AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene062501


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062501.t1 MTR_1g047210 99.134 462 4 0 1 462 1 462 0.0 934
MS.gene062501.t1 MTR_4g022430 77.551 441 92 2 1 441 1 434 0.0 695
MS.gene062501.t1 MTR_4g134090 34.559 408 228 10 52 438 7 396 1.49e-59 201
MS.gene062501.t1 MTR_4g134090 34.559 408 228 10 52 438 14 403 2.31e-59 200
MS.gene062501.t1 MTR_5g098310 33.687 377 227 7 52 414 16 383 4.35e-54 186
MS.gene062501.t1 MTR_0449s0040 31.778 343 211 7 52 380 16 349 1.89e-39 145
MS.gene062501.t1 MTR_4g134090 30.534 262 145 9 52 292 7 252 3.94e-20 90.9
MS.gene062501.t1 MTR_0837s0020 35.135 111 72 0 60 170 808 918 2.56e-12 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene062501.t1 AT2G33150 84.449 463 70 2 1 462 1 462 0.0 794
MS.gene062501.t1 AT1G04710 81.596 451 74 2 1 451 1 442 0.0 745
MS.gene062501.t1 AT5G48880 71.806 454 120 3 1 450 1 450 0.0 670
MS.gene062501.t1 AT5G48880 71.806 454 120 3 1 450 1 450 0.0 670
MS.gene062501.t1 AT5G48880 71.806 454 120 3 1 450 1 450 0.0 670
MS.gene062501.t1 AT5G48880 75.862 406 96 1 47 450 2 407 0.0 646
MS.gene062501.t1 AT5G48230 36.220 381 212 9 52 414 7 374 3.73e-60 202
MS.gene062501.t1 AT5G48230 36.220 381 212 9 52 414 12 379 4.33e-60 202
MS.gene062501.t1 AT5G47720 34.595 370 216 9 84 438 45 403 1.70e-58 198
MS.gene062501.t1 AT5G47720 34.595 370 216 9 84 438 45 403 1.70e-58 198
MS.gene062501.t1 AT5G47720 34.595 370 216 9 84 438 45 403 2.27e-58 197
MS.gene062501.t1 AT5G47720 34.595 370 216 9 84 438 45 403 2.27e-58 197
MS.gene062501.t1 AT5G47720 34.595 370 216 9 84 438 52 410 3.19e-58 197

Find 116 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTGGAAGAAGGCAGTTT+TGG 0.234038 1.2:+30033625 None:intergenic
TACCCATTCTTGGTGTATTC+AGG 0.235250 1.2:-30032974 MS.gene062501:intron
GTAAATACTTTGGTGGAAAC+TGG 0.327252 1.2:+30033371 None:intergenic
ATTGTTGTCGGTTCTGTATT+GGG 0.330737 1.2:-30034196 MS.gene062501:CDS
GAAAAGGTTGTCCCCTTTGC+GGG 0.341498 1.2:+30030541 None:intergenic
GCGGCTGCTGCTACTGCTGC+TGG 0.346344 1.2:-30033416 MS.gene062501:CDS
CCGATGTAGCTGCTGCTATA+AGG 0.350310 1.2:-30033975 MS.gene062501:CDS
CGTGGCAAGGACTGCCGATA+TGG 0.352522 1.2:-30030743 MS.gene062501:CDS
TTCGCAGGCTTCAGCATGTT+TGG 0.353543 1.2:-30034655 MS.gene062501:intron
AATGGCAATTGGGCATCCTT+TGG 0.353600 1.2:-30031246 MS.gene062501:CDS
TATCACAGGACAGCTGCATT+TGG 0.360508 1.2:-30034615 MS.gene062501:CDS
GTTAATAGACAATGTTCATC+TGG 0.362171 1.2:-30034012 MS.gene062501:CDS
ATCACAGGACAGCTGCATTT+GGG 0.364031 1.2:-30034614 MS.gene062501:CDS
AACGGAGGTGCAATGGCAAT+TGG 0.374137 1.2:-30031257 MS.gene062501:CDS
GAAAATGTTGCCAATCGCTT+TGG 0.377320 1.2:-30033591 MS.gene062501:CDS
CAAAAGGGGCTACCCATTCT+TGG 0.386260 1.2:-30032984 MS.gene062501:CDS
TATTGTTGTCGGTTCTGTAT+TGG 0.386914 1.2:-30034197 MS.gene062501:CDS
GCAACTGGAATTGCAGCAGC+TGG 0.394353 1.2:+30031485 None:intergenic
TTTAGGTATTGGTGCCGGTT+TGG 0.402358 1.2:-30033853 MS.gene062501:intron
CTAATTCTAGCGAGCATCCT+TGG 0.404438 1.2:+30030514 None:intergenic
CCTGCAGCCTTCACAGCAAC+TGG 0.406034 1.2:+30031470 None:intergenic
GGGCATCCTTTGGGAGCAAC+AGG 0.407923 1.2:-30031236 MS.gene062501:intron
ATGGCAATTGGGCATCCTTT+GGG 0.407928 1.2:-30031245 MS.gene062501:CDS
ATAAATAAAACCTTCAAAAC+AGG 0.414760 1.2:+30034353 None:intergenic
TTGTGAGCAGGTACTGGAAT+GGG 0.418268 1.2:-30030614 MS.gene062501:intron
GTCACCATTTCCGTTGATGA+TGG 0.423720 1.2:-30033241 MS.gene062501:CDS
AAGAAGTATTGCAATGCAAA+AGG 0.426968 1.2:-30033000 MS.gene062501:CDS
GTCGGTTCTGTATTGGGAGC+TGG 0.433413 1.2:-30034190 MS.gene062501:CDS
CCAATCGCTTTGGAGTTTCA+AGG 0.435048 1.2:-30033581 MS.gene062501:CDS
AATTCCATCATCAACGGAAA+TGG 0.437634 1.2:+30033237 None:intergenic
CCTTGAAACTCCAAAGCGAT+TGG 0.443317 1.2:+30033581 None:intergenic
CCAGTTGCTGTGAAGGCTGC+AGG 0.443727 1.2:-30031470 MS.gene062501:CDS
CAAAACTGCCTTCTTCCAAT+GGG 0.447664 1.2:-30033624 MS.gene062501:CDS
TGGTGTTGATCCTGCCATCA+TGG 0.449169 1.2:-30031516 MS.gene062501:CDS
CGATGTAGCTGCTGCTATAA+GGG 0.459665 1.2:-30033974 MS.gene062501:CDS
AGCTTTGCAATGCCCGCAAA+GGG 0.463134 1.2:-30030553 MS.gene062501:CDS
ACACAGCTTTAAGCTTTCCT+AGG 0.466091 1.2:+30033191 None:intergenic
CAGGCTTCAGCATGTTTGGC+GGG 0.467392 1.2:-30034651 MS.gene062501:CDS
ACAGGAGCTAGGATATCATC+AGG 0.471003 1.2:+30034371 None:intergenic
AGATGTGGAAGATGAATCAT+TGG 0.474876 1.2:+30035427 None:intergenic
CCAAAACTGCCTTCTTCCAA+TGG 0.475884 1.2:-30033625 MS.gene062501:CDS
ATCCAGAGACTGTGCCGGTT+AGG 0.477289 1.2:-30034038 MS.gene062501:intron
TGCCATTGGATTAGTTGTCA+TGG 0.478121 1.2:+30033827 None:intergenic
AACTTGAACCCAAGTGAAGT+TGG 0.479113 1.2:-30034223 MS.gene062501:CDS
TGCAATTCCAGTTGCTGTGA+AGG 0.480592 1.2:-30031477 MS.gene062501:CDS
TGTCTATTAACTGTCCTAAC+CGG 0.481291 1.2:+30034024 None:intergenic
ACAATATCTCCAACTTCACT+TGG 0.482345 1.2:+30034214 None:intergenic
AGTTGTCATGGATTCCAAAC+CGG 0.484869 1.2:+30033839 None:intergenic
TCACAAAAGATCAATGTTAA+CGG 0.488907 1.2:-30031275 MS.gene062501:CDS
GAAGTTGGAGATATTGTTGT+CGG 0.492011 1.2:-30034208 MS.gene062501:CDS
AGAAGTATTGCAATGCAAAA+GGG 0.494786 1.2:-30032999 MS.gene062501:CDS
ACGGAGGTGCAATGGCAATT+GGG 0.495713 1.2:-30031256 MS.gene062501:CDS
ACTGATCCATCCCATGCCAT+TGG 0.498873 1.2:+30033813 None:intergenic
GTAGCTGCTGCTATAAGGGC+TGG 0.500674 1.2:-30033970 MS.gene062501:CDS
GGGCCAACACCCATGATGGC+AGG 0.504707 1.2:+30031506 None:intergenic
GTACCTGAATACACCAAGAA+TGG 0.506042 1.2:+30032971 None:intergenic
ACATGGATATTACTCCATAT+CGG 0.516143 1.2:+30030729 None:intergenic
AGGTCAGATAATGATGCGTT+GGG 0.517353 1.2:+30033211 None:intergenic
TACCTGAATACACCAAGAAT+GGG 0.522492 1.2:+30032972 None:intergenic
GCAGGCTTCAGCATGTTTGG+CGG 0.525564 1.2:-30034652 MS.gene062501:intron
TGTAGGAGTTTCGTCGCAGT+TGG 0.529855 1.2:-30031536 MS.gene062501:intron
GATCCTGCCATCATGGGTGT+TGG 0.532689 1.2:-30031509 MS.gene062501:CDS
AATCAAGTCCTAGCTTGTTA+CGG 0.534024 1.2:+30031297 None:intergenic
AACTTCACTTGGGTTCAAGT+TGG 0.534134 1.2:+30034225 None:intergenic
GAGCATCCTTGGATAAGAAA+AGG 0.536509 1.2:+30030525 None:intergenic
AGCTGGGCCAACACCCATGA+TGG 0.538149 1.2:+30031502 None:intergenic
CAACTGGAATTGCAGCAGCT+GGG 0.538167 1.2:+30031486 None:intergenic
TGAAATGAAGCGACGTGGCA+AGG 0.538544 1.2:-30030756 MS.gene062501:CDS
AGAAAAGGTTGTCCCCTTTG+CGG 0.541326 1.2:+30030540 None:intergenic
GAAACAAACATTGAGAGATG+TGG 0.541636 1.2:+30035412 None:intergenic
TAGGTCAGATAATGATGCGT+TGG 0.542770 1.2:+30033210 None:intergenic
AAAGACGGAACCACCACTGC+TGG 0.543818 1.2:-30033163 MS.gene062501:intron
GGTGTTGATCCTGCCATCAT+GGG 0.545097 1.2:-30031515 MS.gene062501:CDS
CAAAATGGTAAATACTTTGG+TGG 0.548554 1.2:+30033364 None:intergenic
GTATATTGCCGTAACAAGCT+AGG 0.554751 1.2:-30031305 MS.gene062501:CDS
CTCCAGCACCATCACTCACC+TGG 0.557295 1.2:+30033039 None:intergenic
AAACCTTCAAAACAGGAGCT+AGG 0.557984 1.2:+30034360 None:intergenic
GTTGATAGGTTGAGTCTCAC+AGG 0.558743 1.2:-30033442 MS.gene062501:intron
CAATGTTAACGGAGGTGCAA+TGG 0.560069 1.2:-30031264 MS.gene062501:CDS
AGGTAATCCCCATTGGAAGA+AGG 0.564039 1.2:+30033616 None:intergenic
TGATCTTATACCAGCAGTGG+TGG 0.567622 1.2:+30033153 None:intergenic
AGCCAGGTGAGTGATGGTGC+TGG 0.568071 1.2:-30033041 MS.gene062501:CDS
GACAACTAATCCAATGGCAT+GGG 0.568175 1.2:-30033823 MS.gene062501:CDS
ATTGTGAGCAGGTACTGGAA+TGG 0.569253 1.2:-30030615 MS.gene062501:intron
TGACAACTAATCCAATGGCA+TGG 0.569744 1.2:-30033824 MS.gene062501:CDS
CCTTATAGCAGCAGCTACAT+CGG 0.570871 1.2:+30033975 None:intergenic
TTATGATCTTATACCAGCAG+TGG 0.573440 1.2:+30033150 None:intergenic
GAGCTTTGCAATGCCCGCAA+AGG 0.573513 1.2:-30030554 MS.gene062501:CDS
CATGTGCTTGCAGTGCATAT+CGG 0.575220 1.2:-30034439 MS.gene062501:intron
AAGAGCTAGTGAATGTCGTA+TGG 0.581957 1.2:-30034161 MS.gene062501:CDS
ATCCATGACAACTAATCCAA+TGG 0.583716 1.2:-30033829 MS.gene062501:CDS
GAGACAGTGCTGCTTATCAC+AGG 0.584230 1.2:-30034629 MS.gene062501:CDS
TGTGAGCAGGTACTGGAATG+GGG 0.588396 1.2:-30030613 MS.gene062501:intron
TCACAGGACAGCTGCATTTG+GGG 0.588788 1.2:-30034613 MS.gene062501:CDS
TTAATAGACAATGTTCATCT+GGG 0.594394 1.2:-30034011 MS.gene062501:CDS
GGAGTAATATCCATGTGCAT+TGG 0.596790 1.2:-30030722 MS.gene062501:intron
TATATACCTGTTGCTCCCAA+AGG 0.599601 1.2:+30031230 None:intergenic
GAAGTATTGCAATGCAAAAG+GGG 0.600485 1.2:-30032998 MS.gene062501:CDS
AATTCTAGCCAGGTGAGTGA+TGG 0.600677 1.2:-30033047 MS.gene062501:CDS
CAATATCTCCAACTTCACTT+GGG 0.604564 1.2:+30034215 None:intergenic
ACTAATCCAATGGCATGGGA+TGG 0.605555 1.2:-30033819 MS.gene062501:CDS
AAAGCTGTGTTCAAGAAAGA+CGG 0.620023 1.2:-30033178 MS.gene062501:CDS
CTTTGCAAAGCTAAACGTGG+TGG 0.621994 1.2:-30034410 MS.gene062501:CDS
AGCTGCATTTGGGGACGATG+TGG 0.625487 1.2:-30034604 MS.gene062501:CDS
TTTCCATCCAGAGACTGTGC+CGG 0.626929 1.2:-30034043 MS.gene062501:intron
GGGTCGAATTCCATCATCAA+CGG 0.642050 1.2:+30033231 None:intergenic
GTGAGCAGGTACTGGAATGG+GGG 0.647925 1.2:-30030612 MS.gene062501:intron
AGTGAGTGTACCAATGCACA+TGG 0.653800 1.2:+30030712 None:intergenic
AAAACTGCCTTCTTCCAATG+GGG 0.657668 1.2:-30033623 MS.gene062501:CDS
GGTTGAGTCTCACAGGCGAG+CGG 0.670559 1.2:-30033435 MS.gene062501:CDS
CAAAAGATCAATGTTAACGG+AGG 0.676322 1.2:-30031272 MS.gene062501:CDS
GCTTTGCAATGCCCGCAAAG+GGG 0.689691 1.2:-30030552 MS.gene062501:CDS
CAGGAGCTAGGATATCATCA+GGG 0.699408 1.2:+30034372 None:intergenic
TTGCATGAAATGAAGCGACG+TGG 0.723164 1.2:-30030761 MS.gene062501:CDS
AACGCATCATTATCTGACCT+AGG 0.725641 1.2:-30033208 MS.gene062501:CDS
GCTCTTTGCAAAGCTAAACG+TGG 0.726080 1.2:-30034413 MS.gene062501:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAACAATATTAACTATA+TGG + chr1.2:30035372-30035391 None:intergenic 10.0%
!! TAATAATTAGAAATAATTTG+AGG + chr1.2:30032902-30032921 None:intergenic 10.0%
!!! ATTTCAATTTGTTTTATTTT+TGG - chr1.2:30035197-30035216 MS.gene062501:intron 10.0%
!!! TTTCAATTTGTTTTATTTTT+GGG - chr1.2:30035198-30035217 MS.gene062501:intron 10.0%
!! AAATGTATTATAAAATTGTG+TGG - chr1.2:30033447-30033466 MS.gene062501:intron 15.0%
!! GAATATAGTTTAATATTCAT+TGG - chr1.2:30031133-30031152 MS.gene062501:intron 15.0%
!! GTATTGAGAATTATTTAAAA+AGG - chr1.2:30033568-30033587 MS.gene062501:CDS 15.0%
!! TATTGCTTAATAATCAATTA+AGG + chr1.2:30031216-30031235 None:intergenic 15.0%
!!! ATGAAATATGTGATAATTTT+TGG - chr1.2:30033174-30033193 MS.gene062501:CDS 15.0%
!!! CACAATTTTATAATACATTT+TGG + chr1.2:30033447-30033466 None:intergenic 15.0%
!!! TTTATAAACTGATTTCAAAT+TGG - chr1.2:30033067-30033086 MS.gene062501:intron 15.0%
!!! TTTATAATACATTTTGGATT+GGG + chr1.2:30033441-30033460 None:intergenic 15.0%
!!! TTTTATAATACATTTTGGAT+TGG + chr1.2:30033442-30033461 None:intergenic 15.0%
!! AGAGAAGTAAGAAATAAAAT+CGG + chr1.2:30033354-30033373 None:intergenic 20.0%
!! ATAAATAAAACCTTCAAAAC+AGG + chr1.2:30031661-30031680 None:intergenic 20.0%
!! CCTAAACAAAAAATAGTTAA+AGG + chr1.2:30032144-30032163 None:intergenic 20.0%
!! GAAAAATACATGAATCTATT+AGG + chr1.2:30035061-30035080 None:intergenic 20.0%
!! GAACTAAAATATCATAAACT+AGG - chr1.2:30035139-30035158 MS.gene062501:intron 20.0%
!! GAAGTTAATACATAAACAAA+TGG + chr1.2:30034648-30034667 None:intergenic 20.0%
!! TAAAAAGGTAAAAAAGAAAG+AGG - chr1.2:30033583-30033602 MS.gene062501:CDS 20.0%
!! TATGGAAAGAAAAAAAACTT+TGG + chr1.2:30034053-30034072 None:intergenic 20.0%
!! TCACAAAAGAAACAATTAAA+AGG + chr1.2:30030676-30030695 None:intergenic 20.0%
!!! ACTATTTTTTGTTTAGGTAT+TGG - chr1.2:30032147-30032166 MS.gene062501:intron 20.0%
!!! CCTTTAACTATTTTTTGTTT+AGG - chr1.2:30032141-30032160 MS.gene062501:intron 20.0%
!!! GAATATGAACATATACTTTT+TGG + chr1.2:30030817-30030836 None:intergenic 20.0%
!!! TAGATGAATTTTTAGTTGTT+TGG - chr1.2:30033663-30033682 MS.gene062501:intron 20.0%
!!! TATTAGGTTATTTTAGCTAT+AGG + chr1.2:30035045-30035064 None:intergenic 20.0%
!!! TATTTGATTTGATGTAAATG+TGG + chr1.2:30034214-30034233 None:intergenic 20.0%
!!! TCTTCTCAAAATCAATTTTA+TGG + chr1.2:30034071-30034090 None:intergenic 20.0%
!!! TGATTTTATATCTGTGTTTT+AGG - chr1.2:30032940-30032959 MS.gene062501:intron 20.0%
!!! TTACATATTGTTTGAAACTT+TGG + chr1.2:30034295-30034314 None:intergenic 20.0%
!!! TTCTGTAAAAGTATATGAAT+TGG - chr1.2:30031101-30031120 MS.gene062501:intron 20.0%
! AAACACACATAAAATCCAAA+AGG + chr1.2:30030710-30030729 None:intergenic 25.0%
! AACACACATAAAATCCAAAA+GGG + chr1.2:30030709-30030728 None:intergenic 25.0%
! ACTAGGTAACAAATAATAAC+TGG - chr1.2:30035156-30035175 MS.gene062501:intron 25.0%
! AGTAATGGTAGGAAATAAAA+TGG + chr1.2:30034339-30034358 None:intergenic 25.0%
! AGTATATGTTCATATTCATG+TGG - chr1.2:30030820-30030839 MS.gene062501:intron 25.0%
! ATATCATTATGTTAAAGAGC+AGG + chr1.2:30033133-30033152 None:intergenic 25.0%
! ATCTGACAAACATTATTTGT+TGG - chr1.2:30034446-30034465 MS.gene062501:intron 25.0%
! CACTTAAATTCAACATAAGA+AGG + chr1.2:30033306-30033325 None:intergenic 25.0%
! CTTAAAATAATACCTCTAGA+GGG - chr1.2:30032306-30032325 MS.gene062501:intron 25.0%
! GTTTGTTCTATAAATAAGGA+AGG - chr1.2:30033094-30033113 MS.gene062501:intron 25.0%
! TAAAATGGAGAAAAGAAAAG+AGG + chr1.2:30034324-30034343 None:intergenic 25.0%
! TAAACAAATGGTGAGAAAAA+AGG + chr1.2:30034636-30034655 None:intergenic 25.0%
! TACATCAAATCAAATAAGCA+AGG - chr1.2:30034218-30034237 MS.gene062501:CDS 25.0%
! TATCATTATGTTAAAGAGCA+GGG + chr1.2:30033132-30033151 None:intergenic 25.0%
! TCACAAAAGATCAATGTTAA+CGG - chr1.2:30034736-30034755 MS.gene062501:intron 25.0%
! TCTAAATTAGAACCTAATAC+CGG + chr1.2:30032703-30032722 None:intergenic 25.0%
! TCTTAAAATAATACCTCTAG+AGG - chr1.2:30032305-30032324 MS.gene062501:intron 25.0%
! TGGTAACTTTCAAAACAAAA+AGG + chr1.2:30034896-30034915 None:intergenic 25.0%
! TGTTTGGATATTCATATTGA+TGG - chr1.2:30030786-30030805 MS.gene062501:CDS 25.0%
! TTAATAGACAATGTTCATCT+GGG - chr1.2:30032000-30032019 MS.gene062501:intron 25.0%
! TTATCAGCAAGATTTAGTTA+TGG + chr1.2:30032545-30032564 None:intergenic 25.0%
! TTGAAATGCATATATGTATG+TGG + chr1.2:30035184-30035203 None:intergenic 25.0%
! TTGCTGATAATATTGTTGAT+AGG - chr1.2:30032555-30032574 MS.gene062501:intron 25.0%
! TTTATGTCTGATGAATTTGA+TGG - chr1.2:30030922-30030941 MS.gene062501:intron 25.0%
!! GTATATTGTATTTTCCTTTC+CGG - chr1.2:30032681-30032700 MS.gene062501:intron 25.0%
!! TCAATGATTTGCATATATTC+AGG - chr1.2:30034666-30034685 MS.gene062501:intron 25.0%
!! TCATTGGAATATGAATTTTC+AGG - chr1.2:30031149-30031168 MS.gene062501:intron 25.0%
!! TTACCATTTTGCACTATAAA+GGG - chr1.2:30032659-30032678 MS.gene062501:intron 25.0%
!! TTATTTGTTGGTTGTAATGT+AGG - chr1.2:30034458-30034477 MS.gene062501:intron 25.0%
!! TTTACCATTTTGCACTATAA+AGG - chr1.2:30032658-30032677 MS.gene062501:intron 25.0%
!! TTTCTTCATCTTTTTCTGTT+TGG - chr1.2:30030622-30030641 MS.gene062501:intron 25.0%
!!! AAGTACACATTCATGTTTTT+TGG + chr1.2:30033255-30033274 None:intergenic 25.0%
!!! ACTTTGACATAAACTTGTTA+TGG - chr1.2:30031316-30031335 MS.gene062501:CDS 25.0%
!!! CAATGAGATGATTTTTAGAA+TGG + chr1.2:30034396-30034415 None:intergenic 25.0%
!!! CATATATGATTTGAGTTTTG+AGG - chr1.2:30030983-30031002 MS.gene062501:intron 25.0%
!!! CGATCTTTTTGAAATAAATG+AGG - chr1.2:30034582-30034601 MS.gene062501:intron 25.0%
!!! GATTTTATTTCTTACTTCTC+TGG - chr1.2:30033353-30033372 MS.gene062501:intron 25.0%
!!! GTGTTGGTTTGATAAAAATA+AGG - chr1.2:30030956-30030975 MS.gene062501:intron 25.0%
!!! TATTGTACTTTCTCTTGTTT+TGG - chr1.2:30033229-30033248 MS.gene062501:CDS 25.0%
!!! TTGTTTTATTTTTGGGATGT+AGG - chr1.2:30035205-30035224 MS.gene062501:intron 25.0%
AAATCATCTCATTGCAGAAT+TGG - chr1.2:30034402-30034421 MS.gene062501:CDS 30.0%
AACAAGAATTGTTTGAATGC+AGG + chr1.2:30034363-30034382 None:intergenic 30.0%
AACGTGAACTAAAGTAGTAA+AGG + chr1.2:30031695-30031714 None:intergenic 30.0%
ACAAATTATCTAGACATACC+AGG + chr1.2:30031896-30031915 None:intergenic 30.0%
ACAAGAATTGTTTGAATGCA+GGG + chr1.2:30034362-30034381 None:intergenic 30.0%
ACATGGATATTACTCCATAT+CGG + chr1.2:30035285-30035304 None:intergenic 30.0%
ATACCCTTTATAGTGCAAAA+TGG + chr1.2:30032665-30032684 None:intergenic 30.0%
ATATATATCGTCTCGATCAT+TGG - chr1.2:30030884-30030903 MS.gene062501:intron 30.0%
ATGAAATGTGAGAAATCAGA+AGG - chr1.2:30035116-30035135 MS.gene062501:intron 30.0%
CAAAATGGTAAATACTTTGG+TGG + chr1.2:30032650-30032669 None:intergenic 30.0%
CATAAGAAGGAAACAGATAT+AGG + chr1.2:30033293-30033312 None:intergenic 30.0%
CCAGATTAATTAATTCGTCT+AGG - chr1.2:30032266-30032285 MS.gene062501:intron 30.0%
CCTAGACGAATTAATTAATC+TGG + chr1.2:30032269-30032288 None:intergenic 30.0%
CGAATTAATTAATCTGGCAA+AGG + chr1.2:30032263-30032282 None:intergenic 30.0%
GAAAAAAGGATGGTAAGATA+AGG + chr1.2:30034622-30034641 None:intergenic 30.0%
GAAAAACGGAAAATTACTCT+AGG + chr1.2:30032228-30032247 None:intergenic 30.0%
GACTTATATTTGTATTTCGC+AGG - chr1.2:30031341-30031360 MS.gene062501:intron 30.0%
GGAGATAAAGTTAGGAAAAA+CGG + chr1.2:30032242-30032261 None:intergenic 30.0%
GTGCAAAATGGTAAATACTT+TGG + chr1.2:30032653-30032672 None:intergenic 30.0%
GTTAATAGACAATGTTCATC+TGG - chr1.2:30031999-30032018 MS.gene062501:intron 30.0%
GTTTATTGTAAATTGTGAGC+AGG - chr1.2:30035385-30035404 MS.gene062501:intron 30.0%
TATCAAATCCTGTGAGAAAA+GGG + chr1.2:30033506-30033525 None:intergenic 30.0%
TATCACATTAACACTTCGTT+TGG + chr1.2:30033872-30033891 None:intergenic 30.0%
TATTCATGTGGATTCTATTG+TGG - chr1.2:30030832-30030851 MS.gene062501:intron 30.0%
TCATTGGATGAAAAAGAAGA+AGG + chr1.2:30030571-30030590 None:intergenic 30.0%
TGAAATGTGAGAAATCAGAA+GGG - chr1.2:30035117-30035136 MS.gene062501:intron 30.0%
TTGAAACTTTGGACTTTAAG+TGG + chr1.2:30034284-30034303 None:intergenic 30.0%
TTGGACAAGTATCAAATCAA+TGG - chr1.2:30033193-30033212 MS.gene062501:CDS 30.0%
! CGCAGTTTGTTCTATAAATA+AGG - chr1.2:30033090-30033109 MS.gene062501:intron 30.0%
! GGATTTTATGACATTGGTAA+AGG - chr1.2:30032062-30032081 MS.gene062501:intron 30.0%
! TTATCCTTGTCTTTTTGAAC+TGG - chr1.2:30031019-30031038 MS.gene062501:intron 30.0%
!! AAATACAAGTTGTTGACTTG+TGG + chr1.2:30034807-30034826 None:intergenic 30.0%
!! AAGAAGTATTGCAATGCAAA+AGG - chr1.2:30033011-30033030 MS.gene062501:CDS 30.0%
!! AGAAGTATTGCAATGCAAAA+GGG - chr1.2:30033012-30033031 MS.gene062501:CDS 30.0%
!! ATGTGATGTCTTTTTCACTT+TGG + chr1.2:30034171-30034190 None:intergenic 30.0%
!! GAATATGAATTTTCAGGAGA+GGG - chr1.2:30031155-30031174 MS.gene062501:intron 30.0%
!! GAATTTGATGGTGAATTGAT+TGG - chr1.2:30030934-30030953 MS.gene062501:intron 30.0%
!! GTTTTGATCTTGAATCTGTT+TGG - chr1.2:30030770-30030789 MS.gene062501:CDS 30.0%
!! TGTGTTTCTGTTTTCTTGAT+TGG - chr1.2:30030723-30030742 MS.gene062501:CDS 30.0%
!! TTGACATAAACTTGTTATGG+TGG - chr1.2:30031319-30031338 MS.gene062501:CDS 30.0%
!!! TCGTCTAGGTTTTTTACTTT+TGG - chr1.2:30032280-30032299 MS.gene062501:intron 30.0%
!!! TGAATTTTTAGTTGTTTGGC+AGG - chr1.2:30033667-30033686 MS.gene062501:intron 30.0%
!!! TTCTTGATTGGTTTTTAGCT+TGG - chr1.2:30030735-30030754 MS.gene062501:CDS 30.0%
AAAGCTGTGTTCAAGAAAGA+CGG - chr1.2:30032833-30032852 MS.gene062501:intron 35.0%
AAATAAAATCGGCACTTAGC+TGG + chr1.2:30033343-30033362 None:intergenic 35.0%
AACATAACTGTAATGTGCCT+TGG - chr1.2:30035082-30035101 MS.gene062501:intron 35.0%
AAGTATGTGGAACAGAAAAG+TGG + chr1.2:30033768-30033787 None:intergenic 35.0%
AATTCCATCATCAACGGAAA+TGG + chr1.2:30032777-30032796 None:intergenic 35.0%
ACAATATCTCCAACTTCACT+TGG + chr1.2:30031800-30031819 None:intergenic 35.0%
ACCACAATCAATACAATGCA+AGG + chr1.2:30033530-30033549 None:intergenic 35.0%
AGATGTGGAAGATGAATCAT+TGG + chr1.2:30030587-30030606 None:intergenic 35.0%
AGGAAATTATGTGTAGCAGA+AGG + chr1.2:30031196-30031215 None:intergenic 35.0%
AGTATGTGGAACAGAAAAGT+GGG + chr1.2:30033767-30033786 None:intergenic 35.0%
ATCCATGACAACTAATCCAA+TGG - chr1.2:30032182-30032201 MS.gene062501:intron 35.0%
ATTAGAACCTAATACCGGAA+AGG + chr1.2:30032698-30032717 None:intergenic 35.0%
ATTTCTTACTTTGTCGTGAC+AGG - chr1.2:30032344-30032363 MS.gene062501:intron 35.0%
CAAAAGATCAATGTTAACGG+AGG - chr1.2:30034739-30034758 MS.gene062501:intron 35.0%
CAAATCAAATAAGCAAGGAG+AGG - chr1.2:30034223-30034242 MS.gene062501:CDS 35.0%
CAAATGGTGAGAAAAAAGGA+TGG + chr1.2:30034632-30034651 None:intergenic 35.0%
CAATATCTCCAACTTCACTT+GGG + chr1.2:30031799-30031818 None:intergenic 35.0%
CACAGCTAAACAAGAGAAAA+TGG + chr1.2:30033983-30034002 None:intergenic 35.0%
CCACAATCAATACAATGCAA+GGG + chr1.2:30033529-30033548 None:intergenic 35.0%
CTAAATCTGATCGATGATTC+TGG - chr1.2:30031920-30031939 MS.gene062501:intron 35.0%
GAAACAAACATTGAGAGATG+TGG + chr1.2:30030602-30030621 None:intergenic 35.0%
GAAGTTGGAGATATTGTTGT+CGG - chr1.2:30031803-30031822 MS.gene062501:intron 35.0%
GACTTCTTGTCAATAGATTG+TGG - chr1.2:30032721-30032740 MS.gene062501:intron 35.0%
GGAAATTATGTGTAGCAGAA+GGG + chr1.2:30031195-30031214 None:intergenic 35.0%
GTAAATACTTTGGTGGAAAC+TGG + chr1.2:30032643-30032662 None:intergenic 35.0%
GTATCAAATCCTGTGAGAAA+AGG + chr1.2:30033507-30033526 None:intergenic 35.0%
TAACACTTCGTTTGGTATAC+TGG + chr1.2:30033864-30033883 None:intergenic 35.0%
TACCTGAATACACCAAGAAT+GGG + chr1.2:30033042-30033061 None:intergenic 35.0%
TACTTTCCGGTTGTTACAAA+TGG - chr1.2:30033783-30033802 MS.gene062501:intron 35.0%
TGATGTTGAGGTTTCATTGT+AGG - chr1.2:30031748-30031767 MS.gene062501:intron 35.0%
TGCAACATATTGCAGAAAAC+AGG + chr1.2:30033480-30033499 None:intergenic 35.0%
TGTCTATTAACTGTCCTAAC+CGG + chr1.2:30031990-30032009 None:intergenic 35.0%
TTACAGAACCAACACAAATC+AGG + chr1.2:30031089-30031108 None:intergenic 35.0%
TTAGCTGTGAAGAGGAAAAA+AGG - chr1.2:30033994-30034013 MS.gene062501:CDS 35.0%
TTATGATCTTATACCAGCAG+TGG + chr1.2:30032864-30032883 None:intergenic 35.0%
TTCGTTTGGTATACTGGAAA+AGG + chr1.2:30033858-30033877 None:intergenic 35.0%
TTTACATGAACGTGATGTTG+AGG - chr1.2:30031736-30031755 MS.gene062501:intron 35.0%
TTTCTGTTCCACATACTTTC+CGG - chr1.2:30033770-30033789 MS.gene062501:intron 35.0%
! AATCATGACCTGATTTGTGT+TGG - chr1.2:30031078-30031097 MS.gene062501:intron 35.0%
! ATAAAAGGTTTTCTCCCTGA+TGG + chr1.2:30033730-30033749 None:intergenic 35.0%
! GTATTTTCCTTTCCGGTATT+AGG - chr1.2:30032688-30032707 MS.gene062501:intron 35.0%
! TATATGTGTATTGGTGTGTG+TGG - chr1.2:30035337-30035356 MS.gene062501:intron 35.0%
! TCAGGGAGAAAACCTTTTAT+TGG - chr1.2:30033730-30033749 MS.gene062501:intron 35.0%
!! AATCAAGTCCTAGCTTGTTA+CGG + chr1.2:30034717-30034736 None:intergenic 35.0%
!! ATTGTTGTCGGTTCTGTATT+GGG - chr1.2:30031815-30031834 MS.gene062501:intron 35.0%
!! GAAGTATTGCAATGCAAAAG+GGG - chr1.2:30033013-30033032 MS.gene062501:CDS 35.0%
!! GGAATATGAATTTTCAGGAG+AGG - chr1.2:30031154-30031173 MS.gene062501:intron 35.0%
!! GTGATATTTGATGACCCTTT+TGG - chr1.2:30030692-30030711 MS.gene062501:intron 35.0%
!! TATTGTTGTCGGTTCTGTAT+TGG - chr1.2:30031814-30031833 MS.gene062501:intron 35.0%
!! TGTTTTAGGTAATTCTAGCC+AGG - chr1.2:30032954-30032973 MS.gene062501:intron 35.0%
!! TTCCTGTTTTTCATCCATCA+GGG - chr1.2:30033713-30033732 MS.gene062501:intron 35.0%
!! TTGCATTGTATTGATTGTGG+TGG - chr1.2:30033529-30033548 MS.gene062501:intron 35.0%
!!! TTTTGTTTAGGTATTGGTGC+CGG - chr1.2:30032153-30032172 MS.gene062501:intron 35.0%
AAAACTGCCTTCTTCCAATG+GGG - chr1.2:30032388-30032407 MS.gene062501:intron 40.0%
AAACCTTCAAAACAGGAGCT+AGG + chr1.2:30031654-30031673 None:intergenic 40.0%
AAAGGTGGAAGGAAAACAGT+TGG - chr1.2:30034012-30034031 MS.gene062501:CDS 40.0%
AACGCATCATTATCTGACCT+AGG - chr1.2:30032803-30032822 MS.gene062501:intron 40.0%
AACTTCACTTGGGTTCAAGT+TGG + chr1.2:30031789-30031808 None:intergenic 40.0%
AACTTGAACCCAAGTGAAGT+TGG - chr1.2:30031788-30031807 MS.gene062501:intron 40.0%
AAGAAAATAGAGCCAGAGAG+AGG + chr1.2:30034260-30034279 None:intergenic 40.0%
AAGAGCTAGTGAATGTCGTA+TGG - chr1.2:30031850-30031869 MS.gene062501:intron 40.0%
AAGGTGGAAGGAAAACAGTT+GGG - chr1.2:30034013-30034032 MS.gene062501:CDS 40.0%
ACTCATCACGCTTATCTTCT+AGG - chr1.2:30033942-30033961 MS.gene062501:intron 40.0%
AGGTCAGATAATGATGCGTT+GGG + chr1.2:30032803-30032822 None:intergenic 40.0%
AGTTGTCATGGATTCCAAAC+CGG + chr1.2:30032175-30032194 None:intergenic 40.0%
CAAAACTGCCTTCTTCCAAT+GGG - chr1.2:30032387-30032406 MS.gene062501:intron 40.0%
CTCTCTGCGTATATGTGTAT+TGG - chr1.2:30035328-30035347 MS.gene062501:intron 40.0%
CTGGCAAAGGAGATAAAGTT+AGG + chr1.2:30032250-30032269 None:intergenic 40.0%
GAAAATGTTGCCAATCGCTT+TGG - chr1.2:30032420-30032439 MS.gene062501:intron 40.0%
GACAACTAATCCAATGGCAT+GGG - chr1.2:30032188-30032207 MS.gene062501:intron 40.0%
GAGCATCCTTGGATAAGAAA+AGG + chr1.2:30035489-30035508 None:intergenic 40.0%
GATCTATCTCGCAAACACAT+TGG + chr1.2:30034916-30034935 None:intergenic 40.0%
GATGGTGAATTGATTGGTGT+TGG - chr1.2:30030940-30030959 MS.gene062501:intron 40.0%
GGAGTAATATCCATGTGCAT+TGG - chr1.2:30035289-30035308 MS.gene062501:intron 40.0%
GGTACCAGTTCAAAAAGACA+AGG + chr1.2:30031026-30031045 None:intergenic 40.0%
GTACCTGAATACACCAAGAA+TGG + chr1.2:30033043-30033062 None:intergenic 40.0%
GTATATTGCCGTAACAAGCT+AGG - chr1.2:30034706-30034725 MS.gene062501:intron 40.0%
GTGTCAAAGCCACCAATAAA+AGG + chr1.2:30033745-30033764 None:intergenic 40.0%
TAGATTGTGGACCCAAAAAC+TGG - chr1.2:30032734-30032753 MS.gene062501:intron 40.0%
TAGGTCAGATAATGATGCGT+TGG + chr1.2:30032804-30032823 None:intergenic 40.0%
TATAAATAAGGAAGGCCCAG+TGG - chr1.2:30033102-30033121 MS.gene062501:intron 40.0%
TATATACCTGTTGCTCCCAA+AGG + chr1.2:30034784-30034803 None:intergenic 40.0%
TGAAGAGGAAAAAAGGTGGA+AGG - chr1.2:30034001-30034020 MS.gene062501:CDS 40.0%
TGACAACTAATCCAATGGCA+TGG - chr1.2:30032187-30032206 MS.gene062501:intron 40.0%
TGACGCAAGTATTCATCTTC+AGG - chr1.2:30033383-30033402 MS.gene062501:CDS 40.0%
TGTAAATTGTGAGCAGGTAC+TGG - chr1.2:30035391-30035410 MS.gene062501:intron 40.0%
TGTCCACCATTTGTAACAAC+CGG + chr1.2:30033792-30033811 None:intergenic 40.0%
TGTTTGAATGCAGGGAGTAA+TGG + chr1.2:30034354-30034373 None:intergenic 40.0%
TTTCATAGCTCCATGTACCA+AGG + chr1.2:30035102-30035121 None:intergenic 40.0%
TTTCCGGTTGTTACAAATGG+TGG - chr1.2:30033786-30033805 MS.gene062501:intron 40.0%
! AGGGCTGGATTTTATGACAT+TGG - chr1.2:30032056-30032075 MS.gene062501:intron 40.0%
! ATTTCTCCTCGCCAGTTTTT+GGG + chr1.2:30032748-30032767 None:intergenic 40.0%
! CACGCTTATCTTCTAGGAAA+TGG - chr1.2:30033948-30033967 MS.gene062501:intron 40.0%
! CATTGGAAGAAGGCAGTTTT+GGG + chr1.2:30032388-30032407 None:intergenic 40.0%
! CGTGGAAAGGAAGTATATGA+AGG + chr1.2:30033835-30033854 None:intergenic 40.0%
! CTGATGGATGAAAAACAGGA+AGG + chr1.2:30033714-30033733 None:intergenic 40.0%
! GGACAACCTTTTCTTATCCA+AGG - chr1.2:30035480-30035499 MS.gene062501:CDS 40.0%
! GGGAGAAAACCTTTTATTGG+TGG - chr1.2:30033733-30033752 MS.gene062501:intron 40.0%
! TACCCATTCTTGGTGTATTC+AGG - chr1.2:30033037-30033056 MS.gene062501:CDS 40.0%
! TCTCTTGTTTAGCTGTGAAG+AGG - chr1.2:30033986-30034005 MS.gene062501:CDS 40.0%
! TGTAACAACCGGAAAGTATG+TGG + chr1.2:30033781-30033800 None:intergenic 40.0%
! TTTTCAGAGGTAATCCCCAT+TGG + chr1.2:30032405-30032424 None:intergenic 40.0%
!! ACACAGCTTTAAGCTTTCCT+AGG + chr1.2:30032823-30032842 None:intergenic 40.0%
!! CCCTTGCATTGTATTGATTG+TGG - chr1.2:30033526-30033545 MS.gene062501:intron 40.0%
!! CTTCCTGTTTTTCATCCATC+AGG - chr1.2:30033712-30033731 MS.gene062501:intron 40.0%
!! TATCCTAGCTCCTGTTTTGA+AGG - chr1.2:30031648-30031667 MS.gene062501:intron 40.0%
!! TGCCATTGGATTAGTTGTCA+TGG + chr1.2:30032187-30032206 None:intergenic 40.0%
!!! GCATTTTATGCTGGTTTTCC+TGG - chr1.2:30031875-30031894 MS.gene062501:intron 40.0%
AATGGCAATTGGGCATCCTT+TGG - chr1.2:30034765-30034784 MS.gene062501:intron 45.0%
AATTCTAGCCAGGTGAGTGA+TGG - chr1.2:30032964-30032983 MS.gene062501:intron 45.0%
ACACGTACCACATGTCATGT+TGG - chr1.2:30034970-30034989 MS.gene062501:intron 45.0%
ACAGGAGCTAGGATATCATC+AGG + chr1.2:30031643-30031662 None:intergenic 45.0%
ACTAATCCAATGGCATGGGA+TGG - chr1.2:30032192-30032211 MS.gene062501:intron 45.0%
AGAAAAGGTTGTCCCCTTTG+CGG + chr1.2:30035474-30035493 None:intergenic 45.0%
AGCAATGATGCTGTAGCTCA+TGG + chr1.2:30034837-30034856 None:intergenic 45.0%
AGGAAAACAGTTGGGATGTG+TGG - chr1.2:30034021-30034040 MS.gene062501:CDS 45.0%
AGGTAATCCCCATTGGAAGA+AGG + chr1.2:30032398-30032417 None:intergenic 45.0%
AGTGAGTGTACCAATGCACA+TGG + chr1.2:30035302-30035321 None:intergenic 45.0%
ATCACAGGACAGCTGCATTT+GGG - chr1.2:30031397-30031416 MS.gene062501:intron 45.0%
ATCACGAGCTTCTACTTTCG+AGG - chr1.2:30031053-30031072 MS.gene062501:intron 45.0%
ATGGCAATTGGGCATCCTTT+GGG - chr1.2:30034766-30034785 MS.gene062501:intron 45.0%
CAGGAGCTAGGATATCATCA+GGG + chr1.2:30031642-30031661 None:intergenic 45.0%
CATGTGCTTGCAGTGCATAT+CGG - chr1.2:30031572-30031591 MS.gene062501:intron 45.0%
CCAAAACTGCCTTCTTCCAA+TGG - chr1.2:30032386-30032405 MS.gene062501:intron 45.0%
CCTTATAGCAGCAGCTACAT+CGG + chr1.2:30032039-30032058 None:intergenic 45.0%
CCTTGAAACTCCAAAGCGAT+TGG + chr1.2:30032433-30032452 None:intergenic 45.0%
CGATGTAGCTGCTGCTATAA+GGG - chr1.2:30032037-30032056 MS.gene062501:intron 45.0%
CTGTAATGTGCCTTGGTACA+TGG - chr1.2:30035089-30035108 MS.gene062501:intron 45.0%
CTTTGCAAAGCTAAACGTGG+TGG - chr1.2:30031601-30031620 MS.gene062501:intron 45.0%
GCTCTTTGCAAAGCTAAACG+TGG - chr1.2:30031598-30031617 MS.gene062501:intron 45.0%
GCTGTGAAGAGGAAAAAAGG+TGG - chr1.2:30033997-30034016 MS.gene062501:CDS 45.0%
GGGTCGAATTCCATCATCAA+CGG + chr1.2:30032783-30032802 None:intergenic 45.0%
TAGAAGCTCGTGATTCTCCT+CGG + chr1.2:30031047-30031066 None:intergenic 45.0%
TATCACAGGACAGCTGCATT+TGG - chr1.2:30031396-30031415 MS.gene062501:intron 45.0%
TGAATGCAGGGAGTAATGGT+AGG + chr1.2:30034350-30034369 None:intergenic 45.0%
TGATCTTATACCAGCAGTGG+TGG + chr1.2:30032861-30032880 None:intergenic 45.0%
TGCAATTCCAGTTGCTGTGA+AGG - chr1.2:30034534-30034553 MS.gene062501:intron 45.0%
TGTCCAGACACACCTTCAAA+CGG - chr1.2:30034993-30035012 MS.gene062501:intron 45.0%
TTGCATGAAATGAAGCGACG+TGG - chr1.2:30035250-30035269 MS.gene062501:intron 45.0%
TTGGTATACTGGAAAAGGCG+TGG + chr1.2:30033853-30033872 None:intergenic 45.0%
! AATACCTCTAGAGGGCTTCA+AGG - chr1.2:30032314-30032333 MS.gene062501:intron 45.0%
! ACACCTTCAAACGGAAGTGT+TGG - chr1.2:30035002-30035021 MS.gene062501:intron 45.0%
! ATACTGGAAAAGGCGTGGAA+AGG + chr1.2:30033848-30033867 None:intergenic 45.0%
! CAATGTTAACGGAGGTGCAA+TGG - chr1.2:30034747-30034766 MS.gene062501:intron 45.0%
! CCATTGGAAGAAGGCAGTTT+TGG + chr1.2:30032389-30032408 None:intergenic 45.0%
! CGTATGGCTGCATTTTATGC+TGG - chr1.2:30031866-30031885 MS.gene062501:intron 45.0%
! CTCCCTGATGGATGAAAAAC+AGG + chr1.2:30033718-30033737 None:intergenic 45.0%
! GAGACGATTTTACCTCTCTC+TGG - chr1.2:30034245-30034264 MS.gene062501:intron 45.0%
! GATTTCTCCTCGCCAGTTTT+TGG + chr1.2:30032749-30032768 None:intergenic 45.0%
! GCGATTGGCAACATTTTCAG+AGG + chr1.2:30032418-30032437 None:intergenic 45.0%
! GTCACCATTTCCGTTGATGA+TGG - chr1.2:30032770-30032789 MS.gene062501:intron 45.0%
! GTCTTTTTGAACTGGTACCG+AGG - chr1.2:30031027-30031046 MS.gene062501:intron 45.0%
! GTTGATAGGTTGAGTCTCAC+AGG - chr1.2:30032569-30032588 MS.gene062501:intron 45.0%
! TTGCAGTACCCTTTTCTCAC+AGG - chr1.2:30033495-30033514 MS.gene062501:intron 45.0%
!! ATTGTGAGCAGGTACTGGAA+TGG - chr1.2:30035396-30035415 MS.gene062501:intron 45.0%
!! CCAATCGCTTTGGAGTTTCA+AGG - chr1.2:30032430-30032449 MS.gene062501:intron 45.0%
!! TTGTGAGCAGGTACTGGAAT+GGG - chr1.2:30035397-30035416 MS.gene062501:intron 45.0%
!! TTTAGGTATTGGTGCCGGTT+TGG - chr1.2:30032158-30032177 MS.gene062501:intron 45.0%
AAAGAGCAGGGCAATCCACT+GGG + chr1.2:30033120-30033139 None:intergenic 50.0%
ACTGATCCATCCCATGCCAT+TGG + chr1.2:30032201-30032220 None:intergenic 50.0%
AGCTTTGCAATGCCCGCAAA+GGG - chr1.2:30035458-30035477 MS.gene062501:CDS 50.0%
CAAAAGGGGCTACCCATTCT+TGG - chr1.2:30033027-30033046 MS.gene062501:CDS 50.0%
CAACTGGAATTGCAGCAGCT+GGG + chr1.2:30034528-30034547 None:intergenic 50.0%
CCGATGTAGCTGCTGCTATA+AGG - chr1.2:30032036-30032055 MS.gene062501:intron 50.0%
CTGGACACCAACATGACATG+TGG + chr1.2:30034980-30034999 None:intergenic 50.0%
CTTATCCAAGGATGCTCGCT+AGG - chr1.2:30035492-30035511 MS.gene062501:CDS 50.0%
GAAAAGGTTGTCCCCTTTGC+GGG + chr1.2:30035473-30035492 None:intergenic 50.0%
GCACCAACACTTCCGTTTGA+AGG + chr1.2:30035008-30035027 None:intergenic 50.0%
GTGTCATGTGTCTGTTGCAC+AGG + chr1.2:30034942-30034961 None:intergenic 50.0%
TAAAGAGCAGGGCAATCCAC+TGG + chr1.2:30033121-30033140 None:intergenic 50.0%
TCACAGGACAGCTGCATTTG+GGG - chr1.2:30031398-30031417 MS.gene062501:intron 50.0%
TGAAATGAAGCGACGTGGCA+AGG - chr1.2:30035255-30035274 MS.gene062501:intron 50.0%
TGTAGGAGTTTCGTCGCAGT+TGG - chr1.2:30034475-30034494 MS.gene062501:intron 50.0%
TTCGCAGGCTTCAGCATGTT+TGG - chr1.2:30031356-30031375 MS.gene062501:intron 50.0%
TTTCCATCCAGAGACTGTGC+CGG - chr1.2:30031968-30031987 MS.gene062501:intron 50.0%
! AACGGAGGTGCAATGGCAAT+TGG - chr1.2:30034754-30034773 MS.gene062501:intron 50.0%
! ACGGAGGTGCAATGGCAATT+GGG - chr1.2:30034755-30034774 MS.gene062501:intron 50.0%
! CTTCCGTTTGAAGGTGTGTC+TGG + chr1.2:30034999-30035018 None:intergenic 50.0%
!! GAGACAGTGCTGCTTATCAC+AGG - chr1.2:30031382-30031401 MS.gene062501:intron 50.0%
!! GCAGCTGCAGTTTTTGAGAG+AGG - chr1.2:30035421-30035440 MS.gene062501:CDS 50.0%
!! GGTGTTGATCCTGCCATCAT+GGG - chr1.2:30034496-30034515 MS.gene062501:intron 50.0%
!! TGGTGTTGATCCTGCCATCA+TGG - chr1.2:30034495-30034514 MS.gene062501:intron 50.0%
!! TGTGAGCAGGTACTGGAATG+GGG - chr1.2:30035398-30035417 MS.gene062501:intron 50.0%
AAAGACGGAACCACCACTGC+TGG - chr1.2:30032848-30032867 MS.gene062501:intron 55.0%
ACGACCTTGAAGCCCTCTAG+AGG + chr1.2:30032321-30032340 None:intergenic 55.0%
AGCTGCATTTGGGGACGATG+TGG - chr1.2:30031407-30031426 MS.gene062501:intron 55.0%
CAGGCTTCAGCATGTTTGGC+GGG - chr1.2:30031360-30031379 MS.gene062501:intron 55.0%
GAGCTTTGCAATGCCCGCAA+AGG - chr1.2:30035457-30035476 MS.gene062501:CDS 55.0%
GCAACTGGAATTGCAGCAGC+TGG + chr1.2:30034529-30034548 None:intergenic 55.0%
GCAGGCTTCAGCATGTTTGG+CGG - chr1.2:30031359-30031378 MS.gene062501:intron 55.0%
GCTTTGCAATGCCCGCAAAG+GGG - chr1.2:30035459-30035478 MS.gene062501:CDS 55.0%
GTAGCTGCTGCTATAAGGGC+TGG - chr1.2:30032041-30032060 MS.gene062501:intron 55.0%
TAACCGGCACAGTCTCTGGA+TGG + chr1.2:30031974-30031993 None:intergenic 55.0%
TGTGGACCCAAAAACTGGCG+AGG - chr1.2:30032739-30032758 MS.gene062501:intron 55.0%
! GTCGGTTCTGTATTGGGAGC+TGG - chr1.2:30031821-30031840 MS.gene062501:intron 55.0%
!! ATCCAGAGACTGTGCCGGTT+AGG - chr1.2:30031973-30031992 MS.gene062501:intron 55.0%
!! GTGAGCAGGTACTGGAATGG+GGG - chr1.2:30035399-30035418 MS.gene062501:intron 55.0%
CCAGTTGCTGTGAAGGCTGC+AGG - chr1.2:30034541-30034560 MS.gene062501:intron 60.0%
CCTGCAGCCTTCACAGCAAC+TGG + chr1.2:30034544-30034563 None:intergenic 60.0%
CGTGGCAAGGACTGCCGATA+TGG - chr1.2:30035268-30035287 MS.gene062501:intron 60.0%
CTCCAGCACCATCACTCACC+TGG + chr1.2:30032975-30032994 None:intergenic 60.0%
GGTTGAGTCTCACAGGCGAG+CGG - chr1.2:30032576-30032595 MS.gene062501:intron 60.0%
GTCCTAACCGGCACAGTCTC+TGG + chr1.2:30031978-30031997 None:intergenic 60.0%
! AGCCAGGTGAGTGATGGTGC+TGG - chr1.2:30032970-30032989 MS.gene062501:intron 60.0%
! GGGCATCCTTTGGGAGCAAC+AGG - chr1.2:30034775-30034794 MS.gene062501:intron 60.0%
GCGGCTGCTGCTACTGCTGC+TGG - chr1.2:30032595-30032614 MS.gene062501:intron 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 30030520 30035513 30030520 ID=MS.gene062501
chr1.2 mRNA 30030520 30035513 30030520 ID=MS.gene062501.t1;Parent=MS.gene062501
chr1.2 exon 30035421 30035513 30035421 ID=MS.gene062501.t1.exon1;Parent=MS.gene062501.t1
chr1.2 CDS 30035421 30035513 30035421 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30034594 30034670 30034594 ID=MS.gene062501.t1.exon2;Parent=MS.gene062501.t1
chr1.2 CDS 30034594 30034670 30034594 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30034364 30034448 30034364 ID=MS.gene062501.t1.exon3;Parent=MS.gene062501.t1
chr1.2 CDS 30034364 30034448 30034364 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30034137 30034263 30034137 ID=MS.gene062501.t1.exon4;Parent=MS.gene062501.t1
chr1.2 CDS 30034137 30034263 30034137 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30033956 30034054 30033956 ID=MS.gene062501.t1.exon5;Parent=MS.gene062501.t1
chr1.2 CDS 30033956 30034054 30033956 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30033803 30033870 30033803 ID=MS.gene062501.t1.exon6;Parent=MS.gene062501.t1
chr1.2 CDS 30033803 30033870 30033803 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30033560 30033667 30033560 ID=MS.gene062501.t1.exon7;Parent=MS.gene062501.t1
chr1.2 CDS 30033560 30033667 30033560 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30033379 30033456 30033379 ID=MS.gene062501.t1.exon8;Parent=MS.gene062501.t1
chr1.2 CDS 30033379 30033456 30033379 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30033164 30033296 30033164 ID=MS.gene062501.t1.exon9;Parent=MS.gene062501.t1
chr1.2 CDS 30033164 30033296 30033164 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30032975 30033071 30032975 ID=MS.gene062501.t1.exon10;Parent=MS.gene062501.t1
chr1.2 CDS 30032975 30033071 30032975 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30031430 30031553 30031430 ID=MS.gene062501.t1.exon11;Parent=MS.gene062501.t1
chr1.2 CDS 30031430 30031553 30031430 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30031237 30031345 30031237 ID=MS.gene062501.t1.exon12;Parent=MS.gene062501.t1
chr1.2 CDS 30031237 30031345 30031237 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30030723 30030806 30030723 ID=MS.gene062501.t1.exon13;Parent=MS.gene062501.t1
chr1.2 CDS 30030723 30030806 30030723 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
chr1.2 exon 30030520 30030626 30030520 ID=MS.gene062501.t1.exon14;Parent=MS.gene062501.t1
chr1.2 CDS 30030520 30030626 30030520 ID=cds.MS.gene062501.t1;Parent=MS.gene062501.t1
Gene Sequence

>MS.gene062501

ATGGACAAAGCGATTAACAGACAAAAAGTTTTGCTTCAACATCTCAATCCTTCTTCTTTTTCATCCAATGATTCATCTTCCACATCTCTCAATGTTTGTTTCTTTCTTCATCTTTTTCTGTTTGGAATTCTCAATTTTGCTTTGATTTTATCGCCTTTTAATTGTTTCTTTTGTGATATTTGATGACCCTTTTGGATTTTATGTGTGTTTCTGTTTTCTTGATTGGTTTTTAGCTTGGAATTTTGTTAAAGTTTTGATCTTGAATCTGTTTGGATATTCATATTGATGGAATCACCAAAAAGTATATGTTCATATTCATGTGGATTCTATTGTGGATAATCACTTTATGAGTTAAAATCACTTAATATATATCGTCTCGATCATTGGAAATAGAAGCTCATGTTTATGTCTGATGAATTTGATGGTGAATTGATTGGTGTTGGTTTGATAAAAATAAGGAAAACATATATGATTTGAGTTTTGAGGCATTCATATTTGTTTATCCTTGTCTTTTTGAACTGGTACCGAGGAGAATCACGAGCTTCTACTTTCGAGGAGAATCATGACCTGATTTGTGTTGGTTCTGTAAAAGTATATGAATTGGTACAAAGTAGAATATAGTTTAATATTCATTGGAATATGAATTTTCAGGAGAGGGAATATTCTCTCTGACCCTTCTGCTACACATAATTTCCTTAATTGATTATTAAGCAATAGTGATAATATTTGTTTATGTGTGTGTATATGTAGATGTATGTATGTACATAAGAGTATTTGTATATGTGTGTATGTTAATACTTTGACATAAACTTGTTATGGTGGACTTATATTTGTATTTCGCAGGCTTCAGCATGTTTGGCGGGAGACAGTGCTGCTTATCACAGGACAGCTGCATTTGGGGACGATGTGGTGATTGTAGCGTGAGTTCAGCTATTACTCATATTGAATTTTTCATATCAAACATGTGTTTTGTTTGATAATTGATATAGAAGATTCGTGAACAAGCTTATTTGAACTTATCTTATGATATAAGTACTTATTGAATTACTTGTCATGTGCTTGCAGTGCATATCGGACTGCTCTTTGCAAAGCTAAACGTGGTGGTTTCAAAGACACTCACCCTGATGATATCCTAGCTCCTGTTTTGAAGGTTTTATTTATAATTTCTGATTCCTTTACTACTTTAGTTCACGTTCTGTTCTATCAATGTGCATCATTTACATGAACGTGATGTTGAGGTTTCATTGTAGGCTGTAATAGAGAAAACCAACTTGAACCCAAGTGAAGTTGGAGATATTGTTGTCGGTTCTGTATTGGGAGCTGGATCTCAAAGAGCTAGTGAATGTCGTATGGCTGCATTTTATGCTGGTTTTCCTGGTATGTCTAGATAATTTGTGCAACTAAATCTGATCGATGATTCTGGTTAGTTGTTTACATGTTTTTTTTTTTTTCCATCCAGAGACTGTGCCGGTTAGGACAGTTAATAGACAATGTTCATCTGGGCTACAAGCTGTTGCCGATGTAGCTGCTGCTATAAGGGCTGGATTTTATGACATTGGTAAAGGATGCATCAAATTGTTTTGTACTTGTGATTGCAAGATCTTTTTTGTATATTGTTTTACCTTTAACTATTTTTTGTTTAGGTATTGGTGCCGGTTTGGAATCCATGACAACTAATCCAATGGCATGGGATGGATCAGTGAATCCTAGAGTAATTTTCCGTTTTTCCTAACTTTATCTCCTTTGCCAGATTAATTAATTCGTCTAGGTTTTTTACTTTTGGTTTCTTAAAATAATACCTCTAGAGGGCTTCAAGGTCGTGATATTTCTTACTTTGTCGTGACAGGTGAAAATGTTTGAACAAGCCCAAAACTGCCTTCTTCCAATGGGGATTACCTCTGAAAATGTTGCCAATCGCTTTGGAGTTTCAAGGAAAGAGCAAGATGAAGCTGCAGTAAGTTGAATATTTTTTTTAATGCAACAATATCATTTCTCTGTTATTTATATTCTAACTTGAACAAACCATAACTAAATCTTGCTGATAATATTGTTGATAGGTTGAGTCTCACAGGCGAGCGGCTGCTGCTACTGCTGCTGGTAGATTTAAAGATGAAATCATTCCAGTTTCCACCAAAGTATTTACCATTTTGCACTATAAAGGGTATATTGTATTTTCCTTTCCGGTATTAGGTTCTAATTTAGACTTCTTGTCAATAGATTGTGGACCCAAAAACTGGCGAGGAGAAATCTGTCACCATTTCCGTTGATGATGGAATTCGACCCAACGCATCATTATCTGACCTAGGAAAGCTTAAAGCTGTGTTCAAGAAAGACGGAACCACCACTGCTGGTATAAGATCATAAAAATGTGATTCATTTCCTCAAATTATTTCTAATTATTATAACATTATTTAATCATTTGATTTTATATCTGTGTTTTAGGTAATTCTAGCCAGGTGAGTGATGGTGCTGGAGCTGTTCTGCTGATGAAAAGAAGTATTGCAATGCAAAAGGGGCTACCCATTCTTGGTGTATTCAGGTACTTCATTTATAAACTGATTTCAAATTGGCGCAGTTTGTTCTATAAATAAGGAAGGCCCAGTGGATTGCCCTGCTCTTTAACATAATGATATAAATTAGAATGTGTATTTAACATGAAATATGTGATAATTTTTGGACAAGTATCAAATCAATGGTGATTTGTCAGAATATTGTACTTTCTCTTGTTTTGGCCAAAAAACATGAATGTGTACTTCATTAAATTAACTTTCCTATATCTGTTTCCTTCTTATGTTGAATTTAAGTGATTGTCAAGTTTAACCAGCTAAGTGCCGATTTTATTTCTTACTTCTCTGGAAACTTCTGACGCAAGTATTCATCTTCAGGACATGATCAATTAAGCACAATAGCACATATAACCCAATCCAAAATGTATTATAAAATTGTGTGGACAAATTCCTGTTTTCTGCAATATGTTGCAGTACCCTTTTCTCACAGGATTTGATACCCTTGCATTGTATTGATTGTGGTGGTGCGTAAAATATATCAGTATTGAGAATTATTTAAAAAGGTAAAAAAGAAAGAGGCTTGAATACTTAAACTGTGTGTGATTTAAGAAATTGAAATGAAAAAATATAGAAAATTAGATGAATTTTTAGTTGTTTGGCAGGATAGATGATATAACATGCACTCCTTCCTGTTTTTCATCCATCAGGGAGAAAACCTTTTATTGGTGGCTTTGACACCCACTTTTCTGTTCCACATACTTTCCGGTTGTTACAAATGGTGGACAAAAAACATCAAGTGTTATTTCCTTCATATACTTCCTTTCCACGCCTTTTCCAGTATACCAAACGAAGTGTTAATGTGATATTGACTAGTGTCTAATTATCTAAAAAGACTACTAACAACTTATCGAACAAACTCATCACGCTTATCTTCTAGGAAATGGAACTTCATACCATTTTCTCTTGTTTAGCTGTGAAGAGGAAAAAAGGTGGAAGGAAAACAGTTGGGATGTGTGGCTCACACCAAAGTTTTTTTTCTTTCCATAAAATTGATTTTGAGAAGACAATTCAACTCTTTCACTTTTACTCATCTATTGATATTTCATCGTGTGTTAAGTTTCACTTGATTTTCTTATTTTTACCAAAGTGAAAAAGACATCACATCAGTTTTTCATTTTTTCTTTCCACATTTACATCAAATCAAATAAGCAAGGAGAGGAGACGATTTTACCTCTCTCTGGCTCTATTTTCTTTCCACTTAAAGTCCAAAGTTTCAAACAATATGTAAAATTCACCTCTTTTCTTTTCTCCATTTTATTTCCTACCATTACTCCCTGCATTCAAACAATTCTTGTTGAATCTTATTCCATTCTAAAAATCATCTCATTGCAGAATTGGTATGAAAAATTCTTAATTATAATCTGACAAACATTATTTGTTGGTTGTAATGTAGGAGTTTCGTCGCAGTTGGTGTTGATCCTGCCATCATGGGTGTTGGCCCAGCTGCTGCAATTCCAGTTGCTGTGAAGGCTGCAGGTCTAGAGCTTGATGACATCGATCTTTTTGAAATAAATGAGGTATTTAAATAATGTCCTTATCTTACCATCCTTTTTTCTCACCATTTGTTTATGTATTAACTTCAATGATTTGCATATATTCAGGCTTTTGCTTCTCAGTTCGTATATTGCCGTAACAAGCTAGGACTTGATTCACAAAAGATCAATGTTAACGGAGGTGCAATGGCAATTGGGCATCCTTTGGGAGCAACAGGTATATACCACAAGTCAACAACTTGTATTTTCACATTCCATGAGCTACAGCATCATTGCTGATTTTTTAAACTTTAAACTTGATATATACTTGTATCCTTTTTGTTTTGAAAGTTACCAATGTGTTTGCGAGATAGATCTCACCTGTGCAACAGACACATGACACTGACATTGACACGTACCACATGTCATGTTGGTGTCCAGACACACCTTCAAACGGAAGTGTTGGTGCTACGTTAGATCTCACCTATAGCTAAAATAACCTAATAGATTCATGTATTTTTCAAACATAACTGTAATGTGCCTTGGTACATGGAGCTATGAAATGTGAGAAATCAGAAGGGAACTAAAATATCATAAACTAGGTAACAAATAATAACTGGTACCACATACATATATGCATTTCAATTTGTTTTATTTTTGGGATGTAGGTGCTCGATGTGTAGCAACTCTATTGCATGAAATGAAGCGACGTGGCAAGGACTGCCGATATGGAGTAATATCCATGTGCATTGGTACACTCACTTTCTCACTCTCTGCGTATATGTGTATTGGTGTGTGTGGTTTTGAACACCATATAGTTAATATTGTTTATTGTAAATTGTGAGCAGGTACTGGAATGGGGGCAGCTGCAGTTTTTGAGAGAGGTGATTCTGTTGATGAGCTTTGCAATGCCCGCAAAGGGGACAACCTTTTCTTATCCAAGGATGCTCGCTAG

Protein sequence

>MS.gene062501.t1

MDKAINRQKVLLQHLNPSSFSSNDSSSTSLNASACLAGDSAAYHRTAAFGDDVVIVAAYRTALCKAKRGGFKDTHPDDILAPVLKAVIEKTNLNPSEVGDIVVGSVLGAGSQRASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVAAAIRAGFYDIGIGAGLESMTTNPMAWDGSVNPRVKMFEQAQNCLLPMGITSENVANRFGVSRKEQDEAAVESHRRAAAATAAGRFKDEIIPVSTKIVDPKTGEEKSVTISVDDGIRPNASLSDLGKLKAVFKKDGTTTAGNSSQVSDGAGAVLLMKRSIAMQKGLPILGVFRSFVAVGVDPAIMGVGPAAAIPVAVKAAGLELDDIDLFEINEAFASQFVYCRNKLGLDSQKINVNGGAMAIGHPLGATGARCVATLLHEMKRRGKDCRYGVISMCIGTGMGAAAVFERGDSVDELCNARKGDNLFLSKDAR