Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073564.t1 | XP_013467304.1 | 100 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 1.40E-43 | 185.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073564.t1 | I3S1M4 | 100.0 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 9.8e-44 | 185.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene073564 | 0.822404 | 2.41E-53 | -1.69E-46 |
| MS.gene049580 | MS.gene073564 | 0.829991 | 3.78E-55 | -1.69E-46 |
| MS.gene049653 | MS.gene073564 | 0.807184 | 5.72E-50 | -1.69E-46 |
| MS.gene049756 | MS.gene073564 | 0.826146 | 3.18E-54 | -1.69E-46 |
| MS.gene050114 | MS.gene073564 | 0.827499 | 1.51E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene073564 | 0.866147 | 3.53E-65 | -1.69E-46 |
| MS.gene050288 | MS.gene073564 | 0.807282 | 5.46E-50 | -1.69E-46 |
| MS.gene050317 | MS.gene073564 | 0.817206 | 3.72E-52 | -1.69E-46 |
| MS.gene050320 | MS.gene073564 | 0.823931 | 1.06E-53 | -1.69E-46 |
| MS.gene050719 | MS.gene073564 | 0.814875 | 1.23E-51 | -1.69E-46 |
| MS.gene050721 | MS.gene073564 | 0.818613 | 1.79E-52 | -1.69E-46 |
| MS.gene050752 | MS.gene073564 | 0.801443 | 8.98E-49 | -1.69E-46 |
| MS.gene050838 | MS.gene073564 | 0.82713 | 1.85E-54 | -1.69E-46 |
| MS.gene051003 | MS.gene073564 | 0.806857 | 6.71E-50 | -1.69E-46 |
| MS.gene051063 | MS.gene073564 | 0.85836 | 8.69E-63 | -1.69E-46 |
| MS.gene051245 | MS.gene073564 | 0.870593 | 1.30E-66 | -1.69E-46 |
| MS.gene051328 | MS.gene073564 | 0.813104 | 3.03E-51 | -1.69E-46 |
| MS.gene051330 | MS.gene073564 | 0.813293 | 2.75E-51 | -1.69E-46 |
| MS.gene051452 | MS.gene073564 | 0.800357 | 1.50E-48 | -1.69E-46 |
| MS.gene051633 | MS.gene073564 | 0.837607 | 4.70E-57 | -1.69E-46 |
| MS.gene051746 | MS.gene073564 | 0.851184 | 1.05E-60 | -1.69E-46 |
| MS.gene051748 | MS.gene073564 | 0.859668 | 3.53E-63 | -1.69E-46 |
| MS.gene051756 | MS.gene073564 | 0.87212 | 4.06E-67 | -1.69E-46 |
| MS.gene051757 | MS.gene073564 | 0.848006 | 8.07E-60 | -1.69E-46 |
| MS.gene051903 | MS.gene073564 | 0.862606 | 4.50E-64 | -1.69E-46 |
| MS.gene051975 | MS.gene073564 | 0.812394 | 4.33E-51 | -1.69E-46 |
| MS.gene052286 | MS.gene073564 | 0.818836 | 1.59E-52 | -1.69E-46 |
| MS.gene052302 | MS.gene073564 | 0.813661 | 2.29E-51 | -1.69E-46 |
| MS.gene052376 | MS.gene073564 | 0.803091 | 4.11E-49 | -1.69E-46 |
| MS.gene052527 | MS.gene073564 | 0.802209 | 6.25E-49 | -1.69E-46 |
| MS.gene052947 | MS.gene073564 | 0.81005 | 1.40E-50 | -1.69E-46 |
| MS.gene053058 | MS.gene073564 | 0.804897 | 1.73E-49 | -1.69E-46 |
| MS.gene053109 | MS.gene073564 | 0.853622 | 2.12E-61 | -1.69E-46 |
| MS.gene053952 | MS.gene073564 | 0.811776 | 5.91E-51 | -1.69E-46 |
| MS.gene055174 | MS.gene073564 | 0.80313 | 4.04E-49 | -1.69E-46 |
| MS.gene055441 | MS.gene073564 | 0.833406 | 5.43E-56 | -1.69E-46 |
| MS.gene055603 | MS.gene073564 | 0.835749 | 1.40E-56 | -1.69E-46 |
| MS.gene056432 | MS.gene073564 | 0.805071 | 1.59E-49 | -1.69E-46 |
| MS.gene056580 | MS.gene073564 | 0.825311 | 5.02E-54 | -1.69E-46 |
| MS.gene056631 | MS.gene073564 | 0.869693 | 2.56E-66 | -1.69E-46 |
| MS.gene056760 | MS.gene073564 | 0.803158 | 3.98E-49 | -1.69E-46 |
| MS.gene056787 | MS.gene073564 | 0.811745 | 6.00E-51 | -1.69E-46 |
| MS.gene056986 | MS.gene073564 | 0.833329 | 5.68E-56 | -1.69E-46 |
| MS.gene057057 | MS.gene073564 | 0.83439 | 3.08E-56 | -1.69E-46 |
| MS.gene057079 | MS.gene073564 | 0.80502 | 1.63E-49 | -1.69E-46 |
| MS.gene057094 | MS.gene073564 | 0.874276 | 7.66E-68 | -1.69E-46 |
| MS.gene057140 | MS.gene073564 | 0.839577 | 1.46E-57 | -1.69E-46 |
| MS.gene057234 | MS.gene073564 | 0.869286 | 3.47E-66 | -1.69E-46 |
| MS.gene057451 | MS.gene073564 | -0.809483 | 1.85E-50 | -1.69E-46 |
| MS.gene057452 | MS.gene073564 | -0.846892 | 1.63E-59 | -1.69E-46 |
| MS.gene057999 | MS.gene073564 | 0.830532 | 2.79E-55 | -1.69E-46 |
| MS.gene058055 | MS.gene073564 | 0.831977 | 1.23E-55 | -1.69E-46 |
| MS.gene058084 | MS.gene073564 | 0.809928 | 1.48E-50 | -1.69E-46 |
| MS.gene058182 | MS.gene073564 | 0.84342 | 1.42E-58 | -1.69E-46 |
| MS.gene058238 | MS.gene073564 | 0.895646 | 7.86E-76 | -1.69E-46 |
| MS.gene058654 | MS.gene073564 | 0.806922 | 6.50E-50 | -1.69E-46 |
| MS.gene058906 | MS.gene073564 | 0.897117 | 1.92E-76 | -1.69E-46 |
| MS.gene059830 | MS.gene073564 | 0.82272 | 2.04E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene073564 | 0.818255 | 2.16E-52 | -1.69E-46 |
| MS.gene06001 | MS.gene073564 | 0.874124 | 8.63E-68 | -1.69E-46 |
| MS.gene060084 | MS.gene073564 | 0.805725 | 1.16E-49 | -1.69E-46 |
| MS.gene06011 | MS.gene073564 | 0.843461 | 1.38E-58 | -1.69E-46 |
| MS.gene060165 | MS.gene073564 | 0.806647 | 7.43E-50 | -1.69E-46 |
| MS.gene060297 | MS.gene073564 | 0.839741 | 1.32E-57 | -1.69E-46 |
| MS.gene060586 | MS.gene073564 | 0.835777 | 1.38E-56 | -1.69E-46 |
| MS.gene060619 | MS.gene073564 | 0.821117 | 4.79E-53 | -1.69E-46 |
| MS.gene060869 | MS.gene073564 | 0.802515 | 5.41E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073564.t1 | MTR_1g048960 | 100.000 | 96 | 0 | 0 | 1 | 96 | 1 | 96 | 1.00e-66 | 195 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene073564.t1 | AT1G72020 | 69.072 | 97 | 29 | 1 | 1 | 96 | 1 | 97 | 2.43e-45 | 141 |
Find 20 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGAGGGATTTGACCTGATT+TGG | 0.301994 | 1.1:+33787351 | None:intergenic |
| CTTGGACAAGATGAAGTATC+AGG | 0.339393 | 1.1:-33785425 | MS.gene073564:CDS |
| GAATCCTCCATCTCCAAATC+AGG | 0.426967 | 1.1:-33787364 | MS.gene073564:intron |
| CAGCAAAAGAAGACAGCATC+TGG | 0.440272 | 1.1:-33785328 | MS.gene073564:CDS |
| GTGTTCACAGCTTTCAGCAT+TGG | 0.501579 | 1.1:-33785382 | MS.gene073564:CDS |
| TTCAACTGGCGTGAAGAGGA+TGG | 0.515922 | 1.1:-33785503 | MS.gene073564:CDS |
| TTGACCTGATTTGGAGATGG+AGG | 0.515967 | 1.1:+33787360 | None:intergenic |
| TGCATATCACATGTACAACT+TGG | 0.529028 | 1.1:-33785443 | MS.gene073564:CDS |
| GATTTGACCTGATTTGGAGA+TGG | 0.541306 | 1.1:+33787357 | None:intergenic |
| TTCATTCAACTGGCGTGAAG+AGG | 0.543901 | 1.1:-33785507 | MS.gene073564:CDS |
| AAGAGGATGGGAGGTGGACA+TGG | 0.543948 | 1.1:-33785490 | MS.gene073564:CDS |
| GGCGTGAAGAGGATGGGAGG+TGG | 0.551979 | 1.1:-33785496 | MS.gene073564:CDS |
| TCAACTGGCGTGAAGAGGAT+GGG | 0.574066 | 1.1:-33785502 | MS.gene073564:CDS |
| GCATATACTCTGGTTCGCTA+TGG | 0.578575 | 1.1:+33785467 | None:intergenic |
| TGGAAAATGACTGCATACAC+AGG | 0.585917 | 1.1:+33785349 | None:intergenic |
| TTGGACAAGATGAAGTATCA+GGG | 0.612137 | 1.1:-33785424 | MS.gene073564:CDS |
| ATAACGATGGCATTGAACAA+CGG | 0.641834 | 1.1:-33787421 | None:intergenic |
| TATGTTGTGACAGTGAGTAG+AGG | 0.651791 | 1.1:-33785532 | MS.gene073564:intron |
| TGATATGCATGCATATACTC+TGG | 0.665333 | 1.1:+33785457 | None:intergenic |
| ACTGGCGTGAAGAGGATGGG+AGG | 0.681452 | 1.1:-33785499 | MS.gene073564:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGATTTGATTTATTAATAAA+TGG | - | chr1.1:33785518-33785537 | MS.gene073564:CDS | 10.0% |
| !! | TGATTTATTAATAAATGGAT+GGG | - | chr1.1:33785523-33785542 | MS.gene073564:intron | 15.0% |
| !! | TTATGGACATAAATAAATTA+AGG | - | chr1.1:33786183-33786202 | MS.gene073564:intron | 15.0% |
| !! | TTGATTTATTAATAAATGGA+TGG | - | chr1.1:33785522-33785541 | MS.gene073564:CDS | 15.0% |
| !! | TTTGAAAGAAAAAAAAATCA+TGG | + | chr1.1:33786703-33786722 | None:intergenic | 15.0% |
| !!! | AGTTTTATTTATGAATTACA+TGG | - | chr1.1:33786279-33786298 | MS.gene073564:intron | 15.0% |
| !!! | GTTTTATTTATGAATTACAT+GGG | - | chr1.1:33786280-33786299 | MS.gene073564:intron | 15.0% |
| !!! | TTATATTAGGGTTTTTATTT+GGG | - | chr1.1:33785481-33785500 | MS.gene073564:CDS | 15.0% |
| !!! | TTTGTTTTTACTTTCAATTT+CGG | - | chr1.1:33785458-33785477 | MS.gene073564:CDS | 15.0% |
| !! | AATAAATTAAGGTAGGAATT+TGG | - | chr1.1:33786194-33786213 | MS.gene073564:intron | 20.0% |
| !! | ATAAATTAAGGTAGGAATTT+GGG | - | chr1.1:33786195-33786214 | MS.gene073564:intron | 20.0% |
| !! | TTATTTGACAATTGAACATA+TGG | - | chr1.1:33786108-33786127 | MS.gene073564:intron | 20.0% |
| !! | TTTCAATTTCGGTTATATTA+GGG | - | chr1.1:33785469-33785488 | MS.gene073564:CDS | 20.0% |
| !!! | ATTGTTGATAAATGTGTATT+TGG | - | chr1.1:33785625-33785644 | MS.gene073564:intron | 20.0% |
| !!! | GTTATATTAGGGTTTTTATT+TGG | - | chr1.1:33785480-33785499 | MS.gene073564:CDS | 20.0% |
| !!! | TATATTAGGGTTTTTATTTG+GGG | - | chr1.1:33785482-33785501 | MS.gene073564:CDS | 20.0% |
| !!! | TTTTAAATTAAGTAGCGATT+AGG | - | chr1.1:33785557-33785576 | MS.gene073564:intron | 20.0% |
| ! | AATTAACGGCTTAGATTAAA+TGG | - | chr1.1:33786369-33786388 | MS.gene073564:intron | 25.0% |
| ! | AATTCTTCCTCAAAAGTAAT+CGG | + | chr1.1:33785433-33785452 | None:intergenic | 25.0% |
| ! | ACATAAGAACAACTATTCAA+TGG | - | chr1.1:33786592-33786611 | MS.gene073564:intron | 25.0% |
| ! | CATAAGAACAACTATTCAAT+GGG | - | chr1.1:33786593-33786612 | MS.gene073564:intron | 25.0% |
| ! | CTTTCAATTTCGGTTATATT+AGG | - | chr1.1:33785468-33785487 | MS.gene073564:CDS | 25.0% |
| ! | GAATGTTATCAATGATACTA+TGG | + | chr1.1:33786249-33786268 | None:intergenic | 25.0% |
| ! | GATTGAGTTTCATTTAGTTA+AGG | - | chr1.1:33786146-33786165 | MS.gene073564:intron | 25.0% |
| ! | GGACATAAATAAATTAAGGT+AGG | - | chr1.1:33786187-33786206 | MS.gene073564:intron | 25.0% |
| !!! | ATATTAGGGTTTTTATTTGG+GGG | - | chr1.1:33785483-33785502 | MS.gene073564:CDS | 25.0% |
| !!! | TCTCTTGTTTTAAGATGATT+AGG | - | chr1.1:33787140-33787159 | MS.gene073564:intron | 25.0% |
| !!! | TTGTGGTTTTGTTTATATTG+TGG | - | chr1.1:33785580-33785599 | MS.gene073564:intron | 25.0% |
| AAATGTTAACAGTCCTTGAT+TGG | - | chr1.1:33786993-33787012 | MS.gene073564:intron | 30.0% | |
| AATGCATAAGTGAATAGCTT+TGG | - | chr1.1:33786002-33786021 | MS.gene073564:intron | 30.0% | |
| AATGTTAACAGTCCTTGATT+GGG | - | chr1.1:33786994-33787013 | MS.gene073564:intron | 30.0% | |
| ACTAAATGAAACTCAATCAC+AGG | + | chr1.1:33786144-33786163 | None:intergenic | 30.0% | |
| AGAAAAAATGCATCAATGGT+GGG | - | chr1.1:33786656-33786675 | MS.gene073564:intron | 30.0% | |
| AGCCATTGGATTAAAATAGA+TGG | + | chr1.1:33787070-33787089 | None:intergenic | 30.0% | |
| AGTGAGAAAAAATGCATCAA+TGG | - | chr1.1:33786652-33786671 | MS.gene073564:intron | 30.0% | |
| ATTTAAATCCAGCGAAAACA+TGG | + | chr1.1:33786058-33786077 | None:intergenic | 30.0% | |
| GCCATTGGATTAACAATTAA+CGG | - | chr1.1:33786355-33786374 | MS.gene073564:intron | 30.0% | |
| GGTTTAATTAGGTCATTATC+TGG | - | chr1.1:33786216-33786235 | MS.gene073564:intron | 30.0% | |
| TCAGAATTAAACTCTTGGAA+GGG | - | chr1.1:33786617-33786636 | MS.gene073564:intron | 30.0% | |
| TCATATCCTCAAGTTATTGA+GGG | - | chr1.1:33785965-33785984 | MS.gene073564:intron | 30.0% | |
| TGATTGGGCATACAAAATAT+TGG | - | chr1.1:33787009-33787028 | MS.gene073564:intron | 30.0% | |
| TTCAGAATTAAACTCTTGGA+AGG | - | chr1.1:33786616-33786635 | MS.gene073564:intron | 30.0% | |
| TTCATATCCTCAAGTTATTG+AGG | - | chr1.1:33785964-33785983 | MS.gene073564:intron | 30.0% | |
| ! | AAAACATTCTATGCTGGTTA+TGG | - | chr1.1:33786898-33786917 | MS.gene073564:intron | 30.0% |
| ! | AAACATTCTATGCTGGTTAT+GGG | - | chr1.1:33786899-33786918 | MS.gene073564:intron | 30.0% |
| ! | AGGCTTCATTGTTGTTATTA+TGG | - | chr1.1:33786166-33786185 | MS.gene073564:intron | 30.0% |
| ! | ATATTTTGTATGCCCAATCA+AGG | + | chr1.1:33787009-33787028 | None:intergenic | 30.0% |
| ! | GTAGGAATTTGGGTTTAATT+AGG | - | chr1.1:33786205-33786224 | MS.gene073564:intron | 30.0% |
| ! | TTTTTACGTGGAAATGAAAG+AGG | + | chr1.1:33787101-33787120 | None:intergenic | 30.0% |
| !! | TAGCTTTGTTTCATTCTGTT+AGG | - | chr1.1:33785927-33785946 | MS.gene073564:intron | 30.0% |
| !! | TTGTACATTTTGATCCAAGA+TGG | + | chr1.1:33786459-33786478 | None:intergenic | 30.0% |
| !! | TTTGATAACGATGTTGTTGA+AGG | - | chr1.1:33785672-33785691 | MS.gene073564:intron | 30.0% |
| !!! | AGCCATCTATTTTAATCCAA+TGG | - | chr1.1:33787065-33787084 | MS.gene073564:intron | 30.0% |
| !!! | TGAGAATGACTTTTTTTACG+TGG | + | chr1.1:33787113-33787132 | None:intergenic | 30.0% |
| AAAAAATGCATCAATGGTGG+GGG | - | chr1.1:33786658-33786677 | MS.gene073564:intron | 35.0% | |
| AAAGCTAACAATATCGCCAT+TGG | - | chr1.1:33786926-33786945 | MS.gene073564:intron | 35.0% | |
| AGACTATTCTAGTGACTGAT+AGG | - | chr1.1:33785722-33785741 | MS.gene073564:intron | 35.0% | |
| CATATCCTCAAGTTATTGAG+GGG | - | chr1.1:33785966-33785985 | MS.gene073564:intron | 35.0% | |
| CCTCTAACTCTCACATAAAA+AGG | + | chr1.1:33786325-33786344 | None:intergenic | 35.0% | |
| CGGATTGAACATGAAAGAAA+AGG | + | chr1.1:33785413-33785432 | None:intergenic | 35.0% | |
| CTAATAACTCCAACCTTAGA+GGG | - | chr1.1:33785821-33785840 | MS.gene073564:intron | 35.0% | |
| CTACTACTAACAAAGATTCG+AGG | + | chr1.1:33785704-33785723 | None:intergenic | 35.0% | |
| GAAAAAATGCATCAATGGTG+GGG | - | chr1.1:33786657-33786676 | MS.gene073564:intron | 35.0% | |
| GAACATGAAAGAAAAGGTGA+GGG | + | chr1.1:33785407-33785426 | None:intergenic | 35.0% | |
| GAGAAAAAATGCATCAATGG+TGG | - | chr1.1:33786655-33786674 | MS.gene073564:intron | 35.0% | |
| GCCGTTAATTGTTAATCCAA+TGG | + | chr1.1:33786359-33786378 | None:intergenic | 35.0% | |
| TGAACATGAAAGAAAAGGTG+AGG | + | chr1.1:33785408-33785427 | None:intergenic | 35.0% | |
| TGATATGCATGCATATACTC+TGG | + | chr1.1:33787285-33787304 | None:intergenic | 35.0% | |
| TGCATATCACATGTACAACT+TGG | - | chr1.1:33787296-33787315 | MS.gene073564:intron | 35.0% | |
| TGGGTTCAGAATTAAACTCT+TGG | - | chr1.1:33786612-33786631 | MS.gene073564:intron | 35.0% | |
| ! | AGTAGAGGTTTTCATTCAAC+TGG | - | chr1.1:33787222-33787241 | MS.gene073564:intron | 35.0% |
| ! | ATTAAGTAGCGATTAGGTTG+TGG | - | chr1.1:33785563-33785582 | MS.gene073564:intron | 35.0% |
| ! | CCTTTTTATGTGAGAGTTAG+AGG | - | chr1.1:33786322-33786341 | MS.gene073564:intron | 35.0% |
| ! | TTGGACAAGATGAAGTATCA+GGG | - | chr1.1:33787315-33787334 | MS.gene073564:intron | 35.0% |
| !! | ATTTTGATCCAAGATGGCAA+TGG | + | chr1.1:33786453-33786472 | None:intergenic | 35.0% |
| !! | GTTCAATCCGATTACTTTTG+AGG | - | chr1.1:33785423-33785442 | MS.gene073564:CDS | 35.0% |
| ATACAAAATATTGGCGCGTG+AGG | - | chr1.1:33787018-33787037 | MS.gene073564:intron | 40.0% | |
| ATCTTCGTTAGTGGCATAGT+TGG | - | chr1.1:33786771-33786790 | MS.gene073564:intron | 40.0% | |
| CCTAATAACTCCAACCTTAG+AGG | - | chr1.1:33785820-33785839 | MS.gene073564:intron | 40.0% | |
| CGAAAACATGGACAGCAATA+AGG | + | chr1.1:33786046-33786065 | None:intergenic | 40.0% | |
| GTGAAGATAAGTGTCATGTG+AGG | + | chr1.1:33786407-33786426 | None:intergenic | 40.0% | |
| TATGTTGTGACAGTGAGTAG+AGG | - | chr1.1:33787207-33787226 | MS.gene073564:intron | 40.0% | |
| TCAATCCCCTCAATAACTTG+AGG | + | chr1.1:33785974-33785993 | None:intergenic | 40.0% | |
| TGATTCATGCGAAACATCCA+AGG | + | chr1.1:33786513-33786532 | None:intergenic | 40.0% | |
| TGGAAAATGACTGCATACAC+AGG | + | chr1.1:33787393-33787412 | None:intergenic | 40.0% | |
| TTCAAAGCAAAAGCCCTCTA+AGG | + | chr1.1:33785837-33785856 | None:intergenic | 40.0% | |
| TTGTTAATCCAATGGCTACC+AGG | + | chr1.1:33786351-33786370 | None:intergenic | 40.0% | |
| ! | AAGAGGTTCTAGTTAGCCAT+TGG | + | chr1.1:33787084-33787103 | None:intergenic | 40.0% |
| ! | CTTGGACAAGATGAAGTATC+AGG | - | chr1.1:33787314-33787333 | MS.gene073564:intron | 40.0% |
| !! | CCTCTAAGGTTGGAGTTATT+AGG | + | chr1.1:33785823-33785842 | None:intergenic | 40.0% |
| !! | GATTTGACCTGATTTGGAGA+TGG | + | chr1.1:33785385-33785404 | None:intergenic | 40.0% |
| !!! | CTTTTGCTTTGAAAACGGTG+TGG | - | chr1.1:33785844-33785863 | MS.gene073564:intron | 40.0% |
| !!! | GAGGGCTTTTGCTTTGAAAA+CGG | - | chr1.1:33785839-33785858 | MS.gene073564:intron | 40.0% |
| AACCAGCATCCCCATTTCAA+TGG | - | chr1.1:33786860-33786879 | MS.gene073564:intron | 45.0% | |
| AAGGAGTCGGACGAATATGA+AGG | - | chr1.1:33785872-33785891 | MS.gene073564:intron | 45.0% | |
| AATGTCTGTGAGATTGCGTG+AGG | + | chr1.1:33786490-33786509 | None:intergenic | 45.0% | |
| AGGAGTCGGACGAATATGAA+GGG | - | chr1.1:33785873-33785892 | MS.gene073564:intron | 45.0% | |
| AGGGGATGAATCAGTTTCAG+GGG | - | chr1.1:33786969-33786988 | MS.gene073564:intron | 45.0% | |
| ATGCTTGGCATCTTCGTTAG+TGG | - | chr1.1:33786762-33786781 | MS.gene073564:intron | 45.0% | |
| CAGCAAAAGAAGACAGCATC+TGG | - | chr1.1:33787411-33787430 | MS.gene073564:CDS | 45.0% | |
| CCATTTCAATGGTGTGGCAT+CGG | - | chr1.1:33786871-33786890 | MS.gene073564:intron | 45.0% | |
| CGATGCCACACCATTGAAAT+GGG | + | chr1.1:33786873-33786892 | None:intergenic | 45.0% | |
| GAATCCTCCATCTCCAAATC+AGG | - | chr1.1:33785375-33785394 | MS.gene073564:CDS | 45.0% | |
| GAGGGGATGAATCAGTTTCA+GGG | - | chr1.1:33786968-33786987 | MS.gene073564:intron | 45.0% | |
| GATGCCACACCATTGAAATG+GGG | + | chr1.1:33786872-33786891 | None:intergenic | 45.0% | |
| GCAATCTCACAGACATTCCT+TGG | - | chr1.1:33786493-33786512 | MS.gene073564:intron | 45.0% | |
| GCTAACAATATCGCCATTGG+TGG | - | chr1.1:33786929-33786948 | MS.gene073564:intron | 45.0% | |
| GGCTGGAAAACATTCTATGC+TGG | - | chr1.1:33786892-33786911 | MS.gene073564:intron | 45.0% | |
| GTGAGGGATTTGACCTGATT+TGG | + | chr1.1:33785391-33785410 | None:intergenic | 45.0% | |
| GTGTTCACAGCTTTCAGCAT+TGG | - | chr1.1:33787357-33787376 | MS.gene073564:intron | 45.0% | |
| GTTAGTGGCATAGTTGGTTG+TGG | - | chr1.1:33786777-33786796 | MS.gene073564:intron | 45.0% | |
| TCTCACGCACATTCACATCT+TGG | + | chr1.1:33786735-33786754 | None:intergenic | 45.0% | |
| TGAAAACGGTGTGGAAGTGA+AGG | - | chr1.1:33785853-33785872 | MS.gene073564:intron | 45.0% | |
| TGTGAGAGTTAGAGGATTCC+TGG | - | chr1.1:33786330-33786349 | MS.gene073564:intron | 45.0% | |
| TTCATTCAACTGGCGTGAAG+AGG | - | chr1.1:33787232-33787251 | MS.gene073564:intron | 45.0% | |
| TTCCTCTCCAACTACTGTTG+AGG | - | chr1.1:33786831-33786850 | MS.gene073564:intron | 45.0% | |
| ! | ACAATATCGCCATTGGTGGT+AGG | - | chr1.1:33786933-33786952 | MS.gene073564:intron | 45.0% |
| ! | ATTGCTGTCCATGTTTTCGC+TGG | - | chr1.1:33786047-33786066 | MS.gene073564:intron | 45.0% |
| ! | CAGATGCTGTCTTCTTTTGC+TGG | + | chr1.1:33787413-33787432 | None:intergenic | 45.0% |
| ! | GCATATACTCTGGTTCGCTA+TGG | + | chr1.1:33787275-33787294 | None:intergenic | 45.0% |
| ! | TTTGGAGCCTCAACAGTAGT+TGG | + | chr1.1:33786841-33786860 | None:intergenic | 45.0% |
| !! | AAGCAAAAGCCCTCTAAGGT+TGG | + | chr1.1:33785833-33785852 | None:intergenic | 45.0% |
| !! | GGATGAGAAGTGTTTGAGCT+TGG | - | chr1.1:33785769-33785788 | MS.gene073564:intron | 45.0% |
| !! | TTGACCTGATTTGGAGATGG+AGG | + | chr1.1:33785382-33785401 | None:intergenic | 45.0% |
| !!! | TGAAATGGGGATGCTGGTTT+TGG | + | chr1.1:33786859-33786878 | None:intergenic | 45.0% |
| !!! | TTTTTTTTTTTTAATCTAAA+TGG | - | chr1.1:33785748-33785767 | MS.gene073564:intron | 5.0% |
| AACCCTGTTGCTCGCTTGAT+GGG | + | chr1.1:33786813-33786832 | None:intergenic | 50.0% | |
| AAGATGGCAATGGCAACAGG+AGG | + | chr1.1:33786443-33786462 | None:intergenic | 50.0% | |
| AGAGGATTCCTGGTAGCCAT+TGG | - | chr1.1:33786340-33786359 | MS.gene073564:intron | 50.0% | |
| AGCCTCAACAGTAGTTGGAG+AGG | + | chr1.1:33786836-33786855 | None:intergenic | 50.0% | |
| AGTGGCATAGTTGGTTGTGG+TGG | - | chr1.1:33786780-33786799 | MS.gene073564:intron | 50.0% | |
| CACCATTGAAATGGGGATGC+TGG | + | chr1.1:33786865-33786884 | None:intergenic | 50.0% | |
| CCGATGCCACACCATTGAAA+TGG | + | chr1.1:33786874-33786893 | None:intergenic | 50.0% | |
| GCATCCCCATTTCAATGGTG+TGG | - | chr1.1:33786865-33786884 | MS.gene073564:intron | 50.0% | |
| GCGTGAGAGAGTTGTATGCT+TGG | - | chr1.1:33786747-33786766 | MS.gene073564:intron | 50.0% | |
| GGAGGGGATGAATCAGTTTC+AGG | - | chr1.1:33786967-33786986 | MS.gene073564:intron | 50.0% | |
| GGAGTCGGACGAATATGAAG+GGG | - | chr1.1:33785874-33785893 | MS.gene073564:intron | 50.0% | |
| TCAACTGGCGTGAAGAGGAT+GGG | - | chr1.1:33787237-33787256 | MS.gene073564:intron | 50.0% | |
| TCCAAGATGGCAATGGCAAC+AGG | + | chr1.1:33786446-33786465 | None:intergenic | 50.0% | |
| TCCTGTTGCCATTGCCATCT+TGG | - | chr1.1:33786442-33786461 | MS.gene073564:intron | 50.0% | |
| TCTGTGAGATTGCGTGAGGA+TGG | + | chr1.1:33786486-33786505 | None:intergenic | 50.0% | |
| TTCAACTGGCGTGAAGAGGA+TGG | - | chr1.1:33787236-33787255 | MS.gene073564:intron | 50.0% | |
| ! | AACTGATTCATCCCCTCCCA+TGG | + | chr1.1:33786965-33786984 | None:intergenic | 50.0% |
| ! | ACTGATTCATCCCCTCCCAT+GGG | + | chr1.1:33786964-33786983 | None:intergenic | 50.0% |
| AAGAGGATGGGAGGTGGACA+TGG | - | chr1.1:33787249-33787268 | MS.gene073564:intron | 55.0% | |
| ACCCTGTTGCTCGCTTGATG+GGG | + | chr1.1:33786812-33786831 | None:intergenic | 55.0% | |
| ATCCCCATCAAGCGAGCAAC+AGG | - | chr1.1:33786807-33786826 | MS.gene073564:intron | 55.0% | |
| CGGTGTGGAAGTGAAGGAGT+CGG | - | chr1.1:33785859-33785878 | MS.gene073564:intron | 55.0% | |
| GAACCCTGTTGCTCGCTTGA+TGG | + | chr1.1:33786814-33786833 | None:intergenic | 55.0% | |
| TCCCCATCAAGCGAGCAACA+GGG | - | chr1.1:33786808-33786827 | MS.gene073564:intron | 55.0% | |
| ! | ATCGCCATTGGTGGTAGGTG+TGG | - | chr1.1:33786938-33786957 | MS.gene073564:intron | 55.0% |
| !! | TTCAATGGTGTGGCATCGGC+TGG | - | chr1.1:33786875-33786894 | MS.gene073564:intron | 55.0% |
| ACTGGCGTGAAGAGGATGGG+AGG | - | chr1.1:33787240-33787259 | MS.gene073564:intron | 60.0% | |
| TGGGCCACACCTACCACCAA+TGG | + | chr1.1:33786945-33786964 | None:intergenic | 60.0% | |
| TGGTGGTAGGTGTGGCCCAT+GGG | - | chr1.1:33786946-33786965 | MS.gene073564:intron | 60.0% | |
| ! | TTGGTGGTAGGTGTGGCCCA+TGG | - | chr1.1:33786945-33786964 | MS.gene073564:intron | 60.0% |
| GGCGTGAAGAGGATGGGAGG+TGG | - | chr1.1:33787243-33787262 | MS.gene073564:intron | 65.0% | |
| GGTAGGTGTGGCCCATGGGA+GGG | - | chr1.1:33786950-33786969 | MS.gene073564:intron | 65.0% | |
| GTAGGTGTGGCCCATGGGAG+GGG | - | chr1.1:33786951-33786970 | MS.gene073564:intron | 65.0% | |
| TGGTAGGTGTGGCCCATGGG+AGG | - | chr1.1:33786949-33786968 | MS.gene073564:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 33785324 | 33787437 | 33785324 | ID=MS.gene073564 |
| chr1.1 | mRNA | 33785324 | 33787437 | 33785324 | ID=MS.gene073564.t1;Parent=MS.gene073564 |
| chr1.1 | exon | 33787365 | 33787437 | 33787365 | ID=MS.gene073564.t1.exon1;Parent=MS.gene073564.t1 |
| chr1.1 | CDS | 33787365 | 33787437 | 33787365 | ID=cds.MS.gene073564.t1;Parent=MS.gene073564.t1 |
| chr1.1 | exon | 33785324 | 33785541 | 33785324 | ID=MS.gene073564.t1.exon2;Parent=MS.gene073564.t1 |
| chr1.1 | CDS | 33785324 | 33785541 | 33785324 | ID=cds.MS.gene073564.t1;Parent=MS.gene073564.t1 |
| Gene Sequence |
| Protein sequence |
