AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene28311


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28311.t1 MTR_4g068280 93.548 217 14 0 1 217 2 218 5.08e-148 410
MS.gene28311.t1 MTR_3g009150 35.664 143 87 3 71 210 61 201 1.12e-24 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene28311.t1 AT2G30695 32.979 188 112 5 25 210 19 194 1.08e-24 96.7
MS.gene28311.t1 AT2G30695 32.979 188 112 5 25 210 19 194 1.08e-24 96.7
MS.gene28311.t1 AT2G30695 32.979 188 112 5 25 210 19 194 1.08e-24 96.7

Find 46 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACAGCAGGAAAAGAATT+TGG 0.180310 4.4:-38972306 MS.gene28311:CDS
CCTATTTCAGCTGTTAATTC+AGG 0.238605 4.4:-38974809 MS.gene28311:intron
CACTCCTAGTTTAATGGAAT+TGG 0.243982 4.4:+38975039 None:intergenic
AACTCTCACTCCTAGTTTAA+TGG 0.267424 4.4:+38975033 None:intergenic
AGTGCTCTTGATTTAGCATT+TGG 0.321275 4.4:+38974995 None:intergenic
CCTGAATTAACAGCTGAAAT+AGG 0.326847 4.4:+38974809 None:intergenic
CCGTACGGCCTAGGTTTATA+AGG 0.338442 4.4:+38973920 None:intergenic
CTGGTGGGGCCGTACGGCCT+AGG 0.356174 4.4:+38973911 None:intergenic
CCTGGATTTCGCATGCAAAA+AGG 0.372253 4.4:-38973886 MS.gene28311:CDS
ACTTCCTTCTACAGATGCTT+GGG 0.399626 4.4:-38972545 MS.gene28311:CDS
CTTCCCCAAGCATCTGTAGA+AGG 0.423340 4.4:+38972541 None:intergenic
ATCTGTAGAAGGAAGTCTTT+CGG 0.427957 4.4:+38972552 None:intergenic
TAAGAAGGCTGAAATATCAT+TGG 0.436865 4.4:+38974662 None:intergenic
GACTTCCTTCTACAGATGCT+TGG 0.439445 4.4:-38972546 MS.gene28311:CDS
TGTATCTTATTATCATCTCC+TGG 0.439751 4.4:+38974615 None:intergenic
CAAAACAAGTTATTCACCTT+CGG 0.464607 4.4:+38972254 None:intergenic
CTCTGTCTCCATGGAGAAGA+AGG 0.465388 4.4:-38974958 MS.gene28311:intron
TTTCTCTGTCTCTGTCTCCA+TGG 0.467005 4.4:-38974967 MS.gene28311:CDS
GCTCTTGATTTAGCATTTGG+AGG 0.470798 4.4:+38974998 None:intergenic
TAGTTTAATGGAATTGGAGT+TGG 0.483927 4.4:+38975045 None:intergenic
TGCATGCGAAATCCAGGCAC+TGG 0.488521 4.4:+38973892 None:intergenic
CGTACGGCCCCACCAGTGCC+TGG 0.488782 4.4:-38973904 MS.gene28311:CDS
ATTTGGTACCTTCTTCTCCA+TGG 0.498772 4.4:+38974950 None:intergenic
CAGGCACTGGTGGGGCCGTA+CGG 0.501017 4.4:+38973905 None:intergenic
GGCCTAGGTTTATAAGGATC+CGG 0.507409 4.4:+38973926 None:intergenic
TGCGAAATCCAGGCACTGGT+GGG 0.515069 4.4:+38973896 None:intergenic
TACAGTGGCATCAGTTAAGA+AGG 0.519734 4.4:+38974647 None:intergenic
GCCACTGTAGTTGCAGAACC+AGG 0.531242 4.4:-38974633 MS.gene28311:CDS
TGTCTGAGAGTTGTTCCATT+GGG 0.532775 4.4:+38974842 None:intergenic
AAACACAGAAGGTATTTGAC+CGG 0.556911 4.4:-38973945 MS.gene28311:CDS
CCTTATAAACCTAGGCCGTA+CGG 0.559295 4.4:-38973920 MS.gene28311:CDS
CTTAGATGCAAAGGACAAGA+AGG 0.565021 4.4:-38972367 MS.gene28311:CDS
CCAGGAAAACTTAGATGCAA+AGG 0.568120 4.4:-38972376 MS.gene28311:intron
GATAGTCTCTCTACTCCCAA+TGG 0.569081 4.4:-38974857 MS.gene28311:CDS
GTTTAAATGGCAGTTAAGAG+TGG 0.573603 4.4:-38973983 MS.gene28311:intron
AACTCCAATTCCATTAAACT+AGG 0.579547 4.4:-38975043 MS.gene28311:CDS
CAGTTAAGAGTGGACTTGAC+TGG 0.592282 4.4:-38973973 MS.gene28311:CDS
ATGCGAAATCCAGGCACTGG+TGG 0.601200 4.4:+38973895 None:intergenic
TGCTCCAGGGAAATCATCAA+AGG 0.608014 4.4:-38972897 MS.gene28311:intron
CTTCCTTCTACAGATGCTTG+GGG 0.611133 4.4:-38972544 MS.gene28311:CDS
ATGTCTGAGAGTTGTTCCAT+TGG 0.611253 4.4:+38974841 None:intergenic
GACTGGTGTTCAAACACAGA+AGG 0.630186 4.4:-38973956 MS.gene28311:CDS
GCGAAATCCAGGCACTGGTG+GGG 0.648008 4.4:+38973897 None:intergenic
GACCGGATCCTTATAAACCT+AGG 0.648713 4.4:-38973928 MS.gene28311:CDS
TCCTGGTTCTGCAACTACAG+TGG 0.653749 4.4:+38974632 None:intergenic
AGAAATACTCAATTGTACCA+TGG 0.664939 4.4:-38972493 MS.gene28311:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATATTTTACATGATAAA+AGG + chr4.4:38973227-38973246 None:intergenic 10.0%
!! AAGAATGAATGAATAATTTA+TGG + chr4.4:38974526-38974545 None:intergenic 15.0%
!! AAGTAATTAAGTTAAAATTC+AGG + chr4.4:38974385-38974404 None:intergenic 15.0%
!! AGTAATTAAGTTAAAATTCA+GGG + chr4.4:38974384-38974403 None:intergenic 15.0%
!!! AATATATATTTGAAGCAATT+TGG + chr4.4:38972397-38972416 None:intergenic 15.0%
!!! TCAGGTTATTATTATTTTTA+TGG - chr4.4:38972536-38972555 MS.gene28311:CDS 15.0%
!! AAAGTATGAATCATCATAAT+AGG + chr4.4:38973525-38973544 None:intergenic 20.0%
!! AAGTATGAATCATCATAATA+GGG + chr4.4:38973524-38973543 None:intergenic 20.0%
!! AGAAACAAATTAAATCAGAT+AGG + chr4.4:38972880-38972899 None:intergenic 20.0%
!! AGATATATTATCATGATTCA+TGG + chr4.4:38974682-38974701 None:intergenic 20.0%
!! GAAACAAATTAAATCAGATA+GGG + chr4.4:38972879-38972898 None:intergenic 20.0%
!! GACAAATAACAAGTTTATAT+AGG + chr4.4:38974278-38974297 None:intergenic 20.0%
!! GATATATTATCATGATTCAT+GGG + chr4.4:38974681-38974700 None:intergenic 20.0%
!! TATCCTTTAATCACATATAA+AGG + chr4.4:38972570-38972589 None:intergenic 20.0%
!! TTTCCTTTATATGTGATTAA+AGG - chr4.4:38972564-38972583 MS.gene28311:intron 20.0%
!!! ATATTTTACATGATAAAAGG+AGG + chr4.4:38973224-38973243 None:intergenic 20.0%
! AAAATGTGTTTATAAGTGAG+AGG - chr4.4:38972966-38972985 MS.gene28311:intron 25.0%
! AAATACAGGAAGTGATAAAA+TGG + chr4.4:38974058-38974077 None:intergenic 25.0%
! AATAACAAGTTTATATAGGC+AGG + chr4.4:38974274-38974293 None:intergenic 25.0%
! AATACAGGAAGTGATAAAAT+GGG + chr4.4:38974057-38974076 None:intergenic 25.0%
! ATAACAAGTTTATATAGGCA+GGG + chr4.4:38974273-38974292 None:intergenic 25.0%
! TCTTAACAAAAGTAACATAG+TGG + chr4.4:38972919-38972938 None:intergenic 25.0%
! TGAGATAAAACTTAATCTCA+GGG + chr4.4:38974601-38974620 None:intergenic 25.0%
! TTATGTTATTCTTGCTTTGT+AGG - chr4.4:38972619-38972638 MS.gene28311:intron 25.0%
! TTGAGATAAAACTTAATCTC+AGG + chr4.4:38974602-38974621 None:intergenic 25.0%
!! ATTTTATCACTTCCTGTATT+TGG - chr4.4:38974057-38974076 MS.gene28311:intron 25.0%
!! TGTATTTTCTTGATCATCAA+AGG - chr4.4:38973937-38973956 MS.gene28311:CDS 25.0%
!! TTTTGTTAAGAGTCTTACAT+CGG - chr4.4:38972928-38972947 MS.gene28311:intron 25.0%
!!! TTTACTGGTTTTCTCATAAT+TGG + chr4.4:38974194-38974213 None:intergenic 25.0%
!!! TTTTTTCACTAACCAAATAC+AGG + chr4.4:38974072-38974091 None:intergenic 25.0%
AAACAAAGGTTCTCACAATA+TGG + chr4.4:38973041-38973060 None:intergenic 30.0%
AACTCCAATTCCATTAAACT+AGG - chr4.4:38972284-38972303 MS.gene28311:CDS 30.0%
AATACATGATGCAAATGTGA+AGG + chr4.4:38973923-38973942 None:intergenic 30.0%
AATTCTGAACTATGATGAAC+AGG + chr4.4:38974338-38974357 None:intergenic 30.0%
ACTTTATAAGCTCCATTTGT+TGG - chr4.4:38973833-38973852 MS.gene28311:intron 30.0%
AGAAATACTCAATTGTACCA+TGG - chr4.4:38974834-38974853 MS.gene28311:CDS 30.0%
ATTCTTCATCCTCGATTAAT+CGG - chr4.4:38972850-38972869 MS.gene28311:intron 30.0%
CATGGCTGATTATACAAAAA+AGG - chr4.4:38974852-38974871 MS.gene28311:CDS 30.0%
CCAAAAAATTGAAAAGTTGC+AGG + chr4.4:38973890-38973909 None:intergenic 30.0%
GAGTTTGACATATTGTGATA+GGG - chr4.4:38973569-38973588 MS.gene28311:intron 30.0%
GCTTCAGTATAAACAAATTG+TGG - chr4.4:38973153-38973172 MS.gene28311:intron 30.0%
TAAGAAGGCTGAAATATCAT+TGG + chr4.4:38972668-38972687 None:intergenic 30.0%
TAGTTTAATGGAATTGGAGT+TGG + chr4.4:38972285-38972304 None:intergenic 30.0%
TGAGAAAACCAGTAAATGAA+AGG - chr4.4:38974198-38974217 MS.gene28311:intron 30.0%
TGAGTTTGACATATTGTGAT+AGG - chr4.4:38973568-38973587 MS.gene28311:intron 30.0%
TGGTTATCTTGTGGTTTAAA+TGG - chr4.4:38973331-38973350 MS.gene28311:intron 30.0%
TGTATCTTATTATCATCTCC+TGG + chr4.4:38972715-38972734 None:intergenic 30.0%
TTTCGTTTCCTTTCATTTAC+TGG + chr4.4:38974209-38974228 None:intergenic 30.0%
TTTGTTTATACTGAAGCTTC+AGG + chr4.4:38973150-38973169 None:intergenic 30.0%
! AGGATAAGGGTTTTTAAATG+GGG + chr4.4:38973725-38973744 None:intergenic 30.0%
! ATAAGATTAGTTCAGAAGCA+AGG + chr4.4:38972603-38972622 None:intergenic 30.0%
! CCTGCAACTTTTCAATTTTT+TGG - chr4.4:38973887-38973906 MS.gene28311:CDS 30.0%
! GAGGATAAGGGTTTTTAAAT+GGG + chr4.4:38973726-38973745 None:intergenic 30.0%
! TAAGATTAGTTCAGAAGCAA+GGG + chr4.4:38972602-38972621 None:intergenic 30.0%
! TGAGGATAAGGGTTTTTAAA+TGG + chr4.4:38973727-38973746 None:intergenic 30.0%
! TTTTACATGATAAAAGGAGG+AGG + chr4.4:38973221-38973240 None:intergenic 30.0%
! TTTTCAAACTACATCAAGCA+AGG + chr4.4:38972428-38972447 None:intergenic 30.0%
!! ACTTGTTATTTGTCTCTTGT+TGG - chr4.4:38974284-38974303 MS.gene28311:intron 30.0%
!! GCATTGATGTTTTGTAACAA+GGG + chr4.4:38973868-38973887 None:intergenic 30.0%
!! TGAAAATAGAAGTGTTTCCT+TGG - chr4.4:38973965-38973984 MS.gene28311:CDS 30.0%
!! TTAGCTTGTGTTCTTTACAA+AGG - chr4.4:38974017-38974036 MS.gene28311:intron 30.0%
!! TTTTTAGTGTGTCTAGAATG+TGG + chr4.4:38973779-38973798 None:intergenic 30.0%
!!! CTTTTTTGTATAATCAGCCA+TGG + chr4.4:38974854-38974873 None:intergenic 30.0%
AACTCTCACTCCTAGTTTAA+TGG + chr4.4:38972297-38972316 None:intergenic 35.0%
AAGGTTCTCACAATATGGTT+TGG + chr4.4:38973036-38973055 None:intergenic 35.0%
ACATATTGTGATAGGGACTT+GGG - chr4.4:38973576-38973595 MS.gene28311:intron 35.0%
AGGTTCTCACAATATGGTTT+GGG + chr4.4:38973035-38973054 None:intergenic 35.0%
AGTGAAAAAATCCACCTTGT+GGG - chr4.4:38974082-38974101 MS.gene28311:intron 35.0%
AGTGCTCTTGATTTAGCATT+TGG + chr4.4:38972335-38972354 None:intergenic 35.0%
ATCTGTAGAAGGAAGTCTTT+CGG + chr4.4:38974778-38974797 None:intergenic 35.0%
CAAATGCTAATTACATCGAG+AGG - chr4.4:38974247-38974266 MS.gene28311:intron 35.0%
CACTCCTAGTTTAATGGAAT+TGG + chr4.4:38972291-38972310 None:intergenic 35.0%
CATCTCACATTACTTGATGT+GGG + chr4.4:38973621-38973640 None:intergenic 35.0%
CCTATTTCAGCTGTTAATTC+AGG - chr4.4:38972518-38972537 MS.gene28311:CDS 35.0%
CCTGAATTAACAGCTGAAAT+AGG + chr4.4:38972521-38972540 None:intergenic 35.0%
CTCAAAAAATCATTCACAGC+AGG - chr4.4:38975009-38975028 MS.gene28311:CDS 35.0%
GTTTAAATGGCAGTTAAGAG+TGG - chr4.4:38973344-38973363 MS.gene28311:intron 35.0%
TAATCTGCTCAGGTAAACAA+AGG + chr4.4:38973055-38973074 None:intergenic 35.0%
TAGTGAAAAAATCCACCTTG+TGG - chr4.4:38974081-38974100 MS.gene28311:intron 35.0%
TCATAATTGGACTGCATATC+TGG + chr4.4:38974181-38974200 None:intergenic 35.0%
TCTTTACAAAGGAAAGACCT+TGG - chr4.4:38974028-38974047 MS.gene28311:intron 35.0%
TTCACAGCAGGAAAAGAATT+TGG - chr4.4:38975021-38975040 MS.gene28311:CDS 35.0%
TTTAACAGAGAAATCCCACA+AGG + chr4.4:38974099-38974118 None:intergenic 35.0%
TTTCGCAGAAAAATGGTCAT+CGG + chr4.4:38973802-38973821 None:intergenic 35.0%
! ATCTAAGTTTTCCTGGAATC+GGG + chr4.4:38974947-38974966 None:intergenic 35.0%
! CATCTAAGTTTTCCTGGAAT+CGG + chr4.4:38974948-38974967 None:intergenic 35.0%
! GATAAGGGTTTTTAAATGGG+GGG + chr4.4:38973723-38973742 None:intergenic 35.0%
! GCTCTTATTTCGCAGAAAAA+TGG + chr4.4:38973809-38973828 None:intergenic 35.0%
! GGATAAGGGTTTTTAAATGG+GGG + chr4.4:38973724-38973743 None:intergenic 35.0%
! TATTCACCTTCGGAGTTTTT+AGG + chr4.4:38975066-38975085 None:intergenic 35.0%
! TCGTTGAAGTTGACTTTGTT+AGG - chr4.4:38974737-38974756 MS.gene28311:intron 35.0%
!! AAACACAGAAGGTATTTGAC+CGG - chr4.4:38973382-38973401 MS.gene28311:intron 35.0%
!! GGATTGATTTGGTTATCTTG+TGG - chr4.4:38973322-38973341 MS.gene28311:intron 35.0%
!! TTTCTAGTAACCTGCTGTTT+TGG - chr4.4:38973299-38973318 MS.gene28311:intron 35.0%
!!! GGCATTGATGTTTTGTAACA+AGG + chr4.4:38973869-38973888 None:intergenic 35.0%
!!! TTCTAGTAACCTGCTGTTTT+GGG - chr4.4:38973300-38973319 MS.gene28311:intron 35.0%
AAATCAATCCCCAAAACAGC+AGG + chr4.4:38973312-38973331 None:intergenic 40.0%
AAGTGTTTCCTTGGTATTCG+TGG - chr4.4:38973974-38973993 MS.gene28311:intron 40.0%
ACATTACTTGATGTGGGACT+TGG + chr4.4:38973615-38973634 None:intergenic 40.0%
ACTTCCTTCTACAGATGCTT+GGG - chr4.4:38974782-38974801 MS.gene28311:intron 40.0%
AGTGATAAAATGGGCATCCA+AGG + chr4.4:38974048-38974067 None:intergenic 40.0%
ATAGGGACTTGGGTATTATG+GGG - chr4.4:38973586-38973605 MS.gene28311:intron 40.0%
ATGTCTGAGAGTTGTTCCAT+TGG + chr4.4:38972489-38972508 None:intergenic 40.0%
ATTGAGCCTAAAAACTCCGA+AGG - chr4.4:38975057-38975076 MS.gene28311:CDS 40.0%
ATTTGGTACCTTCTTCTCCA+TGG + chr4.4:38972380-38972399 None:intergenic 40.0%
CAAGCAACTCTTGAGGATAA+GGG + chr4.4:38973738-38973757 None:intergenic 40.0%
CATTACTTGATGTGGGACTT+GGG + chr4.4:38973614-38973633 None:intergenic 40.0%
CCAGGAAAACTTAGATGCAA+AGG - chr4.4:38974951-38974970 MS.gene28311:intron 40.0%
CTTAGATGCAAAGGACAAGA+AGG - chr4.4:38974960-38974979 MS.gene28311:CDS 40.0%
GACATATTGTGATAGGGACT+TGG - chr4.4:38973575-38973594 MS.gene28311:intron 40.0%
GATAAAAGGAGGAGGCTAAA+GGG + chr4.4:38973213-38973232 None:intergenic 40.0%
GATAGGGACTTGGGTATTAT+GGG - chr4.4:38973585-38973604 MS.gene28311:intron 40.0%
GCATCTCACATTACTTGATG+TGG + chr4.4:38973622-38973641 None:intergenic 40.0%
GCTCTTGATTTAGCATTTGG+AGG + chr4.4:38972332-38972351 None:intergenic 40.0%
GCTTCAATTCTAATCTGCTC+AGG + chr4.4:38973065-38973084 None:intergenic 40.0%
GGGATTTCTCTGTTAAACCT+TGG - chr4.4:38974102-38974121 MS.gene28311:intron 40.0%
GTCTTACATCGGATGAGATA+AGG - chr4.4:38972939-38972958 MS.gene28311:intron 40.0%
TAACGCAACCTCTACAAAAC+CGG + chr4.4:38973010-38973029 None:intergenic 40.0%
TACAGTGGCATCAGTTAAGA+AGG + chr4.4:38972683-38972702 None:intergenic 40.0%
TATCCATGACAGTCACATAC+AGG + chr4.4:38974892-38974911 None:intergenic 40.0%
TCAAGCAACTCTTGAGGATA+AGG + chr4.4:38973739-38973758 None:intergenic 40.0%
TGAGATGCTTTGTGATAGCT+AGG - chr4.4:38973634-38973653 MS.gene28311:intron 40.0%
TGATAAAAGGAGGAGGCTAA+AGG + chr4.4:38973214-38973233 None:intergenic 40.0%
TGATAGGGACTTGGGTATTA+TGG - chr4.4:38973584-38973603 MS.gene28311:intron 40.0%
TGTCTGAGAGTTGTTCCATT+GGG + chr4.4:38972488-38972507 None:intergenic 40.0%
! ACATTTGATTTCCCGATTCC+AGG - chr4.4:38974933-38974952 MS.gene28311:intron 40.0%
! CCTTTGCATCTAAGTTTTCC+TGG + chr4.4:38974954-38974973 None:intergenic 40.0%
! TAGTGTGTCTAGAATGTGGT+TGG + chr4.4:38973775-38973794 None:intergenic 40.0%
!! CAAAACCGGCTTGTAAATTG+AGG + chr4.4:38972996-38973015 None:intergenic 40.0%
!! TTTACAAGCCGGTTTTGTAG+AGG - chr4.4:38972999-38973018 MS.gene28311:intron 40.0%
!!! GTGGTCTTGTTCTTGGTTTT+AGG - chr4.4:38973993-38974012 MS.gene28311:intron 40.0%
!!! TCTAGTAACCTGCTGTTTTG+GGG - chr4.4:38973301-38973320 MS.gene28311:intron 40.0%
!!! TGCTGTTTTGGGGATTGATT+TGG - chr4.4:38973311-38973330 MS.gene28311:intron 40.0%
AACAGAGAAATCCCACAAGG+TGG + chr4.4:38974096-38974115 None:intergenic 45.0%
ACAACTGAGAGTGAAGGAGA+GGG + chr4.4:38974150-38974169 None:intergenic 45.0%
ACAGAGACAACTGAGAGTGA+AGG + chr4.4:38974156-38974175 None:intergenic 45.0%
ATAGGGAAGCCGATTAATCG+AGG + chr4.4:38972862-38972881 None:intergenic 45.0%
CCTGGATTTCGCATGCAAAA+AGG - chr4.4:38973441-38973460 MS.gene28311:intron 45.0%
CCTTATAAACCTAGGCCGTA+CGG - chr4.4:38973407-38973426 MS.gene28311:intron 45.0%
CTTCCTTCTACAGATGCTTG+GGG - chr4.4:38974783-38974802 MS.gene28311:intron 45.0%
GAACAAGACCACGAATACCA+AGG + chr4.4:38973985-38974004 None:intergenic 45.0%
GACCGGATCCTTATAAACCT+AGG - chr4.4:38973399-38973418 MS.gene28311:intron 45.0%
GACTGGTGTTCAAACACAGA+AGG - chr4.4:38973371-38973390 MS.gene28311:intron 45.0%
GACTTCCTTCTACAGATGCT+TGG - chr4.4:38974781-38974800 MS.gene28311:intron 45.0%
GATAGTCTCTCTACTCCCAA+TGG - chr4.4:38972470-38972489 MS.gene28311:intron 45.0%
GCAAATGTGAAGGTCACTTG+TGG + chr4.4:38973913-38973932 None:intergenic 45.0%
GCAGTCCTCAATTTACAAGC+CGG - chr4.4:38972988-38973007 MS.gene28311:intron 45.0%
GGATTTCGCATGCAAAAAGG+AGG - chr4.4:38973444-38973463 MS.gene28311:intron 45.0%
GGCCTAGGTTTATAAGGATC+CGG + chr4.4:38973404-38973423 None:intergenic 45.0%
TCAAGAGTTGCTTGAGCACA+AGG - chr4.4:38973744-38973763 MS.gene28311:intron 45.0%
TCTCCTGTATGTGACTGTCA+TGG - chr4.4:38974886-38974905 MS.gene28311:intron 45.0%
TCTGCCACTACTATACCATG+CGG - chr4.4:38973124-38973143 MS.gene28311:intron 45.0%
TGCTCCAGGGAAATCATCAA+AGG - chr4.4:38974430-38974449 MS.gene28311:intron 45.0%
TTGTGCTCAAGCAACTCTTG+AGG + chr4.4:38973745-38973764 None:intergenic 45.0%
TTTCTCTGTCTCTGTCTCCA+TGG - chr4.4:38972360-38972379 MS.gene28311:CDS 45.0%
! AAGGGTTTTTAAATGGGGGG+AGG + chr4.4:38973720-38973739 None:intergenic 45.0%
! CAGTTAAGAGTGGACTTGAC+TGG - chr4.4:38973354-38973373 MS.gene28311:intron 45.0%
! CCTTTTTGCATGCGAAATCC+AGG + chr4.4:38973444-38973463 None:intergenic 45.0%
!! GGTATTCGTGGTCTTGTTCT+TGG - chr4.4:38973986-38974005 MS.gene28311:intron 45.0%
!! GGTTTTGTAGAGGTTGCGTT+AGG - chr4.4:38973009-38973028 MS.gene28311:intron 45.0%
!! TAAAAGAAAAATAAAAATAT+TGG + chr4.4:38974466-38974485 None:intergenic 5.0%
CCGTACGGCCTAGGTTTATA+AGG + chr4.4:38973410-38973429 None:intergenic 50.0%
CTCTGTCTCCATGGAGAAGA+AGG - chr4.4:38972369-38972388 MS.gene28311:CDS 50.0%
CTTCCCCAAGCATCTGTAGA+AGG + chr4.4:38974789-38974808 None:intergenic 50.0%
GAAGGAGAGGGTCAACTTGA+CGG + chr4.4:38974138-38974157 None:intergenic 50.0%
GACAACTGAGAGTGAAGGAG+AGG + chr4.4:38974151-38974170 None:intergenic 50.0%
GGGCATAAGCAGCCAACAAA+TGG + chr4.4:38973848-38973867 None:intergenic 50.0%
GGTATAGTAGTGGCAGAGTC+AGG + chr4.4:38973121-38973140 None:intergenic 50.0%
! CGCACCTTTGATGATTTCCC+TGG + chr4.4:38974437-38974456 None:intergenic 50.0%
!! TCCTGGTTCTGCAACTACAG+TGG + chr4.4:38972698-38972717 None:intergenic 50.0%
CAGGCCGCATGGTATAGTAG+TGG + chr4.4:38973131-38973150 None:intergenic 55.0%
GCCACTGTAGTTGCAGAACC+AGG - chr4.4:38972694-38972713 MS.gene28311:intron 55.0%
GCGATGTGTGAACTGCTCCA+GGG - chr4.4:38974417-38974436 MS.gene28311:intron 55.0%
GGAGCAGTTCACACATCGCA+AGG + chr4.4:38974416-38974435 None:intergenic 55.0%
GGTCAACTTGACGGAGGTTG+AGG + chr4.4:38974129-38974148 None:intergenic 55.0%
TACTGAAGCTTCAGGCCGCA+TGG + chr4.4:38973142-38973161 None:intergenic 55.0%
TGCATGCGAAATCCAGGCAC+TGG + chr4.4:38973438-38973457 None:intergenic 55.0%
TGCGATGTGTGAACTGCTCC+AGG - chr4.4:38974416-38974435 MS.gene28311:intron 55.0%
TTGACGGAGGTTGAGGACCA+AGG + chr4.4:38974122-38974141 None:intergenic 55.0%
!! ATGCGAAATCCAGGCACTGG+TGG + chr4.4:38973435-38973454 None:intergenic 55.0%
!! TGCGAAATCCAGGCACTGGT+GGG + chr4.4:38973434-38973453 None:intergenic 55.0%
GGAGAGGGTCAACTTGACGG+AGG + chr4.4:38974135-38974154 None:intergenic 60.0%
!! GCGAAATCCAGGCACTGGTG+GGG + chr4.4:38973433-38973452 None:intergenic 60.0%
!! CAGGCACTGGTGGGGCCGTA+CGG + chr4.4:38973425-38973444 None:intergenic 70.0%
CGTACGGCCCCACCAGTGCC+TGG - chr4.4:38973423-38973442 MS.gene28311:intron 75.0%
CTGGTGGGGCCGTACGGCCT+AGG + chr4.4:38973419-38973438 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 38972263 38975086 38972263 ID=MS.gene28311
chr4.4 mRNA 38972263 38975086 38972263 ID=MS.gene28311.t1;Parent=MS.gene28311
chr4.4 exon 38974959 38975086 38974959 ID=MS.gene28311.t1.exon1;Parent=MS.gene28311.t1
chr4.4 CDS 38974959 38975086 38974959 ID=cds.MS.gene28311.t1;Parent=MS.gene28311.t1
chr4.4 exon 38974810 38974883 38974810 ID=MS.gene28311.t1.exon2;Parent=MS.gene28311.t1
chr4.4 CDS 38974810 38974883 38974810 ID=cds.MS.gene28311.t1;Parent=MS.gene28311.t1
chr4.4 exon 38974614 38974708 38974614 ID=MS.gene28311.t1.exon3;Parent=MS.gene28311.t1
chr4.4 CDS 38974614 38974708 38974614 ID=cds.MS.gene28311.t1;Parent=MS.gene28311.t1
chr4.4 exon 38973884 38973992 38973884 ID=MS.gene28311.t1.exon4;Parent=MS.gene28311.t1
chr4.4 CDS 38973884 38973992 38973884 ID=cds.MS.gene28311.t1;Parent=MS.gene28311.t1
chr4.4 exon 38972898 38972911 38972898 ID=MS.gene28311.t1.exon5;Parent=MS.gene28311.t1
chr4.4 CDS 38972898 38972911 38972898 ID=cds.MS.gene28311.t1;Parent=MS.gene28311.t1
chr4.4 exon 38972476 38972577 38972476 ID=MS.gene28311.t1.exon6;Parent=MS.gene28311.t1
chr4.4 CDS 38972476 38972577 38972476 ID=cds.MS.gene28311.t1;Parent=MS.gene28311.t1
chr4.4 exon 38972263 38972394 38972263 ID=MS.gene28311.t1.exon7;Parent=MS.gene28311.t1
chr4.4 CDS 38972263 38972394 38972263 ID=cds.MS.gene28311.t1;Parent=MS.gene28311.t1
Gene Sequence

>MS.gene28311

ATGTCGATGATTGCTGTCTCCAACTCCAATTCCATTAAACTAGGAGTGAGAGTTGCTTCATACACTCCTCCAAATGCTAAATCAAGAGCACTCAATTTTTCTCTGTCTCTGTCTCCATGGAGAAGAAGGTACCAAATTGCTTCAAATATATATTTTACTATTCCTTGCTTGATGTAGTTTGAAAATCATATTTCACTTTGCAGCTTAGATAGTCTCTCTACTCCCAATGGAACAACTCTCAGACATCTCAATACTCCTATTTCAGCTGTTAATTCAGGTTATTATTATTTTTATGGCTCATTTTCCTTTATATGTGATTAAAGGATAGACTAGTATCCCTTGCTTCTGAACTAATCTTATGTTATTCTTGCTTTGTAGGTTTAGAAGCATCAATTACAGATTCCAATGATATTTCAGCCTTCTTAACTGATGCCACTGTAGTTGCAGAACCAGGAGATGATAATAAGATACAAGTGAGTGAGCACTGAGCATGCATAAAAAACTTATTACAATGTAGAAGTGTGTGTCTCTATCTATATCAATAACTTTCATTAACTCAGCTCAGTTGAAGCTTTTCATAGTCTTCAATTCTTCATCCTCGATTAATCGGCTTCCCTATCTGATTTAATTTGTTTCTAACATAATTATGCACTCCACTATGTTACTTTTGTTAAGAGTCTTACATCGGATGAGATAAGGCTTGAAAATGTGTTTATAAGTGAGAGGCAGTCCTCAATTTACAAGCCGGTTTTGTAGAGGTTGCGTTAGGCCCAAACCATATTGTGAGAACCTTTGTTTACCTGAGCAGATTAGAATTGAAGCTAATGTTGCTATCAACATATGTTTAATTGTTATCCTGACTCTGCCACTACTATACCATGCGGCCTGAAGCTTCAGTATAAACAAATTGTGGCTAGATGTATTGCTATAAAATGCTTTGTTATTTTCCCTTTAGCCTCCTCCTTTTATCATGTAAAATATTTTTGTGAAGAATGTTTCTATAAATCACAGCTTCATGTTAATTTTATGTTTTCATTTTCTAGTAACCTGCTGTTTTGGGGATTGATTTGGTTATCTTGTGGTTTAAATGGCAGTTAAGAGTGGACTTGACTGGTGTTCAAACACAGAAGGTATTTGACCGGATCCTTATAAACCTAGGCCGTACGGCCCCACCAGTGCCTGGATTTCGCATGCAAAAAGGAGGTAAAAAGTTTCTTTATTAATATATCTAACATTTGTCACATTTTTCACTTTCATACCCTATTATGATGATTCATACTTTGCAATACATGCTATGAACACACATGAGTTTGACATATTGTGATAGGGACTTGGGTATTATGGGGTGCCCAAGTCCCACATCAAGTAATGTGAGATGCTTTGTGATAGCTAGGTTTTGAAAGCGAGTTTCACAAGTGTTTTGATACTTCAAGTGCTTCGATACTTATCATATTCCTCCCCCCATTTAAAAACCCTTATCCTCAAGAGTTGCTTGAGCACAAGGAATTACCAACCACATTCTAGACACACTAAAAACCGATGACCATTTTTCTGCGAAATAAGAGCAATTACTTTATAAGCTCCATTTGTTGGCTGCTTATGCCCTTGTTACAAAACATCAATGCCTGCAACTTTTCAATTTTTTGGCCACAAGTGACCTTCACATTTGCATCATGTATTTTCTTGATCATCAAAGGCTTAGTGAAAATAGAAGTGTTTCCTTGGTATTCGTGGTCTTGTTCTTGGTTTTAGGCTTAGCTTGTGTTCTTTACAAAGGAAAGACCTTGGATGCCCATTTTATCACTTCCTGTATTTGGTTAGTGAAAAAATCCACCTTGTGGGATTTCTCTGTTAAACCTTGGTCCTCAACCTCCGTCAAGTTGACCCTCTCCTTCACTCTCAGTTGTCTCTGTTACCAGATATGCAGTCCAATTATGAGAAAACCAGTAAATGAAAGGAAACGAAACTTTCGTTTTATAATTGACAAATGCTAATTACATCGAGAGGCCCTGCCTATATAAACTTGTTATTTGTCTCTTGTTGGTGATATTATCTTACATGTGATTCATTCTCCTGTTCATCATAGTTCAGAATTTCATCAGCATAAGAAATTCAAGTCCCTGAATTTTAACTTAATTACTTTGTACATGCCTTGCGATGTGTGAACTGCTCCAGGGAAATCATCAAAGGTGCGCAATGTCCAATATTTTTATTTTTCTTTTATTATATTTGATGAATTATTGTTTAGTATTTTTTTGATCCATAAATTATTCATTCATTCTTCTGTAATGTTGTTTGTAACATCAATATCGTTAAAATGTTGTCGTTAAGTCATCCCTGAGATTAAGTTTTATCTCAAAAAAATGCTTTTGACAAAAACAACATTATTTGTGCACTGATGAATGCAACAGAACACCCATGAATCATGATAATATATCTGTTTTGTTATTTTTTGAAATAATATGTTTGATTCTTCGTTGAAGTTGACTTTGTTAGGAAATCGATGCAGATTCCGAAAGACTTCCTTCTACAGATGCTTGGGGAAGAACGTGTCACTAAGTTTGCAATACAAGAAATACTCAATTGTACCATGGCTGATTATACAAAAAAGGCAAGTGATTTTTCTCCTGTATGTGACTGTCATGGATATATATGTATAAACTTATTTTCACATTTGATTTCCCGATTCCAGGAAAACTTAGATGCAAAGGACAAGAAGGTTAGCACTATTCAAACGATACAAGAACTCAAAAAATCATTCACAGCAGGAAAAGAATTTGGATTCAATGTTCTAATTGAGCCTAAAAACTCCGAAGGTGAATAA

Protein sequence

>MS.gene28311.t1

MSMIAVSNSNSIKLGVRVASYTPPNAKSRALNFSLSLSPWRRSLDSLSTPNGTTLRHLNTPISAVNSGLEASITDSNDISAFLTDATVVAEPGDDNKIQLRVDLTGVQTQKVFDRILINLGRTAPPVPGFRMQKGGKSSKIPKDFLLQMLGEERVTKFAIQEILNCTMADYTKKENLDAKDKKVSTIQTIQELKKSFTAGKEFGFNVLIEPKNSEGE