Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38339.t1 | AFK33519.1 | 92.7 | 232 | 17 | 0 | 1 | 232 | 1 | 232 | 6.70E-113 | 416.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38339.t1 | I3RZS7 | 92.7 | 232 | 17 | 0 | 1 | 232 | 1 | 232 | 4.8e-113 | 416.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049149 | MS.gene38339 | 0.812168 | 4.86E-51 | -1.69E-46 |
| MS.gene049150 | MS.gene38339 | 0.819788 | 9.66E-53 | -1.69E-46 |
| MS.gene049153 | MS.gene38339 | 0.826275 | 2.97E-54 | -1.69E-46 |
| MS.gene049260 | MS.gene38339 | 0.805653 | 1.20E-49 | -1.69E-46 |
| MS.gene04933 | MS.gene38339 | 0.808603 | 2.86E-50 | -1.69E-46 |
| MS.gene049346 | MS.gene38339 | 0.843431 | 1.41E-58 | -1.69E-46 |
| MS.gene049351 | MS.gene38339 | 0.814211 | 1.73E-51 | -1.69E-46 |
| MS.gene049758 | MS.gene38339 | 0.854354 | 1.30E-61 | -1.69E-46 |
| MS.gene049910 | MS.gene38339 | 0.828278 | 9.82E-55 | -1.69E-46 |
| MS.gene050301 | MS.gene38339 | 0.872759 | 2.48E-67 | -1.69E-46 |
| MS.gene050330 | MS.gene38339 | -0.829282 | 5.62E-55 | -1.69E-46 |
| MS.gene050397 | MS.gene38339 | 0.837752 | 4.32E-57 | -1.69E-46 |
| MS.gene050426 | MS.gene38339 | -0.833644 | 4.74E-56 | -1.69E-46 |
| MS.gene050464 | MS.gene38339 | 0.835576 | 1.55E-56 | -1.69E-46 |
| MS.gene050529 | MS.gene38339 | 0.826632 | 2.44E-54 | -1.69E-46 |
| MS.gene050558 | MS.gene38339 | 0.845677 | 3.50E-59 | -1.69E-46 |
| MS.gene050560 | MS.gene38339 | 0.808174 | 3.53E-50 | -1.69E-46 |
| MS.gene050642 | MS.gene38339 | 0.829909 | 3.95E-55 | -1.69E-46 |
| MS.gene050650 | MS.gene38339 | 0.818564 | 1.84E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene38339 | 0.840173 | 1.02E-57 | -1.69E-46 |
| MS.gene050820 | MS.gene38339 | 0.831553 | 1.56E-55 | -1.69E-46 |
| MS.gene05101 | MS.gene38339 | 0.820576 | 6.38E-53 | -1.69E-46 |
| MS.gene05119 | MS.gene38339 | -0.817582 | 3.06E-52 | -1.69E-46 |
| MS.gene051525 | MS.gene38339 | 0.847792 | 9.24E-60 | -1.69E-46 |
| MS.gene051582 | MS.gene38339 | 0.873738 | 1.17E-67 | -1.69E-46 |
| MS.gene051860 | MS.gene38339 | 0.842386 | 2.67E-58 | -1.69E-46 |
| MS.gene051983 | MS.gene38339 | 0.842825 | 2.04E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene38339 | -0.86779 | 1.06E-65 | -1.69E-46 |
| MS.gene052077 | MS.gene38339 | 0.837429 | 5.23E-57 | -1.69E-46 |
| MS.gene052078 | MS.gene38339 | 0.810923 | 9.05E-51 | -1.69E-46 |
| MS.gene052176 | MS.gene38339 | 0.810626 | 1.05E-50 | -1.69E-46 |
| MS.gene052188 | MS.gene38339 | 0.838266 | 3.18E-57 | -1.69E-46 |
| MS.gene052207 | MS.gene38339 | 0.800858 | 1.18E-48 | -1.69E-46 |
| MS.gene052253 | MS.gene38339 | 0.870189 | 1.76E-66 | -1.69E-46 |
| MS.gene052255 | MS.gene38339 | 0.811427 | 7.04E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene38339 | 0.821765 | 3.39E-53 | -1.69E-46 |
| MS.gene052340 | MS.gene38339 | 0.845407 | 4.14E-59 | -1.69E-46 |
| MS.gene052481 | MS.gene38339 | 0.81031 | 1.23E-50 | -1.69E-46 |
| MS.gene052485 | MS.gene38339 | 0.815345 | 9.70E-52 | -1.69E-46 |
| MS.gene053209 | MS.gene38339 | 0.841013 | 6.15E-58 | -1.69E-46 |
| MS.gene053330 | MS.gene38339 | 0.835291 | 1.83E-56 | -1.69E-46 |
| MS.gene053557 | MS.gene38339 | 0.807605 | 4.66E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene38339 | 0.88248 | 1.01E-70 | -1.69E-46 |
| MS.gene053907 | MS.gene38339 | 0.831493 | 1.62E-55 | -1.69E-46 |
| MS.gene053928 | MS.gene38339 | 0.82622 | 3.06E-54 | -1.69E-46 |
| MS.gene054183 | MS.gene38339 | 0.847192 | 1.35E-59 | -1.69E-46 |
| MS.gene054473 | MS.gene38339 | 0.832178 | 1.10E-55 | -1.69E-46 |
| MS.gene054556 | MS.gene38339 | 0.823685 | 1.21E-53 | -1.69E-46 |
| MS.gene054719 | MS.gene38339 | 0.815082 | 1.11E-51 | -1.69E-46 |
| MS.gene054930 | MS.gene38339 | 0.823347 | 1.45E-53 | -1.69E-46 |
| MS.gene054942 | MS.gene38339 | 0.804656 | 1.95E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene38339 | 0.847354 | 1.22E-59 | -1.69E-46 |
| MS.gene055116 | MS.gene38339 | 0.846088 | 2.71E-59 | -1.69E-46 |
| MS.gene055277 | MS.gene38339 | 0.832671 | 8.28E-56 | -1.69E-46 |
| MS.gene055369 | MS.gene38339 | 0.814081 | 1.85E-51 | -1.69E-46 |
| MS.gene055390 | MS.gene38339 | 0.815477 | 9.06E-52 | -1.69E-46 |
| MS.gene055422 | MS.gene38339 | 0.831292 | 1.81E-55 | -1.69E-46 |
| MS.gene055428 | MS.gene38339 | 0.836379 | 9.69E-57 | -1.69E-46 |
| MS.gene05553 | MS.gene38339 | 0.878859 | 2.00E-69 | -1.69E-46 |
| MS.gene055564 | MS.gene38339 | 0.851319 | 9.59E-61 | -1.69E-46 |
| MS.gene055604 | MS.gene38339 | 0.836434 | 9.38E-57 | -1.69E-46 |
| MS.gene055712 | MS.gene38339 | 0.810543 | 1.09E-50 | -1.69E-46 |
| MS.gene055859 | MS.gene38339 | 0.802492 | 5.47E-49 | -1.69E-46 |
| MS.gene05594 | MS.gene38339 | 0.805897 | 1.07E-49 | -1.69E-46 |
| MS.gene056191 | MS.gene38339 | 0.80164 | 8.19E-49 | -1.69E-46 |
| MS.gene056407 | MS.gene38339 | 0.828792 | 7.38E-55 | -1.69E-46 |
| MS.gene056451 | MS.gene38339 | 0.806331 | 8.66E-50 | -1.69E-46 |
| MS.gene056612 | MS.gene38339 | 0.84158 | 4.36E-58 | -1.69E-46 |
| MS.gene056659 | MS.gene38339 | 0.829057 | 6.37E-55 | -1.69E-46 |
| MS.gene056723 | MS.gene38339 | 0.862293 | 5.61E-64 | -1.69E-46 |
| MS.gene056796 | MS.gene38339 | 0.804177 | 2.45E-49 | -1.69E-46 |
| MS.gene056846 | MS.gene38339 | 0.804189 | 2.43E-49 | -1.69E-46 |
| MS.gene056899 | MS.gene38339 | -0.805776 | 1.13E-49 | -1.69E-46 |
| MS.gene056979 | MS.gene38339 | 0.843491 | 1.36E-58 | -1.69E-46 |
| MS.gene05702 | MS.gene38339 | 0.836924 | 7.03E-57 | -1.69E-46 |
| MS.gene057121 | MS.gene38339 | 0.889708 | 1.90E-73 | -1.69E-46 |
| MS.gene057124 | MS.gene38339 | 0.850351 | 1.80E-60 | -1.69E-46 |
| MS.gene057245 | MS.gene38339 | 0.809794 | 1.59E-50 | -1.69E-46 |
| MS.gene057396 | MS.gene38339 | 0.808958 | 2.40E-50 | -1.69E-46 |
| MS.gene057448 | MS.gene38339 | 0.822445 | 2.36E-53 | -1.69E-46 |
| MS.gene057449 | MS.gene38339 | 0.805392 | 1.37E-49 | -1.69E-46 |
| MS.gene057450 | MS.gene38339 | 0.817961 | 2.51E-52 | -1.69E-46 |
| MS.gene057469 | MS.gene38339 | 0.827506 | 1.51E-54 | -1.69E-46 |
| MS.gene057476 | MS.gene38339 | 0.824535 | 7.66E-54 | -1.69E-46 |
| MS.gene057749 | MS.gene38339 | 0.810743 | 9.91E-51 | -1.69E-46 |
| MS.gene058002 | MS.gene38339 | 0.882918 | 6.96E-71 | -1.69E-46 |
| MS.gene05811 | MS.gene38339 | 0.861683 | 8.64E-64 | -1.69E-46 |
| MS.gene058142 | MS.gene38339 | 0.875891 | 2.15E-68 | -1.69E-46 |
| MS.gene058233 | MS.gene38339 | 0.853376 | 2.49E-61 | -1.69E-46 |
| MS.gene058276 | MS.gene38339 | 0.853661 | 2.06E-61 | -1.69E-46 |
| MS.gene058365 | MS.gene38339 | 0.803422 | 3.51E-49 | -1.69E-46 |
| MS.gene05842 | MS.gene38339 | 0.827725 | 1.33E-54 | -1.69E-46 |
| MS.gene058660 | MS.gene38339 | 0.809995 | 1.44E-50 | -1.69E-46 |
| MS.gene058700 | MS.gene38339 | 0.80467 | 1.93E-49 | -1.69E-46 |
| MS.gene058710 | MS.gene38339 | 0.850464 | 1.67E-60 | -1.69E-46 |
| MS.gene058739 | MS.gene38339 | 0.820902 | 5.37E-53 | -1.69E-46 |
| MS.gene058746 | MS.gene38339 | 0.805424 | 1.34E-49 | -1.69E-46 |
| MS.gene058749 | MS.gene38339 | 0.812716 | 3.69E-51 | -1.69E-46 |
| MS.gene058833 | MS.gene38339 | 0.80768 | 4.49E-50 | -1.69E-46 |
| MS.gene058845 | MS.gene38339 | 0.81695 | 4.25E-52 | -1.69E-46 |
| MS.gene05886 | MS.gene38339 | 0.881836 | 1.72E-70 | -1.69E-46 |
| MS.gene059011 | MS.gene38339 | 0.809093 | 2.24E-50 | -1.69E-46 |
| MS.gene05907 | MS.gene38339 | 0.867439 | 1.37E-65 | -1.69E-46 |
| MS.gene059141 | MS.gene38339 | 0.816959 | 4.23E-52 | -1.69E-46 |
| MS.gene059247 | MS.gene38339 | 0.838751 | 2.39E-57 | -1.69E-46 |
| MS.gene059285 | MS.gene38339 | 0.80355 | 3.30E-49 | -1.69E-46 |
| MS.gene059420 | MS.gene38339 | 0.857066 | 2.10E-62 | -1.69E-46 |
| MS.gene059462 | MS.gene38339 | 0.800371 | 1.49E-48 | -1.69E-46 |
| MS.gene059518 | MS.gene38339 | 0.840269 | 9.62E-58 | -1.69E-46 |
| MS.gene059676 | MS.gene38339 | 0.804813 | 1.80E-49 | -1.69E-46 |
| MS.gene059688 | MS.gene38339 | 0.832914 | 7.20E-56 | -1.69E-46 |
| MS.gene059692 | MS.gene38339 | 0.836739 | 7.84E-57 | -1.69E-46 |
| MS.gene059695 | MS.gene38339 | 0.836079 | 1.15E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene38339 | 0.869578 | 2.79E-66 | -1.69E-46 |
| MS.gene059894 | MS.gene38339 | 0.839332 | 1.69E-57 | -1.69E-46 |
| MS.gene060403 | MS.gene38339 | 0.811371 | 7.24E-51 | -1.69E-46 |
| MS.gene060407 | MS.gene38339 | 0.83366 | 4.69E-56 | -1.69E-46 |
| MS.gene060986 | MS.gene38339 | 0.809232 | 2.09E-50 | -1.69E-46 |
| MS.gene060994 | MS.gene38339 | 0.804577 | 2.02E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene38339 | 0.862274 | 5.69E-64 | -1.69E-46 |
| MS.gene061114 | MS.gene38339 | -0.831326 | 1.78E-55 | -1.69E-46 |
| MS.gene061154 | MS.gene38339 | 0.833667 | 4.67E-56 | -1.69E-46 |
| MS.gene061159 | MS.gene38339 | 0.843759 | 1.15E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38339.t1 | MTR_7g045270 | 78.899 | 109 | 20 | 1 | 1 | 106 | 1 | 109 | 5.22e-58 | 179 |
| MS.gene38339.t1 | MTR_4g036465 | 31.604 | 212 | 114 | 5 | 46 | 229 | 66 | 274 | 2.36e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38339.t1 | AT4G25170 | 27.679 | 224 | 118 | 5 | 47 | 226 | 118 | 341 | 1.39e-22 | 94.4 |
| MS.gene38339.t1 | AT4G25170 | 25.941 | 239 | 118 | 5 | 47 | 226 | 118 | 356 | 1.97e-20 | 89.0 |
| MS.gene38339.t1 | AT5G61490 | 30.412 | 194 | 113 | 5 | 47 | 226 | 70 | 255 | 2.17e-16 | 76.3 |
Find 37 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGGAGTTGCCTGATTC+AGG | 0.234726 | 7.3:-57414422 | MS.gene38339:intron |
| GCAAGCTGATCCTGCTGTTC+AGG | 0.270311 | 7.3:-57414910 | MS.gene38339:intron |
| TAGCCATGATTACAATTAAA+AGG | 0.291956 | 7.3:+57413844 | None:intergenic |
| TGTGTTGCAGCAAAGGCTTC+TGG | 0.299635 | 7.3:-57414438 | MS.gene38339:CDS |
| TTATCTTCTTGTTGCTGTAA+TGG | 0.335551 | 7.3:-57415778 | MS.gene38339:CDS |
| ATCATCTGATGAAGCCATTT+GGG | 0.369589 | 7.3:-57414477 | MS.gene38339:CDS |
| TGCAATCTCAAGGATATAAT+AGG | 0.380708 | 7.3:-57414956 | MS.gene38339:CDS |
| TATCATCTGATGAAGCCATT+TGG | 0.380798 | 7.3:-57414478 | MS.gene38339:CDS |
| ACTCTTATGATTATGATTCA+AGG | 0.400681 | 7.3:-57414983 | MS.gene38339:CDS |
| GTAAAATACAGACCTGAATC+AGG | 0.413501 | 7.3:+57414410 | None:intergenic |
| TCAGCGTAGAAATCTTAAAC+TGG | 0.444519 | 7.3:-57414025 | MS.gene38339:CDS |
| TGACACTGTTCCATCTCAAA+TGG | 0.457616 | 7.3:-57415698 | MS.gene38339:CDS |
| CATTATCAATCCCAGGGGAC+TGG | 0.459985 | 7.3:+57413931 | None:intergenic |
| CCTGGGATTGATAATGCAAC+AGG | 0.460382 | 7.3:-57413924 | MS.gene38339:CDS |
| AATGATTTATTCCAGTCCCC+TGG | 0.471686 | 7.3:-57413942 | MS.gene38339:CDS |
| TATCATGAAAGGAAAAGTCT+TGG | 0.473359 | 7.3:-57413994 | MS.gene38339:CDS |
| ATTACAGCAACAAGAAGATA+AGG | 0.483282 | 7.3:+57415780 | None:intergenic |
| AAGAGAGAAACCTGAACAGC+AGG | 0.493868 | 7.3:+57414900 | None:intergenic |
| TAAGAAATGTGTTGCAGCAA+AGG | 0.518969 | 7.3:-57414445 | MS.gene38339:CDS |
| TCCTCAACTTCCATTTGAGA+TGG | 0.521148 | 7.3:+57415688 | None:intergenic |
| GATGGAACAGTGTCAAATAC+AGG | 0.521605 | 7.3:+57415706 | None:intergenic |
| TCTTATGACAGCATCCCAAA+TGG | 0.524517 | 7.3:+57414463 | None:intergenic |
| AGAAAACAAGAGATAACATC+AGG | 0.536095 | 7.3:-57415745 | MS.gene38339:CDS |
| ATGATTTATTCCAGTCCCCT+GGG | 0.537176 | 7.3:-57413941 | MS.gene38339:CDS |
| CCTGTTGCATTATCAATCCC+AGG | 0.540379 | 7.3:+57413924 | None:intergenic |
| TCAAGGATTGTGCAATCTCA+AGG | 0.559981 | 7.3:-57414966 | MS.gene38339:CDS |
| CATCATTCATCAATGGGAGG+TGG | 0.560723 | 7.3:-57415853 | None:intergenic |
| TACAATTAAAAGGATAACAA+TGG | 0.569576 | 7.3:+57413854 | None:intergenic |
| TCCATCTCAAATGGAAGTTG+AGG | 0.577676 | 7.3:-57415689 | MS.gene38339:CDS |
| AACAGGTGATACATCACAGT+TGG | 0.603158 | 7.3:-57413907 | MS.gene38339:CDS |
| CTGTTGCATTATCAATCCCA+GGG | 0.603976 | 7.3:+57413925 | None:intergenic |
| GATCTGTTGATCTATGATTG+TGG | 0.615202 | 7.3:+57415010 | None:intergenic |
| TCTCTTTGTTCTGAACTCTG+AGG | 0.618675 | 7.3:+57414050 | None:intergenic |
| TTATTGGCGTTACTCAACTG+AGG | 0.661229 | 7.3:+57415805 | None:intergenic |
| AAACAAGAGATAACATCAGG+TGG | 0.661795 | 7.3:-57415742 | MS.gene38339:CDS |
| AATCATCATTCATCAATGGG+AGG | 0.669157 | 7.3:-57415856 | None:intergenic |
| TGTTGCATTATCAATCCCAG+GGG | 0.757453 | 7.3:+57413926 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTAAGAAATATAATTAATTT+AGG | - | chr7.3:57414185-57414204 | MS.gene38339:intron | 10.0% |
| !! | TCGTAAAATGAAATATATAA+TGG | - | chr7.3:57415517-57415536 | MS.gene38339:intron | 15.0% |
| !! | AATTTAGTGTAATTATGTGT+TGG | - | chr7.3:57415435-57415454 | MS.gene38339:intron | 20.0% |
| !! | GAACTTTAAATTCAAGAAAA+TGG | - | chr7.3:57414281-57414300 | MS.gene38339:intron | 20.0% |
| !! | TACAATTAAAAGGATAACAA+TGG | + | chr7.3:57415811-57415830 | None:intergenic | 20.0% |
| !!! | GAAAAATAAAAGGAACTTTT+GGG | - | chr7.3:57414259-57414278 | MS.gene38339:intron | 20.0% |
| !!! | TATCCTTTTAATTGTAATCA+TGG | - | chr7.3:57415815-57415834 | MS.gene38339:CDS | 20.0% |
| !!! | TGATTTTCTCAAATTATTAG+CGG | + | chr7.3:57415412-57415431 | None:intergenic | 20.0% |
| !!! | TGGATATTTTATATCATGAA+AGG | - | chr7.3:57415657-57415676 | MS.gene38339:intron | 20.0% |
| !!! | TTAGATGAAATTGTTTGTTT+TGG | - | chr7.3:57414114-57414133 | MS.gene38339:intron | 20.0% |
| !!! | TTCTTAGTGAATATTTCTTT+TGG | + | chr7.3:57415331-57415350 | None:intergenic | 20.0% |
| ! | AAAGAGTAAGAAGTAACATA+AGG | + | chr7.3:57414057-57414076 | None:intergenic | 25.0% |
| ! | AAATATTCACTAAGAAGAGA+AGG | - | chr7.3:57415335-57415354 | MS.gene38339:intron | 25.0% |
| ! | AAGAGTAAGAAGTAACATAA+GGG | + | chr7.3:57414056-57414075 | None:intergenic | 25.0% |
| ! | ACTCTTATGATTATGATTCA+AGG | - | chr7.3:57414679-57414698 | MS.gene38339:intron | 25.0% |
| ! | AGAAGGAATGATATATAACA+CGG | - | chr7.3:57415352-57415371 | MS.gene38339:intron | 25.0% |
| ! | AGTTTCAAAACACAATCAAT+TGG | - | chr7.3:57414824-57414843 | MS.gene38339:intron | 25.0% |
| ! | CTTTATATTGCTACTAAATG+CGG | - | chr7.3:57414385-57414404 | MS.gene38339:intron | 25.0% |
| ! | TAGCCATGATTACAATTAAA+AGG | + | chr7.3:57415821-57415840 | None:intergenic | 25.0% |
| !! | ATATTTCATTTTACGAAGCA+TGG | + | chr7.3:57415513-57415532 | None:intergenic | 25.0% |
| !! | CGAAAAATAAAAGGAACTTT+TGG | - | chr7.3:57414258-57414277 | MS.gene38339:intron | 25.0% |
| !! | CTTTTTACAAGTTACTACAA+AGG | + | chr7.3:57414534-57414553 | None:intergenic | 25.0% |
| !! | TTAGTGAATATTTCTTTTGG+TGG | + | chr7.3:57415328-57415347 | None:intergenic | 25.0% |
| !!! | AAAAGTTTTTAAGAATCGTG+TGG | - | chr7.3:57414549-57414568 | MS.gene38339:intron | 25.0% |
| !!! | ACAAGAAGATAAGGTTTTAT+TGG | + | chr7.3:57413876-57413895 | None:intergenic | 25.0% |
| !!! | ACTCTTTTGAGATAAATTAG+AGG | - | chr7.3:57414070-57414089 | MS.gene38339:intron | 25.0% |
| !!! | TATTTTACTAACTTGTGGAA+TGG | - | chr7.3:57415267-57415286 | MS.gene38339:intron | 25.0% |
| !!! | TTGATTGTGTTTTGAAACTA+TGG | + | chr7.3:57414823-57414842 | None:intergenic | 25.0% |
| AGAAAACAAGAGATAACATC+AGG | - | chr7.3:57413917-57413936 | MS.gene38339:CDS | 30.0% | |
| AGATAAATTAGAGGTCTTCT+TGG | - | chr7.3:57414079-57414098 | MS.gene38339:intron | 30.0% | |
| ATTACAGCAACAAGAAGATA+AGG | + | chr7.3:57413885-57413904 | None:intergenic | 30.0% | |
| CTACTAAATGCGGAAATAAA+CGG | - | chr7.3:57414395-57414414 | MS.gene38339:intron | 30.0% | |
| GATAAATTAGAGGTCTTCTT+GGG | - | chr7.3:57414080-57414099 | MS.gene38339:intron | 30.0% | |
| TAAGAAATGTTACGACCATT+AGG | + | chr7.3:57414485-57414504 | None:intergenic | 30.0% | |
| TATCATGAAAGGAAAAGTCT+TGG | - | chr7.3:57415668-57415687 | MS.gene38339:CDS | 30.0% | |
| TCTGACACAACAATTTGAAA+AGG | + | chr7.3:57414613-57414632 | None:intergenic | 30.0% | |
| TGCAATCTCAAGGATATAAT+AGG | - | chr7.3:57414706-57414725 | MS.gene38339:intron | 30.0% | |
| TGGAAGAAAACAATGTTAGA+TGG | + | chr7.3:57415573-57415592 | None:intergenic | 30.0% | |
| TTATCTTCTTGTTGCTGTAA+TGG | - | chr7.3:57413884-57413903 | MS.gene38339:CDS | 30.0% | |
| TTGTTGCTGCGAAAAATAAA+AGG | - | chr7.3:57414249-57414268 | MS.gene38339:intron | 30.0% | |
| ! | ACTCAATACAAAAGGTTTTG+AGG | + | chr7.3:57414462-57414481 | None:intergenic | 30.0% |
| ! | ATTTTTCGCAGCAACAAATA+TGG | + | chr7.3:57414246-57414265 | None:intergenic | 30.0% |
| ! | GGAAAGAAAGCTGAATATTT+TGG | + | chr7.3:57414513-57414532 | None:intergenic | 30.0% |
| ! | GTCTGTATTTTACTAACTTG+TGG | - | chr7.3:57415262-57415281 | MS.gene38339:intron | 30.0% |
| !!! | AACTCGTTGCTTTAAGATTT+TGG | - | chr7.3:57414923-57414942 | MS.gene38339:CDS | 30.0% |
| AAACAAGAGATAACATCAGG+TGG | - | chr7.3:57413920-57413939 | MS.gene38339:CDS | 35.0% | |
| ATCATCTGATGAAGCCATTT+GGG | - | chr7.3:57415185-57415204 | MS.gene38339:intron | 35.0% | |
| CACAGTTGGATGAAAAAGTT+AGG | - | chr7.3:57415769-57415788 | MS.gene38339:CDS | 35.0% | |
| CCATTAGGACTCAATACAAA+AGG | + | chr7.3:57414470-57414489 | None:intergenic | 35.0% | |
| GATCTGTTGATCTATGATTG+TGG | + | chr7.3:57414655-57414674 | None:intergenic | 35.0% | |
| GGTTAATGTAGTCGAAATTG+CGG | - | chr7.3:57414416-57414435 | MS.gene38339:intron | 35.0% | |
| GTAAAATACAGACCTGAATC+AGG | + | chr7.3:57415255-57415274 | None:intergenic | 35.0% | |
| GTGACTTATATGTCGTACAT+CGG | - | chr7.3:57414857-57414876 | MS.gene38339:intron | 35.0% | |
| TAAGAAATGTGTTGCAGCAA+AGG | - | chr7.3:57415217-57415236 | MS.gene38339:intron | 35.0% | |
| TATCATCTGATGAAGCCATT+TGG | - | chr7.3:57415184-57415203 | MS.gene38339:intron | 35.0% | |
| TCAGCGTAGAAATCTTAAAC+TGG | - | chr7.3:57415637-57415656 | MS.gene38339:intron | 35.0% | |
| TCTCAAATTATTAGCGGTGT+TGG | + | chr7.3:57415406-57415425 | None:intergenic | 35.0% | |
| TTATATGTCGTACATCGGAT+AGG | - | chr7.3:57414862-57414881 | MS.gene38339:intron | 35.0% | |
| ! | CCTTTTGTATTGAGTCCTAA+TGG | - | chr7.3:57414467-57414486 | MS.gene38339:CDS | 35.0% |
| ! | GTGTAATTATGTGTTGGTGT+CGG | - | chr7.3:57415441-57415460 | MS.gene38339:intron | 35.0% |
| AACAGGTGATACATCACAGT+TGG | - | chr7.3:57415755-57415774 | MS.gene38339:CDS | 40.0% | |
| AATGATTTATTCCAGTCCCC+TGG | - | chr7.3:57415720-57415739 | MS.gene38339:CDS | 40.0% | |
| ATGATTTATTCCAGTCCCCT+GGG | - | chr7.3:57415721-57415740 | MS.gene38339:CDS | 40.0% | |
| CTGTTGCATTATCAATCCCA+GGG | + | chr7.3:57415740-57415759 | None:intergenic | 40.0% | |
| CTTAATCCTTAAAGCCGTGT+CGG | + | chr7.3:57415033-57415052 | None:intergenic | 40.0% | |
| GATGGAACAGTGTCAAATAC+AGG | + | chr7.3:57413959-57413978 | None:intergenic | 40.0% | |
| TACATCGGATAGGAAAGTAG+AGG | - | chr7.3:57414872-57414891 | MS.gene38339:intron | 40.0% | |
| TCAAGGATTGTGCAATCTCA+AGG | - | chr7.3:57414696-57414715 | MS.gene38339:intron | 40.0% | |
| TCCATCTCAAATGGAAGTTG+AGG | - | chr7.3:57413973-57413992 | MS.gene38339:CDS | 40.0% | |
| TCCTCAACTTCCATTTGAGA+TGG | + | chr7.3:57413977-57413996 | None:intergenic | 40.0% | |
| TCTTATGACAGCATCCCAAA+TGG | + | chr7.3:57415202-57415221 | None:intergenic | 40.0% | |
| TGACACTGTTCCATCTCAAA+TGG | - | chr7.3:57413964-57413983 | MS.gene38339:CDS | 40.0% | |
| TGTTGCATTATCAATCCCAG+GGG | + | chr7.3:57415739-57415758 | None:intergenic | 40.0% | |
| TTAATCCTTAAAGCCGTGTC+GGG | + | chr7.3:57415032-57415051 | None:intergenic | 40.0% | |
| TTATTGGCGTTACTCAACTG+AGG | + | chr7.3:57413860-57413879 | None:intergenic | 40.0% | |
| TTGCGGTTATGTTGTCATTG+CGG | - | chr7.3:57414433-57414452 | MS.gene38339:CDS | 40.0% | |
| ! | GATTAAGCGTGTCTTGTTGT+GGG | + | chr7.3:57415480-57415499 | None:intergenic | 40.0% |
| ! | GTCTTTTACCTTTAGCTGGA+TGG | + | chr7.3:57415593-57415612 | None:intergenic | 40.0% |
| ! | GTTTTCTTCCATCCAGCTAA+AGG | - | chr7.3:57415582-57415601 | MS.gene38339:intron | 40.0% |
| ! | TCTCTTTGTTCTGAACTCTG+AGG | + | chr7.3:57415615-57415634 | None:intergenic | 40.0% |
| ! | TGAGGTCTTTTACCTTTAGC+TGG | + | chr7.3:57415597-57415616 | None:intergenic | 40.0% |
| ! | TGTGCTGATGAAATGTGTCT+CGG | - | chr7.3:57415131-57415150 | MS.gene38339:intron | 40.0% |
| AACAAGACACGCTTAATCCG+AGG | - | chr7.3:57415482-57415501 | MS.gene38339:intron | 45.0% | |
| AAGAGAGAAACCTGAACAGC+AGG | + | chr7.3:57414765-57414784 | None:intergenic | 45.0% | |
| CCTGTTGCATTATCAATCCC+AGG | + | chr7.3:57415741-57415760 | None:intergenic | 45.0% | |
| TAGAGTCTCTCTCACTTGTG+TGG | - | chr7.3:57414955-57414974 | MS.gene38339:CDS | 45.0% | |
| ! | GGATTAAGCGTGTCTTGTTG+TGG | + | chr7.3:57415481-57415500 | None:intergenic | 45.0% |
| !! | CCTGGGATTGATAATGCAAC+AGG | - | chr7.3:57415738-57415757 | MS.gene38339:CDS | 45.0% |
| CATTATCAATCCCAGGGGAC+TGG | + | chr7.3:57415734-57415753 | None:intergenic | 50.0% | |
| TACGAAGCATGGACACTCCT+CGG | + | chr7.3:57415502-57415521 | None:intergenic | 50.0% | |
| TCTGCCAGTCTGCTTTGATG+CGG | - | chr7.3:57414982-57415001 | MS.gene38339:CDS | 50.0% | |
| TGTGTTGCAGCAAAGGCTTC+TGG | - | chr7.3:57415224-57415243 | MS.gene38339:intron | 50.0% | |
| ! | GTCTTGTTGTGGGACATCTG+CGG | + | chr7.3:57415470-57415489 | None:intergenic | 50.0% |
| !! | CTTCTGGAGTTGCCTGATTC+AGG | - | chr7.3:57415240-57415259 | MS.gene38339:intron | 50.0% |
| AAAGCCGTGTCGGGTCATGA+GGG | + | chr7.3:57415023-57415042 | None:intergenic | 55.0% | |
| CATGACCCGACACGGCTTTA+AGG | - | chr7.3:57415024-57415043 | MS.gene38339:CDS | 55.0% | |
| CTGCCAGTCTGCTTTGATGC+GGG | - | chr7.3:57414983-57415002 | MS.gene38339:CDS | 55.0% | |
| GCAAGCTGATCCTGCTGTTC+AGG | - | chr7.3:57414752-57414771 | MS.gene38339:intron | 55.0% | |
| TAAAGCCGTGTCGGGTCATG+AGG | + | chr7.3:57415024-57415043 | None:intergenic | 55.0% | |
| AAGCCGTGTCGGGTCATGAG+GGG | + | chr7.3:57415022-57415041 | None:intergenic | 60.0% | |
| ACTCCCCTCATGACCCGACA+CGG | - | chr7.3:57415016-57415035 | MS.gene38339:CDS | 60.0% | |
| CCACCCGCATCAAAGCAGAC+TGG | + | chr7.3:57414989-57415008 | None:intergenic | 60.0% | |
| CCAGTCTGCTTTGATGCGGG+TGG | - | chr7.3:57414986-57415005 | MS.gene38339:CDS | 60.0% | |
| CGGGTCATGAGGGGAGTCCA+GGG | + | chr7.3:57415013-57415032 | None:intergenic | 65.0% | |
| GCTTTGATGCGGGTGGTCCC+TGG | - | chr7.3:57414993-57415012 | MS.gene38339:CDS | 65.0% | |
| TCGGGTCATGAGGGGAGTCC+AGG | + | chr7.3:57415014-57415033 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 57413821 | 57415863 | 57413821 | ID=MS.gene38339 |
| chr7.3 | mRNA | 57413821 | 57415863 | 57413821 | ID=MS.gene38339.t1;Parent=MS.gene38339 |
| chr7.3 | exon | 57415667 | 57415863 | 57415667 | ID=MS.gene38339.t1.exon1;Parent=MS.gene38339.t1 |
| chr7.3 | CDS | 57415667 | 57415863 | 57415667 | ID=cds.MS.gene38339.t1;Parent=MS.gene38339.t1 |
| chr7.3 | exon | 57414911 | 57415052 | 57414911 | ID=MS.gene38339.t1.exon2;Parent=MS.gene38339.t1 |
| chr7.3 | CDS | 57414911 | 57415052 | 57414911 | ID=cds.MS.gene38339.t1;Parent=MS.gene38339.t1 |
| chr7.3 | exon | 57414423 | 57414516 | 57414423 | ID=MS.gene38339.t1.exon3;Parent=MS.gene38339.t1 |
| chr7.3 | CDS | 57414423 | 57414516 | 57414423 | ID=cds.MS.gene38339.t1;Parent=MS.gene38339.t1 |
| chr7.3 | exon | 57413821 | 57414086 | 57413821 | ID=MS.gene38339.t1.exon4;Parent=MS.gene38339.t1 |
| chr7.3 | CDS | 57413821 | 57414086 | 57413821 | ID=cds.MS.gene38339.t1;Parent=MS.gene38339.t1 |
| Gene Sequence |
| Protein sequence |
