AlfalfaGEDB | MS.gene33004

M. sativa cultivar XinJiangDaYe / MS.gene33004

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0006355 GO:0008150 GO:0008270 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043167 GO:0043169 GO:0043565 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00320.30

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33004.t1	XP_003588994.1	94.5	217	12	0	10	226	89	305	4.90E-76	294.3

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33004.t1	Q9SZI6	72.5	51	12	1	97	145	186	236	2.3e-13	77.4

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33004.t1	G7I9Y4	94.5	217	12	0	10	226	89	305	3.5e-76	294.3

TFs/TRs:

Gene ID	Type	Classification
MS.gene33004.t1	TF	C2C2-GATA

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049137	MS.gene33004	0.846708	1.83E-59	-1.69E-46
MS.gene049171	MS.gene33004	0.823793	1.14E-53	-1.69E-46
MS.gene049222	MS.gene33004	0.827607	1.43E-54	-1.69E-46
MS.gene049265	MS.gene33004	-0.800948	1.13E-48	-1.69E-46
MS.gene049285	MS.gene33004	0.821043	4.98E-53	-1.69E-46
MS.gene049369	MS.gene33004	0.811753	5.98E-51	-1.69E-46
MS.gene049427	MS.gene33004	0.810559	1.09E-50	-1.69E-46
MS.gene049609	MS.gene33004	0.843443	1.40E-58	-1.69E-46
MS.gene049633	MS.gene33004	0.809621	1.73E-50	-1.69E-46
MS.gene049805	MS.gene33004	0.84725	1.30E-59	-1.69E-46
MS.gene050170	MS.gene33004	0.800709	1.27E-48	-1.69E-46
MS.gene050323	MS.gene33004	0.809337	1.99E-50	-1.69E-46
MS.gene050538	MS.gene33004	0.823157	1.61E-53	-1.69E-46
MS.gene050593	MS.gene33004	0.819225	1.30E-52	-1.69E-46
MS.gene050670	MS.gene33004	0.839657	1.39E-57	-1.69E-46
MS.gene050747	MS.gene33004	0.847663	1.00E-59	-1.69E-46
MS.gene050772	MS.gene33004	0.856855	2.43E-62	-1.69E-46
MS.gene050809	MS.gene33004	-0.81156	6.59E-51	-1.69E-46
MS.gene05080	MS.gene33004	0.826512	2.60E-54	-1.69E-46
MS.gene050812	MS.gene33004	0.830904	2.26E-55	-1.69E-46
MS.gene05081	MS.gene33004	0.841717	4.01E-58	-1.69E-46
MS.gene050868	MS.gene33004	0.818697	1.71E-52	-1.69E-46
MS.gene050871	MS.gene33004	0.817498	3.20E-52	-1.69E-46
MS.gene050950	MS.gene33004	0.848688	5.22E-60	-1.69E-46
MS.gene05105	MS.gene33004	0.843732	1.17E-58	-1.69E-46
MS.gene051387	MS.gene33004	0.816675	4.89E-52	-1.69E-46
MS.gene051666	MS.gene33004	0.863855	1.85E-64	-1.69E-46
MS.gene051694	MS.gene33004	0.814888	1.23E-51	-1.69E-46
MS.gene051734	MS.gene33004	0.812171	4.85E-51	-1.69E-46
MS.gene051838	MS.gene33004	0.839181	1.85E-57	-1.69E-46
MS.gene051858	MS.gene33004	0.852883	3.44E-61	-1.69E-46
MS.gene051874	MS.gene33004	0.82852	8.59E-55	-1.69E-46
MS.gene052310	MS.gene33004	0.823631	1.25E-53	-1.69E-46
MS.gene052322	MS.gene33004	0.834518	2.86E-56	-1.69E-46
MS.gene052346	MS.gene33004	0.814213	1.73E-51	-1.69E-46
MS.gene052379	MS.gene33004	0.805462	1.32E-49	-1.69E-46
MS.gene05240	MS.gene33004	-0.829477	5.04E-55	-1.69E-46
MS.gene052414	MS.gene33004	0.800162	1.64E-48	-1.69E-46
MS.gene052421	MS.gene33004	0.841075	5.92E-58	-1.69E-46
MS.gene052469	MS.gene33004	0.801628	8.23E-49	-1.69E-46
MS.gene052481	MS.gene33004	0.825769	3.91E-54	-1.69E-46
MS.gene052484	MS.gene33004	0.820351	7.18E-53	-1.69E-46
MS.gene052485	MS.gene33004	0.822038	2.93E-53	-1.69E-46
MS.gene052501	MS.gene33004	0.804844	1.78E-49	-1.69E-46
MS.gene052506	MS.gene33004	0.817349	3.45E-52	-1.69E-46
MS.gene052615	MS.gene33004	0.839919	1.19E-57	-1.69E-46
MS.gene052822	MS.gene33004	0.821195	4.59E-53	-1.69E-46
MS.gene052870	MS.gene33004	0.855037	8.26E-62	-1.69E-46
MS.gene052872	MS.gene33004	0.856872	2.40E-62	-1.69E-46
MS.gene052982	MS.gene33004	0.807131	5.87E-50	-1.69E-46
MS.gene053009	MS.gene33004	0.80446	2.14E-49	-1.69E-46
MS.gene053107	MS.gene33004	0.808298	3.32E-50	-1.69E-46
MS.gene053203	MS.gene33004	0.803134	4.03E-49	-1.69E-46
MS.gene053207	MS.gene33004	0.803963	2.71E-49	-1.69E-46
MS.gene053213	MS.gene33004	0.820258	7.54E-53	-1.69E-46
MS.gene053286	MS.gene33004	0.809197	2.13E-50	-1.69E-46
MS.gene053322	MS.gene33004	0.807217	5.63E-50	-1.69E-46
MS.gene053449	MS.gene33004	0.812871	3.41E-51	-1.69E-46
MS.gene053479	MS.gene33004	0.824201	9.18E-54	-1.69E-46
MS.gene053574	MS.gene33004	0.835422	1.69E-56	-1.69E-46
MS.gene053579	MS.gene33004	0.811427	7.04E-51	-1.69E-46
MS.gene053632	MS.gene33004	0.809146	2.19E-50	-1.69E-46
MS.gene053824	MS.gene33004	0.877659	5.26E-69	-1.69E-46
MS.gene053916	MS.gene33004	0.863599	2.22E-64	-1.69E-46
MS.gene054408	MS.gene33004	0.858003	1.11E-62	-1.69E-46
MS.gene054642	MS.gene33004	0.821107	4.81E-53	-1.69E-46
MS.gene054884	MS.gene33004	-0.810994	8.74E-51	-1.69E-46
MS.gene05494	MS.gene33004	0.862755	4.05E-64	-1.69E-46
MS.gene05505	MS.gene33004	0.868885	4.68E-66	-1.69E-46
MS.gene055206	MS.gene33004	0.848199	7.14E-60	-1.69E-46
MS.gene055224	MS.gene33004	0.864005	1.66E-64	-1.69E-46
MS.gene055289	MS.gene33004	0.845515	3.87E-59	-1.69E-46
MS.gene055502	MS.gene33004	0.813301	2.74E-51	-1.69E-46
MS.gene055536	MS.gene33004	-0.817657	2.94E-52	-1.69E-46
MS.gene055577	MS.gene33004	0.836599	8.51E-57	-1.69E-46
MS.gene055722	MS.gene33004	0.826039	3.38E-54	-1.69E-46
MS.gene055741	MS.gene33004	0.800943	1.14E-48	-1.69E-46
MS.gene055748	MS.gene33004	0.806484	8.04E-50	-1.69E-46
MS.gene055750	MS.gene33004	0.813093	3.05E-51	-1.69E-46
MS.gene05589	MS.gene33004	0.805332	1.41E-49	-1.69E-46
MS.gene05592	MS.gene33004	0.832207	1.08E-55	-1.69E-46
MS.gene055941	MS.gene33004	0.827487	1.52E-54	-1.69E-46
MS.gene056422	MS.gene33004	0.802011	6.87E-49	-1.69E-46
MS.gene056504	MS.gene33004	0.801838	7.46E-49	-1.69E-46
MS.gene056511	MS.gene33004	0.826281	2.96E-54	-1.69E-46
MS.gene056657	MS.gene33004	0.800068	1.71E-48	-1.69E-46
MS.gene056796	MS.gene33004	0.803706	3.07E-49	-1.69E-46
MS.gene056897	MS.gene33004	0.827844	1.25E-54	-1.69E-46
MS.gene057011	MS.gene33004	0.813275	2.78E-51	-1.69E-46
MS.gene057019	MS.gene33004	0.806922	6.50E-50	-1.69E-46
MS.gene057076	MS.gene33004	0.81431	1.64E-51	-1.69E-46
MS.gene057124	MS.gene33004	0.83151	1.60E-55	-1.69E-46
MS.gene057129	MS.gene33004	0.819324	1.23E-52	-1.69E-46
MS.gene057331	MS.gene33004	0.816066	6.70E-52	-1.69E-46
MS.gene057416	MS.gene33004	0.82833	9.55E-55	-1.69E-46
MS.gene057658	MS.gene33004	0.81152	6.72E-51	-1.69E-46
MS.gene057926	MS.gene33004	0.804588	2.01E-49	-1.69E-46
MS.gene058006	MS.gene33004	0.825761	3.93E-54	-1.69E-46
MS.gene058130	MS.gene33004	0.862684	4.26E-64	-1.69E-46
MS.gene058323	MS.gene33004	0.837699	4.46E-57	-1.69E-46
MS.gene058338	MS.gene33004	0.820997	5.10E-53	-1.69E-46
MS.gene058376	MS.gene33004	0.831481	1.63E-55	-1.69E-46
MS.gene05837	MS.gene33004	0.840903	6.57E-58	-1.69E-46
MS.gene058419	MS.gene33004	0.825803	3.84E-54	-1.69E-46
MS.gene058544	MS.gene33004	0.801856	7.39E-49	-1.69E-46
MS.gene058723	MS.gene33004	0.814566	1.44E-51	-1.69E-46
MS.gene058838	MS.gene33004	0.850519	1.61E-60	-1.69E-46
MS.gene059023	MS.gene33004	0.85941	4.22E-63	-1.69E-46
MS.gene05934	MS.gene33004	0.841593	4.33E-58	-1.69E-46
MS.gene059536	MS.gene33004	0.820395	7.01E-53	-1.69E-46
MS.gene059677	MS.gene33004	0.806948	6.42E-50	-1.69E-46
MS.gene059688	MS.gene33004	0.819523	1.11E-52	-1.69E-46
MS.gene059695	MS.gene33004	0.806015	1.01E-49	-1.69E-46
MS.gene059718	MS.gene33004	0.824279	8.80E-54	-1.69E-46
MS.gene059902	MS.gene33004	0.845447	4.04E-59	-1.69E-46
MS.gene059960	MS.gene33004	0.815766	7.81E-52	-1.69E-46
MS.gene060193	MS.gene33004	0.808873	2.50E-50	-1.69E-46
MS.gene060762	MS.gene33004	0.82033	7.26E-53	-1.69E-46
MS.gene06077	MS.gene33004	0.81147	6.89E-51	-1.69E-46
MS.gene060804	MS.gene33004	0.817696	2.88E-52	-1.69E-46
MS.gene060818	MS.gene33004	0.819238	1.29E-52	-1.69E-46
MS.gene060835	MS.gene33004	0.82148	3.95E-53	-1.69E-46
MS.gene060837	MS.gene33004	0.834848	2.36E-56	-1.69E-46
MS.gene06092	MS.gene33004	0.852744	3.78E-61	-1.69E-46
MS.gene060982	MS.gene33004	0.806049	9.93E-50	-1.69E-46
MS.gene061041	MS.gene33004	0.826354	2.84E-54	-1.69E-46
MS.gene061150	MS.gene33004	0.832761	7.86E-56	-1.69E-46
MS.gene061154	MS.gene33004	0.829664	4.54E-55	-1.69E-46
MS.gene061200	MS.gene33004	0.809078	2.26E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33004.t1	MTR_1g016170	95.575	226	10	0	1	226	80	305	1.40e-137	388
MS.gene33004.t1	MTR_3g050550	82.979	94	16	0	18	111	1	94	7.87e-49	155
MS.gene33004.t1	MTR_3g050610	76.667	120	23	2	4	121	31	147	3.41e-44	145
MS.gene33004.t1	MTR_4g126350	45.872	109	38	5	29	137	128	215	6.11e-18	81.3
MS.gene33004.t1	MTR_2g038720	37.850	214	80	8	29	224	110	288	1.34e-16	77.0
MS.gene33004.t1	MTR_4g121110	62.500	48	18	0	105	152	27	74	4.94e-16	72.8
MS.gene33004.t1	MTR_7g112330	69.444	36	11	0	108	143	22	57	4.26e-13	64.3
MS.gene33004.t1	MTR_5g020230	57.692	52	19	1	96	144	107	158	2.73e-12	64.3
MS.gene33004.t1	MTR_1g094930	56.098	41	18	0	103	143	142	182	3.03e-11	61.6
MS.gene33004.t1	MTR_1g094930	56.098	41	18	0	103	143	237	277	4.80e-11	61.6
MS.gene33004.t1	MTR_8g077510	63.158	38	14	0	107	144	124	161	6.05e-11	60.8
MS.gene33004.t1	MTR_1g116010	33.721	86	46	1	58	143	125	199	7.89e-11	60.5

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene33004.t1	AT5G56860	41.985	131	49	6	29	141	142	263	7.32e-20	87.4
MS.gene33004.t1	AT5G49300	66.667	45	15	0	104	148	32	76	2.62e-17	75.9
MS.gene33004.t1	AT4G26150	43.220	118	26	4	29	139	147	230	2.02e-16	77.4
MS.gene33004.t1	AT5G26930	66.667	42	14	0	104	145	22	63	3.70e-16	72.4
MS.gene33004.t1	AT3G06740	66.667	42	14	0	105	146	38	79	1.02e-14	69.3
MS.gene33004.t1	AT4G16141	68.293	41	13	0	105	145	34	74	1.69e-14	69.7
MS.gene33004.t1	AT3G16870	57.143	56	20	1	105	160	39	90	3.16e-14	68.9
MS.gene33004.t1	AT4G36620	58.333	48	20	0	104	151	71	118	1.76e-12	64.7
MS.gene33004.t1	AT2G18380	68.293	41	12	1	108	147	92	132	3.62e-12	63.5
MS.gene33004.t1	AT5G25830	55.556	45	20	0	99	143	210	254	1.53e-11	63.2
MS.gene33004.t1	AT3G50870	33.058	121	68	4	107	224	151	261	2.49e-11	62.4
MS.gene33004.t1	AT1G08010	57.778	45	18	1	99	143	212	255	5.11e-11	61.6
MS.gene33004.t1	AT1G08010	57.778	45	18	1	99	143	212	255	5.11e-11	61.6
MS.gene33004.t1	AT1G08010	57.778	45	18	1	99	143	212	255	5.11e-11	61.6
MS.gene33004.t1	AT2G45050	46.000	50	27	0	94	143	165	214	7.79e-11	60.8

Find 53 sgRNAs with CRISPR-Local

Find 82 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTGTTGTTTGGTCTCATTAT+TGG	0.223553	1.1:-5994558	None:intergenic
GGACTAGTACCATAATTAAT+AGG	0.299944	1.1:-5994633	None:intergenic
ATGATGAAACCTATTAATTA+TGG	0.328213	1.1:+5994624	MS.gene33004:CDS
TTGTTACCGCTGTTACTACT+AGG	0.336848	1.1:-5994690	None:intergenic
TGTTACTACTAGGGCTTGTT+TGG	0.337618	1.1:-5994680	None:intergenic
CACTCCTCCATAGTGGGGTA+TGG	0.338618	1.1:-5994746	None:intergenic
GTCCAAGAAATCAAAATATA+AGG	0.340331	1.1:+5994652	MS.gene33004:CDS
TTTGCAATGCTTGTGGAATC+AGG	0.357272	1.1:+5995368	MS.gene33004:CDS
TCATCATAATCATAATCTAA+TGG	0.373491	1.1:-5995580	None:intergenic
TAATTAATAGGTTTCATCAT+TGG	0.391140	1.1:-5994621	None:intergenic
CACAAATTTATCATCATCCT+TGG	0.395360	1.1:+5994425	MS.gene33004:CDS
AGCAACGGCGGCACGACTTC+TGG	0.401059	1.1:+5995606	MS.gene33004:CDS
GTGGCTGCAATATTGTTGTT+TGG	0.421269	1.1:-5994570	None:intergenic
GGCTGAAGCTGCCAATGGTT+TGG	0.422143	1.1:+5995414	MS.gene33004:CDS
CGAATTACCTTTGGACCCAT+AGG	0.444966	1.1:-5994771	None:intergenic
ACTATGGAGGAGTGGCCCTA+TGG	0.450797	1.1:+5994755	MS.gene33004:CDS
TGAGTCACGGGTCTGAGAAA+TGG	0.451328	1.1:+5994472	MS.gene33004:CDS
CTTCTGGTGGATATATCTTC+TGG	0.451597	1.1:+5995622	MS.gene33004:CDS
ACAGCGGTAACAACACCGTT+AGG	0.456940	1.1:+5994700	MS.gene33004:CDS
CTATGGAGGAGTGGCCCTAT+GGG	0.464867	1.1:+5994756	MS.gene33004:CDS
TTTATCATCATCCTTGGAGC+TGG	0.479939	1.1:+5994431	MS.gene33004:CDS
CTTGATAGCTTTGTCAGTAG+TGG	0.482210	1.1:-5994589	None:intergenic
ACTCCTCCATAGTGGGGTAT+GGG	0.482841	1.1:-5994745	None:intergenic
GTACATCCCATACCCCACTA+TGG	0.488777	1.1:+5994739	MS.gene33004:CDS
TTCTTAGTCTTGAATTGTGT+AGG	0.495944	1.1:-5995475	None:intergenic
GCTGCTATCTTCCAGCTCCA+AGG	0.513483	1.1:-5994442	None:intergenic
TGGTCTCATTATTGGAGTTG+TGG	0.515285	1.1:-5994550	None:intergenic
TCAGGCAGAGAAAGGCAAGA+AGG	0.520139	1.1:+5995386	MS.gene33004:CDS
ACAACTTCAACTACTTCTGC+TGG	0.524955	1.1:+5995520	MS.gene33004:CDS
CAGGCAGAGAAAGGCAAGAA+GGG	0.526577	1.1:+5995387	MS.gene33004:CDS
GAATTACCTTTGGACCCATA+GGG	0.528192	1.1:-5994770	None:intergenic
AGGGGATGTAGCCAAACCAT+TGG	0.539225	1.1:-5995425	None:intergenic
CAGTCACTTTGCAATGCTTG+TGG	0.543553	1.1:+5995361	MS.gene33004:intron
CAGCGGTAACAACACCGTTA+GGG	0.546032	1.1:+5994701	MS.gene33004:CDS
ACCATTGGCAGCTTCAGCCA+TGG	0.551217	1.1:-5995410	None:intergenic
TTGTGGAATCAGGCAGAGAA+AGG	0.551715	1.1:+5995378	MS.gene33004:CDS
TAGGGCCACTCCTCCATAGT+GGG	0.558056	1.1:-5994752	None:intergenic
TGTTACCGCTGTTACTACTA+GGG	0.563428	1.1:-5994689	None:intergenic
ATAGGGCCACTCCTCCATAG+TGG	0.566452	1.1:-5994753	None:intergenic
AGAAGTAGTTGAAGTTGTAG+AGG	0.579757	1.1:-5995515	None:intergenic
GAGAAAGGCAAGAAGGGCCA+TGG	0.585866	1.1:+5995393	MS.gene33004:CDS
GAGTGGCCCTATGGGTCCAA+AGG	0.590272	1.1:+5994764	MS.gene33004:CDS
TGATTATGATGAAGCAGCAA+CGG	0.614524	1.1:+5995591	MS.gene33004:CDS
GCCATGGCTGAAGCTGCCAA+TGG	0.619219	1.1:+5995409	MS.gene33004:CDS
AATGGATGTCTTCAAAGATG+AGG	0.632702	1.1:+5994490	MS.gene33004:CDS
AACGGCGGCACGACTTCTGG+TGG	0.640817	1.1:+5995609	MS.gene33004:CDS
ACAATCAGAACAAACCCTAA+CGG	0.645452	1.1:-5994715	None:intergenic
ACAATTCAAGACTAAGAACA+AGG	0.668290	1.1:+5995480	MS.gene33004:CDS
CATACCCCACTATGGAGGAG+TGG	0.671274	1.1:+5994747	MS.gene33004:CDS
CATCCCATACCCCACTATGG+AGG	0.682705	1.1:+5994742	MS.gene33004:CDS
TTATGATGAAGCAGCAACGG+CGG	0.694941	1.1:+5995594	MS.gene33004:CDS
AGGGCCACTCCTCCATAGTG+GGG	0.711722	1.1:-5994751	None:intergenic
ACAAGCCCTAGTAGTAACAG+CGG	0.724459	1.1:+5994684	MS.gene33004:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATCAAATTAAGTTTAATTA+TGG	-	chr1.1:5995289-5995308	None:intergenic	10.0%
!!	ATTAATATTTATTGTTCATA+AGG	+	chr1.1:5994934-5994953	MS.gene33004:intron	10.0%
!!	TAATTAAAAAGATAAAATAG+AGG	-	chr1.1:5995118-5995137	None:intergenic	10.0%
!!	TGATAAAATATTTGTATTAA+AGG	-	chr1.1:5995021-5995040	None:intergenic	10.0%
!!	TTAATATTTATTGTTCATAA+GGG	+	chr1.1:5994935-5994954	MS.gene33004:intron	10.0%
!!!	ATTAATATATTTTTTTTGTG+GGG	-	chr1.1:5994920-5994939	None:intergenic	10.0%
!!!	GATATTAATAATTTTTGAGA+TGG	-	chr1.1:5994895-5994914	None:intergenic	15.0%
!!!	TGTTTTTGTAAGAATTTTTA+TGG	-	chr1.1:5994987-5995006	None:intergenic	15.0%
!!	ATGATGAAACCTATTAATTA+TGG	+	chr1.1:5994624-5994643	MS.gene33004:CDS	20.0%
!!	ATTTGTATTAAAGGAAGTAA+AGG	-	chr1.1:5995012-5995031	None:intergenic	20.0%
!!	TAATTAATAGGTTTCATCAT+TGG	-	chr1.1:5994624-5994643	None:intergenic	20.0%
!!	TCATCATAATCATAATCTAA+TGG	-	chr1.1:5995583-5995602	None:intergenic	20.0%
!!!	CGATAAATGATAAATTTTAG+TGG	-	chr1.1:5994861-5994880	None:intergenic	20.0%
!!!	TACCTTATATTTTGATTTCT+TGG	-	chr1.1:5994657-5994676	None:intergenic	20.0%
!	ACTATTCTTTCGTATTAAAG+TGG	+	chr1.1:5994812-5994831	MS.gene33004:intron	25.0%
!	ATACGAAAGAATAGTGAATA+AGG	-	chr1.1:5994807-5994826	None:intergenic	25.0%
!	CTATTCTTTCGTATTAAAGT+GGG	+	chr1.1:5994813-5994832	MS.gene33004:intron	25.0%
!	GTCCAAGAAATCAAAATATA+AGG	+	chr1.1:5994652-5994671	MS.gene33004:CDS	25.0%
!	TAAAAAGATAAAATAGAGGC+AGG	-	chr1.1:5995114-5995133	None:intergenic	25.0%
!	TAGTTAACATGAAAACATGT+TGG	+	chr1.1:5995336-5995355	MS.gene33004:intron	25.0%
!!!	ATCTTAAGCACTTTAGTTTT+AGG	-	chr1.1:5995448-5995467	None:intergenic	25.0%
!!!	TCTTAAGCACTTTAGTTTTA+GGG	-	chr1.1:5995447-5995466	None:intergenic	25.0%
	AAAGAATAGTGAATAAGGCT+GGG	-	chr1.1:5994802-5994821	None:intergenic	30.0%
	ACAATTCAAGACTAAGAACA+AGG	+	chr1.1:5995480-5995499	MS.gene33004:CDS	30.0%
	CACAAATTTATCATCATCCT+TGG	+	chr1.1:5994425-5994444	MS.gene33004:CDS	30.0%
	TTCATAAGGGATGTCAAATA+TGG	+	chr1.1:5994948-5994967	MS.gene33004:intron	30.0%
!	GGACTAGTACCATAATTAAT+AGG	-	chr1.1:5994636-5994655	None:intergenic	30.0%
!	TTTAGTGGATCATAACAACA+AGG	-	chr1.1:5994846-5994865	None:intergenic	30.0%
!!	TTCTTAGTCTTGAATTGTGT+AGG	-	chr1.1:5995478-5995497	None:intergenic	30.0%
!!	TTGTTGTTTGGTCTCATTAT+TGG	-	chr1.1:5994561-5994580	None:intergenic	30.0%
!!!	CTTAAGCACTTTAGTTTTAG+GGG	-	chr1.1:5995446-5995465	None:intergenic	30.0%
	AATGGATGTCTTCAAAGATG+AGG	+	chr1.1:5994490-5994509	MS.gene33004:CDS	35.0%
	ACAATCAGAACAAACCCTAA+CGG	-	chr1.1:5994718-5994737	None:intergenic	35.0%
	AGAAGTAGTTGAAGTTGTAG+AGG	-	chr1.1:5995518-5995537	None:intergenic	35.0%
	GAAAGAATAGTGAATAAGGC+TGG	-	chr1.1:5994803-5994822	None:intergenic	35.0%
	TGATTATGATGAAGCAGCAA+CGG	+	chr1.1:5995591-5995610	MS.gene33004:CDS	35.0%
	TGGGATTAACGAATTACCTT+TGG	-	chr1.1:5994783-5994802	None:intergenic	35.0%
	ACAACTTCAACTACTTCTGC+TGG	+	chr1.1:5995520-5995539	MS.gene33004:CDS	40.0%
	AGCAGCAAAAAGATGAGTCA+CGG	+	chr1.1:5994459-5994478	MS.gene33004:CDS	40.0%
	GAATTACCTTTGGACCCATA+GGG	-	chr1.1:5994773-5994792	None:intergenic	40.0%
	TGGTCTCATTATTGGAGTTG+TGG	-	chr1.1:5994553-5994572	None:intergenic	40.0%
	TGTTACCGCTGTTACTACTA+GGG	-	chr1.1:5994692-5994711	None:intergenic	40.0%
	TTGTTACCGCTGTTACTACT+AGG	-	chr1.1:5994693-5994712	None:intergenic	40.0%
	TTTATCATCATCCTTGGAGC+TGG	+	chr1.1:5994431-5994450	MS.gene33004:CDS	40.0%
	TTTGCAATGCTTGTGGAATC+AGG	+	chr1.1:5995368-5995387	MS.gene33004:CDS	40.0%
!	CTTCTGGTGGATATATCTTC+TGG	+	chr1.1:5995622-5995641	MS.gene33004:CDS	40.0%
!	GTGGCTGCAATATTGTTGTT+TGG	-	chr1.1:5994573-5994592	None:intergenic	40.0%
!	TGTTACTACTAGGGCTTGTT+TGG	-	chr1.1:5994683-5994702	None:intergenic	40.0%
!!	CTTGATAGCTTTGTCAGTAG+TGG	-	chr1.1:5994592-5994611	None:intergenic	40.0%
	ACAAGCCCTAGTAGTAACAG+CGG	+	chr1.1:5994684-5994703	MS.gene33004:CDS	45.0%
	CGAATTACCTTTGGACCCAT+AGG	-	chr1.1:5994774-5994793	None:intergenic	45.0%
	GCAGCAAAAAGATGAGTCAC+GGG	+	chr1.1:5994460-5994479	MS.gene33004:CDS	45.0%
	TTATGATGAAGCAGCAACGG+CGG	+	chr1.1:5995594-5995613	MS.gene33004:CDS	45.0%
	TTGTGGAATCAGGCAGAGAA+AGG	+	chr1.1:5995378-5995397	MS.gene33004:CDS	45.0%
!	CAGTCACTTTGCAATGCTTG+TGG	+	chr1.1:5995361-5995380	MS.gene33004:intron	45.0%
!!!	ATATTAATATATTTTTTTTG+TGG	-	chr1.1:5994922-5994941	None:intergenic	5.0%
!!!	TAATTTTTATTATTATATCA+CGG	+	chr1.1:5995202-5995221	MS.gene33004:intron	5.0%
!!!	TATTAATATATTTTTTTTGT+GGG	-	chr1.1:5994921-5994940	None:intergenic	5.0%
	ACAGCGGTAACAACACCGTT+AGG	+	chr1.1:5994700-5994719	MS.gene33004:CDS	50.0%
	AGGGGATGTAGCCAAACCAT+TGG	-	chr1.1:5995428-5995447	None:intergenic	50.0%
	CAGCGGTAACAACACCGTTA+GGG	+	chr1.1:5994701-5994720	MS.gene33004:CDS	50.0%
	CAGGCAGAGAAAGGCAAGAA+GGG	+	chr1.1:5995387-5995406	MS.gene33004:CDS	50.0%
	GTACATCCCATACCCCACTA+TGG	+	chr1.1:5994739-5994758	MS.gene33004:CDS	50.0%
	TCAGGCAGAGAAAGGCAAGA+AGG	+	chr1.1:5995386-5995405	MS.gene33004:CDS	50.0%
	TGAGTCACGGGTCTGAGAAA+TGG	+	chr1.1:5994472-5994491	MS.gene33004:CDS	50.0%
!	ACTCCTCCATAGTGGGGTAT+GGG	-	chr1.1:5994748-5994767	None:intergenic	50.0%
	ACCATTGGCAGCTTCAGCCA+TGG	-	chr1.1:5995413-5995432	None:intergenic	55.0%
	ACTATGGAGGAGTGGCCCTA+TGG	+	chr1.1:5994755-5994774	MS.gene33004:CDS	55.0%
	ATAGGGCCACTCCTCCATAG+TGG	-	chr1.1:5994756-5994775	None:intergenic	55.0%
	CATACCCCACTATGGAGGAG+TGG	+	chr1.1:5994747-5994766	MS.gene33004:CDS	55.0%
	CATCCCATACCCCACTATGG+AGG	+	chr1.1:5994742-5994761	MS.gene33004:CDS	55.0%
	CTATGGAGGAGTGGCCCTAT+GGG	+	chr1.1:5994756-5994775	MS.gene33004:CDS	55.0%
	GAGAAAGGCAAGAAGGGCCA+TGG	+	chr1.1:5995393-5995412	MS.gene33004:CDS	55.0%
	GCTGCTATCTTCCAGCTCCA+AGG	-	chr1.1:5994445-5994464	None:intergenic	55.0%
	GGCTGAAGCTGCCAATGGTT+TGG	+	chr1.1:5995414-5995433	MS.gene33004:CDS	55.0%
	TAGGGCCACTCCTCCATAGT+GGG	-	chr1.1:5994755-5994774	None:intergenic	55.0%
!	CACTCCTCCATAGTGGGGTA+TGG	-	chr1.1:5994749-5994768	None:intergenic	55.0%
	AGGGCCACTCCTCCATAGTG+GGG	-	chr1.1:5994754-5994773	None:intergenic	60.0%
	GAGTGGCCCTATGGGTCCAA+AGG	+	chr1.1:5994764-5994783	MS.gene33004:CDS	60.0%
	GCCATGGCTGAAGCTGCCAA+TGG	+	chr1.1:5995409-5995428	MS.gene33004:CDS	60.0%
	AACGGCGGCACGACTTCTGG+TGG	+	chr1.1:5995609-5995628	MS.gene33004:CDS	65.0%
	AGCAACGGCGGCACGACTTC+TGG	+	chr1.1:5995606-5995625	MS.gene33004:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.1	gene	5994399	5995657	5994399	ID=MS.gene33004
chr1.1	mRNA	5994399	5995657	5994399	ID=MS.gene33004.t1;Parent=MS.gene33004
chr1.1	exon	5994399	5994785	5994399	ID=MS.gene33004.t1.exon1;Parent=MS.gene33004.t1
chr1.1	CDS	5994399	5994785	5994399	ID=cds.MS.gene33004.t1;Parent=MS.gene33004.t1
chr1.1	exon	5995364	5995657	5995364	ID=MS.gene33004.t1.exon2;Parent=MS.gene33004.t1
chr1.1	CDS	5995364	5995657	5995364	ID=cds.MS.gene33004.t1;Parent=MS.gene33004.t1

Gene Sequence

>MS.gene33004

ATGGTTGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTGGAAGATAGCAGCAAAAAGATGAGTCACGGGTCTGAGAAATGGATGTCTTCAAAGATGAGGTTGATGAATAAAATGATCAACACAACTGCTACTGTTGCCACAACTCCAATAATGAGACCAAACAACAATATTGCAGCCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAAACCTATTAATTATGGTACTAGTCCAAGAAATCAAAATATAAGGTACAACCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTACATCCCATACCCCACTATGGAGGAGTGGCCCTATGGGTCCAAAGGTAATTCGTTAATCCCAGCCTTATTCACTATTCTTTCGTATTAAAGTGGGAGAGTGACCTTGTTGTTATGATCCACTAAAATTTATCATTTATCGCTTCAATTCGTCCATCTCAAAAATTATTAATATCATCCCCACAAAAAAAATATATTAATATTTATTGTTCATAAGGGATGTCAAATATGGATTTTTATCAAGACCATAAAAATTCTTACAAAAACAATCCTTTACTTCCTTTAATACAAATATTTTATCAAAAAAATGTAGTATTCGTAGTAAAAGTTGAATTCATAGAAACGTCAAAATTAGAGATCAATTTAATTTTTCCTGCCTCTATTTTATCTTTTTAATTACAATATTTATAGTTGATATTCAAACATAAATAAGATATCAAGCTATATACAAGATCAATTAAAATAATTTTTATTATTATATCACGGTTTTAATTAGTCGAATATTTCAATAGATGATAGATCACACTAGAGTCATGCAAGTATTATTCCATAATTAAACTTAATTTGATTGATACTTGAATCATATCTAGTTATATATAGTTAACATGAAAACATGTTGGTGCAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGTTTGGCTACATCCCCTAAAACTAAAGTGCTTAAGATAAAGAAGCCTACACAATTCAAGACTAAGAACAAGGCTTCTACTAGTACCTCTACAACTTCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAAGAAACTTGAATCTTTTCCATTAGATTATGATTATGATGAAGCAGCAACGGCGGCACGACTTCTGGTGGATATATCTTCTGGTGTTACTTATTGA

Protein sequence

>MS.gene33004.t1

MVDSSSARDTNLSSSLELEDSSKKMSHGSEKWMSSKMRLMNKMINTTATVATTPIMRPNNNIAATTDKAIKTTTPMMKPINYGTSPRNQNIRYNQTSPSSNSGNNTVRVCSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKTKVLKIKKPTQFKTKNKASTSTSTTSTTSAGSSSQDVKKLESFPLDYDYDEAATAARLLVDISSGVTY