Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87268.t1 | XP_003596609.1 | 98.7 | 230 | 3 | 0 | 1 | 230 | 1 | 230 | 3.30E-120 | 441 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87268.t1 | Q9SGH4 | 55.4 | 224 | 94 | 3 | 1 | 223 | 1 | 219 | 3.9e-61 | 236.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87268.t1 | G7IHD6 | 98.7 | 230 | 3 | 0 | 1 | 230 | 1 | 230 | 2.4e-120 | 441.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene87268 | 0.813421 | 2.58E-51 | -1.69E-46 |
| MS.gene049284 | MS.gene87268 | 0.800853 | 1.19E-48 | -1.69E-46 |
| MS.gene04933 | MS.gene87268 | 0.80009 | 1.70E-48 | -1.69E-46 |
| MS.gene049346 | MS.gene87268 | 0.875808 | 2.30E-68 | -1.69E-46 |
| MS.gene049351 | MS.gene87268 | 0.849494 | 3.12E-60 | -1.69E-46 |
| MS.gene049427 | MS.gene87268 | 0.835197 | 1.93E-56 | -1.69E-46 |
| MS.gene049491 | MS.gene87268 | 0.812195 | 4.79E-51 | -1.69E-46 |
| MS.gene049661 | MS.gene87268 | 0.867184 | 1.65E-65 | -1.69E-46 |
| MS.gene049662 | MS.gene87268 | 0.866169 | 3.47E-65 | -1.69E-46 |
| MS.gene049758 | MS.gene87268 | 0.85998 | 2.84E-63 | -1.69E-46 |
| MS.gene049805 | MS.gene87268 | 0.813673 | 2.27E-51 | -1.69E-46 |
| MS.gene049910 | MS.gene87268 | 0.849215 | 3.73E-60 | -1.69E-46 |
| MS.gene049993 | MS.gene87268 | 0.826577 | 2.51E-54 | -1.69E-46 |
| MS.gene050076 | MS.gene87268 | 0.872322 | 3.48E-67 | -1.69E-46 |
| MS.gene050301 | MS.gene87268 | 0.88783 | 1.01E-72 | -1.69E-46 |
| MS.gene050397 | MS.gene87268 | 0.872599 | 2.81E-67 | -1.69E-46 |
| MS.gene050404 | MS.gene87268 | 0.812578 | 3.95E-51 | -1.69E-46 |
| MS.gene050406 | MS.gene87268 | 0.855764 | 5.07E-62 | -1.69E-46 |
| MS.gene050426 | MS.gene87268 | -0.809862 | 1.53E-50 | -1.69E-46 |
| MS.gene050432 | MS.gene87268 | 0.864925 | 8.56E-65 | -1.69E-46 |
| MS.gene050464 | MS.gene87268 | 0.877467 | 6.14E-69 | -1.69E-46 |
| MS.gene050529 | MS.gene87268 | 0.873477 | 1.43E-67 | -1.69E-46 |
| MS.gene050593 | MS.gene87268 | 0.816374 | 5.71E-52 | -1.69E-46 |
| MS.gene050670 | MS.gene87268 | 0.889722 | 1.88E-73 | -1.69E-46 |
| MS.gene050783 | MS.gene87268 | 0.849804 | 2.56E-60 | -1.69E-46 |
| MS.gene050812 | MS.gene87268 | 0.821763 | 3.40E-53 | -1.69E-46 |
| MS.gene05101 | MS.gene87268 | 0.868923 | 4.55E-66 | -1.69E-46 |
| MS.gene05105 | MS.gene87268 | 0.866237 | 3.30E-65 | -1.69E-46 |
| MS.gene05119 | MS.gene87268 | -0.803546 | 3.31E-49 | -1.69E-46 |
| MS.gene051387 | MS.gene87268 | 0.841552 | 4.43E-58 | -1.69E-46 |
| MS.gene051471 | MS.gene87268 | 0.841869 | 3.66E-58 | -1.69E-46 |
| MS.gene051525 | MS.gene87268 | 0.868327 | 7.09E-66 | -1.69E-46 |
| MS.gene051582 | MS.gene87268 | 0.921854 | 2.10E-88 | -1.69E-46 |
| MS.gene051666 | MS.gene87268 | 0.806375 | 8.48E-50 | -1.69E-46 |
| MS.gene051692 | MS.gene87268 | 0.801767 | 7.71E-49 | -1.69E-46 |
| MS.gene051860 | MS.gene87268 | 0.835022 | 2.14E-56 | -1.69E-46 |
| MS.gene051877 | MS.gene87268 | 0.835777 | 1.38E-56 | -1.69E-46 |
| MS.gene052011 | MS.gene87268 | -0.86454 | 1.13E-64 | -1.69E-46 |
| MS.gene052077 | MS.gene87268 | 0.842144 | 3.09E-58 | -1.69E-46 |
| MS.gene052078 | MS.gene87268 | 0.846852 | 1.67E-59 | -1.69E-46 |
| MS.gene052134 | MS.gene87268 | 0.805796 | 1.12E-49 | -1.69E-46 |
| MS.gene052135 | MS.gene87268 | 0.816872 | 4.42E-52 | -1.69E-46 |
| MS.gene052178 | MS.gene87268 | 0.817871 | 2.63E-52 | -1.69E-46 |
| MS.gene052188 | MS.gene87268 | 0.843607 | 1.26E-58 | -1.69E-46 |
| MS.gene052253 | MS.gene87268 | 0.888281 | 6.78E-73 | -1.69E-46 |
| MS.gene052310 | MS.gene87268 | 0.880112 | 7.18E-70 | -1.69E-46 |
| MS.gene052322 | MS.gene87268 | 0.835199 | 1.93E-56 | -1.69E-46 |
| MS.gene052326 | MS.gene87268 | 0.83324 | 5.97E-56 | -1.69E-46 |
| MS.gene052340 | MS.gene87268 | 0.865495 | 5.67E-65 | -1.69E-46 |
| MS.gene052421 | MS.gene87268 | 0.846116 | 2.66E-59 | -1.69E-46 |
| MS.gene052481 | MS.gene87268 | 0.860845 | 1.55E-63 | -1.69E-46 |
| MS.gene052484 | MS.gene87268 | 0.814783 | 1.29E-51 | -1.69E-46 |
| MS.gene052485 | MS.gene87268 | 0.863526 | 2.34E-64 | -1.69E-46 |
| MS.gene052501 | MS.gene87268 | 0.809598 | 1.75E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene87268 | 0.825221 | 5.28E-54 | -1.69E-46 |
| MS.gene052982 | MS.gene87268 | 0.839997 | 1.13E-57 | -1.69E-46 |
| MS.gene053103 | MS.gene87268 | 0.831938 | 1.26E-55 | -1.69E-46 |
| MS.gene053107 | MS.gene87268 | 0.801989 | 6.94E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene87268 | 0.849089 | 4.04E-60 | -1.69E-46 |
| MS.gene053322 | MS.gene87268 | 0.820907 | 5.35E-53 | -1.69E-46 |
| MS.gene053330 | MS.gene87268 | 0.829901 | 3.97E-55 | -1.69E-46 |
| MS.gene053557 | MS.gene87268 | 0.833357 | 5.59E-56 | -1.69E-46 |
| MS.gene053836 | MS.gene87268 | 0.893228 | 7.64E-75 | -1.69E-46 |
| MS.gene053907 | MS.gene87268 | 0.82688 | 2.13E-54 | -1.69E-46 |
| MS.gene053928 | MS.gene87268 | 0.827702 | 1.35E-54 | -1.69E-46 |
| MS.gene053971 | MS.gene87268 | 0.872048 | 4.29E-67 | -1.69E-46 |
| MS.gene054010 | MS.gene87268 | 0.804571 | 2.03E-49 | -1.69E-46 |
| MS.gene054011 | MS.gene87268 | 0.820565 | 6.41E-53 | -1.69E-46 |
| MS.gene054012 | MS.gene87268 | 0.809612 | 1.74E-50 | -1.69E-46 |
| MS.gene054013 | MS.gene87268 | 0.805153 | 1.53E-49 | -1.69E-46 |
| MS.gene054102 | MS.gene87268 | 0.801421 | 9.08E-49 | -1.69E-46 |
| MS.gene054123 | MS.gene87268 | 0.839184 | 1.84E-57 | -1.69E-46 |
| MS.gene05412 | MS.gene87268 | 0.831414 | 1.69E-55 | -1.69E-46 |
| MS.gene05413 | MS.gene87268 | 0.848455 | 6.06E-60 | -1.69E-46 |
| MS.gene054183 | MS.gene87268 | 0.85256 | 4.26E-61 | -1.69E-46 |
| MS.gene054349 | MS.gene87268 | 0.818798 | 1.62E-52 | -1.69E-46 |
| MS.gene054376 | MS.gene87268 | 0.809316 | 2.01E-50 | -1.69E-46 |
| MS.gene054473 | MS.gene87268 | 0.848422 | 6.19E-60 | -1.69E-46 |
| MS.gene05455 | MS.gene87268 | 0.84043 | 8.74E-58 | -1.69E-46 |
| MS.gene054719 | MS.gene87268 | 0.830275 | 3.22E-55 | -1.69E-46 |
| MS.gene054802 | MS.gene87268 | 0.824636 | 7.25E-54 | -1.69E-46 |
| MS.gene054803 | MS.gene87268 | 0.819283 | 1.26E-52 | -1.69E-46 |
| MS.gene054804 | MS.gene87268 | 0.823649 | 1.24E-53 | -1.69E-46 |
| MS.gene054918 | MS.gene87268 | 0.860125 | 2.57E-63 | -1.69E-46 |
| MS.gene054920 | MS.gene87268 | 0.803433 | 3.49E-49 | -1.69E-46 |
| MS.gene054955 | MS.gene87268 | 0.803705 | 3.07E-49 | -1.69E-46 |
| MS.gene054983 | MS.gene87268 | 0.848576 | 5.61E-60 | -1.69E-46 |
| MS.gene05505 | MS.gene87268 | 0.802238 | 6.17E-49 | -1.69E-46 |
| MS.gene055116 | MS.gene87268 | 0.904919 | 7.41E-80 | -1.69E-46 |
| MS.gene055277 | MS.gene87268 | 0.884657 | 1.59E-71 | -1.69E-46 |
| MS.gene055289 | MS.gene87268 | 0.80509 | 1.58E-49 | -1.69E-46 |
| MS.gene055369 | MS.gene87268 | 0.84353 | 1.32E-58 | -1.69E-46 |
| MS.gene055370 | MS.gene87268 | 0.821133 | 4.75E-53 | -1.69E-46 |
| MS.gene055390 | MS.gene87268 | 0.835562 | 1.56E-56 | -1.69E-46 |
| MS.gene055412 | MS.gene87268 | 0.811414 | 7.09E-51 | -1.69E-46 |
| MS.gene055422 | MS.gene87268 | 0.86505 | 7.82E-65 | -1.69E-46 |
| MS.gene055428 | MS.gene87268 | 0.884765 | 1.45E-71 | -1.69E-46 |
| MS.gene055533 | MS.gene87268 | 0.81122 | 7.81E-51 | -1.69E-46 |
| MS.gene05553 | MS.gene87268 | 0.876069 | 1.87E-68 | -1.69E-46 |
| MS.gene055564 | MS.gene87268 | 0.835929 | 1.26E-56 | -1.69E-46 |
| MS.gene055604 | MS.gene87268 | 0.825046 | 5.80E-54 | -1.69E-46 |
| MS.gene055712 | MS.gene87268 | 0.81496 | 1.18E-51 | -1.69E-46 |
| MS.gene05594 | MS.gene87268 | 0.837127 | 6.24E-57 | -1.69E-46 |
| MS.gene056191 | MS.gene87268 | 0.88156 | 2.17E-70 | -1.69E-46 |
| MS.gene056337 | MS.gene87268 | 0.825672 | 4.13E-54 | -1.69E-46 |
| MS.gene056407 | MS.gene87268 | 0.902042 | 1.45E-78 | -1.69E-46 |
| MS.gene056410 | MS.gene87268 | 0.821874 | 3.20E-53 | -1.69E-46 |
| MS.gene056451 | MS.gene87268 | 0.871946 | 4.64E-67 | -1.69E-46 |
| MS.gene056452 | MS.gene87268 | 0.802849 | 4.62E-49 | -1.69E-46 |
| MS.gene056497 | MS.gene87268 | 0.819811 | 9.55E-53 | -1.69E-46 |
| MS.gene056511 | MS.gene87268 | 0.817431 | 3.31E-52 | -1.69E-46 |
| MS.gene056514 | MS.gene87268 | 0.812724 | 3.67E-51 | -1.69E-46 |
| MS.gene056612 | MS.gene87268 | 0.867648 | 1.17E-65 | -1.69E-46 |
| MS.gene056659 | MS.gene87268 | 0.821169 | 4.66E-53 | -1.69E-46 |
| MS.gene056723 | MS.gene87268 | 0.859989 | 2.82E-63 | -1.69E-46 |
| MS.gene056796 | MS.gene87268 | 0.81798 | 2.49E-52 | -1.69E-46 |
| MS.gene056846 | MS.gene87268 | 0.816121 | 6.51E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene87268 | -0.841776 | 3.87E-58 | -1.69E-46 |
| MS.gene057011 | MS.gene87268 | 0.838436 | 2.88E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene87268 | 0.902588 | 8.32E-79 | -1.69E-46 |
| MS.gene057121 | MS.gene87268 | 0.851471 | 8.68E-61 | -1.69E-46 |
| MS.gene057123 | MS.gene87268 | 0.845874 | 3.09E-59 | -1.69E-46 |
| MS.gene057124 | MS.gene87268 | 0.834255 | 3.33E-56 | -1.69E-46 |
| MS.gene057146 | MS.gene87268 | 0.844126 | 9.17E-59 | -1.69E-46 |
| MS.gene057196 | MS.gene87268 | 0.802046 | 6.76E-49 | -1.69E-46 |
| MS.gene057245 | MS.gene87268 | 0.843244 | 1.58E-58 | -1.69E-46 |
| MS.gene057295 | MS.gene87268 | 0.804474 | 2.12E-49 | -1.69E-46 |
| MS.gene057310 | MS.gene87268 | 0.815689 | 8.13E-52 | -1.69E-46 |
| MS.gene05733 | MS.gene87268 | 0.827345 | 1.65E-54 | -1.69E-46 |
| MS.gene057396 | MS.gene87268 | 0.8063 | 8.79E-50 | -1.69E-46 |
| MS.gene057416 | MS.gene87268 | 0.811645 | 6.31E-51 | -1.69E-46 |
| MS.gene057448 | MS.gene87268 | 0.825193 | 5.36E-54 | -1.69E-46 |
| MS.gene057449 | MS.gene87268 | 0.811047 | 8.51E-51 | -1.69E-46 |
| MS.gene057450 | MS.gene87268 | 0.829287 | 5.60E-55 | -1.69E-46 |
| MS.gene057476 | MS.gene87268 | 0.823859 | 1.10E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene87268 | 0.862481 | 4.92E-64 | -1.69E-46 |
| MS.gene057779 | MS.gene87268 | 0.80472 | 1.89E-49 | -1.69E-46 |
| MS.gene057823 | MS.gene87268 | 0.854692 | 1.04E-61 | -1.69E-46 |
| MS.gene057825 | MS.gene87268 | 0.8149 | 1.22E-51 | -1.69E-46 |
| MS.gene057845 | MS.gene87268 | 0.809356 | 1.97E-50 | -1.69E-46 |
| MS.gene058002 | MS.gene87268 | 0.891021 | 5.81E-74 | -1.69E-46 |
| MS.gene058006 | MS.gene87268 | 0.814379 | 1.59E-51 | -1.69E-46 |
| MS.gene058007 | MS.gene87268 | 0.811305 | 7.48E-51 | -1.69E-46 |
| MS.gene058019 | MS.gene87268 | 0.828274 | 9.85E-55 | -1.69E-46 |
| MS.gene058082 | MS.gene87268 | 0.802436 | 5.61E-49 | -1.69E-46 |
| MS.gene05811 | MS.gene87268 | 0.853504 | 2.29E-61 | -1.69E-46 |
| MS.gene058142 | MS.gene87268 | 0.833685 | 4.63E-56 | -1.69E-46 |
| MS.gene058233 | MS.gene87268 | 0.909823 | 3.72E-82 | -1.69E-46 |
| MS.gene058276 | MS.gene87268 | 0.838122 | 3.47E-57 | -1.69E-46 |
| MS.gene058293 | MS.gene87268 | 0.863919 | 1.76E-64 | -1.69E-46 |
| MS.gene058365 | MS.gene87268 | 0.813609 | 2.35E-51 | -1.69E-46 |
| MS.gene058376 | MS.gene87268 | 0.811097 | 8.30E-51 | -1.69E-46 |
| MS.gene058444 | MS.gene87268 | 0.81074 | 9.92E-51 | -1.69E-46 |
| MS.gene058660 | MS.gene87268 | 0.891554 | 3.57E-74 | -1.69E-46 |
| MS.gene058700 | MS.gene87268 | 0.824735 | 6.87E-54 | -1.69E-46 |
| MS.gene058710 | MS.gene87268 | 0.827516 | 1.50E-54 | -1.69E-46 |
| MS.gene058746 | MS.gene87268 | 0.823456 | 1.37E-53 | -1.69E-46 |
| MS.gene058787 | MS.gene87268 | 0.817127 | 3.87E-52 | -1.69E-46 |
| MS.gene058845 | MS.gene87268 | 0.80301 | 4.27E-49 | -1.69E-46 |
| MS.gene05886 | MS.gene87268 | 0.835572 | 1.55E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene87268 | 0.824002 | 1.02E-53 | -1.69E-46 |
| MS.gene058995 | MS.gene87268 | 0.819439 | 1.16E-52 | -1.69E-46 |
| MS.gene059011 | MS.gene87268 | 0.834482 | 2.92E-56 | -1.69E-46 |
| MS.gene05907 | MS.gene87268 | 0.894383 | 2.60E-75 | -1.69E-46 |
| MS.gene059082 | MS.gene87268 | 0.8149 | 1.22E-51 | -1.69E-46 |
| MS.gene059141 | MS.gene87268 | 0.859249 | 4.71E-63 | -1.69E-46 |
| MS.gene059285 | MS.gene87268 | 0.800045 | 1.73E-48 | -1.69E-46 |
| MS.gene059294 | MS.gene87268 | 0.813544 | 2.43E-51 | -1.69E-46 |
| MS.gene059326 | MS.gene87268 | 0.801181 | 1.02E-48 | -1.69E-46 |
| MS.gene059420 | MS.gene87268 | 0.876475 | 1.36E-68 | -1.69E-46 |
| MS.gene059462 | MS.gene87268 | 0.834302 | 3.24E-56 | -1.69E-46 |
| MS.gene059518 | MS.gene87268 | 0.816858 | 4.45E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene87268 | 0.836022 | 1.19E-56 | -1.69E-46 |
| MS.gene059597 | MS.gene87268 | 0.865815 | 4.49E-65 | -1.69E-46 |
| MS.gene059676 | MS.gene87268 | 0.84677 | 1.76E-59 | -1.69E-46 |
| MS.gene059688 | MS.gene87268 | 0.904968 | 7.04E-80 | -1.69E-46 |
| MS.gene059692 | MS.gene87268 | 0.903809 | 2.36E-79 | -1.69E-46 |
| MS.gene059695 | MS.gene87268 | 0.905256 | 5.20E-80 | -1.69E-46 |
| MS.gene05984 | MS.gene87268 | 0.846251 | 2.44E-59 | -1.69E-46 |
| MS.gene059894 | MS.gene87268 | 0.863286 | 2.77E-64 | -1.69E-46 |
| MS.gene059960 | MS.gene87268 | 0.815397 | 9.44E-52 | -1.69E-46 |
| MS.gene060247 | MS.gene87268 | 0.803848 | 2.87E-49 | -1.69E-46 |
| MS.gene06037 | MS.gene87268 | 0.853001 | 3.19E-61 | -1.69E-46 |
| MS.gene060403 | MS.gene87268 | 0.891211 | 4.89E-74 | -1.69E-46 |
| MS.gene060407 | MS.gene87268 | 0.831589 | 1.53E-55 | -1.69E-46 |
| MS.gene060804 | MS.gene87268 | 0.833156 | 6.27E-56 | -1.69E-46 |
| MS.gene06090 | MS.gene87268 | 0.804138 | 2.49E-49 | -1.69E-46 |
| MS.gene060986 | MS.gene87268 | 0.821698 | 3.52E-53 | -1.69E-46 |
| MS.gene061041 | MS.gene87268 | 0.803832 | 2.89E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene87268 | 0.921529 | 3.18E-88 | -1.69E-46 |
| MS.gene061051 | MS.gene87268 | -0.830327 | 3.13E-55 | -1.69E-46 |
| MS.gene061154 | MS.gene87268 | 0.841136 | 5.71E-58 | -1.69E-46 |
| MS.gene061159 | MS.gene87268 | 0.828626 | 8.10E-55 | -1.69E-46 |
| MS.gene061200 | MS.gene87268 | 0.80221 | 6.25E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87268.t1 | MTR_2g082580 | 98.696 | 230 | 3 | 0 | 1 | 230 | 1 | 230 | 1.17e-170 | 469 |
| MS.gene87268.t1 | MTR_5g041910 | 29.358 | 109 | 77 | 0 | 104 | 212 | 141 | 249 | 1.39e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87268.t1 | AT3G01440 | 55.357 | 224 | 94 | 3 | 1 | 223 | 1 | 219 | 4.14e-83 | 247 |
| MS.gene87268.t1 | AT4G21280 | 25.532 | 235 | 150 | 4 | 1 | 223 | 1 | 222 | 1.37e-18 | 81.6 |
| MS.gene87268.t1 | AT4G21280 | 25.424 | 236 | 150 | 5 | 1 | 223 | 1 | 223 | 7.32e-18 | 79.7 |
| MS.gene87268.t1 | AT4G05180 | 27.684 | 177 | 124 | 2 | 50 | 223 | 54 | 229 | 1.40e-14 | 70.9 |
| MS.gene87268.t1 | AT4G05180 | 27.684 | 177 | 124 | 2 | 50 | 223 | 54 | 229 | 1.40e-14 | 70.9 |
| MS.gene87268.t1 | AT1G14150 | 28.346 | 127 | 91 | 0 | 95 | 221 | 61 | 187 | 4.33e-13 | 65.9 |
| MS.gene87268.t1 | AT1G14150 | 30.303 | 99 | 69 | 0 | 95 | 193 | 61 | 159 | 2.72e-11 | 60.5 |
Find 38 sgRNAs with CRISPR-Local
Find 99 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACTACTTGTCCTGTCTTAA+AGG | 0.141076 | 2.2:-14439521 | None:intergenic |
| TAGCTAAGGATAATGGATTT+TGG | 0.177277 | 2.2:+14439671 | MS.gene87268:CDS |
| CAAGTAGTAGTTGGATTTCT+TGG | 0.273988 | 2.2:+14439535 | MS.gene87268:CDS |
| TTAAAGGTTCTTTGTGCATT+TGG | 0.275452 | 2.2:-14439505 | None:intergenic |
| TTTGGAACAAGGCATGTAAT+TGG | 0.297323 | 2.2:-14439487 | None:intergenic |
| CTATTAGTGACAGTTGGTTC+TGG | 0.310416 | 2.2:-14439709 | None:intergenic |
| AAACTCTACATGGCAAATAT+TGG | 0.316818 | 2.2:+14440717 | MS.gene87268:CDS |
| GTGACAGTTGGTTCTGGAAT+AGG | 0.317646 | 2.2:-14439703 | None:intergenic |
| ATTTCACTAGCTAAGGATAA+TGG | 0.333626 | 2.2:+14439664 | MS.gene87268:CDS |
| CTTTGTTTCTTTAGTTCTTA+CGG | 0.338232 | 2.2:+14439624 | MS.gene87268:CDS |
| TGAAAGTAGACTTGAGTCTT+AGG | 0.346421 | 2.2:-14440839 | None:intergenic |
| TGTAATTGGAGTTAAAGTTT+TGG | 0.348907 | 2.2:-14439473 | None:intergenic |
| TTTGTTTCTTTAGTTCTTAC+GGG | 0.353615 | 2.2:+14439625 | MS.gene87268:CDS |
| GATCCTTAAAACACTTCCTT+TGG | 0.359342 | 2.2:-14440742 | None:intergenic |
| GATATTGCAAATGAGAAAAC+GGG | 0.400999 | 2.2:+14440672 | MS.gene87268:intron |
| TGAAACACAAGCATGCTATA+AGG | 0.409707 | 2.2:+14441258 | MS.gene87268:CDS |
| AATTGCTGCTTATCTTCAGC+TGG | 0.415937 | 2.2:-14440897 | None:intergenic |
| ACTCCATGCAAATTTGTTAG+AGG | 0.418986 | 2.2:-14439448 | None:intergenic |
| AAGACACACTCAACTATGTT+AGG | 0.422431 | 2.2:+14440811 | MS.gene87268:CDS |
| TGCAGCTTGAAGAAGCTTCA+AGG | 0.422761 | 2.2:+14441221 | MS.gene87268:intron |
| AGATATTGCAAATGAGAAAA+CGG | 0.438542 | 2.2:+14440671 | MS.gene87268:intron |
| AAGACAGGACAAGTAGTAGT+TGG | 0.458371 | 2.2:+14439526 | MS.gene87268:CDS |
| ATTGTTTGATAACTTTGAAA+AGG | 0.460958 | 2.2:+14440938 | MS.gene87268:CDS |
| AGCTTACTATTAGTGACAGT+TGG | 0.481220 | 2.2:-14439715 | None:intergenic |
| TTCTTTGTGCATTTGGAACA+AGG | 0.495526 | 2.2:-14439498 | None:intergenic |
| TGCATTTGATCTTCTTGCAA+TGG | 0.504301 | 2.2:+14440773 | MS.gene87268:CDS |
| TGAGAAGATTTCACTAGCTA+AGG | 0.517657 | 2.2:+14439657 | MS.gene87268:CDS |
| TGCTTAAAGATGTCATGGAC+AGG | 0.522204 | 2.2:+14441293 | MS.gene87268:CDS |
| ATTTGATCTTCTTGCAATGG+CGG | 0.551344 | 2.2:+14440776 | MS.gene87268:CDS |
| ATTGCTGCTTATCTTCAGCT+GGG | 0.551798 | 2.2:-14440896 | None:intergenic |
| ATGGCAAATATTGGAGCCAA+AGG | 0.555680 | 2.2:+14440726 | MS.gene87268:CDS |
| GCACAAAGAACCTTTAAGAC+AGG | 0.560597 | 2.2:+14439511 | MS.gene87268:CDS |
| TAAGCAGCAATTAACTGATG+TGG | 0.578245 | 2.2:+14440908 | MS.gene87268:CDS |
| AGTTATGCTTAAAGATGTCA+TGG | 0.580022 | 2.2:+14441288 | MS.gene87268:CDS |
| GCTCCTCTAACAAATTTGCA+TGG | 0.591211 | 2.2:+14439445 | MS.gene87268:CDS |
| TATCAAGAAGAAACTCTACA+TGG | 0.592066 | 2.2:+14440707 | MS.gene87268:CDS |
| ACACACTCAACTATGTTAGG+AGG | 0.598523 | 2.2:+14440814 | MS.gene87268:CDS |
| ATATTGCAAATGAGAAAACG+GGG | 0.743479 | 2.2:+14440673 | MS.gene87268:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CGATTTAATAAAAAAAAAAT+AGG | - | chr2.2:14440353-14440372 | None:intergenic | 10.0% |
| !! | TTAATAATAAATAAATGCAA+TGG | + | chr2.2:14439999-14440018 | MS.gene87268:intron | 10.0% |
| !!! | ATGAAATTTTGAATATTTAT+AGG | - | chr2.2:14440122-14440141 | None:intergenic | 10.0% |
| !!! | TGAAATTTTGAATATTTATA+GGG | - | chr2.2:14440121-14440140 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTTATTAAATCGA+TGG | + | chr2.2:14440354-14440373 | MS.gene87268:intron | 10.0% |
| !! | AAATATTAATTGTACTATCA+TGG | + | chr2.2:14439952-14439971 | MS.gene87268:intron | 15.0% |
| !! | ACAAAATTCTGAATATTTAT+AGG | + | chr2.2:14440308-14440327 | MS.gene87268:intron | 15.0% |
| !! | ATTCACATAATATTAAATTG+CGG | - | chr2.2:14441166-14441185 | None:intergenic | 15.0% |
| !! | ATTCTATTATATTTAAGCTT+AGG | - | chr2.2:14440511-14440530 | None:intergenic | 15.0% |
| !! | CAAAATTCTGAATATTTATA+GGG | + | chr2.2:14440309-14440328 | MS.gene87268:intron | 15.0% |
| !! | TATAGCTAATTAATTTACAT+AGG | + | chr2.2:14439748-14439767 | MS.gene87268:intron | 15.0% |
| !!! | AAAGTGTGATTTTATTTTAT+AGG | - | chr2.2:14440153-14440172 | None:intergenic | 15.0% |
| !!! | AAGTGTGATTTTATTTTATA+GGG | - | chr2.2:14440152-14440171 | None:intergenic | 15.0% |
| !!! | AATCTTGATCATTATATTTT+TGG | + | chr2.2:14440077-14440096 | MS.gene87268:intron | 15.0% |
| !!! | ATCTTGATCATTATATTTTT+GGG | + | chr2.2:14440078-14440097 | MS.gene87268:intron | 15.0% |
| !! | AATATTATGTGAATAGATGT+TGG | + | chr2.2:14441172-14441191 | MS.gene87268:intron | 20.0% |
| !! | CAATGTAAATGATGATTATA+TGG | + | chr2.2:14440646-14440665 | MS.gene87268:intron | 20.0% |
| !! | TTACTTTAAATGTTAGAGTA+TGG | - | chr2.2:14440474-14440493 | None:intergenic | 20.0% |
| !! | TTTATGTTTCAATTGACATT+TGG | + | chr2.2:14439840-14439859 | MS.gene87268:intron | 20.0% |
| !!! | ATATTTTCCTTTAGCATTTT+AGG | - | chr2.2:14440245-14440264 | None:intergenic | 20.0% |
| !!! | ATTGTTTGATAACTTTGAAA+AGG | + | chr2.2:14440938-14440957 | MS.gene87268:CDS | 20.0% |
| !!! | TATTTTCCTTTAGCATTTTA+GGG | - | chr2.2:14440244-14440263 | None:intergenic | 20.0% |
| !!! | TTTTGGGTTAATTAAGTAAA+TGG | + | chr2.2:14440094-14440113 | MS.gene87268:intron | 20.0% |
| ! | AGATATTGCAAATGAGAAAA+CGG | + | chr2.2:14440671-14440690 | MS.gene87268:intron | 25.0% |
| ! | CATAACTGTATAAAAGAACA+TGG | - | chr2.2:14439900-14439919 | None:intergenic | 25.0% |
| ! | TAGTCCCTGTAAAAAATTTA+CGG | + | chr2.2:14440205-14440224 | MS.gene87268:intron | 25.0% |
| ! | TATAGTTAACTTCATCATGA+TGG | + | chr2.2:14440378-14440397 | MS.gene87268:intron | 25.0% |
| !! | ACATTTGGAACAATTATGAT+TGG | + | chr2.2:14439855-14439874 | MS.gene87268:intron | 25.0% |
| !! | TGTAATTGGAGTTAAAGTTT+TGG | - | chr2.2:14439476-14439495 | None:intergenic | 25.0% |
| !!! | AAAGTGTGACTTTAATTTGT+AGG | + | chr2.2:14440277-14440296 | MS.gene87268:intron | 25.0% |
| !!! | AAGTGTGACTTTAATTTGTA+GGG | + | chr2.2:14440278-14440297 | MS.gene87268:intron | 25.0% |
| !!! | ATCTGTTTACTTTTGAACTA+GGG | + | chr2.2:14440611-14440630 | MS.gene87268:intron | 25.0% |
| !!! | CTTTGTTTCTTTAGTTCTTA+CGG | + | chr2.2:14439624-14439643 | MS.gene87268:CDS | 25.0% |
| !!! | GTATGCTCTTTTTTAAATTG+CGG | + | chr2.2:14440960-14440979 | MS.gene87268:intron | 25.0% |
| !!! | TATCTGTTTACTTTTGAACT+AGG | + | chr2.2:14440610-14440629 | MS.gene87268:intron | 25.0% |
| !!! | TTTGTTTCTTTAGTTCTTAC+GGG | + | chr2.2:14439625-14439644 | MS.gene87268:CDS | 25.0% |
| AAACTCTACATGGCAAATAT+TGG | + | chr2.2:14440717-14440736 | MS.gene87268:CDS | 30.0% | |
| AGTTATGCTTAAAGATGTCA+TGG | + | chr2.2:14441288-14441307 | MS.gene87268:CDS | 30.0% | |
| ATATTGCAAATGAGAAAACG+GGG | + | chr2.2:14440673-14440692 | MS.gene87268:CDS | 30.0% | |
| ATGCTAAAGGAAAATATCAC+AGG | + | chr2.2:14440248-14440267 | MS.gene87268:intron | 30.0% | |
| ATTTCACTAGCTAAGGATAA+TGG | + | chr2.2:14439664-14439683 | MS.gene87268:CDS | 30.0% | |
| CAAAATATTGCAGACAAATG+TGG | + | chr2.2:14441011-14441030 | MS.gene87268:intron | 30.0% | |
| CATAAAGTTGCAAACAAATG+TGG | + | chr2.2:14441084-14441103 | MS.gene87268:intron | 30.0% | |
| CTTATGATTGAAAGTTAGCA+TGG | + | chr2.2:14439921-14439940 | MS.gene87268:intron | 30.0% | |
| GATATTGCAAATGAGAAAAC+GGG | + | chr2.2:14440672-14440691 | MS.gene87268:intron | 30.0% | |
| TATCAAGAAGAAACTCTACA+TGG | + | chr2.2:14440707-14440726 | MS.gene87268:CDS | 30.0% | |
| TGCTAAAGGAAAATATCACA+GGG | + | chr2.2:14440249-14440268 | MS.gene87268:intron | 30.0% | |
| TTAAAGGTTCTTTGTGCATT+TGG | - | chr2.2:14439508-14439527 | None:intergenic | 30.0% | |
| ! | AAAATTTACGGCAGCATTTT+CGG | + | chr2.2:14440217-14440236 | MS.gene87268:intron | 30.0% |
| ! | ATGTTGACGGAAAATTTTAC+AGG | - | chr2.2:14440182-14440201 | None:intergenic | 30.0% |
| ! | CAATATTTTATCGCACAGTT+CGG | - | chr2.2:14440566-14440585 | None:intergenic | 30.0% |
| ! | CACATTTGTCTGCAATATTT+TGG | - | chr2.2:14441013-14441032 | None:intergenic | 30.0% |
| ! | TGTTGACGGAAAATTTTACA+GGG | - | chr2.2:14440181-14440200 | None:intergenic | 30.0% |
| !! | CATGTACTTTGATTTTGACA+AGG | + | chr2.2:14440860-14440879 | MS.gene87268:CDS | 30.0% |
| !!! | GATAATGGATTTTGGATTGA+TGG | + | chr2.2:14439679-14439698 | MS.gene87268:CDS | 30.0% |
| !!! | TAGCTAAGGATAATGGATTT+TGG | + | chr2.2:14439671-14439690 | MS.gene87268:CDS | 30.0% |
| AAGACACACTCAACTATGTT+AGG | + | chr2.2:14440811-14440830 | MS.gene87268:CDS | 35.0% | |
| ACAGGGACTAAAAATGTTGA+CGG | - | chr2.2:14440195-14440214 | None:intergenic | 35.0% | |
| AGCTTACTATTAGTGACAGT+TGG | - | chr2.2:14439718-14439737 | None:intergenic | 35.0% | |
| ATTTGATCTTCTTGCAATGG+CGG | + | chr2.2:14440776-14440795 | MS.gene87268:CDS | 35.0% | |
| CAAGTAGTAGTTGGATTTCT+TGG | + | chr2.2:14439535-14439554 | MS.gene87268:CDS | 35.0% | |
| GACCTATTAGTGAAGTACAA+TGG | + | chr2.2:14440040-14440059 | MS.gene87268:intron | 35.0% | |
| GATCCTTAAAACACTTCCTT+TGG | - | chr2.2:14440745-14440764 | None:intergenic | 35.0% | |
| TAAGCAGCAATTAACTGATG+TGG | + | chr2.2:14440908-14440927 | MS.gene87268:CDS | 35.0% | |
| TACTACTTGTCCTGTCTTAA+AGG | - | chr2.2:14439524-14439543 | None:intergenic | 35.0% | |
| TGAAACACAAGCATGCTATA+AGG | + | chr2.2:14441258-14441277 | MS.gene87268:CDS | 35.0% | |
| TGAAAGTAGACTTGAGTCTT+AGG | - | chr2.2:14440842-14440861 | None:intergenic | 35.0% | |
| TGAGAAGATTTCACTAGCTA+AGG | + | chr2.2:14439657-14439676 | MS.gene87268:CDS | 35.0% | |
| TGCATTTGATCTTCTTGCAA+TGG | + | chr2.2:14440773-14440792 | MS.gene87268:CDS | 35.0% | |
| TGCCATTGTACTTCACTAAT+AGG | - | chr2.2:14440045-14440064 | None:intergenic | 35.0% | |
| TTTAAATTGCGGTTACGTAG+TGG | + | chr2.2:14440971-14440990 | MS.gene87268:intron | 35.0% | |
| ! | TTCTTTGTGCATTTGGAACA+AGG | - | chr2.2:14439501-14439520 | None:intergenic | 35.0% |
| ! | TTTGGAACAAGGCATGTAAT+TGG | - | chr2.2:14439490-14439509 | None:intergenic | 35.0% |
| !! | ACTCCATGCAAATTTGTTAG+AGG | - | chr2.2:14439451-14439470 | None:intergenic | 35.0% |
| !!! | GCTGCCGTAAATTTTTTACA+GGG | - | chr2.2:14440212-14440231 | None:intergenic | 35.0% |
| !!! | TGCTGCCGTAAATTTTTTAC+AGG | - | chr2.2:14440213-14440232 | None:intergenic | 35.0% |
| AAGACAGGACAAGTAGTAGT+TGG | + | chr2.2:14439526-14439545 | MS.gene87268:CDS | 40.0% | |
| ACACACTCAACTATGTTAGG+AGG | + | chr2.2:14440814-14440833 | MS.gene87268:CDS | 40.0% | |
| ATGGCAAATATTGGAGCCAA+AGG | + | chr2.2:14440726-14440745 | MS.gene87268:CDS | 40.0% | |
| GACTTGTGCACTTATCAGTA+AGG | - | chr2.2:14440435-14440454 | None:intergenic | 40.0% | |
| GCTCCTCTAACAAATTTGCA+TGG | + | chr2.2:14439445-14439464 | MS.gene87268:CDS | 40.0% | |
| TGCTTAAAGATGTCATGGAC+AGG | + | chr2.2:14441293-14441312 | MS.gene87268:CDS | 40.0% | |
| TTCGGTCCCTAAAATGCTAA+AGG | + | chr2.2:14440235-14440254 | MS.gene87268:intron | 40.0% | |
| ! | AATTGCTGCTTATCTTCAGC+TGG | - | chr2.2:14440900-14440919 | None:intergenic | 40.0% |
| ! | ATTGCTGCTTATCTTCAGCT+GGG | - | chr2.2:14440899-14440918 | None:intergenic | 40.0% |
| ! | CTATTAGTGACAGTTGGTTC+TGG | - | chr2.2:14439712-14439731 | None:intergenic | 40.0% |
| ! | TTGCGGTCATGTTTGTGTTT+TGG | + | chr2.2:14441049-14441068 | MS.gene87268:intron | 40.0% |
| !! | GCACAAAGAACCTTTAAGAC+AGG | + | chr2.2:14439511-14439530 | MS.gene87268:CDS | 40.0% |
| !!! | GAGCCAAAGGAAGTGTTTTA+AGG | + | chr2.2:14440739-14440758 | MS.gene87268:CDS | 40.0% |
| AATTGCGGCACAAATGTCGT+TGG | - | chr2.2:14441132-14441151 | None:intergenic | 45.0% | |
| ATGTCGTTGGACCACAATTG+CGG | - | chr2.2:14441119-14441138 | None:intergenic | 45.0% | |
| CACAAACATGACCGCAATTG+TGG | - | chr2.2:14441046-14441065 | None:intergenic | 45.0% | |
| GTCAGAGACGTAGACACAAT+TGG | + | chr2.2:14440540-14440559 | MS.gene87268:intron | 45.0% | |
| TGCAGCTTGAAGAAGCTTCA+AGG | + | chr2.2:14441221-14441240 | MS.gene87268:intron | 45.0% | |
| !! | GTGACAGTTGGTTCTGGAAT+AGG | - | chr2.2:14439706-14439725 | None:intergenic | 45.0% |
| !! | GATTTAATAAAAAAAAAATA+GGG | - | chr2.2:14440352-14440371 | None:intergenic | 5.0% |
| GCGGTCAACAACTGCAATTG+CGG | - | chr2.2:14441147-14441166 | None:intergenic | 50.0% | |
| ! | GGTTGATGCGACCACAATTG+CGG | + | chr2.2:14441032-14441051 | MS.gene87268:intron | 50.0% |
| GGCTAATGCAGCCGCAATTG+TGG | + | chr2.2:14441105-14441124 | MS.gene87268:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 14439442 | 14441342 | 14439442 | ID=MS.gene87268 |
| chr2.2 | mRNA | 14439442 | 14441342 | 14439442 | ID=MS.gene87268.t1;Parent=MS.gene87268 |
| chr2.2 | exon | 14439442 | 14439730 | 14439442 | ID=MS.gene87268.t1.exon1;Parent=MS.gene87268.t1 |
| chr2.2 | CDS | 14439442 | 14439730 | 14439442 | ID=cds.MS.gene87268.t1;Parent=MS.gene87268.t1 |
| chr2.2 | exon | 14440673 | 14440959 | 14440673 | ID=MS.gene87268.t1.exon2;Parent=MS.gene87268.t1 |
| chr2.2 | CDS | 14440673 | 14440959 | 14440673 | ID=cds.MS.gene87268.t1;Parent=MS.gene87268.t1 |
| chr2.2 | exon | 14441226 | 14441342 | 14441226 | ID=MS.gene87268.t1.exon3;Parent=MS.gene87268.t1 |
| chr2.2 | CDS | 14441226 | 14441342 | 14441226 | ID=cds.MS.gene87268.t1;Parent=MS.gene87268.t1 |
| Gene Sequence |
| Protein sequence |
