AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61559


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61559.t1 MTR_8g005720 94.223 502 13 2 1 502 1 486 0.0 960
MS.gene61559.t1 MTR_7g073530 72.597 489 120 5 17 502 14 491 0.0 681
MS.gene61559.t1 MTR_5g053450 41.546 414 195 9 94 499 107 481 7.04e-96 301
MS.gene61559.t1 MTR_7g073540 53.110 209 56 6 295 502 1 168 1.07e-53 179
MS.gene61559.t1 MTR_7g073560 78.814 118 25 0 385 502 21 138 9.71e-53 175
MS.gene61559.t1 MTR_7g073610 78.814 118 25 0 385 502 21 138 9.71e-53 175
MS.gene61559.t1 MTR_7g073580 87.234 47 6 0 295 341 1 47 1.25e-21 89.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61559.t1 AT5G01920 69.822 507 135 9 1 501 1 495 0.0 658
MS.gene61559.t1 AT5G01920 69.822 507 135 9 1 501 1 495 0.0 658
MS.gene61559.t1 AT1G68830 41.235 405 193 11 103 499 101 468 2.83e-86 276
MS.gene61559.t1 AT3G07980 26.238 202 94 5 141 339 20 169 3.21e-11 66.6
MS.gene61559.t1 AT3G07980 26.238 202 94 5 141 339 20 169 3.43e-11 66.6

Find 120 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGACTTGGTGTTTCTTC+TGG 0.130923 8.2:-84040500 None:intergenic
CAGATTAAACTCATTGATTT+TGG 0.180146 8.2:+84040386 MS.gene61559:CDS
CAGATTCACTATCAAGAATT+TGG 0.194374 8.2:-84040833 None:intergenic
CAGATAAACGTCCTCTTCTT+AGG 0.202236 8.2:-84040902 None:intergenic
TCATTTGGTGTTGTTTATTC+TGG 0.207852 8.2:+84039098 MS.gene61559:CDS
AATAACTTTATCCTTAGTTT+TGG 0.242510 8.2:-84039195 None:intergenic
ATTCAAGGGGCTGAAGAATT+TGG 0.244608 8.2:+84039816 MS.gene61559:CDS
GCAAGACCAGGTGTTCTTAT+TGG 0.255792 8.2:+84038963 MS.gene61559:CDS
TCTGGGAGTACATAGAGTTC+TGG 0.259567 8.2:-84040482 None:intergenic
AGGAAGTCAGCACATGTTTC+AGG 0.264333 8.2:-84039882 None:intergenic
CGTTCCTGACCGCACCCTTT+TGG 0.280827 8.2:+84040442 MS.gene61559:CDS
GAGGACTTGGTGTTTCTTCT+GGG 0.290835 8.2:-84040499 None:intergenic
TGATCTGTTTGATACTTATT+CGG 0.294442 8.2:+84040674 MS.gene61559:CDS
TTGAGGAATGGTTCAATTAC+CGG 0.308751 8.2:+84039844 MS.gene61559:CDS
AACTTAGAATCTGTCATGTT+TGG 0.314194 8.2:+84040209 MS.gene61559:CDS
AAGGTGGAAAATGGCTTGTT+TGG 0.317886 8.2:+84039946 MS.gene61559:CDS
TCTTAAGAGAAGTAATTATC+TGG 0.321848 8.2:-84040295 None:intergenic
TGTTGTTTATTCTGGTGTTT+TGG 0.331655 8.2:+84039106 MS.gene61559:CDS
AGTTCACAAAAGGTGGAAAA+TGG 0.341601 8.2:+84039937 MS.gene61559:CDS
GGATAAAGTTATTCTCAAAA+AGG 0.346106 8.2:+84039205 MS.gene61559:CDS
CAACTTAGTGGTCACCAAAC+AGG 0.353532 8.2:+84040361 MS.gene61559:CDS
CAAATTCTTGATAGTGAATC+TGG 0.355583 8.2:+84040834 MS.gene61559:CDS
TCACCTCCTAGAAGAAAATA+AGG 0.357841 8.2:-84040945 None:intergenic
GGGTTCCAACCTTGTTGCCT+TGG 0.384780 8.2:-84039174 None:intergenic
CTTAAGAAAATTCATGATAC+AGG 0.385572 8.2:+84040311 MS.gene61559:CDS
CTGGGAGTACATAGAGTTCT+GGG 0.385893 8.2:-84040481 None:intergenic
GTTGCGCTCTTTCATGTAAT+CGG 0.387894 8.2:-84040177 None:intergenic
CAAAGCAGCAGGAGACCTTA+AGG 0.395863 8.2:-84040730 None:intergenic
CTGTTTGATACTTATTCGGC+TGG 0.396996 8.2:+84040678 MS.gene61559:CDS
CAGGTTAAGGTTGGAATTCA+AGG 0.397973 8.2:+84039801 MS.gene61559:intron
ATTCCTTCTTTCCTTCGATC+AGG 0.411992 8.2:+84038858 MS.gene61559:CDS
TGAAGAATTTGGTGAATTTG+AGG 0.416266 8.2:+84039827 MS.gene61559:CDS
TAATTTCACCAATGGTTTGT+TGG 0.417180 8.2:+84038818 MS.gene61559:CDS
TTTCTTGTTGGAGATAAAAT+CGG 0.418502 8.2:+84039068 MS.gene61559:CDS
GGTGAAAAGAACGCAGCAAT+TGG 0.430107 8.2:-84040530 None:intergenic
AAAATCGGTGAAGGGTCATT+TGG 0.434082 8.2:+84039083 MS.gene61559:CDS
TTAAAATTCTTCAAAGCAGC+AGG 0.436042 8.2:-84040741 None:intergenic
TGCATTACACTTTGTAGTGT+TGG 0.436136 8.2:-84038784 None:intergenic
AGATAAACGTCCTCTTCTTA+GGG 0.438198 8.2:-84040901 None:intergenic
CAAGTTGAAGAGGAGCAAAA+AGG 0.442438 8.2:-84039001 None:intergenic
AAATGGCAATACCAACCTTA+AGG 0.442773 8.2:+84040715 MS.gene61559:CDS
ATCTGGTAGAGGCTGGGACT+TGG 0.446958 8.2:+84040851 MS.gene61559:CDS
CTATCAAGAATTTGGAGGTC+GGG 0.446971 8.2:-84040825 None:intergenic
AATGGTTTGTTGGATGTTGG+TGG 0.459164 8.2:+84038828 MS.gene61559:CDS
GAATAAGTATCAAACAGATC+AGG 0.461033 8.2:-84040672 None:intergenic
ACCAATGGTTTGTTGGATGT+TGG 0.465781 8.2:+84038825 MS.gene61559:CDS
AAATAAACCTGCCATAAGAT+TGG 0.467031 8.2:-84040551 None:intergenic
ATGGTTTGTTGGATGTTGGT+GGG 0.467597 8.2:+84038829 MS.gene61559:CDS
TTGGTGCAGCAACAGACCTT+CGG 0.468641 8.2:+84040405 MS.gene61559:CDS
TTGAATATGCAGGTTAAGGT+TGG 0.469673 8.2:+84039792 MS.gene61559:intron
GAAACATGTGCTGACTTCCT+TGG 0.472511 8.2:+84039885 MS.gene61559:CDS
AATTATCAGACATGCAAAGA+TGG 0.476231 8.2:+84038898 MS.gene61559:CDS
ATTGGCGCTGGTGGAGGACT+TGG 0.476970 8.2:-84040512 None:intergenic
TATAAAGCCAGCCAACTTAG+TGG 0.477446 8.2:+84040349 MS.gene61559:CDS
GCAGCAATTGGCGCTGGTGG+AGG 0.482408 8.2:-84040518 None:intergenic
TTGGTGACCACTAAGTTGGC+TGG 0.491398 8.2:-84040356 None:intergenic
GAGTTTAATCTGTCCCTGTT+TGG 0.495629 8.2:-84040375 None:intergenic
ATGACAGATTCTAAGTTTGA+AGG 0.504582 8.2:-84040203 None:intergenic
TGGGATTGTACTACTTCAAA+TGG 0.504661 8.2:+84040698 MS.gene61559:CDS
AACGCAGCAATTGGCGCTGG+TGG 0.504872 8.2:-84040521 None:intergenic
TTTGATAATAATTTCACCAA+TGG 0.508196 8.2:+84038810 MS.gene61559:CDS
GGCAATAGTCGGGATCCAAA+AGG 0.508880 8.2:-84040457 None:intergenic
ATCTCCAACAAGAAAATCAC+CGG 0.512048 8.2:-84039060 None:intergenic
GGATCCAAAAGGGTGCGGTC+AGG 0.512727 8.2:-84040446 None:intergenic
ACAAACTCACAGTTCACAAA+AGG 0.512881 8.2:+84039927 MS.gene61559:CDS
ATAGTGAATCTGGTAGAGGC+TGG 0.515673 8.2:+84040844 MS.gene61559:CDS
ATAGTTGTAACAGTTGGAGT+TGG 0.517434 8.2:-84038666 None:intergenic
TGGTTTGTTGGATGTTGGTG+GGG 0.524731 8.2:+84038830 MS.gene61559:CDS
TGACAGATTCTAAGTTTGAA+GGG 0.525444 8.2:-84040202 None:intergenic
ATGGCTTGTTTGGAAATTTG+AGG 0.527072 8.2:+84039956 MS.gene61559:CDS
CTTGATAGTGAATCTGGTAG+AGG 0.528425 8.2:+84040840 MS.gene61559:CDS
AGTCCTGATCGAAGGAAAGA+AGG 0.531493 8.2:-84038861 None:intergenic
GCAATAGTCGGGATCCAAAA+GGG 0.536861 8.2:-84040456 None:intergenic
AAGGTTGGAACCCAAAACTA+AGG 0.537050 8.2:+84039184 MS.gene61559:CDS
AACTCACAGTTCACAAAAGG+TGG 0.542299 8.2:+84039930 MS.gene61559:CDS
GGAGGGAGTATACTCGCCTC+AGG 0.542612 8.2:+84040802 MS.gene61559:CDS
AAAATCCAAGGCAACAAGGT+TGG 0.543197 8.2:+84039169 MS.gene61559:CDS
TATCAGCCACAAAACTTCCA+AGG 0.543904 8.2:-84039902 None:intergenic
ACAAAGCTTATATCTGAAAG+AGG 0.543985 8.2:+84040876 MS.gene61559:CDS
TTAAGTATAGTTGTAACAGT+TGG 0.548626 8.2:-84038672 None:intergenic
ATTATCAGACATGCAAAGAT+GGG 0.550083 8.2:+84038899 MS.gene61559:CDS
GATGTTGAGGTGGACAAGAG+AGG 0.551839 8.2:+84039146 MS.gene61559:CDS
GGAAGGAGAAATTTGAAGAC+CGG 0.552012 8.2:+84039041 MS.gene61559:CDS
CTGTTTGGTGACCACTAAGT+TGG 0.553834 8.2:-84040360 None:intergenic
ATTCACTATCAAGAATTTGG+AGG 0.555926 8.2:-84040830 None:intergenic
AGGTTAAGGTTGGAATTCAA+GGG 0.556860 8.2:+84039802 MS.gene61559:intron
ACCAACATCCAACAAACCAT+TGG 0.568449 8.2:-84038826 None:intergenic
TTAGCAAAACCAAGTTGAAG+AGG 0.569301 8.2:-84039011 None:intergenic
CGTAATTCTTTCCGATCCGA+AGG 0.571846 8.2:-84040421 None:intergenic
CAGGTGCTGCTCTAGATAGC+CGG 0.573871 8.2:-84039863 None:intergenic
AATTTGGTGAATTTGAGGAA+TGG 0.573912 8.2:+84039832 MS.gene61559:CDS
AACTTAGTGGTCACCAAACA+GGG 0.574734 8.2:+84040362 MS.gene61559:CDS
ATGTTTGGACGTGTGTTGCA+AGG 0.579309 8.2:+84040224 MS.gene61559:CDS
TGTTTGATACTTATTCGGCT+GGG 0.581574 8.2:+84040679 MS.gene61559:CDS
GAATTTGGAGGTCGGGCCTG+AGG 0.582291 8.2:-84040818 None:intergenic
TGGGAGTACATAGAGTTCTG+GGG 0.582528 8.2:-84040480 None:intergenic
AATAAGTATCAAACAGATCA+GGG 0.584272 8.2:-84040671 None:intergenic
GTTGGAGATAAAATCGGTGA+AGG 0.586301 8.2:+84039074 MS.gene61559:CDS
TAGTGAATCTGGTAGAGGCT+GGG 0.593926 8.2:+84040845 MS.gene61559:CDS
AAGAACGCAGCAATTGGCGC+TGG 0.598908 8.2:-84040524 None:intergenic
GGGAGTACATAGAGTTCTGG+GGG 0.603048 8.2:-84040479 None:intergenic
GCAGCAGGAGACCTTAAGGT+TGG 0.603473 8.2:-84040726 None:intergenic
ACTATCAAGAATTTGGAGGT+CGG 0.607440 8.2:-84040826 None:intergenic
AAAGAATGTGGTGGATGTTG+AGG 0.609920 8.2:+84039133 MS.gene61559:CDS
GAAAGAGGTCCCCTAAGAAG+AGG 0.622015 8.2:+84040891 MS.gene61559:CDS
TTGTAGTGTTGGTATTGACA+CGG 0.625771 8.2:-84038773 None:intergenic
ATGGCACCAATAAGAACACC+TGG 0.630764 8.2:-84038969 None:intergenic
ACTGAAGTAGTCCTGATCGA+AGG 0.632836 8.2:-84038869 None:intergenic
GGTTAAGGTTGGAATTCAAG+GGG 0.633298 8.2:+84039803 MS.gene61559:intron
AGTCGGGATCCAAAAGGGTG+CGG 0.634552 8.2:-84040451 None:intergenic
ATCGAAGGAAAGAAGGAATG+TGG 0.635614 8.2:-84038854 None:intergenic
GAGGAAAATCCAAGGCAACA+AGG 0.637928 8.2:+84039165 MS.gene61559:CDS
TTGGAGATAAAATCGGTGAA+GGG 0.644807 8.2:+84039075 MS.gene61559:CDS
GAATGTGGTGGATGTTGAGG+TGG 0.645659 8.2:+84039136 MS.gene61559:CDS
GGACAAGAGAGGAAAATCCA+AGG 0.649587 8.2:+84039157 MS.gene61559:CDS
TTTGGTCTCAAAGAATGTGG+TGG 0.650196 8.2:+84039124 MS.gene61559:CDS
ATATACTTAACTGCAAGACC+AGG 0.651960 8.2:+84038951 MS.gene61559:CDS
GCAGCAACAGACCTTCGGAT+CGG 0.658142 8.2:+84040410 MS.gene61559:CDS
GATAAACGTCCTCTTCTTAG+GGG 0.689705 8.2:-84040900 None:intergenic
GGAGTACATAGAGTTCTGGG+GGG 0.810828 8.2:-84040478 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTGAATTTTAGTATA+AGG + chr8.2:84039265-84039284 MS.gene61559:intron 10.0%
!! TATGATTACATTCAATTATT+TGG + chr8.2:84039399-84039418 MS.gene61559:intron 15.0%
!! TTTATTTAGACAAGAAATAA+GGG - chr8.2:84039249-84039268 None:intergenic 15.0%
!!! AATTCTGTTTTTAATGATTA+AGG + chr8.2:84039732-84039751 MS.gene61559:intron 15.0%
!!! TTTTATTTAGACAAGAAATA+AGG - chr8.2:84039250-84039269 None:intergenic 15.0%
!! ATATGATTTGAAAAAATGGA+GGG + chr8.2:84040785-84040804 MS.gene61559:CDS 20.0%
!! GATTATTTCATATATTGCAT+TGG + chr8.2:84040604-84040623 MS.gene61559:intron 20.0%
!! TTATTTAGACAAGAAATAAG+GGG - chr8.2:84039248-84039267 None:intergenic 20.0%
!!! AATAACTTTATCCTTAGTTT+TGG - chr8.2:84039198-84039217 None:intergenic 20.0%
!!! AGAAACATTTGTATGTTTTA+AGG - chr8.2:84038730-84038749 None:intergenic 20.0%
!!! ATAACTTTATCCTTAGTTTT+GGG - chr8.2:84039197-84039216 None:intergenic 20.0%
!!! ATATTTTCACGACATAATTA+GGG - chr8.2:84040584-84040603 None:intergenic 20.0%
!!! ATTGAATTTTAGTATAAGGT+AGG + chr8.2:84039269-84039288 MS.gene61559:intron 20.0%
!!! GAAACATTTGTATGTTTTAA+GGG - chr8.2:84038729-84038748 None:intergenic 20.0%
!!! TGCTTTGAAGAATTTTAATT+TGG + chr8.2:84040746-84040765 MS.gene61559:CDS 20.0%
!!! TTTGATAATAATTTCACCAA+TGG + chr8.2:84038810-84038829 MS.gene61559:CDS 20.0%
! AATAAGTATCAAACAGATCA+GGG - chr8.2:84040674-84040693 None:intergenic 25.0%
! AATTTGGAAATAAAAACCTG+TGG + chr8.2:84040762-84040781 MS.gene61559:CDS 25.0%
! ATAAAACTTTAGACATGTCT+AGG - chr8.2:84040034-84040053 None:intergenic 25.0%
! ATTCCTTAACATACACTAAT+TGG + chr8.2:84040119-84040138 MS.gene61559:intron 25.0%
! CCTTTACATTCAATTATTAC+CGG + chr8.2:84039435-84039454 MS.gene61559:intron 25.0%
! CTTAAGAAAATTCATGATAC+AGG + chr8.2:84040311-84040330 MS.gene61559:CDS 25.0%
! CTTAATTTATCATCTGAATC+TGG + chr8.2:84040089-84040108 MS.gene61559:intron 25.0%
! GATATGATTTGAAAAAATGG+AGG + chr8.2:84040784-84040803 MS.gene61559:CDS 25.0%
! GGATAAAGTTATTCTCAAAA+AGG + chr8.2:84039205-84039224 MS.gene61559:CDS 25.0%
! GTGGATATGATTTGAAAAAA+TGG + chr8.2:84040781-84040800 MS.gene61559:CDS 25.0%
! TCTTAAGAGAAGTAATTATC+TGG - chr8.2:84040298-84040317 None:intergenic 25.0%
! TGATCTGTTTGATACTTATT+CGG + chr8.2:84040674-84040693 MS.gene61559:CDS 25.0%
! TTAAGTATAGTTGTAACAGT+TGG - chr8.2:84038675-84038694 None:intergenic 25.0%
! TTATTGCTTGTACTTCATTT+AGG + chr8.2:84040050-84040069 MS.gene61559:intron 25.0%
! TTTCTTGTTGGAGATAAAAT+CGG + chr8.2:84039068-84039087 MS.gene61559:CDS 25.0%
!! CATATTTTCACGACATAATT+AGG - chr8.2:84040585-84040604 None:intergenic 25.0%
!!! CAGATTAAACTCATTGATTT+TGG + chr8.2:84040386-84040405 MS.gene61559:CDS 25.0%
!!! TTAAATTTTAACCATCCATG+CGG + chr8.2:84039630-84039649 MS.gene61559:intron 25.0%
!!! TTTTTTCAAATCATATCCAC+AGG - chr8.2:84040781-84040800 None:intergenic 25.0%
AAATAAACCTGCCATAAGAT+TGG - chr8.2:84040554-84040573 None:intergenic 30.0%
AACTTAGAATCTGTCATGTT+TGG + chr8.2:84040209-84040228 MS.gene61559:CDS 30.0%
AATTATCAGACATGCAAAGA+TGG + chr8.2:84038898-84038917 MS.gene61559:CDS 30.0%
ACAAAGCTTATATCTGAAAG+AGG + chr8.2:84040876-84040895 MS.gene61559:CDS 30.0%
AGACATGTCTAGGTAATTTA+AGG - chr8.2:84040024-84040043 None:intergenic 30.0%
AGCTAACTAATTGAATATGC+AGG + chr8.2:84039782-84039801 MS.gene61559:intron 30.0%
ATGACAGATTCTAAGTTTGA+AGG - chr8.2:84040206-84040225 None:intergenic 30.0%
ATGCTTAAAACAACCAAAAC+AGG + chr8.2:84039306-84039325 MS.gene61559:intron 30.0%
ATGTCATATCTCTTTCAATG+TGG + chr8.2:84039572-84039591 MS.gene61559:intron 30.0%
ATTATCAGACATGCAAAGAT+GGG + chr8.2:84038899-84038918 MS.gene61559:CDS 30.0%
ATTCACTATCAAGAATTTGG+AGG - chr8.2:84040833-84040852 None:intergenic 30.0%
CAGATTCACTATCAAGAATT+TGG - chr8.2:84040836-84040855 None:intergenic 30.0%
CCGGTAATAATTGAATGTAA+AGG - chr8.2:84039438-84039457 None:intergenic 30.0%
CTAATTGAATATGCAGGTTA+AGG + chr8.2:84039788-84039807 MS.gene61559:intron 30.0%
GAATAAGTATCAAACAGATC+AGG - chr8.2:84040675-84040694 None:intergenic 30.0%
TCTCCAATTAGTGTATGTTA+AGG - chr8.2:84040125-84040144 None:intergenic 30.0%
TGACAGATTCTAAGTTTGAA+GGG - chr8.2:84040205-84040224 None:intergenic 30.0%
TGTAGTGTCTCTTAGAATTT+GGG + chr8.2:84039472-84039491 MS.gene61559:intron 30.0%
TGTCATATCTCTTTCAATGT+GGG + chr8.2:84039573-84039592 MS.gene61559:intron 30.0%
TTAAAATTCTTCAAAGCAGC+AGG - chr8.2:84040744-84040763 None:intergenic 30.0%
! AATTTGGTGAATTTGAGGAA+TGG + chr8.2:84039832-84039851 MS.gene61559:CDS 30.0%
! GTTTTGCTAATTTATCTGGA+AGG + chr8.2:84039024-84039043 MS.gene61559:CDS 30.0%
! TAATTTCACCAATGGTTTGT+TGG + chr8.2:84038818-84038837 MS.gene61559:CDS 30.0%
! TGAAGAATTTGGTGAATTTG+AGG + chr8.2:84039827-84039846 MS.gene61559:CDS 30.0%
!! CAAATTCTTGATAGTGAATC+TGG + chr8.2:84040834-84040853 MS.gene61559:CDS 30.0%
!! TCATTTGGTGTTGTTTATTC+TGG + chr8.2:84039098-84039117 MS.gene61559:CDS 30.0%
!! TGTTGTTTATTCTGGTGTTT+TGG + chr8.2:84039106-84039125 MS.gene61559:CDS 30.0%
!!! AGACATCCTTATTTTCTTCT+AGG + chr8.2:84040939-84040958 MS.gene61559:CDS 30.0%
!!! CTTGGTTTTGCTAATTTATC+TGG + chr8.2:84039020-84039039 MS.gene61559:CDS 30.0%
AAATGGCAATACCAACCTTA+AGG + chr8.2:84040715-84040734 MS.gene61559:CDS 35.0%
ACAAACTCACAGTTCACAAA+AGG + chr8.2:84039927-84039946 MS.gene61559:CDS 35.0%
ACTATCAAGAATTTGGAGGT+CGG - chr8.2:84040829-84040848 None:intergenic 35.0%
AGATAAACGTCCTCTTCTTA+GGG - chr8.2:84040904-84040923 None:intergenic 35.0%
AGCAAAAAGGTAAGCATCAA+TGG - chr8.2:84038991-84039010 None:intergenic 35.0%
AGGTTAAGGTTGGAATTCAA+GGG + chr8.2:84039802-84039821 MS.gene61559:intron 35.0%
AGTTCACAAAAGGTGGAAAA+TGG + chr8.2:84039937-84039956 MS.gene61559:CDS 35.0%
ATAGTTGTAACAGTTGGAGT+TGG - chr8.2:84038669-84038688 None:intergenic 35.0%
ATATACTTAACTGCAAGACC+AGG + chr8.2:84038951-84038970 MS.gene61559:CDS 35.0%
ATCTCCAACAAGAAAATCAC+CGG - chr8.2:84039063-84039082 None:intergenic 35.0%
GTAACTCAACCCTACAAAAT+CGG + chr8.2:84039501-84039520 MS.gene61559:intron 35.0%
GTGTAGTGTCTCTTAGAATT+TGG + chr8.2:84039471-84039490 MS.gene61559:intron 35.0%
TCACCTCCTAGAAGAAAATA+AGG - chr8.2:84040948-84040967 None:intergenic 35.0%
TGCAATCGAAATATGAGTCA+AGG - chr8.2:84039984-84040003 None:intergenic 35.0%
TGCATTACACTTTGTAGTGT+TGG - chr8.2:84038787-84038806 None:intergenic 35.0%
TGGGATTGTACTACTTCAAA+TGG + chr8.2:84040698-84040717 MS.gene61559:CDS 35.0%
TGTTTGATACTTATTCGGCT+GGG + chr8.2:84040679-84040698 MS.gene61559:CDS 35.0%
TTGAATATGCAGGTTAAGGT+TGG + chr8.2:84039792-84039811 MS.gene61559:intron 35.0%
TTGAGGAATGGTTCAATTAC+CGG + chr8.2:84039844-84039863 MS.gene61559:CDS 35.0%
TTGCTTGTACTTCATTTAGG+TGG + chr8.2:84040053-84040072 MS.gene61559:intron 35.0%
TTGGAGATAAAATCGGTGAA+GGG + chr8.2:84039075-84039094 MS.gene61559:CDS 35.0%
! AGATGGGAGTTTCTTCTTTT+TGG + chr8.2:84038915-84038934 MS.gene61559:CDS 35.0%
! CGTTCTTTTCACCAATCTTA+TGG + chr8.2:84040540-84040559 MS.gene61559:CDS 35.0%
! TTAGCAAAACCAAGTTGAAG+AGG - chr8.2:84039014-84039033 None:intergenic 35.0%
!! ATGGCTTGTTTGGAAATTTG+AGG + chr8.2:84039956-84039975 MS.gene61559:CDS 35.0%
!! TTGTAGTGTTGGTATTGACA+CGG - chr8.2:84038776-84038795 None:intergenic 35.0%
!!! CATCCTTATTTTCTTCTAGG+AGG + chr8.2:84040942-84040961 MS.gene61559:CDS 35.0%
!!! TGTTTTGGTCTCAAAGAATG+TGG + chr8.2:84039121-84039140 MS.gene61559:CDS 35.0%
!!! TTCTTTTTGGTGGACTCATA+TGG + chr8.2:84038928-84038947 MS.gene61559:CDS 35.0%
AAAATCCAAGGCAACAAGGT+TGG + chr8.2:84039169-84039188 MS.gene61559:CDS 40.0%
AAAATCGGTGAAGGGTCATT+TGG + chr8.2:84039083-84039102 MS.gene61559:CDS 40.0%
AACTCACAGTTCACAAAAGG+TGG + chr8.2:84039930-84039949 MS.gene61559:CDS 40.0%
AACTTAGTGGTCACCAAACA+GGG + chr8.2:84040362-84040381 MS.gene61559:CDS 40.0%
AAGGTTGGAACCCAAAACTA+AGG + chr8.2:84039184-84039203 MS.gene61559:CDS 40.0%
AATGTAAAGGACATGTGTCG+TGG - chr8.2:84039425-84039444 None:intergenic 40.0%
ACCAACATCCAACAAACCAT+TGG - chr8.2:84038829-84038848 None:intergenic 40.0%
ATCGAAGGAAAGAAGGAATG+TGG - chr8.2:84038857-84038876 None:intergenic 40.0%
ATTCAAGGGGCTGAAGAATT+TGG + chr8.2:84039816-84039835 MS.gene61559:CDS 40.0%
ATTCCTTCTTTCCTTCGATC+AGG + chr8.2:84038858-84038877 MS.gene61559:CDS 40.0%
CAGATAAACGTCCTCTTCTT+AGG - chr8.2:84040905-84040924 None:intergenic 40.0%
CAGGTTAAGGTTGGAATTCA+AGG + chr8.2:84039801-84039820 MS.gene61559:intron 40.0%
CCAAAACAGGCTATAGCATT+AGG + chr8.2:84039319-84039338 MS.gene61559:intron 40.0%
CTACACTGACATTAACATGC+CGG - chr8.2:84039457-84039476 None:intergenic 40.0%
CTATCAAGAATTTGGAGGTC+GGG - chr8.2:84040828-84040847 None:intergenic 40.0%
CTGTTTGATACTTATTCGGC+TGG + chr8.2:84040678-84040697 MS.gene61559:CDS 40.0%
GAGTTTAATCTGTCCCTGTT+TGG - chr8.2:84040378-84040397 None:intergenic 40.0%
GATAAACGTCCTCTTCTTAG+GGG - chr8.2:84040903-84040922 None:intergenic 40.0%
GGAAGGAGAAATTTGAAGAC+CGG + chr8.2:84039041-84039060 MS.gene61559:CDS 40.0%
GGTTAAGGTTGGAATTCAAG+GGG + chr8.2:84039803-84039822 MS.gene61559:intron 40.0%
GTGTCTCTTAGAATTTGGGT+TGG + chr8.2:84039476-84039495 MS.gene61559:intron 40.0%
GTTGCGCTCTTTCATGTAAT+CGG - chr8.2:84040180-84040199 None:intergenic 40.0%
GTTGGAGATAAAATCGGTGA+AGG + chr8.2:84039074-84039093 MS.gene61559:CDS 40.0%
TATAAAGCCAGCCAACTTAG+TGG + chr8.2:84040349-84040368 MS.gene61559:CDS 40.0%
TATCAGCCACAAAACTTCCA+AGG - chr8.2:84039905-84039924 None:intergenic 40.0%
TTTGGTCTCAAAGAATGTGG+TGG + chr8.2:84039124-84039143 MS.gene61559:CDS 40.0%
! AAGACCGGTGATTTTCTTGT+TGG + chr8.2:84039056-84039075 MS.gene61559:CDS 40.0%
! CAAGCAACAACTTTAGCTTC+TGG + chr8.2:84039663-84039682 MS.gene61559:intron 40.0%
! CAAGTTGAAGAGGAGCAAAA+AGG - chr8.2:84039004-84039023 None:intergenic 40.0%
! CCTAATGCTATAGCCTGTTT+TGG - chr8.2:84039322-84039341 None:intergenic 40.0%
! CTTTTCACCAATCTTATGGC+AGG + chr8.2:84040544-84040563 MS.gene61559:CDS 40.0%
! CTTTTTGCTCCTCTTCAACT+TGG + chr8.2:84039002-84039021 MS.gene61559:CDS 40.0%
! TGACTTCCTTGGAAGTTTTG+TGG + chr8.2:84039896-84039915 MS.gene61559:CDS 40.0%
! TGGGAGTTTCTTCTTTTTGG+TGG + chr8.2:84038918-84038937 MS.gene61559:CDS 40.0%
!! AAAGAATGTGGTGGATGTTG+AGG + chr8.2:84039133-84039152 MS.gene61559:CDS 40.0%
!! AAGGTGGAAAATGGCTTGTT+TGG + chr8.2:84039946-84039965 MS.gene61559:CDS 40.0%
!! AATGGTTTGTTGGATGTTGG+TGG + chr8.2:84038828-84038847 MS.gene61559:CDS 40.0%
!! ACCAATGGTTTGTTGGATGT+TGG + chr8.2:84038825-84038844 MS.gene61559:CDS 40.0%
!! ACCTTACAAGCCGATTTTGT+AGG - chr8.2:84039514-84039533 None:intergenic 40.0%
!! ATGGTTTGTTGGATGTTGGT+GGG + chr8.2:84038829-84038848 MS.gene61559:CDS 40.0%
!! CCTTACAAGCCGATTTTGTA+GGG - chr8.2:84039513-84039532 None:intergenic 40.0%
!! CTTGATAGTGAATCTGGTAG+AGG + chr8.2:84040840-84040859 MS.gene61559:CDS 40.0%
!! TTTTCTTCTAGGAGGTGATC+AGG + chr8.2:84040950-84040969 MS.gene61559:CDS 40.0%
ACTGAAGTAGTCCTGATCGA+AGG - chr8.2:84038872-84038891 None:intergenic 45.0%
AGGAAGTCAGCACATGTTTC+AGG - chr8.2:84039885-84039904 None:intergenic 45.0%
AGTACGATCTCCCTGTGATA+CGG - chr8.2:84040153-84040172 None:intergenic 45.0%
AGTCCTGATCGAAGGAAAGA+AGG - chr8.2:84038864-84038883 None:intergenic 45.0%
ATAGTGAATCTGGTAGAGGC+TGG + chr8.2:84040844-84040863 MS.gene61559:CDS 45.0%
ATGGCACCAATAAGAACACC+TGG - chr8.2:84038972-84038991 None:intergenic 45.0%
ATGTTTGGACGTGTGTTGCA+AGG + chr8.2:84040224-84040243 MS.gene61559:CDS 45.0%
CAACTTAGTGGTCACCAAAC+AGG + chr8.2:84040361-84040380 MS.gene61559:CDS 45.0%
CGTAATTCTTTCCGATCCGA+AGG - chr8.2:84040424-84040443 None:intergenic 45.0%
CTCCCGATAGACATTGTGAA+GGG - chr8.2:84039600-84039619 None:intergenic 45.0%
GAGGAAAATCCAAGGCAACA+AGG + chr8.2:84039165-84039184 MS.gene61559:CDS 45.0%
GCAAGACCAGGTGTTCTTAT+TGG + chr8.2:84038963-84038982 MS.gene61559:CDS 45.0%
GCAATAGTCGGGATCCAAAA+GGG - chr8.2:84040459-84040478 None:intergenic 45.0%
GGACAAGAGAGGAAAATCCA+AGG + chr8.2:84039157-84039176 MS.gene61559:CDS 45.0%
GGAGAGTTATCCGTATCACA+GGG + chr8.2:84040140-84040159 MS.gene61559:intron 45.0%
GGTCCCTTCACAATGTCTAT+CGG + chr8.2:84039594-84039613 MS.gene61559:intron 45.0%
GGTGAAAAGAACGCAGCAAT+TGG - chr8.2:84040533-84040552 None:intergenic 45.0%
GTCCCTTCACAATGTCTATC+GGG + chr8.2:84039595-84039614 MS.gene61559:intron 45.0%
GTTAAGTAAAGCCGCATGGA+TGG - chr8.2:84039644-84039663 None:intergenic 45.0%
TAGTGAATCTGGTAGAGGCT+GGG + chr8.2:84040845-84040864 MS.gene61559:CDS 45.0%
TCGGATTGAAGATGTGTCCA+CGG + chr8.2:84039362-84039381 MS.gene61559:intron 45.0%
TGGAGAGTTATCCGTATCAC+AGG + chr8.2:84040139-84040158 MS.gene61559:intron 45.0%
! CTGGGAGTACATAGAGTTCT+GGG - chr8.2:84040484-84040503 None:intergenic 45.0%
! CTGTTTGGTGACCACTAAGT+TGG - chr8.2:84040363-84040382 None:intergenic 45.0%
! GCTTGTTAAGTAAAGCCGCA+TGG - chr8.2:84039648-84039667 None:intergenic 45.0%
! TCTGGGAGTACATAGAGTTC+TGG - chr8.2:84040485-84040504 None:intergenic 45.0%
! TGGGAGTACATAGAGTTCTG+GGG - chr8.2:84040483-84040502 None:intergenic 45.0%
!! CCCTACAAAATCGGCTTGTA+AGG + chr8.2:84039510-84039529 MS.gene61559:intron 45.0%
!! GAAACATGTGCTGACTTCCT+TGG + chr8.2:84039885-84039904 MS.gene61559:CDS 45.0%
!! GAGGACTTGGTGTTTCTTCT+GGG - chr8.2:84040502-84040521 None:intergenic 45.0%
!! TGGTTTGTTGGATGTTGGTG+GGG + chr8.2:84038830-84038849 MS.gene61559:CDS 45.0%
ATATGTGTCATGCCAAGCCG+TGG - chr8.2:84039382-84039401 None:intergenic 50.0%
CAAAGCAGCAGGAGACCTTA+AGG - chr8.2:84040733-84040752 None:intergenic 50.0%
GAAAGAGGTCCCCTAAGAAG+AGG + chr8.2:84040891-84040910 MS.gene61559:CDS 50.0%
GATGTTGAGGTGGACAAGAG+AGG + chr8.2:84039146-84039165 MS.gene61559:CDS 50.0%
GCTATGTACCACAGACACCT+CGG + chr8.2:84039343-84039362 MS.gene61559:intron 50.0%
GCTCCCGATAGACATTGTGA+AGG - chr8.2:84039601-84039620 None:intergenic 50.0%
GGCAATAGTCGGGATCCAAA+AGG - chr8.2:84040460-84040479 None:intergenic 50.0%
GTGGACACATCTTCAATCCG+AGG - chr8.2:84039363-84039382 None:intergenic 50.0%
TTGAAGATGTGTCCACGGCT+TGG + chr8.2:84039367-84039386 MS.gene61559:intron 50.0%
TTGGTGCAGCAACAGACCTT+CGG + chr8.2:84040405-84040424 MS.gene61559:CDS 50.0%
! GGGAGTACATAGAGTTCTGG+GGG - chr8.2:84040482-84040501 None:intergenic 50.0%
! TCTTCAATCCGAGGTGTCTG+TGG - chr8.2:84039354-84039373 None:intergenic 50.0%
! TTGGTGACCACTAAGTTGGC+TGG - chr8.2:84040359-84040378 None:intergenic 50.0%
!! GAATGTGGTGGATGTTGAGG+TGG + chr8.2:84039136-84039155 MS.gene61559:CDS 50.0%
!! GGAGGACTTGGTGTTTCTTC+TGG - chr8.2:84040503-84040522 None:intergenic 50.0%
!! GGAGTACATAGAGTTCTGGG+GGG - chr8.2:84040481-84040500 None:intergenic 50.0%
AAGAACGCAGCAATTGGCGC+TGG - chr8.2:84040527-84040546 None:intergenic 55.0%
AGTCGGGATCCAAAAGGGTG+CGG - chr8.2:84040454-84040473 None:intergenic 55.0%
ATCTGGTAGAGGCTGGGACT+TGG + chr8.2:84040851-84040870 MS.gene61559:CDS 55.0%
GCAGCAACAGACCTTCGGAT+CGG + chr8.2:84040410-84040429 MS.gene61559:CDS 55.0%
GCAGCAGGAGACCTTAAGGT+TGG - chr8.2:84040729-84040748 None:intergenic 55.0%
GGGTTCCAACCTTGTTGCCT+TGG - chr8.2:84039177-84039196 None:intergenic 55.0%
!! AGTTCTGGGGGGCAATAGTC+GGG - chr8.2:84040470-84040489 None:intergenic 55.0%
!! CAGGTGCTGCTCTAGATAGC+CGG - chr8.2:84039866-84039885 None:intergenic 55.0%
!! GAGTTCTGGGGGGCAATAGT+CGG - chr8.2:84040471-84040490 None:intergenic 55.0%
GAATTTGGAGGTCGGGCCTG+AGG - chr8.2:84040821-84040840 None:intergenic 60.0%
! AACGCAGCAATTGGCGCTGG+TGG - chr8.2:84040524-84040543 None:intergenic 60.0%
! CGTTCCTGACCGCACCCTTT+TGG + chr8.2:84040442-84040461 MS.gene61559:CDS 60.0%
! GGAGGGAGTATACTCGCCTC+AGG + chr8.2:84040802-84040821 MS.gene61559:CDS 60.0%
! GGATCCAAAAGGGTGCGGTC+AGG - chr8.2:84040449-84040468 None:intergenic 60.0%
!! ATTGGCGCTGGTGGAGGACT+TGG - chr8.2:84040515-84040534 None:intergenic 60.0%
!! GCAGCAATTGGCGCTGGTGG+AGG - chr8.2:84040521-84040540 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.2 gene 84038648 84041013 84038648 ID=MS.gene61559
chr8.2 mRNA 84038648 84041013 84038648 ID=MS.gene61559.t1;Parent=MS.gene61559
chr8.2 exon 84038648 84039226 84038648 ID=MS.gene61559.t1.exon1;Parent=MS.gene61559.t1
chr8.2 CDS 84038648 84039226 84038648 ID=cds.MS.gene61559.t1;Parent=MS.gene61559.t1
chr8.2 exon 84039804 84039977 84039804 ID=MS.gene61559.t1.exon2;Parent=MS.gene61559.t1
chr8.2 CDS 84039804 84039977 84039804 ID=cds.MS.gene61559.t1;Parent=MS.gene61559.t1
chr8.2 exon 84040161 84040565 84040161 ID=MS.gene61559.t1.exon3;Parent=MS.gene61559.t1
chr8.2 CDS 84040161 84040565 84040161 ID=cds.MS.gene61559.t1;Parent=MS.gene61559.t1
chr8.2 exon 84040663 84041013 84040663 ID=MS.gene61559.t1.exon4;Parent=MS.gene61559.t1
chr8.2 CDS 84040663 84041013 84040663 ID=cds.MS.gene61559.t1;Parent=MS.gene61559.t1
Gene Sequence

>MS.gene61559

ATGGTTTCTTTGCTTCATCCAACTCCAACTGTTACAACTATACTTAAGCAGCGAACATCAACAATCTGTTTCTTCTGTCCCTTAAAACATACAAATGTTTCTTTCTTAACTAACACAAACACAAACCGTGTCAATACCAACACTACAAAGTGTAATGCATTTTTTGATAATAATTTCACCAATGGTTTGTTGGATGTTGGTGGGGACCACATTCCTTCTTTCCTTCGATCAGGACTACTTCAGTTTCAAGAATTATCAGACATGCAAAGATGGGAGTTTCTTCTTTTTGGTGGACTCATATGGATATACTTAACTGCAAGACCAGGTGTTCTTATTGGTGCCATTGATGCTTACCTTTTTGCTCCTCTTCAACTTGGTTTTGCTAATTTATCTGGAAGGAGAAATTTGAAGACCGGTGATTTTCTTGTTGGAGATAAAATCGGTGAAGGGTCATTTGGTGTTGTTTATTCTGGTGTTTTGGTCTCAAAGAATGTGGTGGATGTTGAGGTGGACAAGAGAGGAAAATCCAAGGCAACAAGGTTGGAACCCAAAACTAAGGATAAAGTTATTCTCAAAAAGGTATGTATCATTCATTAACCCCTTATTTCTTGTCTAAATAAAATTGAATTTTAGTATAAGGTAGGATTCTGCAATGTGAATGCTTAAAACAACCAAAACAGGCTATAGCATTAGGAGCTATGTACCACAGACACCTCGGATTGAAGATGTGTCCACGGCTTGGCATGACACATATGATTACATTCAATTATTTGGCCACGACACATGTCCTTTACATTCAATTATTACCGGCATGTTAATGTCAGTGTAGTGTCTCTTAGAATTTGGGTTGGACGTAACTCAACCCTACAAAATCGGCTTGTAAGGTGACGATTGTCTGTCACTTATTAACTCATGTTCATGTTCATGTCATATCTCTTTCAATGTGGGTCCCTTCACAATGTCTATCGGGAGCATTTTTGTCTTAAATTTTAACCATCCATGCGGCTTTACTTAACAAGCAACAACTTTAGCTTCTGGAAGAATTGTTGATTTCTGATTTGTTACGTATTCTGCATTCTTATAAAATTCTGTTTTTAATGATTAAGGAGATAAAAAATTAGAAAGTCTATTTGCAGCTAACTAATTGAATATGCAGGTTAAGGTTGGAATTCAAGGGGCTGAAGAATTTGGTGAATTTGAGGAATGGTTCAATTACCGGCTATCTAGAGCAGCACCTGAAACATGTGCTGACTTCCTTGGAAGTTTTGTGGCTGATAAAACAAACTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAATTTGAGGTGCCTTGACTCATATTTCGATTGCATTATTTAAAATTAATAGCCTTAAATTACCTAGACATGTCTAAAGTTTTATTGCTTGTACTTCATTTAGGTGGTTTTAAATGTTATCTTAATTTATCATCTGAATCTGGTTTGTTCATTCCTTAACATACACTAATTGGAGAGTTATCCGTATCACAGGGAGATCGTACTCTTGCCGATTACATGAAAGAGCGCAACTTCCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTGTTGCAAGGCGTAGATTCTTCTAGACGAAATGCATTGATCATCAAGCAAATCATGCGCCAGATAATTACTTCTCTTAAGAAAATTCATGATACAGGCATTGTTCACAGAGATATAAAGCCAGCCAACTTAGTGGTCACCAAACAGGGACAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTTCGGATCGGAAAGAATTACGTTCCTGACCGCACCCTTTTGGATCCCGACTATTGCCCCCCAGAACTCTATGTACTCCCAGAAGAAACACCAAGTCCTCCACCAGCGCCAATTGCTGCGTTCTTTTCACCAATCTTATGGCAGGTTTATTTTCATATACCCTAATTATGTCGTGAAAATATGATTATTTCATATATTGCATTGGAAGTGCTAAAGTTGTGTTATGTAATTATTGCTGCAGTTAAACAGCCCTGATCTGTTTGATACTTATTCGGCTGGGATTGTACTACTTCAAATGGCAATACCAACCTTAAGGTCTCCTGCTGCTTTGAAGAATTTTAATTTGGAAATAAAAACCTGTGGATATGATTTGAAAAAATGGAGGGAGTATACTCGCCTCAGGCCCGACCTCCAAATTCTTGATAGTGAATCTGGTAGAGGCTGGGACTTGGCAACAAAGCTTATATCTGAAAGAGGTCCCCTAAGAAGAGGACGTTTATCTGCTGCTTCAGCTTTGAGACATCCTTATTTTCTTCTAGGAGGTGATCAGGCAGCTGCAGTTCTTTCAAAATTAAGCTTAAGTAGAAAGTAA

Protein sequence

>MS.gene61559.t1

MVSLLHPTPTVTTILKQRTSTICFFCPLKHTNVSFLTNTNTNRVNTNTTKCNAFFDNNFTNGLLDVGGDHIPSFLRSGLLQFQELSDMQRWEFLLFGGLIWIYLTARPGVLIGAIDAYLFAPLQLGFANLSGRRNLKTGDFLVGDKIGEGSFGVVYSGVLVSKNVVDVEVDKRGKSKATRLEPKTKDKVILKKVKVGIQGAEEFGEFEEWFNYRLSRAAPETCADFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKERNFPSNLESVMFGRVLQGVDSSRRNALIIKQIMRQIITSLKKIHDTGIVHRDIKPANLVVTKQGQIKLIDFGAATDLRIGKNYVPDRTLLDPDYCPPELYVLPEETPSPPPAPIAAFFSPILWQLNSPDLFDTYSAGIVLLQMAIPTLRSPAALKNFNLEIKTCGYDLKKWREYTRLRPDLQILDSESGRGWDLATKLISERGPLRRGRLSAASALRHPYFLLGGDQAAAVLSKLSLSRK