AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77660.t1 MTR_1g041890 96.418 335 12 0 1 335 214 548 0.0 670
MS.gene77660.t1 MTR_7g080430 42.262 336 188 4 3 332 127 462 1.18e-80 253
MS.gene77660.t1 MTR_7g112100 32.615 325 205 8 17 332 146 465 5.58e-42 152
MS.gene77660.t1 MTR_7g110570 30.357 224 149 4 103 321 156 377 3.88e-15 76.3
MS.gene77660.t1 MTR_7g110570 30.357 224 149 4 103 321 162 383 4.53e-15 76.3
MS.gene77660.t1 MTR_7g108300 26.453 344 213 12 3 323 62 388 8.70e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77660.t1 AT3G57190 55.786 337 139 5 1 334 71 400 6.50e-127 369
MS.gene77660.t1 AT5G36170 40.854 328 188 4 10 331 114 441 1.24e-75 240
MS.gene77660.t1 AT5G36170 40.854 328 188 4 10 331 115 442 1.34e-75 239
MS.gene77660.t1 AT1G56350 33.538 325 206 7 16 333 152 473 2.82e-44 158
MS.gene77660.t1 AT5G36170 34.717 265 155 5 10 256 114 378 2.16e-42 151
MS.gene77660.t1 AT5G36170 34.717 265 155 5 10 256 115 379 2.35e-42 151
MS.gene77660.t1 AT3G62910 26.744 258 179 7 78 329 144 397 8.32e-16 78.2
MS.gene77660.t1 AT2G47020 29.218 243 164 5 93 329 91 331 5.20e-13 69.3
MS.gene77660.t1 AT2G47020 29.218 243 164 5 93 329 156 396 8.49e-13 69.3
MS.gene77660.t1 AT2G47020 31.638 177 114 4 93 264 156 330 1.38e-11 65.5

Find 0 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAAAAAATAATAATAATT+TGG - 7283:39529-39548 MS.gene77660:intergenic 0.0%
!! ATTCTCATTTAAAAAAAAAA+AGG - 7283:42361-42380 MS.gene77660:intergenic 10.0%
!!! AAATTTTTTTTGACATTTTT+TGG - 7283:40363-40382 MS.gene77660:intergenic 10.0%
!!! AAGTTAATTTTATTTCATTT+TGG - 7283:42196-42215 MS.gene77660:intergenic 10.0%
!!! TTTTCATATAAAATGAAAAA+GGG - 7283:39560-39579 MS.gene77660:intergenic 10.0%
!!! TTTTTCATATAAAATGAAAA+AGG - 7283:39561-39580 MS.gene77660:intergenic 10.0%
!! CAATAATGTTTGTAATTTAA+GGG + 7283:42169-42188 MS.gene77660:intron 15.0%
!! TAAGAATTTACATTACATTA+CGG + 7283:39444-39463 MS.gene77660:intron 15.0%
!! TTGAGTTTGTATTTATATTA+AGG + 7283:41725-41744 MS.gene77660:intron 15.0%
!! TTTCATATAAAATGAAAAAG+GGG - 7283:39559-39578 MS.gene77660:intergenic 15.0%
!!! AAAAAAAATTTCAGTTTTTC+CGG + 7283:40372-40391 MS.gene77660:intron 15.0%
!! AAGAATTTACATTACATTAC+GGG + 7283:39445-39464 MS.gene77660:intron 20.0%
!! AATGAAACAAGAAAACTTAA+AGG + 7283:42144-42163 MS.gene77660:intron 20.0%
!! AATTAAAGACAATGTATTTC+CGG - 7283:40394-40413 MS.gene77660:intergenic 20.0%
!! ATACAGTTCAAAACATATAT+AGG + 7283:40901-40920 MS.gene77660:intron 20.0%
!! ATATGAGTGAAATTAATACA+AGG - 7283:42242-42261 MS.gene77660:intergenic 20.0%
!! ATGAATAAAAAAAATAGCAG+CGG - 7283:39839-39858 MS.gene77660:intergenic 20.0%
!! CAAAGACTAATATGAAATAT+AGG - 7283:39870-39889 MS.gene77660:intergenic 20.0%
!! CAGAAGTGAAAATAAATAAT+AGG - 7283:39239-39258 MS.gene77660:intergenic 20.0%
!! CCAATAATGTTTGTAATTTA+AGG + 7283:42168-42187 MS.gene77660:intron 20.0%
!! CCTTAAATTACAAACATTAT+TGG - 7283:42171-42190 MS.gene77660:intergenic 20.0%
!! CTCTTAAAGATAGAAAAATT+GGG - 7283:41110-41129 MS.gene77660:intergenic 20.0%
!! GAAACCTAAAAATAACTTAA+GGG - 7283:41769-41788 MS.gene77660:intergenic 20.0%
!! GAAATTGAATTTACTCAAAA+AGG - 7283:40868-40887 MS.gene77660:intergenic 20.0%
!!! CAAGTTTTTTAAGTGTTTTT+AGG + 7283:41302-41321 MS.gene77660:intron 20.0%
!!! GAAAAATCAGTTTTACAATT+AGG - 7283:40168-40187 MS.gene77660:intergenic 20.0%
!!! TAAGTTTTCTTGTTTCATTT+TGG - 7283:42143-42162 MS.gene77660:intergenic 20.0%
!!! TGTAATTGTTGTTTAACTTA+TGG - 7283:40642-40661 MS.gene77660:intergenic 20.0%
!!! TTTGGATTTTTCAGATATAT+TGG - 7283:40345-40364 MS.gene77660:intergenic 20.0%
! AACATTTCTTTACAATACGT+TGG + 7283:40929-40948 MS.gene77660:intron 25.0%
! AGATCTTAATAGGTTAACAT+TGG + 7283:40661-40680 MS.gene77660:intron 25.0%
! ATGAAACGAAAACAACTTAA+GGG - 7283:41860-41879 MS.gene77660:intergenic 25.0%
! ATTGAATTTACTCAAAAAGG+TGG - 7283:40865-40884 MS.gene77660:intergenic 25.0%
! CAAATGTGATGTATTGAAAT+CGG - 7283:40560-40579 MS.gene77660:intergenic 25.0%
! CAACAATTACAGATCTTAAT+AGG + 7283:40651-40670 MS.gene77660:intron 25.0%
! CCTCTTAAAGATAGAAAAAT+TGG - 7283:41111-41130 MS.gene77660:intergenic 25.0%
! CGAAACCTAAAAATAACTTA+AGG - 7283:41770-41789 MS.gene77660:intergenic 25.0%
! CTACAATGTGTATAATGATA+GGG - 7283:40992-41011 MS.gene77660:intergenic 25.0%
! GACAAATTCAAACTAATGAT+GGG - 7283:40781-40800 MS.gene77660:intergenic 25.0%
! GGACTTGAATATAGAATAAA+AGG - 7283:41630-41649 MS.gene77660:intergenic 25.0%
! GTAACAAACGTTATACAAAT+TGG + 7283:41833-41852 MS.gene77660:intron 25.0%
! TAGGCTAATGAATTATAGTA+TGG + 7283:41321-41340 MS.gene77660:intron 25.0%
! TAGTATAAATGGTATAGTGA+AGG + 7283:42506-42525 MS.gene77660:CDS 25.0%
! TATAGTATGGTATAGATGTT+TGG + 7283:41334-41353 MS.gene77660:intron 25.0%
! TCTACAATGTGTATAATGAT+AGG - 7283:40993-41012 MS.gene77660:intergenic 25.0%
! TCTATTGTTTATCTTACCAT+TGG - 7283:40277-40296 MS.gene77660:intergenic 25.0%
! TGACAAATTCAAACTAATGA+TGG - 7283:40782-40801 MS.gene77660:intergenic 25.0%
! TTTGAATTTGAATGTGCTTA+TGG + 7283:40048-40067 MS.gene77660:CDS 25.0%
!! AAAAATTCCTGATTTGTGAA+TGG + 7283:39404-39423 MS.gene77660:intron 25.0%
!! AGATGAATGCTATTGATTAT+GGG + 7283:39644-39663 MS.gene77660:CDS 25.0%
!! ATGTTCATATGGATGATTTT+TGG + 7283:41244-41263 MS.gene77660:intron 25.0%
!! CAAAGTAGTTGATTCTTTAA+AGG + 7283:39156-39175 MS.gene77660:CDS 25.0%
!! CCAATTTTTCTATCTTTAAG+AGG + 7283:41108-41127 MS.gene77660:intron 25.0%
!! CCTTTAAGTAACAAATTTTG+TGG - 7283:42093-42112 MS.gene77660:intergenic 25.0%
!! CTTTAAAGAATCAACTACTT+TGG - 7283:39158-39177 MS.gene77660:intergenic 25.0%
!! TTCACATTGAATTTTATCCT+TGG + 7283:40210-40229 MS.gene77660:intron 25.0%
!! TTGTATAACGTTTGTTACTT+AGG - 7283:41831-41850 MS.gene77660:intergenic 25.0%
!!! ATCTAAATACTGTTTTGGAT+GGG + 7283:42625-42644 MS.gene77660:CDS 25.0%
!!! CCACAAAATTTGTTACTTAA+AGG + 7283:42090-42109 MS.gene77660:intron 25.0%
!!! GTTATTTTTAGGTTTCGTTT+TGG + 7283:41773-41792 MS.gene77660:intron 25.0%
!!! TACTTTGTTTTTCTTTGTGA+AGG + 7283:42396-42415 MS.gene77660:intron 25.0%
!!! TGTTCCCTTAAGTTATTTTT+AGG + 7283:41762-41781 MS.gene77660:intron 25.0%
AAAAAAGCCATTCACAAATC+AGG - 7283:39414-39433 MS.gene77659:intergenic 30.0%
AAAGTTTAGTTGAAAGCGAT+GGG - 7283:39209-39228 MS.gene77660:intergenic 30.0%
AAATCCATTGATAGGATCAT+AGG + 7283:42318-42337 MS.gene77660:intron 30.0%
AACCATAACTATCTCATACA+GGG - 7283:39342-39361 MS.gene77660:intergenic 30.0%
AAGAAACACATGAAGTAAAC+AGG - 7283:40245-40264 MS.gene77660:intergenic 30.0%
ACAAGTTAGTACATGATGTA+AGG + 7283:42583-42602 MS.gene77660:CDS 30.0%
AGATATCCAAGCTTCTTAAA+GGG + 7283:39725-39744 MS.gene77660:CDS 30.0%
AGGATAAAATTGTGAATCTG+TGG + 7283:42526-42545 MS.gene77660:CDS 30.0%
ATATGACGAATGCAAACTAT+AGG - 7283:41520-41539 MS.gene77660:intergenic 30.0%
ATCTCTTAAGATTTGAGTGT+TGG + 7283:41884-41903 MS.gene77660:intron 30.0%
CCTGCATGTAATGTATAAAA+TGG + 7283:41018-41037 MS.gene77660:intron 30.0%
GAAATAGTAGCAGTCATATA+AGG - 7283:41685-41704 MS.gene77660:intergenic 30.0%
GATGAAACGAAAACAACTTA+AGG - 7283:41861-41880 MS.gene77660:intergenic 30.0%
GCATCTTCACAAATTGTTTA+TGG - 7283:41195-41214 MS.gene77660:intergenic 30.0%
GGATAAAATTGTGAATCTGT+GGG + 7283:42527-42546 MS.gene77660:CDS 30.0%
GTTTATCTTACCATTGGAAA+CGG - 7283:40271-40290 MS.gene77660:intergenic 30.0%
TAACCATAACTATCTCATAC+AGG - 7283:39343-39362 MS.gene77660:intergenic 30.0%
TAAGAAATATTGGTCCTGAT+AGG + 7283:41939-41958 MS.gene77660:intron 30.0%
TAATGATAGGGTATGAAATG+TGG - 7283:40980-40999 MS.gene77660:intergenic 30.0%
TAGTTATGATAGAGAGAAGA+TGG - 7283:40422-40441 MS.gene77660:intergenic 30.0%
TCAATTTCATTTGCAAGTTC+TGG - 7283:41658-41677 MS.gene77660:intergenic 30.0%
TTAATATGAGCTGCAATAAG+AGG - 7283:42660-42679 MS.gene77660:intergenic 30.0%
TTACAATTAGGTAGTACGAA+AGG - 7283:40156-40175 MS.gene77660:intergenic 30.0%
TTATACATTACATGCAGGTT+AGG - 7283:41016-41035 MS.gene77660:intergenic 30.0%
TTGTGCAATTTCTTGCTAAA+AGG - 7283:40720-40739 MS.gene77660:intergenic 30.0%
TTTAAAGGACTTGAGATACA+AGG + 7283:39171-39190 MS.gene77660:CDS 30.0%
! ACAAGGCTAAATTACACTTT+TGG - 7283:42225-42244 MS.gene77660:intergenic 30.0%
! ACATCATGTACTAACTTGTA+CGG - 7283:42582-42601 MS.gene77660:intergenic 30.0%
! ACTGCTACTATTTCCTTTTT+AGG + 7283:41691-41710 MS.gene77660:intron 30.0%
! CCATTTTATACATTACATGC+AGG - 7283:41021-41040 MS.gene77660:intergenic 30.0%
! CTTTCATCTTATTTGCAAAC+TGG - 7283:42431-42450 MS.gene77660:intergenic 30.0%
! GAGATGAATGCTATTGATTA+TGG + 7283:39643-39662 MS.gene77660:CDS 30.0%
! GATTATCTCTGGTGTTAATT+TGG - 7283:42022-42041 MS.gene77660:intergenic 30.0%
! GTCAGATCTAAATACTGTTT+TGG + 7283:42620-42639 MS.gene77660:CDS 30.0%
! GTTAACATTGGAAAGTTTTC+AGG + 7283:40673-40692 MS.gene77660:intron 30.0%
! TAGTCTAGAATTGAATCCTT+AGG + 7283:40749-40768 MS.gene77660:intron 30.0%
!! AAAAGGTGGTTAGTTTGTAA+AGG - 7283:40851-40870 MS.gene77660:intergenic 30.0%
!! AAATTTTGTGGTGTTAGCTT+GGG - 7283:42081-42100 MS.gene77660:intergenic 30.0%
!! GATCTAAATACTGTTTTGGA+TGG + 7283:42624-42643 MS.gene77660:CDS 30.0%
AAAGACAAGGTTATGAAGGA+AGG + 7283:39971-39990 MS.gene77660:CDS 35.0%
AAATATTGGTCCTGATAGGA+AGG + 7283:41943-41962 MS.gene77660:intron 35.0%
AAATGAATCTTCTCAGCTTG+AGG + 7283:40119-40138 MS.gene77660:CDS 35.0%
ATACAAACTCAACTACACCA+TGG - 7283:41717-41736 MS.gene77660:intergenic 35.0%
ATAGCAATTGAACAAGGAGT+TGG + 7283:42483-42502 MS.gene77660:CDS 35.0%
ATATATGCATACCAGAGGAT+TGG - 7283:41561-41580 MS.gene77660:intergenic 35.0%
ATCTGCTTGACATACAACAT+GGG - 7283:39592-39611 MS.gene77660:intergenic 35.0%
ATCTGTGGGAAGAAAAAACT+AGG + 7283:42541-42560 MS.gene77660:CDS 35.0%
CAAGTGATAGCAATTGAACA+AGG + 7283:42477-42496 MS.gene77660:CDS 35.0%
GAAAGTTTAGTTGAAAGCGA+TGG - 7283:39210-39229 MS.gene77660:intergenic 35.0%
GAGATATCCAAGCTTCTTAA+AGG + 7283:39724-39743 MS.gene77660:CDS 35.0%
TAGTCCTATGATCCTATCAA+TGG - 7283:42325-42344 MS.gene77660:intergenic 35.0%
TATCTGCTTGACATACAACA+TGG - 7283:39593-39612 MS.gene77660:intergenic 35.0%
TCAAGCTGAGAAGATTCATT+TGG - 7283:40120-40139 MS.gene77660:intergenic 35.0%
TCTTAAAGGGCCATTTGATA+TGG + 7283:39738-39757 MS.gene77660:CDS 35.0%
TGATTTCCCAGACTAATGTT+TGG + 7283:41084-41103 MS.gene77660:intron 35.0%
TTAGTACATGATGTAAGGAC+TGG + 7283:42588-42607 MS.gene77660:CDS 35.0%
TTCCCTGTATGAGATAGTTA+TGG + 7283:39337-39356 MS.gene77660:intron 35.0%
TTCTGTTCTCCATGAATCAA+GGG - 7283:41484-41503 MS.gene77660:intergenic 35.0%
TTGGATTAAGCAGGAAGAAA+TGG + 7283:39063-39082 MS.gene77660:CDS 35.0%
TTGGTTATAAAAGCTGCTAC+TGG + 7283:39772-39791 MS.gene77660:CDS 35.0%
TTTCTGTTCTCCATGAATCA+AGG - 7283:41485-41504 MS.gene77660:intergenic 35.0%
TTTGTCATAATCCGACAACA+TGG + 7283:40795-40814 MS.gene77660:intron 35.0%
! ACTTGTAACAGTGTTGTTGA+TGG - 7283:41287-41306 MS.gene77660:intergenic 35.0%
! ATCCTATCAATGGATTTGCA+GGG - 7283:42315-42334 MS.gene77660:intergenic 35.0%
! ATCTCTGGTGTTAATTTGGT+GGG - 7283:42018-42037 MS.gene77660:intergenic 35.0%
! ATGTGCTTATGGCTATCTTT+TGG + 7283:40059-40078 MS.gene77660:CDS 35.0%
! GTTTCTTTTTCCGTTTCCAA+TGG + 7283:40258-40277 MS.gene77660:intron 35.0%
! TATCTCTGGTGTTAATTTGG+TGG - 7283:42019-42038 MS.gene77660:intergenic 35.0%
! TCCTTCATAACCTTGTCTTT+TGG - 7283:39971-39990 MS.gene77660:intergenic 35.0%
! TGATCTTGAGATTGATTCTG+AGG + 7283:41441-41460 MS.gene77660:CDS 35.0%
! TGTGCTTATGGCTATCTTTT+GGG + 7283:40060-40079 MS.gene77660:CDS 35.0%
! TTTTGCTTGAATCAAGCTCT+GGG + 7283:39912-39931 MS.gene77660:intron 35.0%
!! ACTATTTCCTTTTTAGGCCA+TGG + 7283:41697-41716 MS.gene77660:intron 35.0%
!! ACTGTTTTGGATGGGAATAT+TGG + 7283:42633-42652 MS.gene77660:CDS 35.0%
!! CAAATTTTGTGGTGTTAGCT+TGG - 7283:42082-42101 MS.gene77660:intergenic 35.0%
!! CAAGGAGTTGGTAGTATAAA+TGG + 7283:42495-42514 MS.gene77660:CDS 35.0%
!!! TAAACAGGTCTAGTTTTCCA+AGG - 7283:40230-40249 MS.gene77660:intergenic 35.0%
AACTACACCATGGCCTAAAA+AGG - 7283:41707-41726 MS.gene77660:intergenic 40.0%
AATAGACGTGAGCAACATAC+TGG + 7283:39693-39712 MS.gene77660:CDS 40.0%
AATTGGGCCAAACATTAGTC+TGG - 7283:41094-41113 MS.gene77660:intergenic 40.0%
ACACATTAGTCCTTCCTATC+AGG - 7283:41956-41975 MS.gene77660:intergenic 40.0%
AGAATGTCGTTGGACTTAGT+TGG - 7283:39115-39134 MS.gene77660:intergenic 40.0%
ATGAAGGAAGGATTGTTGAC+AGG + 7283:39983-40002 MS.gene77660:CDS 40.0%
CAACGACATTCTTGTCAAGT+TGG + 7283:39123-39142 MS.gene77660:CDS 40.0%
CAACTTGACAAGAATGTCGT+TGG - 7283:39125-39144 MS.gene77660:intergenic 40.0%
CAAGATCACGAGATTTCTCT+AGG - 7283:41429-41448 MS.gene77660:intergenic 40.0%
CACAGATATATGCATACCAG+AGG - 7283:41566-41585 MS.gene77660:intergenic 40.0%
CACCAAAAGAACCATGTTGT+CGG - 7283:40809-40828 MS.gene77660:intergenic 40.0%
CATTACATTACGGGTCTGTT+TGG + 7283:39454-39473 MS.gene77660:intron 40.0%
CCTACAAATGTACCTTGGAT+GGG + 7283:39945-39964 MS.gene77660:CDS 40.0%
GAATGTCGTTGGACTTAGTT+GGG - 7283:39114-39133 MS.gene77660:intergenic 40.0%
GCATTCGTCATATACCTACT+GGG + 7283:41527-41546 MS.gene77660:CDS 40.0%
GCCAAAAGACAAGGTTATGA+AGG + 7283:39967-39986 MS.gene77660:CDS 40.0%
GGGAAATCATGCTCTTAACA+TGG - 7283:41073-41092 MS.gene77660:intergenic 40.0%
GTTGTATGTCAAGCAGATAG+AGG + 7283:39594-39613 MS.gene77660:intron 40.0%
TCCTACAAATGTACCTTGGA+TGG + 7283:39944-39963 MS.gene77660:CDS 40.0%
TGATGGCAGAATATGGAAGA+AGG - 7283:41270-41289 MS.gene77660:intergenic 40.0%
TGCAGGGAATGTAGTTAAGA+AGG - 7283:42299-42318 MS.gene77660:intergenic 40.0%
TGCATTCGTCATATACCTAC+TGG + 7283:41526-41545 MS.gene77660:CDS 40.0%
TGTGGGAAGAAAAAACTAGG+AGG + 7283:42544-42563 MS.gene77660:CDS 40.0%
TTCCCTGCAAATCCATTGAT+AGG + 7283:42310-42329 MS.gene77660:intron 40.0%
! AAATGGCCCTTTAAGAAGCT+TGG - 7283:39734-39753 MS.gene77660:intergenic 40.0%
! AGAAGCAAGTTGGATTAAGC+AGG + 7283:39054-39073 MS.gene77660:CDS 40.0%
! ATCCGACAACATGGTTCTTT+TGG + 7283:40804-40823 MS.gene77660:intron 40.0%
! ATTGGGCCAAACATTAGTCT+GGG - 7283:41093-41112 MS.gene77660:intergenic 40.0%
! CATTTGCAAGTTCTGGCAAA+TGG - 7283:41651-41670 MS.gene77660:intergenic 40.0%
! CGAGATTTCTCTAGGAACAA+CGG - 7283:41421-41440 MS.gene77660:intergenic 40.0%
! CTTTTGCTTGAATCAAGCTC+TGG + 7283:39911-39930 MS.gene77660:intron 40.0%
! GATCCTATCAATGGATTTGC+AGG - 7283:42316-42335 MS.gene77660:intergenic 40.0%
! GGCAGTGTAGTGTTGTTAAA+TGG + 7283:41129-41148 MS.gene77660:intron 40.0%
! GTGCTTATGGCTATCTTTTG+GGG + 7283:40061-40080 MS.gene77660:CDS 40.0%
! TGCTACTGGCATCTTTTCAA+AGG + 7283:39786-39805 MS.gene77660:CDS 40.0%
! TGCTTATGGCTATCTTTTGG+GGG + 7283:40062-40081 MS.gene77660:CDS 40.0%
!! GATTTGAGTGTTGGACACTT+TGG + 7283:41893-41912 MS.gene77660:intron 40.0%
!! GTGTTGTTGATGGCAGAATA+TGG - 7283:41277-41296 MS.gene77660:intergenic 40.0%
!! TTCAAACTAATGATGGGCTG+TGG - 7283:40775-40794 MS.gene77660:intergenic 40.0%
AAAGGGCCATTTGATATGGC+AGG + 7283:39742-39761 MS.gene77660:CDS 45.0%
AAGGAGTTCACCACCTCATA+AGG + 7283:40088-40107 MS.gene77660:CDS 45.0%
AATACGTTGGCAGAAACCCA+TGG + 7283:40942-40961 MS.gene77660:intron 45.0%
AGGAGTTCACCACCTCATAA+GGG + 7283:40089-40108 MS.gene77660:CDS 45.0%
AGGTGTTTGATCGAGAATGG+AGG + 7283:40003-40022 MS.gene77660:CDS 45.0%
ATCTCGTCTCCCTTGATTCA+TGG + 7283:41472-41491 MS.gene77660:CDS 45.0%
ATTTGTGAAGATGCCCACCA+TGG + 7283:41201-41220 MS.gene77660:intron 45.0%
CAGCTCCTACAAATGTACCT+TGG + 7283:39940-39959 MS.gene77660:CDS 45.0%
CATCCATATGAACATCCCAG+CGG - 7283:41239-41258 MS.gene77660:intergenic 45.0%
CATGCTCCTGCCATATCAAA+TGG - 7283:39751-39770 MS.gene77660:intergenic 45.0%
CATTTGGAGAACCCCTTATG+AGG - 7283:40104-40123 MS.gene77660:intergenic 45.0%
CCCATCCAAGGTACATTTGT+AGG - 7283:39948-39967 MS.gene77660:intergenic 45.0%
GAAACCCATGGTGAAGAGAA+AGG + 7283:40954-40973 MS.gene77660:intron 45.0%
GACAGGTGTTTGATCGAGAA+TGG + 7283:40000-40019 MS.gene77660:CDS 45.0%
GATTGGACAGTTATCCCAGT+AGG - 7283:41544-41563 MS.gene77660:intergenic 45.0%
GGTACGTGATTCAGATCTGT+GGG + 7283:39084-39103 MS.gene77660:CDS 45.0%
GTCTCAGGTTCGATTATCTC+TGG - 7283:42033-42052 MS.gene77660:intergenic 45.0%
TGGTACGTGATTCAGATCTG+TGG + 7283:39083-39102 MS.gene77660:CDS 45.0%
TTGGAGTATGCTCCTTCTCA+AGG - 7283:42055-42074 MS.gene77660:intergenic 45.0%
TTGTTAAATGGCCGCTAAGG+AGG + 7283:41141-41160 MS.gene77660:intron 45.0%
! CGACAACATGGTTCTTTTGG+TGG + 7283:40807-40826 MS.gene77660:intron 45.0%
! GTGTTGTTAAATGGCCGCTA+AGG + 7283:41138-41157 MS.gene77660:intron 45.0%
! TGATATGGCAGGAGCATGTT+TGG + 7283:39753-39772 MS.gene77660:CDS 45.0%
! TTGAGAAGGAGCATACTCCA+AGG + 7283:42054-42073 MS.gene77660:intron 45.0%
!! GGCTATCTTTTGGGGGAAAA+AGG + 7283:40069-40088 MS.gene77660:CDS 45.0%
!! AAATAAATATTAAGAAATAT+TGG + 7283:41929-41948 MS.gene77660:intron 5.0%
AAATGGCCGCTAAGGAGGAA+TGG + 7283:41146-41165 MS.gene77660:intron 50.0%
ATGCTCCTTCTCAAGGTCTC+AGG - 7283:42048-42067 MS.gene77660:intergenic 50.0%
CTTGGATGGGCCAAAAGACA+AGG + 7283:39958-39977 MS.gene77660:CDS 50.0%
GGAGTTCACCACCTCATAAG+GGG + 7283:40090-40109 MS.gene77660:CDS 50.0%
GGGATAACTGTCCAATCCTC+TGG + 7283:41547-41566 MS.gene77660:CDS 50.0%
GTGGCCTTTCTCTTCACCAT+GGG - 7283:40961-40980 MS.gene77660:intergenic 50.0%
TCGAACCTGAGACCTTGAGA+AGG + 7283:42040-42059 MS.gene77660:intron 50.0%
TGTGGCCTTTCTCTTCACCA+TGG - 7283:40962-40981 MS.gene77660:intergenic 50.0%
TTGGAGAACCCCTTATGAGG+TGG - 7283:40101-40120 MS.gene77660:intergenic 50.0%
! CTTGTCTTTTGGCCCATCCA+AGG - 7283:39960-39979 MS.gene77660:intergenic 50.0%
!! TAATGATGGGCTGTGGCCTA+AGG - 7283:40768-40787 MS.gene77660:intergenic 50.0%
AGGCCGCTGGGATGTTCATA+TGG + 7283:41233-41252 MS.gene77660:intron 55.0%
ATGAACATCCCAGCGGCCTA+TGG - 7283:41232-41251 MS.gene77660:intergenic 55.0%
GTCGCACCATTCCTCCTTAG+CGG - 7283:41155-41174 MS.gene77660:intergenic 55.0%
TGTGAAGATGCCCACCATGG+TGG + 7283:41204-41223 MS.gene77660:intron 55.0%
! GTGGTGTTAGCTTGGGACCT+TGG - 7283:42074-42093 MS.gene77660:intergenic 55.0%
GCCTATGGCACCACCATGGT+GGG - 7283:41217-41236 MS.gene77660:intergenic 60.0%
AGCGGCCTATGGCACCACCA+TGG - 7283:41221-41240 MS.gene77660:intergenic 65.0%
GGCCTATGGCACCACCATGG+TGG - 7283:41218-41237 MS.gene77660:intergenic 65.0%
!! ATGGTGGTGCCATAGGCCGC+TGG + 7283:41220-41239 MS.gene77660:intron 65.0%
!! GCCCACCATGGTGGTGCCAT+AGG + 7283:41213-41232 MS.gene77660:intron 65.0%
!! TGGTGGTGCCATAGGCCGCT+GGG + 7283:41221-41240 MS.gene77660:intron 65.0%


Chromosome Type Strat End Strand Name
7283 gene 39049 42692 39049 ID=MS.gene77660
7283 mRNA 39049 42692 39049 ID=MS.gene77660.t1;Parent=MS.gene77660
7283 exon 39049 39192 39049 ID=MS.gene77660.t1.exon1;Parent=MS.gene77660.t1
7283 CDS 39049 39192 39049 ID=cds.MS.gene77660.t1;Parent=MS.gene77660.t1
7283 exon 39610 39807 39610 ID=MS.gene77660.t1.exon2;Parent=MS.gene77660.t1
7283 CDS 39610 39807 39610 ID=cds.MS.gene77660.t1;Parent=MS.gene77660.t1
7283 exon 39928 40140 39928 ID=MS.gene77660.t1.exon3;Parent=MS.gene77660.t1
7283 CDS 39928 40140 39928 ID=cds.MS.gene77660.t1;Parent=MS.gene77660.t1
7283 exon 41391 41568 41391 ID=MS.gene77660.t1.exon4;Parent=MS.gene77660.t1
7283 CDS 41391 41568 41391 ID=cds.MS.gene77660.t1;Parent=MS.gene77660.t1
7283 exon 42418 42692 42418 ID=MS.gene77660.t1.exon5;Parent=MS.gene77660.t1
7283 CDS 42418 42692 42418 ID=cds.MS.gene77660.t1;Parent=MS.gene77660.t1
Gene Sequence

>MS.gene77660

ATGGAAGAAGCAAGTTGGATTAAGCAGGAAGAAATGGTACGTGATTCAGATCTGTGGGATGACCCAACTAAGTCCAACGACATTCTTGTCAAGTTGGCTAACAGTGCCAAAGTAGTTGATTCTTTAAAGGACTTGAGATACAAGGTTATATTCTGTTCCCATCGCTTTCAACTAAACTTTCACAATGCCTATTATTTATTTTCACTTCTGTGTAAAATTTGATCTGTTTGATGATGAACAAAACGAAATGCAGCAATTATATCAGAGAAAGAAGAGTACAAATGATAGTTCCCTGTATGAGATAGTTATGGTTATGATATTTAGTTAGACTAGATAGATGCACTTTAAAGCTCAGAAAAATTCCTGATTTGTGAATGGCTTTTTTTTTCGTTCAATAAGAATTTACATTACATTACGGGTCTGTTTGGATTGACATATTTGAGTTTGTTTATAAACGTGCATGTATTGCATGTCATGCCAAATTATTATTATTTTTTAATTTTTTTTCCCCTTTTTCATTTTATATGAAAAAAATGTAATCCCATGTTGTATGTCAAGCAGATAGAGGAAGCACAGCTGATCAAGCAGTTAGCTGAGATGAATGCTATTGATTATGGGCTCTATAAACAAGCATATGATGCATCAATAGACGTGAGCAACATACTGGATCAGTATGAGATATCCAAGCTTCTTAAAGGGCCATTTGATATGGCAGGAGCATGTTTGGTTATAAAAGCTGCTACTGGCATCTTTTCAAAGGTTTCATATATAAAGAATTTTGTTGTTGCCGCTGCTATTTTTTTTATTCATATAATAAACCTATATTTCATATTAGTCTTTGTAAAACTGAGTTGCTGACATGCTTTTGCTTGAATCAAGCTCTGGGCAGAACAGCTCCTACAAATGTACCTTGGATGGGCCAAAAGACAAGGTTATGAAGGAAGGATTGTTGACAGGTGTTTGATCGAGAATGGAGGAATCAATTCAGCAACTATAGAGTTTGAATTTGAATGTGCTTATGGCTATCTTTTGGGGGAAAAAGGAGTTCACCACCTCATAAGGGGTTCTCCAAATGAATCTTCTCAGCTTGAGGTGCAAACAGTTCCTTTCGTACTACCTAATTGTAAAACTGATTTTTCGTTCTTGTTCAATTGTGTTATTTTCACATTGAATTTTATCCTTGGAAAACTAGACCTGTTTACTTCATGTGTTTCTTTTTCCGTTTCCAATGGTAAGATAAACAATAGAGAATGTATTACGAAAGTTTTTGAAAATGTATTTGACATGATAGATCCAATATATCTGAAAAATCCAAAAAATGTCAAAAAAAATTTCAGTTTTTCCGGAAATACATTGTCTTTAATTAGCATCCATCTTCTCTCTATCATAACTAAAATGAAAAATACAAATTAAAATTGAAAATGATATTTGAAACTGATTTTAGAAAGCAAACAGACAATACTCTTGTGTAGAAAGATATTCTAATTTCTTTTCTCGAGAGTTTAATTCCGATTTCAATACATCACATTTGCTGAGATATAAGTGCTTTAGCTGCTTTGTGCTGATAATATTGTCTTTCTGTAGAAAGTTCCATAAGTTAAACAACAATTACAGATCTTAATAGGTTAACATTGGAAAGTTTTCAGGCTGTTCAATTTTTCTTTTGATCCTTTTAGCAAGAAATTGCACAAGCTTCTGACTAGTCTAGAATTGAATCCTTAGGCCACAGCCCATCATTAGTTTGAATTTGTCATAATCCGACAACATGGTTCTTTTGGTGGAGCAAGTTTTCTGAATTGCCTTTACAAACTAACCACCTTTTTGAGTAAATTCAATTTCGTACTAGTATCAGATACAGTTCAAAACATATATAGGAAATGAACATTTCTTTACAATACGTTGGCAGAAACCCATGGTGAAGAGAAAGGCCACATTTCATACCCTATCATTATACACATTGTAGACCTAACCTGCATGTAATGTATAAAATGGCTTGTTGAATTTTATAACTAACTAGATGTCCATGTTAAGAGCATGATTTCCCAGACTAATGTTTGGCCCAATTTTTCTATCTTTAAGAGGCAGTGTAGTGTTGTTAAATGGCCGCTAAGGAGGAATGGTGCGACGTTTTTCTTTAGAGATTCCATAAACAATTTGTGAAGATGCCCACCATGGTGGTGCCATAGGCCGCTGGGATGTTCATATGGATGATTTTTGGCCTTCTTCCATATTCTGCCATCAACAACACTGTTACAAGTTTTTTAAGTGTTTTTAGGCTAATGAATTATAGTATGGTATAGATGTTTGGTGAAATAATTGTGTGCTAATTTCAAAATTTGCAGACTAGCACTGCAACTGTTGATGTTATTCCGTTGTTCCTAGAGAAATCTCGTGATCTTGAGATTGATTCTGAGGATTTGATTATCTCGTCTCCCTTGATTCATGGAGAACAGAAAAGACAGACTCAGCCTATAGTTTGCATTCGTCATATACCTACTGGGATAACTGTCCAATCCTCTGGTATGCATATATCTGTGTTAAAATGTTTGCTTATTTTGTCTTTATCTAATTTCTTATTCCTTTTATTCTATATTCAAGTCCATTTGCCAGAACTTGCAAATGAAATTGATATGCCTTATATGACTGCTACTATTTCCTTTTTAGGCCATGGTGTAGTTGAGTTTGTATTTATATTAAGGTTAAATTACACTTTTGTTCCCTTAAGTTATTTTTAGGTTTCGTTTTGGTCTCTTAAGTCTGTTTTGTTTCACGTTAGTCTCCTAAGTAACAAACGTTATACAAATTGGTCCCTTAAGTTGTTTTCGTTTCATCTTAATCTCTTAAGATTTGAGTGTTGGACACTTTGGCATCTTAAGTTATAAATAAATATTAAGAAATATTGGTCCTGATAGGAAGGACTAATGTGTTTAAAGTTTGTTATTTTTTTTTTTAAGAAGCTAAACTATCCCACCAAATTAACACCAGAGATAATCGAACCTGAGACCTTGAGAAGGAGCATACTCCAAGGTCCCAAGCTAACACCACAAAATTTGTTACTTAAAGGATCAAAGTATCAAATTTTAGTAAGTGACCAAAATGAAACAAGAAAACTTAAAGGACCAATAATGTTTGTAATTTAAGGGACCAAAATGAAATAAAATTAACTTAAGAGACCAAAAGTGTAATTTAGCCTTGTATTAATTTCACTCATATGTGAAATAAACTAATTTTTTTTTGCTCATAATTTCCTTCTTAACTACATTCCCTGCAAATCCATTGATAGGATCATAGGACTAAATAATTACAAGTCCTTTTTTTTTTTAAATGAGAATTTTACTGAATTACAATACTTTGTTTTTCTTTGTGAAGGTGAGAGAAGCCAGTTTGCAAATAAGATGAAAGCACTAAACAGATTGAAAGCTAAACTTCAAGTGATAGCAATTGAACAAGGAGTTGGTAGTATAAATGGTATAGTGAAGGATAAAATTGTGAATCTGTGGGAAGAAAAAACTAGGAGGTATATATCTCATCCGTACAAGTTAGTACATGATGTAAGGACTGGCATTGAGATGTCAGATCTAAATACTGTTTTGGATGGGAATATTGGACCTCTTATTGCAGCTCATATTAATACTAGAGAGTAA

Protein sequence

>MS.gene77660.t1

MEEASWIKQEEMVRDSDLWDDPTKSNDILVKLANSAKVVDSLKDLRYKIEEAQLIKQLAEMNAIDYGLYKQAYDASIDVSNILDQYEISKLLKGPFDMAGACLVIKAATGIFSKLWAEQLLQMYLGWAKRQGYEGRIVDRCLIENGGINSATIEFEFECAYGYLLGEKGVHHLIRGSPNESSQLETSTATVDVIPLFLEKSRDLEIDSEDLIISSPLIHGEQKRQTQPIVCIRHIPTGITVQSSGERSQFANKMKALNRLKAKLQVIAIEQGVGSINGIVKDKIVNLWEEKTRRYISHPYKLVHDVRTGIEMSDLNTVLDGNIGPLIAAHINTRE