879 | MS.gene92714:CDS |
| AATTTGTACAATTATACAGG+TGG | 0.621554 | 3.1:-22864064 | None:intergenic |
| TCTAACCTGACTCTTTCAGT+TGG | 0.624714 | 3.1:+22863866 | MS.gene92714:CDS |
| ATATCCAAATCTTTCCTCTG+AGG | 0.661900 | 3.1:-22863149 | None:intergenic |
| GCAGCTAAGAAAGCTTCTGG+AGG | 0.687768 | 3.1:+22863962 | MS.gene92714:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAATAAGATTAAAATCTA+AGG | + | chr3.1:22861711-22861730 | MS.gene92714:intron | 10.0% |
| !! | ATACTATTAATAACATTATT+AGG | - | chr3.1:22859309-22859328 | None:intergenic | 10.0% |
| !! | TAAATAAGATTAAAATCTAA+GGG | + | chr3.1:22861712-22861731 | MS.gene92714:intron | 10.0% |
| !! | TATAAAAAGAAAAGAAAAAA+AGG | + | chr3.1:22861923-22861942 | MS.gene92714:intron | 10.0% |
| !!! | ATTTTAATTAAAAATTACCT+AGG | + | chr3.1:22863340-22863359 | MS.gene92714:intron | 10.0% |
| !!! | ATTTTCAATAATTTTACTTT+GGG | + | chr3.1:22861181-22861200 | MS.gene92714:intron | 10.0% |
| !!! | TATTTTCAATAATTTTACTT+TGG | + | chr3.1:22861180-22861199 | MS.gene92714:intron | 10.0% |
| !! | AAATATTCTTAGAAAGTAAA+TGG | - | chr3.1:22861165-22861184 | None:intergenic | 15.0% |
| !! | AATATTCTTAGAAAGTAAAT+GGG | - | chr3.1:22861164-22861183 | None:intergenic | 15.0% |
| !! | ATAAATATTGAATGAGTTAA+TGG | + | chr3.1:22861470-22861489 | MS.gene92714:intron | 15.0% |
| !! | TATTATATATTGTTAGAGTA+AGG | + | chr3.1:22860848-22860867 | MS.gene92714:intron | 15.0% |
| !! | TGAAAAAAGTTTATGAAAAA+CGG | - | chr3.1:22859683-22859702 | None:intergenic | 15.0% |
| !!! | AATTTTGTGAATTTTCAAAA+AGG | + | chr3.1:22861299-22861318 | MS.gene92714:intron | 15.0% |
| !!! | ATAAAAGTAATTTTAAACCT+AGG | - | chr3.1:22863360-22863379 | None:intergenic | 15.0% |
| !!! | TCAACAATAATTTTTTGTTT+TGG | + | chr3.1:22862137-22862156 | MS.gene92714:intron | 15.0% |
| !! | AAAAGAAAAGAAAAAAAGGT+CGG | + | chr3.1:22861927-22861946 | MS.gene92714:intron | 20.0% |
| !! | AAACTAAACACAGAAAATAA+AGG | - | chr3.1:22860681-22860700 | None:intergenic | 20.0% |
| !! | AAGATGAAAAAAGAAACAAA+GGG | - | chr3.1:22862364-22862383 | None:intergenic | 20.0% |
| !! | ACACTTTATAAACTCTATTT+AGG | - | chr3.1:22860556-22860575 | None:intergenic | 20.0% |
| !! | ACTATGTCATATATCTTTAT+TGG | + | chr3.1:22860493-22860512 | MS.gene92714:intron | 20.0% |
| !! | ATATGGTATAACATGAAAAA+TGG | - | chr3.1:22861547-22861566 | None:intergenic | 20.0% |
| !! | TAAAGTGATTAAACTGAATA+TGG | - | chr3.1:22861897-22861916 | None:intergenic | 20.0% |
| !! | TAAGATGAAAAAAGAAACAA+AGG | - | chr3.1:22862365-22862384 | None:intergenic | 20.0% |
| !! | TATGAACAAAATATGAAAAC+TGG | - | chr3.1:22863285-22863304 | None:intergenic | 20.0% |
| !! | TGAATTATGAAATGTTCATA+AGG | + | chr3.1:22859534-22859553 | MS.gene92714:intron | 20.0% |
| !! | TTAAGTTAGCATACAAAATT+TGG | + | chr3.1:22862330-22862349 | MS.gene92714:intron | 20.0% |
| !! | TTATGTTTGGTACATATTAA+AGG | - | chr3.1:22860812-22860831 | None:intergenic | 20.0% |
| !!! | AATTATTACAAAAGCATGTA+AGG | + | chr3.1:22860920-22860939 | MS.gene92714:CDS | 20.0% |
| !!! | ATAAAACATTGTGAATCTTT+TGG | + | chr3.1:22862579-22862598 | MS.gene92714:intron | 20.0% |
| !!! | ATACTTTGAGAATTAAATTG+AGG | - | chr3.1:22860168-22860187 | None:intergenic | 20.0% |
| !!! | TACTTTGAGAATTAAATTGA+GGG | - | chr3.1:22860167-22860186 | None:intergenic | 20.0% |
| !!! | TTATTGGCTAACATTAATTT+CGG | - | chr3.1:22861622-22861641 | None:intergenic | 20.0% |
| !!! | TTCTTCAATAAATTTGTTGA+AGG | - | chr3.1:22863409-22863428 | None:intergenic | 20.0% |
| !!! | TTTAAAGCGTATTTTCAAAA+CGG | + | chr3.1:22861333-22861352 | MS.gene92714:intron | 20.0% |
| ! | AAAAATTATTGTTGAGCGTT+TGG | - | chr3.1:22862132-22862151 | None:intergenic | 25.0% |
| ! | AAAATGTATGATAGCATCAT+AGG | - | chr3.1:22863480-22863499 | None:intergenic | 25.0% |
| ! | AAATTTGTGAACAACTGAAA+GGG | + | chr3.1:22861988-22862007 | MS.gene92714:intron | 25.0% |
| ! | AATATGTACCAAACATAACA+TGG | + | chr3.1:22860814-22860833 | MS.gene92714:intron | 25.0% |
| ! | ACTACTTATTGTTTACGTTA+CGG | + | chr3.1:22859421-22859440 | MS.gene92714:intron | 25.0% |
| ! | AGATGAAAAAAGAAACAAAG+GGG | - | chr3.1:22862363-22862382 | None:intergenic | 25.0% |
| ! | ATAAAAAAAACATTATGCCG+TGG | + | chr3.1:22860040-22860059 | MS.gene92714:intron | 25.0% |
| ! | ATAAATGTTGACAAAAAAGC+TGG | + | chr3.1:22863527-22863546 | MS.gene92714:intron | 25.0% |
| ! | ATATACGTTAGAGACTAAAT+TGG | + | chr3.1:22860364-22860383 | MS.gene92714:intron | 25.0% |
| ! | ATCATTTACTTTGATTACAC+TGG | + | chr3.1:22862942-22862961 | MS.gene92714:intron | 25.0% |
| ! | ATGTAACATATGTCTTAATG+TGG | + | chr3.1:22862489-22862508 | MS.gene92714:intron | 25.0% |
| ! | ATTCCACAAATAAGTACATA+TGG | - | chr3.1:22861401-22861420 | None:intergenic | 25.0% |
| ! | ATTTCTTTCATAAACTGTCT+TGG | - | chr3.1:22859804-22859823 | None:intergenic | 25.0% |
| ! | CACTTTCATAAGTTAATTAG+AGG | - | chr3.1:22861441-22861460 | None:intergenic | 25.0% |
| ! | CTCTAATTAACTTATGAAAG+TGG | + | chr3.1:22861439-22861458 | MS.gene92714:intron | 25.0% |
| ! | TAAGGTAATTCTACAATCAA+AGG | - | chr3.1:22863674-22863693 | None:intergenic | 25.0% |
| ! | TAATTAACTTATGAAAGTGG+AGG | + | chr3.1:22861442-22861461 | MS.gene92714:intron | 25.0% |
| ! | TAATTCAGTGCTTATGTATA+AGG | - | chr3.1:22863692-22863711 | None:intergenic | 25.0% |
| ! | TAATTGGCAATAAAACTAAG+TGG | + | chr3.1:22861095-22861114 | MS.gene92714:intron | 25.0% |
| ! | TACTTCAGAAACTAAATTGA+TGG | + | chr3.1:22860396-22860415 | MS.gene92714:intron | 25.0% |
| ! | TATTAATAGTATCACTCTCA+AGG | + | chr3.1:22859317-22859336 | MS.gene92714:CDS | 25.0% |
| ! | TGATGAATTTAAGAATGACA+TGG | - | chr3.1:22861749-22861768 | None:intergenic | 25.0% |
| ! | TGTAACATATGTCTTAATGT+GGG | + | chr3.1:22862490-22862509 | MS.gene92714:intron | 25.0% |
| ! | TTCGATAAACTGATTAACTA+TGG | + | chr3.1:22859572-22859591 | MS.gene92714:intron | 25.0% |
| !! | ACATGGTTTTTCATGTATTT+AGG | + | chr3.1:22862883-22862902 | MS.gene92714:intron | 25.0% |
| !! | ACGAGTTTTCATATACTTTA+GGG | + | chr3.1:22860294-22860313 | MS.gene92714:intron | 25.0% |
| !! | CATGGTTTTTCATGTATTTA+GGG | + | chr3.1:22862884-22862903 | MS.gene92714:intron | 25.0% |
| !! | GTGTTTAGTTTCTTATGAAA+AGG | + | chr3.1:22860690-22860709 | MS.gene92714:intron | 25.0% |
| !! | TAAACTGAATATGGATTTTC+AGG | - | chr3.1:22861888-22861907 | None:intergenic | 25.0% |
| !! | TATTGGCTAACATTAATTTC+GGG | - | chr3.1:22861621-22861640 | None:intergenic | 25.0% |
| !! | TTAAAGCGTATTTTCAAAAC+GGG | + | chr3.1:22861334-22861353 | MS.gene92714:intron | 25.0% |
| !!! | AATTACTGATTTCAACAAGA+TGG | - | chr3.1:22862455-22862474 | None:intergenic | 25.0% |
| !!! | AGCTTTTGAATGTTTTTAAG+AGG | + | chr3.1:22862533-22862552 | MS.gene92714:intron | 25.0% |
| !!! | ATATGGATCTTCTTTGTTTT+TGG | - | chr3.1:22862428-22862447 | None:intergenic | 25.0% |
| !!! | ATTACTGATTTCAACAAGAT+GGG | - | chr3.1:22862454-22862473 | None:intergenic | 25.0% |
| !!! | TAAGTTTTGTCAAACTGTTT+GGG | + | chr3.1:22859634-22859653 | MS.gene92714:intron | 25.0% |
| !!! | TATGGATCTTCTTTGTTTTT+GGG | - | chr3.1:22862427-22862446 | None:intergenic | 25.0% |
| !!! | TATTCCTCTTGTTTTAGATA+AGG | + | chr3.1:22863032-22863051 | MS.gene92714:intron | 25.0% |
| AAAAGAAAAAAAGGTCGGAA+GGG | + | chr3.1:22861932-22861951 | MS.gene92714:intron | 30.0% | |
| AAACATCCTGGATTTCAAAA+GGG | + | chr3.1:22862719-22862738 | MS.gene92714:CDS | 30.0% | |
| AAACCTTGGATCAAAAACTT+AGG | + | chr3.1:22861136-22861155 | MS.gene92714:intron | 30.0% | |
| AAAGATTTGGATATGGTTCT+GGG | + | chr3.1:22863158-22863177 | MS.gene92714:CDS | 30.0% | |
| AACCTTGGATCAAAAACTTA+GGG | + | chr3.1:22861137-22861156 | MS.gene92714:intron | 30.0% | |
| AATACTGTCTGAAAGCAATT+TGG | + | chr3.1:22860633-22860652 | MS.gene92714:intron | 30.0% | |
| AATTTGTGAACAACTGAAAG+GGG | + | chr3.1:22861989-22862008 | MS.gene92714:intron | 30.0% | |
| AGTTGTTCACAAATTTCTAC+AGG | - | chr3.1:22861984-22862003 | None:intergenic | 30.0% | |
| ATGTACTTATTTGTGGAATG+TGG | + | chr3.1:22861402-22861421 | MS.gene92714:intron | 30.0% | |
| GAAATTTGTGAACAACTGAA+AGG | + | chr3.1:22861987-22862006 | MS.gene92714:intron | 30.0% | |
| GATGAAAAAAGAAACAAAGG+GGG | - | chr3.1:22862362-22862381 | None:intergenic | 30.0% | |
| GCAAACTAATCCATTTCTAT+TGG | - | chr3.1:22861051-22861070 | None:intergenic | 30.0% | |
| GCAATGAAATTTCAAATCCA+CGG | - | chr3.1:22861000-22861019 | None:intergenic | 30.0% | |
| GTAACATATGTCTTAATGTG+GGG | + | chr3.1:22862491-22862510 | MS.gene92714:intron | 30.0% | |
| GTACATATGGAACCTATTAT+TGG | - | chr3.1:22861388-22861407 | None:intergenic | 30.0% | |
| GTAGATATTTGATTGTGATG+TGG | + | chr3.1:22861954-22861973 | MS.gene92714:intron | 30.0% | |
| GTTATTGTTTACTTACTCAC+TGG | + | chr3.1:22859912-22859931 | MS.gene92714:intron | 30.0% | |
| GTTCCATATGTACTTATTTG+TGG | + | chr3.1:22861395-22861414 | MS.gene92714:intron | 30.0% | |
| GTTGTTCACAAATTTCTACA+GGG | - | chr3.1:22861983-22862002 | None:intergenic | 30.0% | |
| TAACATATGTCTTAATGTGG+GGG | + | chr3.1:22862492-22862511 | MS.gene92714:intron | 30.0% | |
| TAGATGAAGGTTCCAATAAT+AGG | + | chr3.1:22861373-22861392 | MS.gene92714:intron | 30.0% | |
| TATGTAAGCCATGTTATGTT+TGG | - | chr3.1:22860825-22860844 | None:intergenic | 30.0% | |
| TCAAATAAGTCAATCCAAAC+AGG | - | chr3.1:22859455-22859474 | None:intergenic | 30.0% | |
| TCTCGTGCTAAAATATTATC+AGG | + | chr3.1:22863250-22863269 | MS.gene92714:CDS | 30.0% | |
| TGTGATTCTCCGTAATATTA+AGG | - | chr3.1:22859967-22859986 | None:intergenic | 30.0% | |
| TGTTAGTTGTTACACTGATA+GGG | + | chr3.1:22860131-22860150 | MS.gene92714:intron | 30.0% | |
| TTATTGGAACCTTCATCTAA+TGG | - | chr3.1:22861372-22861391 | None:intergenic | 30.0% | |
| TTCTCCAAGACAGTTTAAAA+GGG | + | chr3.1:22859718-22859737 | MS.gene92714:intron | 30.0% | |
| TTGTTAGTTGTTACACTGAT+AGG | + | chr3.1:22860130-22860149 | MS.gene92714:intron | 30.0% | |
| ! | AAACTTCCAGAAGATCTTTT+TGG | + | chr3.1:22862782-22862801 | MS.gene92714:CDS | 30.0% |
| ! | AACTTCCAGAAGATCTTTTT+GGG | + | chr3.1:22862783-22862802 | MS.gene92714:CDS | 30.0% |
| ! | AGATAGAGAGAATGCATTTT+AGG | + | chr3.1:22861253-22861272 | MS.gene92714:intron | 30.0% |
| ! | AGTACTGGGATTTCAAATTA+AGG | + | chr3.1:22862036-22862055 | MS.gene92714:intron | 30.0% |
| ! | CATTGCTCTTTTCGAATATA+TGG | - | chr3.1:22861564-22861583 | None:intergenic | 30.0% |
| ! | GACGAGTTTTCATATACTTT+AGG | + | chr3.1:22860293-22860312 | MS.gene92714:intron | 30.0% |
| ! | TAAGTTTTTGATCCAAGGTT+TGG | - | chr3.1:22861137-22861156 | None:intergenic | 30.0% |
| ! | TCTTTAAGAATTGCATGACA+TGG | + | chr3.1:22862866-22862885 | MS.gene92714:intron | 30.0% |
| ! | TTAACTTGACCATTAGATGA+AGG | + | chr3.1:22861360-22861379 | MS.gene92714:intron | 30.0% |
| ! | TTAGATTCTGAGGATTGTAT+TGG | + | chr3.1:22864013-22864032 | MS.gene92714:CDS | 30.0% |
| !! | AGTGCTTGTCATTACTTTTA+TGG | + | chr3.1:22862666-22862685 | MS.gene92714:intron | 30.0% |
| !! | ATAGAAATGGATTAGTTTGC+TGG | + | chr3.1:22861051-22861070 | MS.gene92714:intron | 30.0% |
| !! | GTAAGTTTTGTCAAACTGTT+TGG | + | chr3.1:22859633-22859652 | MS.gene92714:intron | 30.0% |
| !! | GTCATTACTTTTATGGTTAG+AGG | + | chr3.1:22862673-22862692 | MS.gene92714:CDS | 30.0% |
| !! | TGTTGCTATTTGTGATGAAT+TGG | + | chr3.1:22859347-22859366 | MS.gene92714:CDS | 30.0% |
| !!! | ATGGATCTTCTTTGTTTTTG+GGG | - | chr3.1:22862426-22862445 | None:intergenic | 30.0% |
| AAATTCCAACTGAAAGAGTC+AGG | - | chr3.1:22863874-22863893 | None:intergenic | 35.0% | |
| AACATTCAAAAGCTGATGTC+AGG | - | chr3.1:22862527-22862546 | None:intergenic | 35.0% | |
| AACTAAAGAAGCTGAAGCTT+GGG | + | chr3.1:22863937-22863956 | MS.gene92714:CDS | 35.0% | |
| ACCTTGGATCAAAAACTTAG+GGG | + | chr3.1:22861138-22861157 | MS.gene92714:intron | 35.0% | |
| AGATAACATGTTTCAGCAGT+TGG | - | chr3.1:22859144-22859163 | None:intergenic | 35.0% | |
| ATAAAAGCTGCGACAGTAAA+TGG | - | chr3.1:22863803-22863822 | None:intergenic | 35.0% | |
| ATAGTTGAGTAGATGACGTA+TGG | - | chr3.1:22860478-22860497 | None:intergenic | 35.0% | |
| ATATCCAAATCTTTCCTCTG+AGG | - | chr3.1:22863152-22863171 | None:intergenic | 35.0% | |
| ATCCTGACAGTATATTAAGC+TGG | + | chr3.1:22859178-22859197 | MS.gene92714:CDS | 35.0% | |
| ATGCTAGAGGAAAGAAACTT+TGG | + | chr3.1:22859232-22859251 | MS.gene92714:CDS | 35.0% | |
| ATTTGTGAACAACTGAAAGG+GGG | + | chr3.1:22861990-22862009 | MS.gene92714:intron | 35.0% | |
| CAAGTAGGTACTTATTCTGT+TGG | + | chr3.1:22860100-22860119 | MS.gene92714:intron | 35.0% | |
| CATAAACTGTCTTGGAGAAA+TGG | - | chr3.1:22859796-22859815 | None:intergenic | 35.0% | |
| CTAAAGAAGCGAATGTTTCT+AGG | - | chr3.1:22859384-22859403 | None:intergenic | 35.0% | |
| CTAATCCATTTCTATTGGCA+AGG | - | chr3.1:22861046-22861065 | None:intergenic | 35.0% | |
| CTACAATCAAAGGAGGAATT+TGG | - | chr3.1:22863664-22863683 | None:intergenic | 35.0% | |
| CTAGAAACATTCGCTTCTTT+AGG | + | chr3.1:22859382-22859401 | MS.gene92714:CDS | 35.0% | |
| GAAAAATGGAAGCTTCTCAT+TGG | - | chr3.1:22861533-22861552 | None:intergenic | 35.0% | |
| GAAAAGAAAAAAAGGTCGGA+AGG | + | chr3.1:22861931-22861950 | MS.gene92714:intron | 35.0% | |
| GAAACATCCTGGATTTCAAA+AGG | + | chr3.1:22862718-22862737 | MS.gene92714:CDS | 35.0% | |
| GAAAGATTTGGATATGGTTC+TGG | + | chr3.1:22863157-22863176 | MS.gene92714:CDS | 35.0% | |
| GATAACATGTTTCAGCAGTT+GGG | - | chr3.1:22859143-22859162 | None:intergenic | 35.0% | |
| GCTAGAGTGACATTTAGTTA+TGG | + | chr3.1:22861203-22861222 | MS.gene92714:intron | 35.0% | |
| GCTGTATCACTAATTAACAC+GGG | - | chr3.1:22860534-22860553 | None:intergenic | 35.0% | |
| GGATTGTCTAATGGTAAAAG+AGG | - | chr3.1:22862752-22862771 | None:intergenic | 35.0% | |
| GGCTGTATCACTAATTAACA+CGG | - | chr3.1:22860535-22860554 | None:intergenic | 35.0% | |
| GGGCTAGATCTTGATTTATT+GGG | + | chr3.1:22863178-22863197 | MS.gene92714:CDS | 35.0% | |
| GGTAATTCTACAATCAAAGG+AGG | - | chr3.1:22863671-22863690 | None:intergenic | 35.0% | |
| GTTCTCCAAGACAGTTTAAA+AGG | + | chr3.1:22859717-22859736 | MS.gene92714:intron | 35.0% | |
| GTTGCAAAAGGATTGTCTAA+TGG | - | chr3.1:22862761-22862780 | None:intergenic | 35.0% | |
| TCAGAGGAAAGATTTGGATA+TGG | + | chr3.1:22863151-22863170 | MS.gene92714:CDS | 35.0% | |
| TCCTGACAGTATATTAAGCT+GGG | + | chr3.1:22859179-22859198 | MS.gene92714:CDS | 35.0% | |
| TGATTAACTATGGACCTGTT+TGG | + | chr3.1:22859582-22859601 | MS.gene92714:intron | 35.0% | |
| TGCTACAAACTATCCCTAAA+AGG | + | chr3.1:22860248-22860267 | MS.gene92714:intron | 35.0% | |
| TGCTAGAGGAAAGAAACTTT+GGG | + | chr3.1:22859233-22859252 | MS.gene92714:CDS | 35.0% | |
| TGCTCAGCAGAAAACTATAT+AGG | + | chr3.1:22861017-22861036 | MS.gene92714:intron | 35.0% | |
| TTCAACAAGATGGGCAAATA+TGG | - | chr3.1:22862445-22862464 | None:intergenic | 35.0% | |
| TTTCAGTTGGAATTTCGACT+CGG | + | chr3.1:22863879-22863898 | MS.gene92714:CDS | 35.0% | |
| TTTCCTCTAGCATCAAGAAT+TGG | - | chr3.1:22859225-22859244 | None:intergenic | 35.0% | |
| TTTGTAGCATCTCAACAACA+AGG | - | chr3.1:22860237-22860256 | None:intergenic | 35.0% | |
| TTTGTTCAGTTACCTTACTC+AGG | + | chr3.1:22862818-22862837 | MS.gene92714:CDS | 35.0% | |
| ! | ACAGCCTTATCTAAAACAAG+AGG | - | chr3.1:22863039-22863058 | None:intergenic | 35.0% |
| ! | ACTTCCAGAAGATCTTTTTG+GGG | + | chr3.1:22862784-22862803 | MS.gene92714:CDS | 35.0% |
| ! | CATCACTCTGTATTTTCGAA+TGG | - | chr3.1:22861802-22861821 | None:intergenic | 35.0% |
| ! | CGTAGCATCTTTTCCTTTTA+GGG | - | chr3.1:22860264-22860283 | None:intergenic | 35.0% |
| ! | CTGATGATTTTACCTGAGTA+AGG | - | chr3.1:22862833-22862852 | None:intergenic | 35.0% |
| ! | GGGTTTGAAATAAAGCTTTG+CGG | - | chr3.1:22860078-22860097 | None:intergenic | 35.0% |
| ! | TACCAGACAGTGTTTGAAAT+TGG | - | chr3.1:22862284-22862303 | None:intergenic | 35.0% |
| ! | TCGTAGCATCTTTTCCTTTT+AGG | - | chr3.1:22860265-22860284 | None:intergenic | 35.0% |
| ! | TGACAATCTGAGACACTAAT+TGG | + | chr3.1:22861079-22861098 | MS.gene92714:intron | 35.0% |
| ! | TGAGGTAGGACTTTTCTTAT+AGG | - | chr3.1:22863918-22863937 | None:intergenic | 35.0% |
| ! | TGGGCTAGATCTTGATTTAT+TGG | + | chr3.1:22863177-22863196 | MS.gene92714:CDS | 35.0% |
| ! | TTTTCGTGACTGATGTATTG+TGG | + | chr3.1:22862238-22862257 | MS.gene92714:intron | 35.0% |
| !! | AAGATCTTTTTGGGGAAAGA+TGG | + | chr3.1:22862792-22862811 | MS.gene92714:CDS | 35.0% |
| !! | AGACTTTAGAGTGTCAATTG+TGG | + | chr3.1:22860429-22860448 | MS.gene92714:intron | 35.0% |
| !! | AGATCTTTTTGGGGAAAGAT+GGG | + | chr3.1:22862793-22862812 | MS.gene92714:CDS | 35.0% |
| !! | AGTAATGACAAGCACTGAAA+AGG | - | chr3.1:22862662-22862681 | None:intergenic | 35.0% |
| !! | GATGTGTAGTTTGTTTGGAT+TGG | + | chr3.1:22862094-22862113 | MS.gene92714:intron | 35.0% |
| !! | GCAAAGCTTTATTTCAAACC+CGG | + | chr3.1:22860077-22860096 | MS.gene92714:intron | 35.0% |
| !! | TAGTTTGTTTGGATTGGCTT+CGG | + | chr3.1:22862100-22862119 | MS.gene92714:intron | 35.0% |
| !!! | TTCTTTGTTTTTGGGGATTC+TGG | - | chr3.1:22862419-22862438 | None:intergenic | 35.0% |
| AATAGCTAGGCATCAAGTAC+TGG | + | chr3.1:22862021-22862040 | MS.gene92714:intron | 40.0% | |
| AATCATACTCACCCGTTTAC+TGG | - | chr3.1:22860967-22860986 | None:intergenic | 40.0% | |
| ACTCAACTCCACAAACTGAT+TGG | - | chr3.1:22860596-22860615 | None:intergenic | 40.0% | |
| ACTGTATACACGAAACATCC+TGG | + | chr3.1:22862707-22862726 | MS.gene92714:CDS | 40.0% | |
| AGAATAAGTACCTACTTGCC+GGG | - | chr3.1:22860098-22860117 | None:intergenic | 40.0% | |
| AGACCAATTCTTGATGCTAG+AGG | + | chr3.1:22859219-22859238 | MS.gene92714:CDS | 40.0% | |
| AGCACACATCAAGAATGTGT+TGG | - | chr3.1:22863726-22863745 | None:intergenic | 40.0% | |
| AGCTTCAGCTTCTTTAGTTG+AGG | - | chr3.1:22863936-22863955 | None:intergenic | 40.0% | |
| AGTACTTGATGCCTAGCTAT+TGG | - | chr3.1:22862022-22862041 | None:intergenic | 40.0% | |
| AGTTGCATTGCAGTTGTTGT+AGG | + | chr3.1:22862069-22862088 | MS.gene92714:intron | 40.0% | |
| ATAGCTAGGCATCAAGTACT+GGG | + | chr3.1:22862022-22862041 | MS.gene92714:intron | 40.0% | |
| ATCATACTCACCCGTTTACT+GGG | - | chr3.1:22860966-22860985 | None:intergenic | 40.0% | |
| CAACACTTTGTAGTTAGCAC+CGG | - | chr3.1:22862309-22862328 | None:intergenic | 40.0% | |
| CAACTAAAGAAGCTGAAGCT+TGG | + | chr3.1:22863936-22863955 | MS.gene92714:CDS | 40.0% | |
| CAGAATAAGTACCTACTTGC+CGG | - | chr3.1:22860099-22860118 | None:intergenic | 40.0% | |
| CAGTATATTAAGCTGGGAGT+TGG | + | chr3.1:22859185-22859204 | MS.gene92714:CDS | 40.0% | |
| CCAAGATGAGTTAGATTCTG+AGG | + | chr3.1:22864003-22864022 | MS.gene92714:CDS | 40.0% | |
| CCTCAGAATCTAACTCATCT+TGG | - | chr3.1:22864006-22864025 | None:intergenic | 40.0% | |
| CGCTAATAAAGCAAACACAC+TGG | + | chr3.1:22862189-22862208 | MS.gene92714:intron | 40.0% | |
| CTAACTCATCTTGGATTGCT+AGG | - | chr3.1:22863997-22864016 | None:intergenic | 40.0% | |
| CTCCAATTTCAAACACTGTC+TGG | + | chr3.1:22862279-22862298 | MS.gene92714:intron | 40.0% | |
| CTTTCCCCAAAAAGATCTTC+TGG | - | chr3.1:22862791-22862810 | None:intergenic | 40.0% | |
| GGTTGCGGTCCTTAATATTA+CGG | + | chr3.1:22859955-22859974 | MS.gene92714:intron | 40.0% | |
| GGTTTCCTTGCCAATAGAAA+TGG | + | chr3.1:22861038-22861057 | MS.gene92714:intron | 40.0% | |
| GTCTAATGGTAAAAGAGGCT+TGG | - | chr3.1:22862747-22862766 | None:intergenic | 40.0% | |
| TAAGAGCTCTTCCCAGTAAA+CGG | + | chr3.1:22860952-22860971 | MS.gene92714:CDS | 40.0% | |
| TAGCCAATAAAATCTCAGCC+TGG | + | chr3.1:22861632-22861651 | MS.gene92714:intron | 40.0% | |
| TCAGCTTCTTTAGTTGAGGT+AGG | - | chr3.1:22863932-22863951 | None:intergenic | 40.0% | |
| TCAGCTTTCCAATCAGTTTG+TGG | + | chr3.1:22860585-22860604 | MS.gene92714:intron | 40.0% | |
| TCCCAGCTTAATATACTGTC+AGG | - | chr3.1:22859183-22859202 | None:intergenic | 40.0% | |
| TCTAACCTGACTCTTTCAGT+TGG | + | chr3.1:22863866-22863885 | MS.gene92714:CDS | 40.0% | |
| TCTAGCATCAAGAATTGGTC+TGG | - | chr3.1:22859220-22859239 | None:intergenic | 40.0% | |
| TCTGGAAGTTTCGTTGCAAA+AGG | - | chr3.1:22862773-22862792 | None:intergenic | 40.0% | |
| TTATTTCAAACCCGGCAAGT+AGG | + | chr3.1:22860085-22860104 | MS.gene92714:intron | 40.0% | |
| TTCAAAAGCTGATGTCAGGA+AGG | - | chr3.1:22862523-22862542 | None:intergenic | 40.0% | |
| ! | ACAAAAGCATGTAAGGAGCT+TGG | + | chr3.1:22860927-22860946 | MS.gene92714:CDS | 40.0% |
| ! | ACTGTCGCAGCTTTTATGAA+TGG | + | chr3.1:22863806-22863825 | MS.gene92714:intron | 40.0% |
| ! | GTGTATTTCTGTTGCGTTGT+AGG | + | chr3.1:22860883-22860902 | MS.gene92714:intron | 40.0% |
| ! | GTTGCCCTTTTAAACTGTCT+TGG | - | chr3.1:22859725-22859744 | None:intergenic | 40.0% |
| ! | TGAAAAGGCATGTTCATGTG+TGG | + | chr3.1:22860705-22860724 | MS.gene92714:intron | 40.0% |
| ! | TGACTCTACTTCCTTTTCAG+AGG | + | chr3.1:22862602-22862621 | MS.gene92714:intron | 40.0% |
| !! | AGGTCGATGTGTAGTTTGTT+TGG | + | chr3.1:22862089-22862108 | MS.gene92714:intron | 40.0% |
| !! | TGGTGTCTTTAAGACTTGCA+GGG | + | chr3.1:22860725-22860744 | MS.gene92714:intron | 40.0% |
| !! | TTACGGTGTTACTAGCTGTT+TGG | + | chr3.1:22859438-22859457 | MS.gene92714:intron | 40.0% |
| !!! | GTGGTTTTAACTAGTGGTTG+CGG | + | chr3.1:22859940-22859959 | MS.gene92714:intron | 40.0% |
| !!! | TTGGATCCCTTTTGAAATCC+AGG | - | chr3.1:22862728-22862747 | None:intergenic | 40.0% |
| AAGAGCTCTTCCCAGTAAAC+GGG | + | chr3.1:22860953-22860972 | MS.gene92714:CDS | 45.0% | |
| AAGATGCAACAGCCAATCCT+GGG | - | chr3.1:22863231-22863250 | None:intergenic | 45.0% | |
| AAGCTTTGCGGCCAAAATCT+AGG | - | chr3.1:22860066-22860085 | None:intergenic | 45.0% | |
| ACGTATGGTGTCCTATGGTA+AGG | - | chr3.1:22860463-22860482 | None:intergenic | 45.0% | |
| AGACTTGCAGGGATTTCACA+TGG | + | chr3.1:22860736-22860755 | MS.gene92714:intron | 45.0% | |
| AGATGACGTATGGTGTCCTA+TGG | - | chr3.1:22860468-22860487 | None:intergenic | 45.0% | |
| ATACTGTCAGGATCAGCTTC+TGG | - | chr3.1:22859171-22859190 | None:intergenic | 45.0% | |
| CAATAAAATCTCAGCCTGGC+CGG | + | chr3.1:22861636-22861655 | MS.gene92714:intron | 45.0% | |
| CTGCAATGCAACCACAATTG+AGG | - | chr3.1:22860010-22860029 | None:intergenic | 45.0% | |
| GAAGCAGCTAAGAAAGCTTC+TGG | + | chr3.1:22863959-22863978 | MS.gene92714:CDS | 45.0% | |
| GACAGTTTAAAAGGGCAACC+CGG | + | chr3.1:22859726-22859745 | MS.gene92714:intron | 45.0% | |
| GACTGATGAAGCCTCAATTG+TGG | + | chr3.1:22859996-22860015 | MS.gene92714:intron | 45.0% | |
| GACTTGCAGGGATTTCACAT+GGG | + | chr3.1:22860737-22860756 | MS.gene92714:intron | 45.0% | |
| GGAGCTCTGTTCCATTGAAA+CGG | + | chr3.1:22863832-22863851 | MS.gene92714:CDS | 45.0% | |
| TACTGTCAGGATCAGCTTCT+GGG | - | chr3.1:22859170-22859189 | None:intergenic | 45.0% | |
| TATGATTTCTGACTCTGCCG+TGG | + | chr3.1:22860980-22860999 | MS.gene92714:intron | 45.0% | |
| TCAAACACTGTCTGGTAGAC+CGG | + | chr3.1:22862287-22862306 | MS.gene92714:intron | 45.0% | |
| TCAGCCTCAGAGGAAAGATT+TGG | + | chr3.1:22863145-22863164 | MS.gene92714:CDS | 45.0% | |
| TCAGTTTGTGGAGTTGAGTC+AGG | + | chr3.1:22860597-22860616 | MS.gene92714:intron | 45.0% | |
| TTGTGGCTGATCACATTACG+TGG | + | chr3.1:22862255-22862274 | MS.gene92714:intron | 45.0% | |
| ! | CGCAGCTTTTATGAATGGAC+TGG | + | chr3.1:22863811-22863830 | MS.gene92714:intron | 45.0% |
| ! | CGGTGCTAACTACAAAGTGT+TGG | + | chr3.1:22862307-22862326 | MS.gene92714:intron | 45.0% |
| ! | GCCCCTAAGTTTTTGATCCA+AGG | - | chr3.1:22861142-22861161 | None:intergenic | 45.0% |
| ! | TGGTGCTAAGTCCTTACCAT+AGG | + | chr3.1:22860449-22860468 | MS.gene92714:intron | 45.0% |
| ! | TTATGCCGTGGCCTAGATTT+TGG | + | chr3.1:22860052-22860071 | MS.gene92714:intron | 45.0% |
| !! | AAATCTTTCCTCTGAGGCTG+AGG | - | chr3.1:22863146-22863165 | None:intergenic | 45.0% |
| !! | AAGCGAATGTTTCTAGGCAC+AGG | - | chr3.1:22859378-22859397 | None:intergenic | 45.0% |
| !! | CTGAGGATTGTATTGGCTTC+TGG | + | chr3.1:22864020-22864039 | MS.gene92714:CDS | 45.0% |
| !! | GTGGTGTCTTTAAGACTTGC+AGG | + | chr3.1:22860724-22860743 | MS.gene92714:intron | 45.0% |
| !! | GTTTGGATTGGCTTCGGAAA+AGG | + | chr3.1:22862106-22862125 | MS.gene92714:intron | 45.0% |
| !!! | GCAGTCGTGGTTTTAACTAG+TGG | + | chr3.1:22859934-22859953 | MS.gene92714:intron | 45.0% |
| AACAGCCAATCCTGGGATCA+AGG | - | chr3.1:22863224-22863243 | None:intergenic | 50.0% | |
| ACTAAAGCTCCCGCATATGC+AGG | + | chr3.1:22859752-22859771 | MS.gene92714:intron | 50.0% | |
| AGCTGCGACAGTAAATGGTG+AGG | - | chr3.1:22863798-22863817 | None:intergenic | 50.0% | |
| CTAAAGCTCCCGCATATGCA+GGG | + | chr3.1:22859753-22859772 | MS.gene92714:intron | 50.0% | |
| GAAGACCTTGATCCCAGGAT+TGG | + | chr3.1:22863216-22863235 | MS.gene92714:CDS | 50.0% | |
| GAAGATGCAACAGCCAATCC+TGG | - | chr3.1:22863232-22863251 | None:intergenic | 50.0% | |
| GCAGCTAAGAAAGCTTCTGG+AGG | + | chr3.1:22863962-22863981 | MS.gene92714:CDS | 50.0% | |
| GCTGCGACAGTAAATGGTGA+GGG | - | chr3.1:22863797-22863816 | None:intergenic | 50.0% | |
| GGGGGAAAATGCCAATAGCT+AGG | + | chr3.1:22862008-22862027 | MS.gene92714:intron | 50.0% | |
| GTAACGTGCATGCCAAACCT+TGG | + | chr3.1:22861122-22861141 | MS.gene92714:intron | 50.0% | |
| TACTTACTCACTGGCAGTCG+TGG | + | chr3.1:22859921-22859940 | MS.gene92714:intron | 50.0% | |
| ! | ACACCAGTGCACCTCTGAAA+AGG | - | chr3.1:22862616-22862635 | None:intergenic | 50.0% |
| ! | CGGCCAGGCTGAGATTTTAT+TGG | - | chr3.1:22861638-22861657 | None:intergenic | 50.0% |
| !! | CTTCCTTTTCAGAGGTGCAC+TGG | + | chr3.1:22862610-22862629 | MS.gene92714:intron | 50.0% |
| ACCCACCACCCCATGATTTC+CGG | - | chr3.1:22861658-22861677 | None:intergenic | 55.0% | |
| CATATGCAGGGTTCGGGAAG+GGG | + | chr3.1:22859765-22859784 | MS.gene92714:intron | 55.0% | |
| CTTCCCGAACCCTGCATATG+CGG | - | chr3.1:22859765-22859784 | None:intergenic | 55.0% | |
| GACGAGAAGACCTTGATCCC+AGG | + | chr3.1:22863211-22863230 | MS.gene92714:CDS | 55.0% | |
| GCATATGCAGGGTTCGGGAA+GGG | + | chr3.1:22859764-22859783 | MS.gene92714:intron | 55.0% | |
| GCGTGCAGTGTCCGTTTCAA+TGG | - | chr3.1:22863846-22863865 | None:intergenic | 55.0% | |
| TCAGCCTGGCCGGAAATCAT+GGG | + | chr3.1:22861646-22861665 | MS.gene92714:intron | 55.0% | |
| TGCGGCCAAAATCTAGGCCA+CGG | - | chr3.1:22860060-22860079 | None:intergenic | 55.0% | |
| TTCCCGAACCCTGCATATGC+GGG | - | chr3.1:22859764-22859783 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr3.1:22859748-22859767 | None:intergenic | 55.0% |
| !!! | GTTTTGGCGCTGACGTGCTA+TGG | + | chr3.1:22862153-22862172 | MS.gene92714:intron | 55.0% |
| CAGCCTGGCCGGAAATCATG+GGG | + | chr3.1:22861647-22861666 | MS.gene92714:intron | 60.0% | |
| CGCATATGCAGGGTTCGGGA+AGG | + | chr3.1:22859763-22859782 | MS.gene92714:intron | 60.0% | |
| CTCAGCCTGGCCGGAAATCA+TGG | + | chr3.1:22861645-22861664 | MS.gene92714:intron | 60.0% | |
| CTCCCGCATATGCAGGGTTC+GGG | + | chr3.1:22859759-22859778 | MS.gene92714:intron | 60.0% | |
| GCCGGAAATCATGGGGTGGT+GGG | + | chr3.1:22861654-22861673 | MS.gene92714:intron | 60.0% | |
| GCTCCCGCATATGCAGGGTT+CGG | + | chr3.1:22859758-22859777 | MS.gene92714:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr3.1:22859747-22859766 | None:intergenic | 60.0% |
| AGAGGAGGCCTCAGCCTCAG+AGG | + | chr3.1:22863135-22863154 | MS.gene92714:CDS | 65.0% | |
| CCACCCCATGATTTCCGGCC+AGG | - | chr3.1:22861653-22861672 | None:intergenic | 65.0% | |
| CCTGGCCGGAAATCATGGGG+TGG | + | chr3.1:22861650-22861669 | MS.gene92714:intron | 65.0% | |
| GGCCGGAAATCATGGGGTGG+TGG | + | chr3.1:22861653-22861672 | MS.gene92714:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 22859129 | 22864075 | 22859129 | ID=MS.gene92714 |
| chr3.1 | mRNA | 22859129 | 22864075 | 22859129 | ID=MS.gene92714.t1;Parent=MS.gene92714 |
| chr3.1 | exon | 22859129 | 22859403 | 22859129 | ID=MS.gene92714.t1.exon1;Parent=MS.gene92714.t1 |
| chr3.1 | CDS | 22859129 | 22859403 | 22859129 | ID=cds.MS.gene92714.t1;Parent=MS.gene92714.t1 |
| chr3.1 | exon | 22860905 | 22860974 | 22860905 | ID=MS.gene92714.t1.exon2;Parent=MS.gene92714.t1 |
| chr3.1 | CDS | 22860905 | 22860974 | 22860905 | ID=cds.MS.gene92714.t1;Parent=MS.gene92714.t1 |
| chr3.1 | exon | 22862668 | 22862839 | 22862668 | ID=MS.gene92714.t1.exon3;Parent=MS.gene92714.t1 |
| chr3.1 | CDS | 22862668 | 22862839 | 22862668 | ID=cds.MS.gene92714.t1;Parent=MS.gene92714.t1 |
| chr3.1 | exon | 22863128 | 22863271 | 22863128 | ID=MS.gene92714.t1.exon4;Parent=MS.gene92714.t1 |
| chr3.1 | CDS | 22863128 | 22863271 | 22863128 | ID=cds.MS.gene92714.t1;Parent=MS.gene92714.t1 |
| chr3.1 | exon | 22863816 | 22864075 | 22863816 | ID=MS.gene92714.t1.exon5;Parent=MS.gene92714.t1 |
| chr3.1 | CDS | 22863816 | 22864075 | 22863816 | ID=cds.MS.gene92714.t1;Parent=MS.gene92714.t1 |
| Gene Sequence |
| Protein sequence |
