AlfalfaGEDB | MS.gene34272

M. sativa cultivar XinJiangDaYe / MS.gene34272

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0097159 GO:1901363
PFAM: PF07460.14

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34272.t1	XP_013445542.1	96.5	318	11	0	1	318	85	402	3.10E-153	551.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34272.t1	A0A072TRU0	96.5	318	11	0	1	318	85	402	2.3e-153	551.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049149	MS.gene34272	0.807098	5.97E-50	-1.69E-46
MS.gene049150	MS.gene34272	0.84554	3.81E-59	-1.69E-46
MS.gene049151	MS.gene34272	0.806196	9.25E-50	-1.69E-46
MS.gene049153	MS.gene34272	0.845891	3.06E-59	-1.69E-46
MS.gene049284	MS.gene34272	0.805594	1.24E-49	-1.69E-46
MS.gene049346	MS.gene34272	0.849684	2.76E-60	-1.69E-46
MS.gene049351	MS.gene34272	0.882104	1.38E-70	-1.69E-46
MS.gene049356	MS.gene34272	0.851663	7.66E-61	-1.69E-46
MS.gene049369	MS.gene34272	0.814049	1.88E-51	-1.69E-46
MS.gene049426	MS.gene34272	0.81987	9.26E-53	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34272.t1	MTR_8g464010	96.855	318	10	0	1	318	85	402	0.0	626
MS.gene34272.t1	MTR_7g117530	41.538	130	76	0	1	130	102	231	9.47e-25	104

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene34272.t1	AT1G53250	57.463	134	57	0	2	135	105	238	1.15e-46	161
MS.gene34272.t1	AT1G53250	40.000	175	99	3	141	315	185	353	7.13e-20	89.4
MS.gene34272.t1	AT1G53800	41.379	116	68	0	1	116	111	226	9.50e-22	95.9
MS.gene34272.t1	AT1G53800	41.379	116	68	0	1	116	111	226	9.50e-22	95.9
MS.gene34272.t1	AT1G53800	41.379	116	68	0	1	116	107	222	1.01e-21	95.9

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Find 66 sgRNAs with CRISPR-Local

Find 346 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATCCAATTTACTGTGAGT+TGG	0.446177	8.4:-46264274	None:intergenic
AAGAGCGACTGAAGTCACAG+CGG	0.775304	8.4:+46262993	MS.gene34272:CDS
AAGGGAAGGAAACACACTGC+AGG	0.642716	8.4:+46259529	MS.gene34272:CDS
AAGTACCTTGGAATAAGGGA+AGG	0.596523	8.4:+46259515	MS.gene34272:CDS
AATTAGGATGAGAACATTAG+AGG	0.421479	8.4:+46259642	MS.gene34272:CDS
AATTCTGCAGGCAGAGGAAA+AGG	0.466502	8.4:+46263144	MS.gene34272:CDS
ACAGGCTGCTAAAGTCATAA+AGG	0.374651	8.4:+46264351	MS.gene34272:CDS
ACTGAAGTCACAGCGGGCAG+GGG	0.520282	8.4:+46263000	MS.gene34272:CDS
ACTTGGCTCTAAATTAACTA+AGG	0.501762	8.4:+46263537	MS.gene34272:CDS
AGAAGTGAAGTAGCTAGAGA+AGG	0.590861	8.4:+46264229	MS.gene34272:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCAATTTACTGTGAGT+TGG	-	chr8.4:46264277-46264296	None:intergenic	30.0%
AAGAGAGAGTTAAAATCTGT+GGG	-	chr8.4:46262076-46262095	None:intergenic	30.0%
AATTAGCATCTGACTAATGA+GGG	-	chr8.4:46259934-46259953	None:intergenic	30.0%
AATTAGGATGAGAACATTAG+AGG	+	chr8.4:46259642-46259661	MS.gene34272:CDS	30.0%
AGGATAGAAGCAGATTAAAA+AGG	+	chr8.4:46263892-46263911	MS.gene34272:intron	30.0%
ATTGTTGAAATGATTTAGGC+AGG	+	chr8.4:46259760-46259779	MS.gene34272:intron	30.0%
GACCTTATCTTTAATCTATG+TGG	+	chr8.4:46261092-46261111	MS.gene34272:intron	30.0%
GATAGGCATGAAATCATATT+AGG	+	chr8.4:46260483-46260502	MS.gene34272:intron	30.0%
GCTAGCAAAAACATGATATA+CGG	+	chr8.4:46260782-46260801	MS.gene34272:intron	30.0%
GCTAGCAAAAACATGATATT+CGG	+	chr8.4:46260950-46260969	MS.gene34272:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8.4	gene	46259478	46264387	46259478	ID=MS.gene34272
chr8.4	mRNA	46259478	46264387	46259478	ID=MS.gene34272.t1;Parent=MS.gene34272
chr8.4	exon	46259478	46259550	46259478	ID=MS.gene34272.t1.exon1;Parent=MS.gene34272.t1
chr8.4	CDS	46259478	46259550	46259478	ID=cds.MS.gene34272.t1;Parent=MS.gene34272.t1
chr8.4	exon	46259629	46259681	46259629	ID=MS.gene34272.t1.exon2;Parent=MS.gene34272.t1
chr8.4	CDS	46259629	46259681	46259629	ID=cds.MS.gene34272.t1;Parent=MS.gene34272.t1
chr8.4	exon	46260057	46260094	46260057	ID=MS.gene34272.t1.exon3;Parent=MS.gene34272.t1
chr8.4	CDS	46260057	46260094	46260057	ID=cds.MS.gene34272.t1;Parent=MS.gene34272.t1
chr8.4	exon	46262946	46263558	46262946	ID=MS.gene34272.t1.exon4;Parent=MS.gene34272.t1
chr8.4	CDS	46262946	46263558	46262946	ID=cds.MS.gene34272.t1;Parent=MS.gene34272.t1
chr8.4	exon	46264208	46264387	46264208	ID=MS.gene34272.t1.exon5;Parent=MS.gene34272.t1
chr8.4	CDS	46264208	46264387	46264208	ID=cds.MS.gene34272.t1;Parent=MS.gene34272.t1

Gene Sequence

>MS.gene34272

ATGAGGAGAATGAGAATAGGACTAGCAAACAAAGGAAAAGTACCTTGGAATAAGGGAAGGAAACACACTGCAGGTACTTTACATTCGAGTTTATTTTACCATTTTTGGATCATTTTGTTGTTTAAGTGATTAATTATGAAACCAATTGCAGAGACCCGTGAGCGAATTAGGATGAGAACATTAGAGGCTTTGAAGGACCCCAAGGTGAAGTCAAGTAAGAGTCTTTGTTTAGATTGGAGTCTTCCTTTATTTTTGTGTTCACATCACAGTTTGACATGCCTTATTGTTGAAATGATTTAGGCAGGGTTTTAAATAGAGGTTGCGGAGAATCGCAGTTAAATGTGGCCTCAATTGCGGTTTTGGGAACATTAAAAACAGTTATGTTGCAGTGACCACTATTTAAAACCTTGATTTTAGGACTCTGAGATACTATTTTGGTTATGTGGTTCTTTTCCCTCATTAGTCAGATGCTAATTGGTTTTGCAATTTTTTTTTTCTTTTACTTGGTAGTTCCTGGCCCATGATTCACTTCTGGTCATTCATTATATTCATTTTCCCCTTCAACTAAAAAATTTTCAGGTGAAGAAGAAGATGGCTGAACATCCCCGTTGTCATAGGTAAACACAAGACCTTAAAAAAAAAAATATTATGTACGCCTCCTCAAGACAGATTGTAAGCTTATACCCTGCAAAATCATGTTTATGTTATGCATGTAAAAACAAATTATGAAAATTATCAAGGATTAATTGAGAAGGAAAAATTATTTGGTCTTGAACTCTTCAATTTCCATAATTTATTAATATTTCACACACAAGAAAGAATAATCATAATCCTTTGTTAATGTAACCAAAAAACATATCCTTTGTTAATAACATATCTATCTCTCTTTATAAGATATTAGGTTTTTATATTGGGCCTACCCTCACGCCCAGGATTGAACATTTGGAGCGTGACAAGAGTGGCTTGATAGCAAAAACCTGATAGTTGGTGACCCAACGGGTCCTGGATAGGCATGAAATCATATTAGGTTTTTATATTGGACCTAACTCAACCGTACGCAACCAACTTGTAGTGTGACCGGACTCAACCTCACGCCCAGGATTGAACATTTGGAGCGTGACCGGAGTGGTTAGATAGCAAAAACCTGATAGTCGGTGACCCAACGGGTCCTGGATAGGCACTGATATCATATTAGGTTTTTATATTGGTCCTAACTCAACCTTACGCAACGAACATGAAGCGTGACCGGACTCAACCTCACGCCCAGAATTGAACATTTGGAGCGTGACCGGAGTGGCTCGATAGCTAGCAAAAACATGATATACGGTGACCCAACGGGTCCTGGATACGCACTAATAGTTAGGTTTTTATATTGGTCCTAACTCAACCTTACGCAACGAACATGAAGCGTGACTGGACTCAACCTCACGCCCAGAATTGAACATTTGGAGCGTGACCGGAGTGGCTCGATAGCTAGCAAAAACATGATATTCGGTGACCCAACGGGTCCTGGATACGCACTGATAGCATATTAGGTTTTTATATTGGACCTAACACAACCTTACGCAACCAACTTGTAAGGTCAGCGGTGCCTCTCTTTATAAACTTTGGTCAGACCTTATCTTTAATCTATGTGGGACTTGGTTATTCCAATAATATGGAATGTTCCTACTGTACATAATTCTGGTGGAAGAGCACAGGCAACATGCTTGTGATGATCGCATAGTTTTATTGTATGTTACTTGGCTTGGAGAAACCGATTGTAACATATACTACTAAAAGTAACAATGTTTTTTAGGATATATAGCATCTGAATTTGCAAGTTATTGCTGTTTTTTTTTCTCTAAGGGATATATTCATGGGCTTATTTGTCTAAACCTTGAGGTCATTCTATACTTTTATCCCAATTTCTGTTACCCTTATTAATATAAGGGCTGCCTGGTGCACTAAGGGTGTGTTTGGTTACGAAGAGAAATTTTGAAGAGAGAAGTAGGTAAGAGAGAGTTTGAGAAGAGAGAAAAAGGTGAGAGATTGAGTAGATTTGATGTAATGTTTGGTAGAAGAGAAAGATAAGAGATATAGAAGAGAGAGAATAATGTAATTGCTTTTAAAGGACAAAAATGCCCTTAAACACAATAAAAAGAAACTAAATAATTGTTTGGAGTAGAAAAACATAATTTATGCTCCCTTTTATGAAAAAAATAATTTATATTACCTGTAATACATTTTTTTATCAACGTTAACTAAAATCTTCATTTGAATTAATTAAAAAATGAATAATTTTTTTATTAAGTTATAGTACGGAAGTGTGGTTAATTTTTTTATAGTACGTAAGAAAATAAGTTAATTTTTTAAGACGGAAGTGTGGTTCATATTATTTTTGTTGCTAAGTAAATTTATTTTGAGAATTTTTTACTATGAAATTAATTAAAAGTGCAATTAACTTCACCTACAGCACAAGTGCACAACCATTCAGTTATAAATTTACGTTTTTGTATTTTCTTGATGCAATGGAGGGTATAATTGGAAAATTGCAAAAAATGCAACTCTCGCCTGTTTCTTCTCATCCATGAGAAGACTCAAAAATCAGTGGGCCCCACAGATTTTAACTCTCTCTTCTCTCTTTCTCACCACAACCAAACAAGAGAAGTGTAGGACTTGTCTCCTACTTCTCTCTCTTCAACTTCTCTCTCTCCTTTTTCTCCTCTACCAAACACAGTGTAAAGTCCCGCATACGCAAGGTCCGGGAAGGGGTCTCATCAATTGGTGTATTGTACACAGCCTTACCTTGTTTTTTTTTACACAAGAGGTTGTTTCTAGGATTTGAACCCGTGACTTTTCAGTCACGTGACAACAACTTTACCGTTGCACCAAGGTTGTTACCCTTATGTCTGAAAAATATTCAAAGTTGTTTGATGTTTTCTCTTGTAGCCACTTCAATAATATAATTAAGAACAAAAGAAACAGAAATCCATGCATATTTCACTTTTTTTTTTTCTGCAAAAGTATATTATAGGGAGTACAAGGGATACTCAAAACCAATTACAAACAAATGAGAAATCAAACAAGAATCAGACCACCTCTCGATCATTTCACTGTGTTTTCAATAAGGAGTATGCTCTATTTCTATCATTATCTGATAAATAAAGTAAGATTAAAATCAATGATAATGAATACAAGATCATAACAAATTATTCGGACTCAGATGATCAAGCCAACTAGAAACTAATTTCAATCTAGTTACAAACTTCCTTCTAATAGTAATATATTCTACTAAGAAAATTGTTCTAGTATTGTAGTTGCAGCGAGGTATTGTTCGTCCTGTTGGTTTCAATTAGGTATACTATATTCTTACTTGTAAATATTGTTAGACAGAAATTTTTAGGTTGTCTTGCTCTTTGGCATGAATAACAATAGAATGTAGCCAATGGCAATTCATTCTCCAATCTTTTACCAACCTTCCTGCAGTGATCAGATCAAGGAAAAGATAAGTTATTCTCTGAGACGTGTCTGGGAAGAGCGACTGAAGTCACAGCGGGCAGGGGAGCAGTTTTTCCTCTTATGGGAACAAAACATAGCAAATGCAGCCAAGAAAGGAGGGAGTGGTCAAGTTGAGTTAGATTGGGACAGCTATGATAAGATAAAAGAACAACTTGAGTTCCACCGAATTCTGCAGGCAGAGGAAAAGGAAAAAGAAAAGCTGATGACCATTGTTGGAACAAATAAATTATTTCATTTGTGGACGGAAATCATAGCCAAATCAGCAAAGAAAGGAGGGAGTGGAGAAGAAGAACTTGATTGGGATAGCTACGACAAGATAAAAGAAGAAATGATTCTTCTCAATCAGCTTCAGCGTATTACAGAGAAGGCAAAGGCCAAAGAGATGGCCAAAATAAAAGCGGAGAAAGAGGCACAGATAAAAGCGATAAAAAAGGTTATGCTCACTCAAAAGAGAAAAGATCTCCGAGAGAGGACAAAAGCTAGAGAGAATATAAAGAATCAACCATACAAAAATGCAGAGGAAGACAAATGTGCCGAGGATGTTACTCAAGAATTCAAACTTGGCTCTAAATTAACTAAGGTAAGCATTCAATATTTTCTCGTTTATTGGCTGTTTATAAATGCAACATGATGAGTCAATTAAAAATGAGATTAGTGTAAGTATTGAGATGGCAGAATGAATTAAATCTCAGCTAAGTTGCAATTATAGTTTAGTGAAAGGCAAAGGAGAATACTGAGCAAAGTTGGTTAGTTTCTCATTTTTGGACTTATAGAAATAGGAATTTTAATTGTTGAATCCATTTTCTGTCAAGAGATTAACTGCTTGGTTGCTTTGTCTGTTGAAATTTGAAAACACTTGCATTATTGGTTTGACTTATTAGAAACTTAATCATGATAGCCTGTATTTGGATTAAGGATAGAAGCAGATTAAAAAGGCATTTATCTTAGGAATATGCCATTTTGAAAATAGTATTTTGAGCTTAATTGTTATATTCAATTGAGTATTTTCAGCCCGACCCTTTTTTTTGTTATTTATTATGTATGTAATCCTCATTGCTACTTTATTTTTAATAAAAATAAAAACCAAGGGAAAGGTGAAATTTCTATTAATGAAAGTGGCACAAACGACGGTATGATTTCCTTTTAGCTTTTTTGGTGGTGGCCAGGGTTTGAACTCTGGACCTTGCATATTTTAGCTACTAATGATGGTATGTTTTTCCTGTCTTCAGAATCATGTAAATAACATCATCAGAAGTGAAGTAGCTAGAGAAGGAGACGTTATTTATTCCAATTTTCCAACTCACAGTAAATTGGATTTAGAGCTTATCAGAAGAGAGAAAATGCAGAAAAAAGTGTCACTTGCAGATCAGATACAGGCTGCTAAAGTCATAAAGGGGAAACTCCATTGA

Protein sequence

>MS.gene34272.t1

MRRMRIGLANKGKVPWNKGRKHTAETRERIRMRTLEALKDPKVKKKMAEHPRCHSDQIKEKISYSLRRVWEERLKSQRAGEQFFLLWEQNIANAAKKGGSGQVELDWDSYDKIKEQLEFHRILQAEEKEKEKLMTIVGTNKLFHLWTEIIAKSAKKGGSGEEELDWDSYDKIKEEMILLNQLQRITEKAKAKEMAKIKAEKEAQIKAIKKVMLTQKRKDLRERTKARENIKNQPYKNAEEDKCAEDVTQEFKLGSKLTKNHVNNIIRSEVAREGDVIYSNFPTHSKLDLELIRREKMQKKVSLADQIQAAKVIKGKLH