Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074189.t1 | XP_003618769.1 | 94.4 | 445 | 23 | 2 | 1 | 444 | 1 | 444 | 2.30E-205 | 724.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074189.t1 | Q9SS90 | 79.2 | 298 | 62 | 0 | 93 | 390 | 122 | 419 | 8.1e-138 | 491.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074189.t1 | G7KN55 | 94.4 | 445 | 23 | 2 | 1 | 444 | 1 | 444 | 1.7e-205 | 724.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049217 | MS.gene074189 | -0.803653 | 3.15E-49 | -1.69E-46 |
MS.gene049281 | MS.gene074189 | 0.801161 | 1.03E-48 | -1.69E-46 |
MS.gene049285 | MS.gene074189 | -0.82449 | 7.85E-54 | -1.69E-46 |
MS.gene049313 | MS.gene074189 | 0.821662 | 3.58E-53 | -1.69E-46 |
MS.gene049320 | MS.gene074189 | -0.824693 | 7.03E-54 | -1.69E-46 |
MS.gene049609 | MS.gene074189 | -0.809533 | 1.81E-50 | -1.69E-46 |
MS.gene049627 | MS.gene074189 | -0.83259 | 8.67E-56 | -1.69E-46 |
MS.gene05010 | MS.gene074189 | -0.814294 | 1.66E-51 | -1.69E-46 |
MS.gene050129 | MS.gene074189 | 0.805793 | 1.12E-49 | -1.69E-46 |
MS.gene050163 | MS.gene074189 | -0.803258 | 3.80E-49 | -1.69E-46 |
MS.gene050363 | MS.gene074189 | 0.807978 | 3.88E-50 | -1.69E-46 |
MS.gene050381 | MS.gene074189 | 0.803378 | 3.59E-49 | -1.69E-46 |
MS.gene050504 | MS.gene074189 | -0.839807 | 1.27E-57 | -1.69E-46 |
MS.gene050675 | MS.gene074189 | -0.807377 | 5.21E-50 | -1.69E-46 |
MS.gene050699 | MS.gene074189 | -0.833651 | 4.72E-56 | -1.69E-46 |
MS.gene050772 | MS.gene074189 | -0.809156 | 2.17E-50 | -1.69E-46 |
MS.gene050883 | MS.gene074189 | 0.810379 | 1.19E-50 | -1.69E-46 |
MS.gene050926 | MS.gene074189 | 0.802248 | 6.14E-49 | -1.69E-46 |
MS.gene050986 | MS.gene074189 | -0.838583 | 2.64E-57 | -1.69E-46 |
MS.gene051551 | MS.gene074189 | -0.804577 | 2.02E-49 | -1.69E-46 |
MS.gene051694 | MS.gene074189 | -0.815448 | 9.20E-52 | -1.69E-46 |
MS.gene051946 | MS.gene074189 | 0.811263 | 7.64E-51 | -1.69E-46 |
MS.gene052164 | MS.gene074189 | -0.823512 | 1.33E-53 | -1.69E-46 |
MS.gene052482 | MS.gene074189 | -0.803441 | 3.48E-49 | -1.69E-46 |
MS.gene052486 | MS.gene074189 | -0.809465 | 1.87E-50 | -1.69E-46 |
MS.gene052503 | MS.gene074189 | -0.808695 | 2.73E-50 | -1.69E-46 |
MS.gene052615 | MS.gene074189 | -0.814826 | 1.26E-51 | -1.69E-46 |
MS.gene052823 | MS.gene074189 | -0.806393 | 8.41E-50 | -1.69E-46 |
MS.gene052825 | MS.gene074189 | -0.800105 | 1.68E-48 | -1.69E-46 |
MS.gene053203 | MS.gene074189 | -0.820046 | 8.43E-53 | -1.69E-46 |
MS.gene053213 | MS.gene074189 | -0.837582 | 4.78E-57 | -1.69E-46 |
MS.gene053286 | MS.gene074189 | -0.837779 | 4.25E-57 | -1.69E-46 |
MS.gene053436 | MS.gene074189 | -0.811694 | 6.16E-51 | -1.69E-46 |
MS.gene053549 | MS.gene074189 | 0.855618 | 5.59E-62 | -1.69E-46 |
MS.gene053574 | MS.gene074189 | -0.814791 | 1.29E-51 | -1.69E-46 |
MS.gene054435 | MS.gene074189 | 0.804896 | 1.73E-49 | -1.69E-46 |
MS.gene054600 | MS.gene074189 | -0.808589 | 2.88E-50 | -1.69E-46 |
MS.gene054642 | MS.gene074189 | -0.806335 | 8.65E-50 | -1.69E-46 |
MS.gene05470 | MS.gene074189 | -0.814127 | 1.80E-51 | -1.69E-46 |
MS.gene054927 | MS.gene074189 | -0.803949 | 2.73E-49 | -1.69E-46 |
MS.gene054954 | MS.gene074189 | -0.821107 | 4.81E-53 | -1.69E-46 |
MS.gene055362 | MS.gene074189 | -0.845524 | 3.85E-59 | -1.69E-46 |
MS.gene055502 | MS.gene074189 | -0.823781 | 1.15E-53 | -1.69E-46 |
MS.gene055577 | MS.gene074189 | -0.817333 | 3.48E-52 | -1.69E-46 |
MS.gene056083 | MS.gene074189 | -0.811084 | 8.36E-51 | -1.69E-46 |
MS.gene056311 | MS.gene074189 | 0.805187 | 1.51E-49 | -1.69E-46 |
MS.gene056374 | MS.gene074189 | -0.800996 | 1.11E-48 | -1.69E-46 |
MS.gene056408 | MS.gene074189 | 0.842103 | 3.17E-58 | -1.69E-46 |
MS.gene056409 | MS.gene074189 | -0.806955 | 6.40E-50 | -1.69E-46 |
MS.gene056504 | MS.gene074189 | -0.80259 | 5.22E-49 | -1.69E-46 |
MS.gene056510 | MS.gene074189 | -0.805502 | 1.29E-49 | -1.69E-46 |
MS.gene056550 | MS.gene074189 | 0.823269 | 1.52E-53 | -1.69E-46 |
MS.gene056610 | MS.gene074189 | -0.816712 | 4.80E-52 | -1.69E-46 |
MS.gene056657 | MS.gene074189 | -0.821779 | 3.37E-53 | -1.69E-46 |
MS.gene057014 | MS.gene074189 | 0.825365 | 4.88E-54 | -1.69E-46 |
MS.gene058419 | MS.gene074189 | -0.811448 | 6.97E-51 | -1.69E-46 |
MS.gene058544 | MS.gene074189 | -0.809036 | 2.31E-50 | -1.69E-46 |
MS.gene058773 | MS.gene074189 | -0.814628 | 1.40E-51 | -1.69E-46 |
MS.gene059022 | MS.gene074189 | -0.852767 | 3.72E-61 | -1.69E-46 |
MS.gene059023 | MS.gene074189 | -0.813558 | 2.41E-51 | -1.69E-46 |
MS.gene059677 | MS.gene074189 | -0.830408 | 2.99E-55 | -1.69E-46 |
MS.gene059718 | MS.gene074189 | -0.854691 | 1.04E-61 | -1.69E-46 |
MS.gene059865 | MS.gene074189 | -0.809657 | 1.70E-50 | -1.69E-46 |
MS.gene060482 | MS.gene074189 | -0.815653 | 8.28E-52 | -1.69E-46 |
MS.gene060703 | MS.gene074189 | -0.810055 | 1.39E-50 | -1.69E-46 |
MS.gene06077 | MS.gene074189 | -0.851083 | 1.12E-60 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074189.t1 | MTR_6g021730 | 96.854 | 445 | 12 | 2 | 1 | 444 | 1 | 444 | 0.0 | 877 |
MS.gene074189.t1 | MTR_7g033100 | 68.919 | 444 | 97 | 7 | 1 | 444 | 1 | 403 | 0.0 | 570 |
MS.gene074189.t1 | MTR_7g033100 | 69.005 | 442 | 96 | 7 | 1 | 442 | 1 | 401 | 0.0 | 567 |
MS.gene074189.t1 | MTR_3g086520 | 62.556 | 446 | 121 | 10 | 1 | 444 | 24 | 425 | 0.0 | 519 |
MS.gene074189.t1 | MTR_3g086520 | 62.556 | 446 | 121 | 10 | 1 | 444 | 27 | 428 | 0.0 | 519 |
MS.gene074189.t1 | MTR_3g086520 | 62.556 | 446 | 121 | 10 | 1 | 444 | 27 | 428 | 0.0 | 519 |
MS.gene074189.t1 | MTR_8g089670 | 60.841 | 452 | 124 | 9 | 1 | 444 | 27 | 433 | 9.22e-179 | 509 |
MS.gene074189.t1 | MTR_3g075530 | 64.908 | 379 | 106 | 5 | 67 | 444 | 41 | 393 | 6.31e-170 | 485 |
MS.gene074189.t1 | MTR_3g096520 | 64.423 | 312 | 107 | 1 | 98 | 405 | 79 | 390 | 3.92e-145 | 422 |
MS.gene074189.t1 | MTR_3g096520 | 64.423 | 312 | 107 | 1 | 98 | 405 | 96 | 407 | 8.59e-145 | 422 |
MS.gene074189.t1 | MTR_3g096520 | 72.075 | 265 | 74 | 0 | 98 | 362 | 79 | 343 | 7.30e-144 | 419 |
MS.gene074189.t1 | MTR_2g063857 | 65.505 | 287 | 99 | 0 | 93 | 379 | 61 | 347 | 1.68e-139 | 405 |
MS.gene074189.t1 | MTR_2g063857 | 66.548 | 281 | 94 | 0 | 99 | 379 | 67 | 347 | 4.10e-139 | 406 |
MS.gene074189.t1 | MTR_6g092100 | 66.429 | 280 | 92 | 1 | 100 | 379 | 2 | 279 | 1.84e-136 | 395 |
MS.gene074189.t1 | MTR_6g092020 | 65.480 | 281 | 94 | 1 | 99 | 379 | 46 | 323 | 1.28e-134 | 394 |
MS.gene074189.t1 | MTR_2g063843 | 65.125 | 281 | 95 | 1 | 99 | 379 | 59 | 336 | 2.10e-133 | 391 |
MS.gene074189.t1 | MTR_8g447220 | 70.677 | 266 | 78 | 0 | 99 | 364 | 52 | 317 | 1.18e-132 | 386 |
MS.gene074189.t1 | MTR_8g447220 | 68.327 | 281 | 89 | 0 | 100 | 380 | 53 | 333 | 1.54e-132 | 389 |
MS.gene074189.t1 | MTR_2g063907 | 65.125 | 281 | 98 | 0 | 99 | 379 | 53 | 333 | 2.24e-132 | 389 |
MS.gene074189.t1 | MTR_7g081160 | 62.270 | 326 | 93 | 7 | 123 | 441 | 10 | 312 | 2.15e-121 | 365 |
MS.gene074189.t1 | MTR_7g081170 | 79.375 | 160 | 29 | 2 | 159 | 317 | 86 | 242 | 7.30e-88 | 269 |
MS.gene074189.t1 | MTR_2g063877 | 52.252 | 111 | 40 | 3 | 179 | 289 | 3 | 100 | 1.32e-30 | 115 |
MS.gene074189.t1 | MTR_8g096190 | 32.867 | 286 | 147 | 10 | 91 | 356 | 308 | 568 | 5.31e-24 | 105 |
MS.gene074189.t1 | MTR_8g096190 | 33.333 | 261 | 136 | 9 | 91 | 331 | 308 | 550 | 3.18e-22 | 100 |
MS.gene074189.t1 | MTR_8g096190 | 34.783 | 230 | 121 | 8 | 91 | 309 | 308 | 519 | 5.66e-22 | 99.0 |
MS.gene074189.t1 | MTR_1g048160 | 30.000 | 250 | 132 | 7 | 127 | 356 | 334 | 560 | 2.15e-19 | 91.7 |
MS.gene074189.t1 | MTR_7g114100 | 29.600 | 250 | 126 | 10 | 127 | 354 | 172 | 393 | 7.47e-18 | 85.9 |
MS.gene074189.t1 | MTR_7g114130 | 28.112 | 249 | 134 | 8 | 127 | 354 | 338 | 562 | 3.58e-17 | 84.7 |
MS.gene074189.t1 | MTR_7g081180 | 69.355 | 62 | 17 | 1 | 329 | 388 | 1 | 62 | 6.14e-16 | 78.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene074189.t1 | AT5G14420 | 72.414 | 348 | 81 | 3 | 58 | 404 | 67 | 400 | 3.53e-179 | 510 |
MS.gene074189.t1 | AT5G14420 | 72.414 | 348 | 81 | 3 | 58 | 404 | 67 | 400 | 3.53e-179 | 510 |
MS.gene074189.t1 | AT5G14420 | 72.414 | 348 | 81 | 3 | 58 | 404 | 67 | 400 | 3.53e-179 | 510 |
MS.gene074189.t1 | AT5G14420 | 72.414 | 348 | 81 | 3 | 58 | 404 | 67 | 400 | 3.53e-179 | 510 |
MS.gene074189.t1 | AT3G01650 | 74.164 | 329 | 65 | 3 | 56 | 379 | 95 | 408 | 8.66e-177 | 505 |
MS.gene074189.t1 | AT3G01650 | 74.164 | 329 | 65 | 3 | 56 | 379 | 95 | 408 | 8.66e-177 | 505 |
MS.gene074189.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 61 | 379 | 1.29e-169 | 484 |
MS.gene074189.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 61 | 379 | 1.29e-169 | 484 |
MS.gene074189.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 61 | 379 | 1.29e-169 | 484 |
MS.gene074189.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 61 | 379 | 1.29e-169 | 484 |
MS.gene074189.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 81 | 399 | 1.79e-169 | 483 |
MS.gene074189.t1 | AT1G67800 | 70.370 | 324 | 91 | 1 | 95 | 418 | 81 | 399 | 5.49e-169 | 484 |
MS.gene074189.t1 | AT5G63970 | 67.293 | 266 | 87 | 0 | 96 | 361 | 6 | 271 | 5.06e-132 | 386 |
MS.gene074189.t1 | AT5G63970 | 67.293 | 266 | 87 | 0 | 96 | 361 | 6 | 271 | 5.06e-132 | 386 |
MS.gene074189.t1 | AT1G79380 | 62.544 | 283 | 106 | 0 | 92 | 374 | 44 | 326 | 2.18e-131 | 386 |
MS.gene074189.t1 | AT1G24545 | 53.211 | 109 | 13 | 1 | 142 | 250 | 46 | 116 | 5.67e-29 | 112 |
MS.gene074189.t1 | AT5G61910 | 30.627 | 271 | 136 | 11 | 111 | 354 | 1087 | 1332 | 2.16e-21 | 98.6 |
MS.gene074189.t1 | AT5G07300 | 30.216 | 278 | 144 | 11 | 103 | 354 | 314 | 567 | 5.72e-21 | 96.3 |
MS.gene074189.t1 | AT5G61900 | 30.627 | 271 | 136 | 11 | 111 | 354 | 319 | 564 | 7.95e-20 | 92.8 |
MS.gene074189.t1 | AT5G61900 | 30.627 | 271 | 136 | 11 | 111 | 354 | 319 | 564 | 7.95e-20 | 92.8 |
MS.gene074189.t1 | AT1G08860 | 29.299 | 314 | 163 | 12 | 77 | 369 | 302 | 577 | 1.06e-19 | 92.4 |
Find 129 sgRNAs with CRISPR-Local
Find 261 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTGCTTCTGCTTCTTCTTCT+TGG | 0.074743 | 6.1:+5154813 | MS.gene074189:CDS |
CCTCAAATTATTATCCTCTT+TGG | 0.233549 | 6.1:-5154765 | None:intergenic |
GAACAGGCAATATCCATTAT+TGG | 0.248847 | 6.1:+5155637 | MS.gene074189:CDS |
GTTCCTAATATTAAACTTGC+AGG | 0.276620 | 6.1:+5155905 | MS.gene074189:CDS |
GAGTCTTCCAATCTTATTCT+TGG | 0.276878 | 6.1:+5155424 | MS.gene074189:CDS |
TTTGGTACTTCAAAACCTTA+TGG | 0.290222 | 6.1:+5157159 | MS.gene074189:CDS |
ATACCTGCAAGTTTAATATT+AGG | 0.295403 | 6.1:-5155908 | None:intergenic |
TCTTATGGTTCGGCGTCTTT+TGG | 0.304213 | 6.1:+5157141 | MS.gene074189:CDS |
GATAACTTGATTCCTTGTTT+TGG | 0.309163 | 6.1:+5155685 | MS.gene074189:CDS |
AATGGATATTGCCTGTTCAT+AGG | 0.310815 | 6.1:-5155632 | None:intergenic |
CTTTGCACCCATTGTTGAAA+TGG | 0.321773 | 6.1:+5156039 | MS.gene074189:CDS |
CCTCCTCCTCCGCAAAACTA+TGG | 0.332154 | 6.1:+5154962 | MS.gene074189:CDS |
GGAAATTCCTTCTCAGTATA+AGG | 0.336846 | 6.1:+5156936 | MS.gene074189:CDS |
ATTTCCTCTTTCGATCATAT+TGG | 0.366765 | 6.1:+5156640 | MS.gene074189:CDS |
TTCATATCCGGACCCTCATT+CGG | 0.368752 | 6.1:+5154838 | MS.gene074189:CDS |
TACTTCAAAACCTTATGGTT+TGG | 0.369905 | 6.1:+5157164 | MS.gene074189:CDS |
AACAGGCAATATCCATTATT+GGG | 0.375499 | 6.1:+5155638 | MS.gene074189:CDS |
ATTTGCTCTCGCAGCATTGA+TGG | 0.382499 | 6.1:+5156915 | MS.gene074189:CDS |
GGAGGTCGGGCATCATAATA+TGG | 0.386227 | 6.1:-5154941 | None:intergenic |
ATCAATTCCAAGAATAAGAT+TGG | 0.395299 | 6.1:-5155431 | None:intergenic |
CCCTCATTCGGGTTACGGTC+AGG | 0.396532 | 6.1:+5154850 | MS.gene074189:CDS |
TGTTGTGAATCATAAGTATA+AGG | 0.399777 | 6.1:-5154884 | None:intergenic |
TTCTTCTTGGAATTCATATC+CGG | 0.401443 | 6.1:+5154826 | MS.gene074189:CDS |
TGGAGGCCAATACCATGTTT+TGG | 0.401526 | 6.1:+5156084 | MS.gene074189:CDS |
CCATTGCAAAATCTTTCATC+TGG | 0.405804 | 6.1:-5155848 | None:intergenic |
TCATATCCGGACCCTCATTC+GGG | 0.412709 | 6.1:+5154839 | MS.gene074189:CDS |
AAAGATATGGCCTTCGGATG+TGG | 0.416356 | 6.1:+5157834 | MS.gene074189:intron |
GCCCTCCCAACACCCTCTTA+TGG | 0.418141 | 6.1:+5157126 | MS.gene074189:CDS |
GGCCTTCGGATGTGGGCATC+AGG | 0.422320 | 6.1:+5157842 | MS.gene074189:CDS |
GTTAATGGGGCTCCTGCAGA+TGG | 0.427280 | 6.1:-5158235 | None:intergenic |
TTGCGGAGGAGGAGGAGGTC+GGG | 0.429594 | 6.1:-5154954 | None:intergenic |
GTCATGGCCATTTCAACAAT+GGG | 0.437074 | 6.1:-5156046 | None:intergenic |
AAGTTCTACTTATGAAAATC+AGG | 0.441934 | 6.1:+5157305 | MS.gene074189:CDS |
AAAAGACGCCGAACCATAAG+AGG | 0.442693 | 6.1:-5157139 | None:intergenic |
TGGTGTTGGAGATGGACCTT+GGG | 0.447860 | 6.1:+5156664 | MS.gene074189:CDS |
GCAATAGAGCTTAATCTACT+TGG | 0.451020 | 6.1:+5156961 | MS.gene074189:CDS |
TCTTTAGTTTGTGAATTTCA+CGG | 0.452739 | 6.1:+5156849 | MS.gene074189:intron |
CCGGACCCTCATTCGGGTTA+CGG | 0.455689 | 6.1:+5154845 | MS.gene074189:CDS |
GTTGGGAGGGCGACTCTAGT+TGG | 0.462329 | 6.1:-5157114 | None:intergenic |
ACCTGTCCACTCGTTGCTCT+TGG | 0.464264 | 6.1:-5155458 | None:intergenic |
TTCAAACGTGTCCCATCTGC+AGG | 0.464621 | 6.1:+5158223 | MS.gene074189:CDS |
TTATCACCAAAACATGGTAT+TGG | 0.464748 | 6.1:-5156090 | None:intergenic |
ATGGATATTGCCTGTTCATA+GGG | 0.464896 | 6.1:-5155631 | None:intergenic |
TTGGTGTTGGAGATGGACCT+TGG | 0.465147 | 6.1:+5156663 | MS.gene074189:CDS |
CATTCCTCCTTCACGAAAAG+AGG | 0.466144 | 6.1:+5156888 | MS.gene074189:CDS |
ATTGCCTGTTCATAGGGATT+CGG | 0.466672 | 6.1:-5155625 | None:intergenic |
ACGATCAGAGAAAGTTAGAT+AGG | 0.468557 | 6.1:+5155023 | MS.gene074189:CDS |
TCGATCATATTGGTTGGTGT+TGG | 0.471572 | 6.1:+5156650 | MS.gene074189:CDS |
CCCAACACCCTCTTATGGTT+CGG | 0.473927 | 6.1:+5157131 | MS.gene074189:CDS |
CCGAACCATAAGAGGGTGTT+GGG | 0.476496 | 6.1:-5157131 | None:intergenic |
ACAATGGGTGCAAAGGATGT+AGG | 0.479320 | 6.1:-5156031 | None:intergenic |
CCTCATTCGGGTTACGGTCA+GGG | 0.480031 | 6.1:+5154851 | MS.gene074189:CDS |
GGCACTCTGCCACTAGTTTG+AGG | 0.484672 | 6.1:-5154992 | None:intergenic |
CTTTCTCTGATCGTCATGAC+GGG | 0.486062 | 6.1:-5155014 | None:intergenic |
TCATAATATGGTTGATAAGA+AGG | 0.493839 | 6.1:-5154929 | None:intergenic |
TGGTCCGAATCCCTATGAAC+AGG | 0.495929 | 6.1:+5155621 | MS.gene074189:CDS |
ACTGAAGCTCTTGCACGTGC+AGG | 0.500884 | 6.1:+5155397 | MS.gene074189:CDS |
GGTGATAATTGCAGATGGCC+AGG | 0.501144 | 6.1:+5156105 | MS.gene074189:CDS |
CCGTAACCCGAATGAGGGTC+CGG | 0.501311 | 6.1:-5154845 | None:intergenic |
CAACTTGTTTGACGACGTCT+TGG | 0.503494 | 6.1:-5157260 | None:intergenic |
ACAGAAGATGCCAAACCATA+AGG | 0.505095 | 6.1:-5157174 | None:intergenic |
CAATGGGTGCAAAGGATGTA+GGG | 0.505612 | 6.1:-5156030 | None:intergenic |
TTTGCGGAGGAGGAGGAGGT+CGG | 0.506457 | 6.1:-5154955 | None:intergenic |
TGGATGCCATTGTCGAGGCC+AGG | 0.508765 | 6.1:+5156537 | MS.gene074189:CDS |
CCAACCAATATGATCGAAAG+AGG | 0.511733 | 6.1:-5156644 | None:intergenic |
TGGTACGAAGGTGGGTAAGA+AGG | 0.512902 | 6.1:-5157240 | None:intergenic |
ACATGGGAGGCTCAGTCCAC+AGG | 0.514845 | 6.1:+5156502 | MS.gene074189:CDS |
AAGATATGGCCTTCGGATGT+GGG | 0.516272 | 6.1:+5157835 | MS.gene074189:intron |
AAATTATCGAAGGCCCTAGC+TGG | 0.518132 | 6.1:-5156716 | None:intergenic |
GACGTCGTCAAACAAGTTGT+TGG | 0.522388 | 6.1:+5157264 | MS.gene074189:CDS |
CCTCTTTCGATCATATTGGT+TGG | 0.522830 | 6.1:+5156644 | MS.gene074189:CDS |
TCCACGGTCTTCTGCTCCTG+TGG | 0.524421 | 6.1:-5156518 | None:intergenic |
ACTTTCTCTGATCGTCATGA+CGG | 0.526481 | 6.1:-5155015 | None:intergenic |
ATATTGGTTGGTGTTGGAGA+TGG | 0.526977 | 6.1:+5156656 | MS.gene074189:CDS |
ACCAAGAGCAACGAGTGGAC+AGG | 0.529829 | 6.1:+5155457 | MS.gene074189:CDS |
GGCCTCGACAATGGCATCCA+CGG | 0.533160 | 6.1:-5156534 | None:intergenic |
CCAAAGAGGATAATAATTTG+AGG | 0.533593 | 6.1:+5154765 | MS.gene074189:CDS |
AGAGGATAATAATTTGAGGC+GGG | 0.534520 | 6.1:+5154769 | MS.gene074189:CDS |
TTGATGACAATATGCCAGCT+AGG | 0.536974 | 6.1:+5156702 | MS.gene074189:CDS |
TGTCATGGCCATTTCAACAA+TGG | 0.538180 | 6.1:-5156047 | None:intergenic |
CCCTGACCGTAACCCGAATG+AGG | 0.541654 | 6.1:-5154851 | None:intergenic |
TAAGTAGAACTTGGGGCAGA+AGG | 0.541739 | 6.1:-5157294 | None:intergenic |
AGCTTGCATCACATCGGGAA+TGG | 0.543450 | 6.1:+5155601 | MS.gene074189:CDS |
ATCCATTATTGGGAAAACCT+TGG | 0.543835 | 6.1:+5155648 | MS.gene074189:CDS |
GGCGACTCTAGTTGGAGCAT+TGG | 0.544251 | 6.1:-5157106 | None:intergenic |
AGAAGTATTGACACTGAACA+TGG | 0.549006 | 6.1:+5156485 | MS.gene074189:CDS |
CATTTCAACAATGGGTGCAA+AGG | 0.552326 | 6.1:-5156038 | None:intergenic |
TGGACCTTGGGACATGATGA+AGG | 0.552430 | 6.1:+5156676 | MS.gene074189:CDS |
GCCGAACCATAAGAGGGTGT+TGG | 0.555869 | 6.1:-5157132 | None:intergenic |
ATCCTCATCAAATGCAGCCA+AGG | 0.564689 | 6.1:-5155665 | None:intergenic |
CAATAGAGCTTAATCTACTT+GGG | 0.567533 | 6.1:+5156962 | MS.gene074189:CDS |
ACGACGTCTTGGTACGAAGG+TGG | 0.573377 | 6.1:-5157249 | None:intergenic |
ACCATAAGAGGGTGTTGGGA+GGG | 0.576369 | 6.1:-5157127 | None:intergenic |
TTATCACCTGGCCTCGACAA+TGG | 0.576692 | 6.1:-5156543 | None:intergenic |
ATTGCAGCCTTATACTGAGA+AGG | 0.585676 | 6.1:-5156943 | None:intergenic |
AACCTTGGCTGCATTTGATG+AGG | 0.588955 | 6.1:+5155663 | MS.gene074189:CDS |
GAATAAGATTGGAAGACTCA+AGG | 0.592639 | 6.1:-5155420 | None:intergenic |
CGACGTCTTGGTACGAAGGT+GGG | 0.594009 | 6.1:-5157248 | None:intergenic |
TGATGACAATATGCCAGCTA+GGG | 0.594660 | 6.1:+5156703 | MS.gene074189:CDS |
AACTCCTTCATCATGTCCCA+AGG | 0.595718 | 6.1:-5156680 | None:intergenic |
AACCATAAGAGGGTGTTGGG+AGG | 0.605542 | 6.1:-5157128 | None:intergenic |
CCTGACCGTAACCCGAATGA+GGG | 0.607945 | 6.1:-5154850 | None:intergenic |
TTGACGACGTCTTGGTACGA+AGG | 0.611236 | 6.1:-5157252 | None:intergenic |
GTTTACCTGAAAATTATCGA+AGG | 0.611679 | 6.1:-5156726 | None:intergenic |
AATCTTAAACAGTAGTCGGA+AGG | 0.612928 | 6.1:+5157083 | MS.gene074189:intron |
TACCTGATGCCCACATCCGA+AGG | 0.612987 | 6.1:-5157844 | None:intergenic |
TGACAGACATGTTGCGAATG+CGG | 0.613284 | 6.1:+5158192 | MS.gene074189:intron |
GGATATGAGCCTCAAACTAG+TGG | 0.613808 | 6.1:+5154983 | MS.gene074189:CDS |
TTAATGGGGCTCCTGCAGAT+GGG | 0.618309 | 6.1:-5158234 | None:intergenic |
GACCGTGGATGCCATTGTCG+AGG | 0.620761 | 6.1:+5156532 | MS.gene074189:CDS |
CCATCCCCGAATCCAAAACA+AGG | 0.621252 | 6.1:-5155697 | None:intergenic |
AAGAGGATAATAATTTGAGG+CGG | 0.623971 | 6.1:+5154768 | MS.gene074189:CDS |
TCAAAACTAGCAGCATGAGA+AGG | 0.631711 | 6.1:-5157207 | None:intergenic |
CTGCAATTATCACCAAAACA+TGG | 0.636469 | 6.1:-5156096 | None:intergenic |
ACTCTGCTCAACGATTGTCA+TGG | 0.648042 | 6.1:-5156062 | None:intergenic |
GGTTGTTGTGACTCGTGCGT+AGG | 0.650682 | 6.1:-5154908 | None:intergenic |
ACAATCGTTGAGCAGAGTGG+AGG | 0.656204 | 6.1:+5156067 | MS.gene074189:CDS |
ATGACAATCGTTGAGCAGAG+TGG | 0.657140 | 6.1:+5156064 | MS.gene074189:CDS |
AGTTAGATAGGAAATACTCA+AGG | 0.660548 | 6.1:+5155035 | MS.gene074189:CDS |
TGTGAATCATAAGTATAAGG+AGG | 0.665030 | 6.1:-5154881 | None:intergenic |
GAATTGAGTTGATTGATGGG+GGG | 0.672957 | 6.1:+5154734 | None:intergenic |
AAAGACGCCGAACCATAAGA+GGG | 0.674020 | 6.1:-5157138 | None:intergenic |
ATTTCACCAAGAGCAACGAG+TGG | 0.683170 | 6.1:+5155452 | MS.gene074189:CDS |
TCCACAGGAGCAGAAGACCG+TGG | 0.684259 | 6.1:+5156517 | MS.gene074189:CDS |
GAAGTATTGACACTGAACAT+GGG | 0.689699 | 6.1:+5156486 | MS.gene074189:CDS |
GTATTGACACTGAACATGGG+AGG | 0.694374 | 6.1:+5156489 | MS.gene074189:CDS |
TTTCTCTGATCGTCATGACG+GGG | 0.719608 | 6.1:-5155013 | None:intergenic |
CATTCGGGTTACGGTCAGGG+CGG | 0.722179 | 6.1:+5154854 | MS.gene074189:CDS |
TAATTACAACTCCATAGACG+AGG | 0.735332 | 6.1:+5155066 | MS.gene074189:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CATTTTATATGTTTAATATA+GGG | + | chr6.1:5157697-5157716 | MS.gene074189:intron | 10.0% |
!! | AAACTATAAATGTATAGATA+TGG | - | chr6.1:5155488-5155507 | None:intergenic | 15.0% |
!! | AATAGAGTATATAACTAAAT+TGG | - | chr6.1:5158104-5158123 | None:intergenic | 15.0% |
!! | ACTTGTATTTATAATTACAA+TGG | + | chr6.1:5156299-5156318 | MS.gene074189:intron | 15.0% |
!! | AGATAAAAACTATACAAAAT+CGG | - | chr6.1:5155110-5155129 | None:intergenic | 15.0% |
!! | CTATTTAATATATATCTGAA+AGG | + | chr6.1:5157598-5157617 | MS.gene074189:intron | 15.0% |
!! | CTTTCAGATATATATTAAAT+AGG | - | chr6.1:5157600-5157619 | None:intergenic | 15.0% |
!!! | ATTTGCATAATTTTATTGTT+CGG | + | chr6.1:5157662-5157681 | MS.gene074189:intron | 15.0% |
!!! | GCATTTTATATGTTTAATAT+AGG | + | chr6.1:5157696-5157715 | MS.gene074189:intron | 15.0% |
!!! | GTTAAAATGTTCTAAAATTT+TGG | + | chr6.1:5156787-5156806 | MS.gene074189:intron | 15.0% |
!!! | TTATTCATCTTTTTTCTTTT+GGG | + | chr6.1:5155296-5155315 | MS.gene074189:intron | 15.0% |
!! | AAAAGAGATAATAATACTGA+AGG | - | chr6.1:5157006-5157025 | None:intergenic | 20.0% |
!! | AGCAATAAAAAATACAAATC+TGG | + | chr6.1:5157935-5157954 | MS.gene074189:intron | 20.0% |
!! | ATGAATAGAAAGATAAATGA+AGG | - | chr6.1:5156207-5156226 | None:intergenic | 20.0% |
!! | TATTAATCTTAAACAGTAGT+CGG | + | chr6.1:5157079-5157098 | MS.gene074189:intron | 20.0% |
!! | TTATACTTATATCTCATTAC+AGG | + | chr6.1:5155372-5155391 | MS.gene074189:intron | 20.0% |
!! | TTATCTTTCTATTCATTCAA+AGG | + | chr6.1:5156211-5156230 | MS.gene074189:intron | 20.0% |
!!! | AATCTGGTTTATAAGTATTT+TGG | + | chr6.1:5157951-5157970 | MS.gene074189:intron | 20.0% |
!!! | AATTTGTTAATTTTGCTGTA+AGG | - | chr6.1:5157770-5157789 | None:intergenic | 20.0% |
!!! | CTTATTCATCTTTTTTCTTT+TGG | + | chr6.1:5155295-5155314 | MS.gene074189:intron | 20.0% |
!!! | GTATTGATATTTATGTGATT+TGG | + | chr6.1:5155208-5155227 | MS.gene074189:intron | 20.0% |
!!! | TATTGTAGAATTTTTGTTTG+TGG | + | chr6.1:5155749-5155768 | MS.gene074189:intron | 20.0% |
!!! | TTATAATTACAATGGTGTTA+CGG | + | chr6.1:5156307-5156326 | MS.gene074189:intron | 20.0% |
!!! | TTTGTATTTTTTATTGCTCA+TGG | - | chr6.1:5157933-5157952 | None:intergenic | 20.0% |
! | AAGTTCTACTTATGAAAATC+AGG | + | chr6.1:5157305-5157324 | MS.gene074189:CDS | 25.0% |
! | ATACCTGCAAGTTTAATATT+AGG | - | chr6.1:5155911-5155930 | None:intergenic | 25.0% |
! | ATCAATTCCAAGAATAAGAT+TGG | - | chr6.1:5155434-5155453 | None:intergenic | 25.0% |
! | ATTAAACATATAAAATGCGC+CGG | - | chr6.1:5157694-5157713 | None:intergenic | 25.0% |
! | ATTCATCATCTGAATTATTG+TGG | + | chr6.1:5156811-5156830 | MS.gene074189:intron | 25.0% |
! | ATTGTTTACCTCAGAAATAT+GGG | - | chr6.1:5158138-5158157 | None:intergenic | 25.0% |
! | CATTCAAAGGAAAAAGTAAT+TGG | + | chr6.1:5156224-5156243 | MS.gene074189:intron | 25.0% |
! | CTTAATTCTAACAATGTAGA+TGG | + | chr6.1:5156441-5156460 | MS.gene074189:intron | 25.0% |
! | TATTGTTTACCTCAGAAATA+TGG | - | chr6.1:5158139-5158158 | None:intergenic | 25.0% |
! | TATTGTTTAGGAATATTGAC+AGG | + | chr6.1:5156414-5156433 | MS.gene074189:intron | 25.0% |
! | TGTTGTGAATCATAAGTATA+AGG | - | chr6.1:5154887-5154906 | None:intergenic | 25.0% |
! | TTTAAAGACCAAAAAAGTCT+TGG | + | chr6.1:5158057-5158076 | MS.gene074189:intron | 25.0% |
! | TTTCATTGGTCAAACATATA+GGG | - | chr6.1:5157815-5157834 | None:intergenic | 25.0% |
! | TTTGACCAATGAAAAAGATA+TGG | + | chr6.1:5157821-5157840 | MS.gene074189:intron | 25.0% |
!! | ATTTTCATAAGTAGAACTTG+GGG | - | chr6.1:5157304-5157323 | None:intergenic | 25.0% |
!! | GATTTTCATAAGTAGAACTT+GGG | - | chr6.1:5157305-5157324 | None:intergenic | 25.0% |
!! | TGATTTTCATAAGTAGAACT+TGG | - | chr6.1:5157306-5157325 | None:intergenic | 25.0% |
!! | TTTTCATTGGTCAAACATAT+AGG | - | chr6.1:5157816-5157835 | None:intergenic | 25.0% |
!!! | AAATAACACCAAGACTTTTT+TGG | - | chr6.1:5158068-5158087 | None:intergenic | 25.0% |
!!! | AATACTTATGTTTTAACGTC+AGG | + | chr6.1:5156007-5156026 | MS.gene074189:intron | 25.0% |
!!! | AATAGGTCTGTGTTTTTTTA+GGG | - | chr6.1:5157907-5157926 | None:intergenic | 25.0% |
!!! | TCATAATATGGTTGATAAGA+AGG | - | chr6.1:5154932-5154951 | None:intergenic | 25.0% |
!!! | TCTTTAGTTTGTGAATTTCA+CGG | + | chr6.1:5156849-5156868 | MS.gene074189:intron | 25.0% |
!!! | TGGTGTTATTTATTTAGCAT+GGG | + | chr6.1:5158077-5158096 | MS.gene074189:intron | 25.0% |
!!! | TTGGTGTTATTTATTTAGCA+TGG | + | chr6.1:5158076-5158095 | MS.gene074189:intron | 25.0% |
AAAGATAACCCTAAACATAC+TGG | - | chr6.1:5156146-5156165 | None:intergenic | 30.0% | |
AACAGGCAATATCCATTATT+GGG | + | chr6.1:5155638-5155657 | MS.gene074189:CDS | 30.0% | |
AAGAGGATAATAATTTGAGG+CGG | + | chr6.1:5154768-5154787 | MS.gene074189:CDS | 30.0% | |
AAGATAACCCTAAACATACT+GGG | - | chr6.1:5156145-5156164 | None:intergenic | 30.0% | |
AATGAAAAAGATATGGCCTT+CGG | + | chr6.1:5157828-5157847 | MS.gene074189:intron | 30.0% | |
AGACAAGATGTTCGTAAAAA+CGG | - | chr6.1:5156596-5156615 | None:intergenic | 30.0% | |
AGATGAATAAGTAGCATTGT+CGG | - | chr6.1:5155286-5155305 | None:intergenic | 30.0% | |
AGTTAGATAGGAAATACTCA+AGG | + | chr6.1:5155035-5155054 | MS.gene074189:CDS | 30.0% | |
ATTATGCAAATAATACAGCC+TGG | - | chr6.1:5157653-5157672 | None:intergenic | 30.0% | |
ATTCTTTACCCAGTATGTTT+AGG | + | chr6.1:5156134-5156153 | MS.gene074189:intron | 30.0% | |
ATTTCCTCTTTCGATCATAT+TGG | + | chr6.1:5156640-5156659 | MS.gene074189:CDS | 30.0% | |
CAATAGAGCTTAATCTACTT+GGG | + | chr6.1:5156962-5156981 | MS.gene074189:CDS | 30.0% | |
CCAAAGAGGATAATAATTTG+AGG | + | chr6.1:5154765-5154784 | MS.gene074189:CDS | 30.0% | |
CCTCAAATTATTATCCTCTT+TGG | - | chr6.1:5154768-5154787 | None:intergenic | 30.0% | |
CTAAAAAAACACAGACCTAT+TGG | + | chr6.1:5157906-5157925 | MS.gene074189:intron | 30.0% | |
GAAGAAAAAGATATCAGCAT+GGG | - | chr6.1:5155153-5155172 | None:intergenic | 30.0% | |
GGAATATTAGCAAGTAATGA+AGG | + | chr6.1:5156385-5156404 | MS.gene074189:intron | 30.0% | |
GTAATCTAATTAGTCAACTG+AGG | - | chr6.1:5157483-5157502 | None:intergenic | 30.0% | |
GTTCCTAATATTAAACTTGC+AGG | + | chr6.1:5155905-5155924 | MS.gene074189:CDS | 30.0% | |
GTTTACCTGAAAATTATCGA+AGG | - | chr6.1:5156729-5156748 | None:intergenic | 30.0% | |
TACTTCAAAACCTTATGGTT+TGG | + | chr6.1:5157164-5157183 | MS.gene074189:CDS | 30.0% | |
TAGGTTAGTGCTAATCAATT+GGG | - | chr6.1:5156348-5156367 | None:intergenic | 30.0% | |
TATAGGGATTGAGTATGAAA+TGG | + | chr6.1:5157713-5157732 | MS.gene074189:intron | 30.0% | |
TGAAGGAAGTTGTATTGTTT+AGG | + | chr6.1:5156402-5156421 | MS.gene074189:intron | 30.0% | |
TGTGAATCATAAGTATAAGG+AGG | - | chr6.1:5154884-5154903 | None:intergenic | 30.0% | |
TTATCACCAAAACATGGTAT+TGG | - | chr6.1:5156093-5156112 | None:intergenic | 30.0% | |
TTCTTCTTGGAATTCATATC+CGG | + | chr6.1:5154826-5154845 | MS.gene074189:CDS | 30.0% | |
TTCTTTACCCAGTATGTTTA+GGG | + | chr6.1:5156135-5156154 | MS.gene074189:intron | 30.0% | |
TTTGGTACTTCAAAACCTTA+TGG | + | chr6.1:5157159-5157178 | MS.gene074189:CDS | 30.0% | |
! | AATTTCTTCCCATATTTCTG+AGG | + | chr6.1:5158127-5158146 | MS.gene074189:intron | 30.0% |
! | ATTCACATCTGAGATTCTTA+AGG | + | chr6.1:5158010-5158029 | MS.gene074189:intron | 30.0% |
! | GATATTTATGTGATTTGGCA+TGG | + | chr6.1:5155213-5155232 | MS.gene074189:intron | 30.0% |
! | GTGGTTTAAAATGTGCTAAT+GGG | + | chr6.1:5155768-5155787 | MS.gene074189:intron | 30.0% |
! | TCTGAGGTAAACAATAGATT+GGG | + | chr6.1:5158143-5158162 | MS.gene074189:intron | 30.0% |
! | TGTGGTTTAAAATGTGCTAA+TGG | + | chr6.1:5155767-5155786 | MS.gene074189:intron | 30.0% |
!! | CATTATGCTGCATAGTTTTA+TGG | + | chr6.1:5157565-5157584 | MS.gene074189:intron | 30.0% |
!! | GATAACTTGATTCCTTGTTT+TGG | + | chr6.1:5155685-5155704 | MS.gene074189:CDS | 30.0% |
!! | TGTAGAGCTTTAAATTCATC+AGG | - | chr6.1:5155175-5155194 | None:intergenic | 30.0% |
!! | TTCTGAGGTAAACAATAGAT+TGG | + | chr6.1:5158142-5158161 | MS.gene074189:intron | 30.0% |
!!! | ATAGGTCTGTGTTTTTTTAG+GGG | - | chr6.1:5157906-5157925 | None:intergenic | 30.0% |
!!! | CAATAGGTCTGTGTTTTTTT+AGG | - | chr6.1:5157908-5157927 | None:intergenic | 30.0% |
!!! | GATTTGAAGAAGTTTTGAGT+CGG | + | chr6.1:5155870-5155889 | MS.gene074189:CDS | 30.0% |
!!! | TTGATTCCTTGTTTTGGATT+CGG | + | chr6.1:5155691-5155710 | MS.gene074189:CDS | 30.0% |
AATAATACAGCCTGGATGAA+TGG | - | chr6.1:5157645-5157664 | None:intergenic | 35.0% | |
AATCTTAAACAGTAGTCGGA+AGG | + | chr6.1:5157083-5157102 | MS.gene074189:intron | 35.0% | |
AATGGATATTGCCTGTTCAT+AGG | - | chr6.1:5155635-5155654 | None:intergenic | 35.0% | |
ACGATCAGAGAAAGTTAGAT+AGG | + | chr6.1:5155023-5155042 | MS.gene074189:CDS | 35.0% | |
AGAAAAAGCTTGCATCACAT+CGG | + | chr6.1:5155595-5155614 | MS.gene074189:CDS | 35.0% | |
AGACAGAGTATATGCTTTGT+TGG | - | chr6.1:5157510-5157529 | None:intergenic | 35.0% | |
AGCATATACTCTGTCTAATG+TGG | + | chr6.1:5157514-5157533 | MS.gene074189:intron | 35.0% | |
ATAAGAGCAACAAGACAAGT+AGG | - | chr6.1:5155940-5155959 | None:intergenic | 35.0% | |
ATCCATTATTGGGAAAACCT+TGG | + | chr6.1:5155648-5155667 | MS.gene074189:CDS | 35.0% | |
ATGGATATTGCCTGTTCATA+GGG | - | chr6.1:5155634-5155653 | None:intergenic | 35.0% | |
CAATTGATTAGCACTAACCT+AGG | + | chr6.1:5156347-5156366 | MS.gene074189:intron | 35.0% | |
CCATTGCAAAATCTTTCATC+TGG | - | chr6.1:5155851-5155870 | None:intergenic | 35.0% | |
CTAGGTTAGTGCTAATCAAT+TGG | - | chr6.1:5156349-5156368 | None:intergenic | 35.0% | |
CTGCAATTATCACCAAAACA+TGG | - | chr6.1:5156099-5156118 | None:intergenic | 35.0% | |
GAACAGGCAATATCCATTAT+TGG | + | chr6.1:5155637-5155656 | MS.gene074189:CDS | 35.0% | |
GAATAAGATTGGAAGACTCA+AGG | - | chr6.1:5155423-5155442 | None:intergenic | 35.0% | |
GAGTCTTCCAATCTTATTCT+TGG | + | chr6.1:5155424-5155443 | MS.gene074189:CDS | 35.0% | |
GCAATAGAGCTTAATCTACT+TGG | + | chr6.1:5156961-5156980 | MS.gene074189:CDS | 35.0% | |
GGAAATTCCTTCTCAGTATA+AGG | + | chr6.1:5156936-5156955 | MS.gene074189:CDS | 35.0% | |
GGAAGAAAAAGATATCAGCA+TGG | - | chr6.1:5155154-5155173 | None:intergenic | 35.0% | |
TAATTACAACTCCATAGACG+AGG | + | chr6.1:5155066-5155085 | MS.gene074189:CDS | 35.0% | |
TCAAGAGCAAATGTCCTAAT+TGG | + | chr6.1:5157879-5157898 | MS.gene074189:intron | 35.0% | |
TCTAATGTGGAGAGATGAAT+GGG | + | chr6.1:5157527-5157546 | MS.gene074189:intron | 35.0% | |
TGGGTAAAGAATAGAATACC+TGG | - | chr6.1:5156126-5156145 | None:intergenic | 35.0% | |
TTGATGCTGCCATAATATCA+CGG | - | chr6.1:5155799-5155818 | None:intergenic | 35.0% | |
TTTATTGCTCATGGACCAAT+AGG | - | chr6.1:5157924-5157943 | None:intergenic | 35.0% | |
! | AGAGGATAATAATTTGAGGC+GGG | + | chr6.1:5154769-5154788 | MS.gene074189:CDS | 35.0% |
! | CCAGATGAAAGATTTTGCAA+TGG | + | chr6.1:5155848-5155867 | MS.gene074189:CDS | 35.0% |
! | TGCTTTTCCTTGTAGCTTTT+GGG | + | chr6.1:5157443-5157462 | MS.gene074189:intron | 35.0% |
! | TTTTATTGTTCGGTTGCTTC+CGG | + | chr6.1:5157672-5157691 | MS.gene074189:intron | 35.0% |
!! | ACAATGTAGATGGCTTTGTT+TGG | + | chr6.1:5156451-5156470 | MS.gene074189:intron | 35.0% |
!! | AGAAGTATTGACACTGAACA+TGG | + | chr6.1:5156485-5156504 | MS.gene074189:CDS | 35.0% |
!! | GAAGGCCATATCTTTTTCAT+TGG | - | chr6.1:5157829-5157848 | None:intergenic | 35.0% |
!! | GAAGTATTGACACTGAACAT+GGG | + | chr6.1:5156486-5156505 | MS.gene074189:CDS | 35.0% |
!! | GTTTTGGTGATAATTGCAGA+TGG | + | chr6.1:5156100-5156119 | MS.gene074189:CDS | 35.0% |
!! | TTGCTTTTCCTTGTAGCTTT+TGG | + | chr6.1:5157442-5157461 | MS.gene074189:intron | 35.0% |
!!! | AAGAAGTTTTGAGTCGGTAT+AGG | + | chr6.1:5155876-5155895 | MS.gene074189:CDS | 35.0% |
!!! | AGAAGTTTTGAGTCGGTATA+GGG | + | chr6.1:5155877-5155896 | MS.gene074189:CDS | 35.0% |
!!! | AGCATTTTTTACCTCGTCTA+TGG | - | chr6.1:5155080-5155099 | None:intergenic | 35.0% |
!!! | GTTTTTTTAGGGGACCAATT+AGG | - | chr6.1:5157896-5157915 | None:intergenic | 35.0% |
!!! | TGATTCCTTGTTTTGGATTC+GGG | + | chr6.1:5155692-5155711 | MS.gene074189:CDS | 35.0% |
AACTTTGCAGCATTATCACC+TGG | - | chr6.1:5156558-5156577 | None:intergenic | 40.0% | |
ACAGAAGATGCCAAACCATA+AGG | - | chr6.1:5157177-5157196 | None:intergenic | 40.0% | |
ACTTTCTCTGATCGTCATGA+CGG | - | chr6.1:5155018-5155037 | None:intergenic | 40.0% | |
ATGAAGGAGAAAGCAAGAAG+CGG | - | chr6.1:5156191-5156210 | None:intergenic | 40.0% | |
ATTGCCTGTTCATAGGGATT+CGG | - | chr6.1:5155628-5155647 | None:intergenic | 40.0% | |
CATTTCAACAATGGGTGCAA+AGG | - | chr6.1:5156041-5156060 | None:intergenic | 40.0% | |
CCAACCAATATGATCGAAAG+AGG | - | chr6.1:5156647-5156666 | None:intergenic | 40.0% | |
CCTAGACTATACAGTTTCCT+AGG | - | chr6.1:5156367-5156386 | None:intergenic | 40.0% | |
CCTAGGAAACTGTATAGTCT+AGG | + | chr6.1:5156364-5156383 | MS.gene074189:intron | 40.0% | |
CCTCTTTCGATCATATTGGT+TGG | + | chr6.1:5156644-5156663 | MS.gene074189:CDS | 40.0% | |
CTTTGCACCCATTGTTGAAA+TGG | + | chr6.1:5156039-5156058 | MS.gene074189:CDS | 40.0% | |
GAAAAAGCTTGCATCACATC+GGG | + | chr6.1:5155596-5155615 | MS.gene074189:CDS | 40.0% | |
GTCATGGCCATTTCAACAAT+GGG | - | chr6.1:5156049-5156068 | None:intergenic | 40.0% | |
GTCTAATGTGGAGAGATGAA+TGG | + | chr6.1:5157526-5157545 | MS.gene074189:intron | 40.0% | |
TCAAAACTAGCAGCATGAGA+AGG | - | chr6.1:5157210-5157229 | None:intergenic | 40.0% | |
TGATGACAATATGCCAGCTA+GGG | + | chr6.1:5156703-5156722 | MS.gene074189:CDS | 40.0% | |
TGGGCATTACCGTGATATTA+TGG | + | chr6.1:5155787-5155806 | MS.gene074189:intron | 40.0% | |
TGTCATGGCCATTTCAACAA+TGG | - | chr6.1:5156050-5156069 | None:intergenic | 40.0% | |
TTGAGCAAATCAGAGAAGAC+TGG | + | chr6.1:5156164-5156183 | MS.gene074189:intron | 40.0% | |
! | AGCCAACATCATTTTCAACC+AGG | - | chr6.1:5155239-5155258 | None:intergenic | 40.0% |
! | AGCCAAGGTTTTCCCAATAA+TGG | - | chr6.1:5155653-5155672 | None:intergenic | 40.0% |
! | ATTGCAGCCTTATACTGAGA+AGG | - | chr6.1:5156946-5156965 | None:intergenic | 40.0% |
! | GCTTTTCCTTGTAGCTTTTG+GGG | + | chr6.1:5157444-5157463 | MS.gene074189:intron | 40.0% |
! | TAGGGCCTTCGATAATTTTC+AGG | + | chr6.1:5156721-5156740 | MS.gene074189:CDS | 40.0% |
! | TCGATCATATTGGTTGGTGT+TGG | + | chr6.1:5156650-5156669 | MS.gene074189:CDS | 40.0% |
! | TTGATGACAATATGCCAGCT+AGG | + | chr6.1:5156702-5156721 | MS.gene074189:CDS | 40.0% |
!! | ATATTGGTTGGTGTTGGAGA+TGG | + | chr6.1:5156656-5156675 | MS.gene074189:CDS | 40.0% |
!! | GGCTCATATCCATAGTTTTG+CGG | - | chr6.1:5154974-5154993 | None:intergenic | 40.0% |
!! | TCATATCCATAGTTTTGCGG+AGG | - | chr6.1:5154971-5154990 | None:intergenic | 40.0% |
!!! | CAGCATGAGAAGGTTTTGAA+GGG | - | chr6.1:5157200-5157219 | None:intergenic | 40.0% |
!!! | GATTCCTTGTTTTGGATTCG+GGG | + | chr6.1:5155693-5155712 | MS.gene074189:CDS | 40.0% |
AAAAGACGCCGAACCATAAG+AGG | - | chr6.1:5157142-5157161 | None:intergenic | 45.0% | |
AAAGACGCCGAACCATAAGA+GGG | - | chr6.1:5157141-5157160 | None:intergenic | 45.0% | |
AAAGATATGGCCTTCGGATG+TGG | + | chr6.1:5157834-5157853 | MS.gene074189:intron | 45.0% | |
AAATTATCGAAGGCCCTAGC+TGG | - | chr6.1:5156719-5156738 | None:intergenic | 45.0% | |
AACCTTGGCTGCATTTGATG+AGG | + | chr6.1:5155663-5155682 | MS.gene074189:CDS | 45.0% | |
AACTCCTTCATCATGTCCCA+AGG | - | chr6.1:5156683-5156702 | None:intergenic | 45.0% | |
AAGATATGGCCTTCGGATGT+GGG | + | chr6.1:5157835-5157854 | MS.gene074189:intron | 45.0% | |
AAGTAGCATTGTCGGTGAGA+AGG | - | chr6.1:5155278-5155297 | None:intergenic | 45.0% | |
ACAATGGGTGCAAAGGATGT+AGG | - | chr6.1:5156034-5156053 | None:intergenic | 45.0% | |
ACTCTGCTCAACGATTGTCA+TGG | - | chr6.1:5156065-5156084 | None:intergenic | 45.0% | |
AGATAGCCCCAAAAGCTACA+AGG | - | chr6.1:5157453-5157472 | None:intergenic | 45.0% | |
ATCCTCATCAAATGCAGCCA+AGG | - | chr6.1:5155668-5155687 | None:intergenic | 45.0% | |
ATGACAATCGTTGAGCAGAG+TGG | + | chr6.1:5156064-5156083 | MS.gene074189:CDS | 45.0% | |
ATTTCACCAAGAGCAACGAG+TGG | + | chr6.1:5155452-5155471 | MS.gene074189:CDS | 45.0% | |
CAATGGGTGCAAAGGATGTA+GGG | - | chr6.1:5156033-5156052 | None:intergenic | 45.0% | |
CATTCCTCCTTCACGAAAAG+AGG | + | chr6.1:5156888-5156907 | MS.gene074189:CDS | 45.0% | |
CTGCTTCTGCTTCTTCTTCT+TGG | + | chr6.1:5154813-5154832 | MS.gene074189:CDS | 45.0% | |
CTTTCTCTGATCGTCATGAC+GGG | - | chr6.1:5155017-5155036 | None:intergenic | 45.0% | |
GACGTCGTCAAACAAGTTGT+TGG | + | chr6.1:5157264-5157283 | MS.gene074189:CDS | 45.0% | |
GGATATGAGCCTCAAACTAG+TGG | + | chr6.1:5154983-5155002 | MS.gene074189:CDS | 45.0% | |
GGCCTGGTTGAAAATGATGT+TGG | + | chr6.1:5155234-5155253 | MS.gene074189:intron | 45.0% | |
TAAGTAGAACTTGGGGCAGA+AGG | - | chr6.1:5157297-5157316 | None:intergenic | 45.0% | |
TGACAGACATGTTGCGAATG+CGG | + | chr6.1:5158192-5158211 | MS.gene074189:intron | 45.0% | |
TTCATATCCGGACCCTCATT+CGG | + | chr6.1:5154838-5154857 | MS.gene074189:CDS | 45.0% | |
TTGTCAACTGCCATTCATCC+AGG | + | chr6.1:5157632-5157651 | MS.gene074189:intron | 45.0% | |
TTTCTCTGATCGTCATGACG+GGG | - | chr6.1:5155016-5155035 | None:intergenic | 45.0% | |
! | AATGCTGCCTCTTTTCGTGA+AGG | - | chr6.1:5156898-5156917 | None:intergenic | 45.0% |
! | ATTTGCTCTCGCAGCATTGA+TGG | + | chr6.1:5156915-5156934 | MS.gene074189:CDS | 45.0% |
! | CAACTTGTTTGACGACGTCT+TGG | - | chr6.1:5157263-5157282 | None:intergenic | 45.0% |
! | GTATTGACACTGAACATGGG+AGG | + | chr6.1:5156489-5156508 | MS.gene074189:CDS | 45.0% |
! | TGGAGGCCAATACCATGTTT+TGG | + | chr6.1:5156084-5156103 | MS.gene074189:CDS | 45.0% |
! | TTATGTGATTTGGCATGGCC+TGG | + | chr6.1:5155218-5155237 | MS.gene074189:intron | 45.0% |
!! | GCAGCATGAGAAGGTTTTGA+AGG | - | chr6.1:5157201-5157220 | None:intergenic | 45.0% |
!! | TAGATGGCTTTGTTTGGTGC+AGG | + | chr6.1:5156457-5156476 | MS.gene074189:intron | 45.0% |
!! | TATCCATAGTTTTGCGGAGG+AGG | - | chr6.1:5154968-5154987 | None:intergenic | 45.0% |
!! | TCTTATGGTTCGGCGTCTTT+TGG | + | chr6.1:5157141-5157160 | MS.gene074189:CDS | 45.0% |
!!! | CTCATGCTGCTAGTTTTGAG+CGG | + | chr6.1:5157211-5157230 | MS.gene074189:CDS | 45.0% |
ACAATCGTTGAGCAGAGTGG+AGG | + | chr6.1:5156067-5156086 | MS.gene074189:CDS | 50.0% | |
AGCTTGCATCACATCGGGAA+TGG | + | chr6.1:5155601-5155620 | MS.gene074189:CDS | 50.0% | |
CCATCCCCGAATCCAAAACA+AGG | - | chr6.1:5155700-5155719 | None:intergenic | 50.0% | |
CCATGTTCTCGATCTCGATC+GGG | + | chr6.1:5157361-5157380 | MS.gene074189:intron | 50.0% | |
CCCAACACCCTCTTATGGTT+CGG | + | chr6.1:5157131-5157150 | MS.gene074189:CDS | 50.0% | |
GCCATGTTCTCGATCTCGAT+CGG | + | chr6.1:5157360-5157379 | MS.gene074189:intron | 50.0% | |
GGAGGTCGGGCATCATAATA+TGG | - | chr6.1:5154944-5154963 | None:intergenic | 50.0% | |
GGTGATAATTGCAGATGGCC+AGG | + | chr6.1:5156105-5156124 | MS.gene074189:CDS | 50.0% | |
TCATATCCGGACCCTCATTC+GGG | + | chr6.1:5154839-5154858 | MS.gene074189:CDS | 50.0% | |
TGGACCTTGGGACATGATGA+AGG | + | chr6.1:5156676-5156695 | MS.gene074189:CDS | 50.0% | |
TGGTACGAAGGTGGGTAAGA+AGG | - | chr6.1:5157243-5157262 | None:intergenic | 50.0% | |
TGGTCCGAATCCCTATGAAC+AGG | + | chr6.1:5155621-5155640 | MS.gene074189:CDS | 50.0% | |
TTAATGGGGCTCCTGCAGAT+GGG | - | chr6.1:5158237-5158256 | None:intergenic | 50.0% | |
TTATCACCTGGCCTCGACAA+TGG | - | chr6.1:5156546-5156565 | None:intergenic | 50.0% | |
TTCAAACGTGTCCCATCTGC+AGG | + | chr6.1:5158223-5158242 | MS.gene074189:CDS | 50.0% | |
TTGACGACGTCTTGGTACGA+AGG | - | chr6.1:5157255-5157274 | None:intergenic | 50.0% | |
! | TGGTGTTGGAGATGGACCTT+GGG | + | chr6.1:5156664-5156683 | MS.gene074189:CDS | 50.0% |
!! | AACCATAAGAGGGTGTTGGG+AGG | - | chr6.1:5157131-5157150 | None:intergenic | 50.0% |
!! | ACCATAAGAGGGTGTTGGGA+GGG | - | chr6.1:5157130-5157149 | None:intergenic | 50.0% |
!! | CCGAACCATAAGAGGGTGTT+GGG | - | chr6.1:5157134-5157153 | None:intergenic | 50.0% |
!! | CTGAGCTCGATGTTGCTTTC+AGG | + | chr6.1:5155556-5155575 | MS.gene074189:intron | 50.0% |
!! | TTGGTGTTGGAGATGGACCT+TGG | + | chr6.1:5156663-5156682 | MS.gene074189:CDS | 50.0% |
!!! | CCTTGTTTTGGATTCGGGGA+TGG | + | chr6.1:5155697-5155716 | MS.gene074189:CDS | 50.0% |
ACCAAGAGCAACGAGTGGAC+AGG | + | chr6.1:5155457-5155476 | MS.gene074189:CDS | 55.0% | |
ACCTGTCCACTCGTTGCTCT+TGG | - | chr6.1:5155461-5155480 | None:intergenic | 55.0% | |
ACGACGTCTTGGTACGAAGG+TGG | - | chr6.1:5157252-5157271 | None:intergenic | 55.0% | |
ACTGAAGCTCTTGCACGTGC+AGG | + | chr6.1:5155397-5155416 | MS.gene074189:CDS | 55.0% | |
CCCGATCGAGATCGAGAACA+TGG | - | chr6.1:5157364-5157383 | None:intergenic | 55.0% | |
CCTCCTCCTCCGCAAAACTA+TGG | + | chr6.1:5154962-5154981 | MS.gene074189:CDS | 55.0% | |
CCTGACCGTAACCCGAATGA+GGG | - | chr6.1:5154853-5154872 | None:intergenic | 55.0% | |
CGACGTCTTGGTACGAAGGT+GGG | - | chr6.1:5157251-5157270 | None:intergenic | 55.0% | |
GAGCAACGAGTGGACAGGTT+AGG | + | chr6.1:5155462-5155481 | MS.gene074189:intron | 55.0% | |
GGCGACTCTAGTTGGAGCAT+TGG | - | chr6.1:5157109-5157128 | None:intergenic | 55.0% | |
GGGGGGTCAAAGTTCCAAAG+AGG | + | chr6.1:5154751-5154770 | MS.gene074189:CDS | 55.0% | |
GGTTGTTGTGACTCGTGCGT+AGG | - | chr6.1:5154911-5154930 | None:intergenic | 55.0% | |
GTTAATGGGGCTCCTGCAGA+TGG | - | chr6.1:5158238-5158257 | None:intergenic | 55.0% | |
TACCTGATGCCCACATCCGA+AGG | - | chr6.1:5157847-5157866 | None:intergenic | 55.0% | |
TCGATCTCGATCGGGCATGT+TGG | + | chr6.1:5157369-5157388 | MS.gene074189:intron | 55.0% | |
! | CCTCATTCGGGTTACGGTCA+GGG | + | chr6.1:5154851-5154870 | MS.gene074189:CDS | 55.0% |
! | GCCGAACCATAAGAGGGTGT+TGG | - | chr6.1:5157135-5157154 | None:intergenic | 55.0% |
! | GCTGCCTCTTTTCGTGAAGG+AGG | - | chr6.1:5156895-5156914 | None:intergenic | 55.0% |
! | GGCACTCTGCCACTAGTTTG+AGG | - | chr6.1:5154995-5155014 | None:intergenic | 55.0% |
!! | CCATAGTTTTGCGGAGGAGG+AGG | - | chr6.1:5154965-5154984 | None:intergenic | 55.0% |
!! | TAGTTTTGCGGAGGAGGAGG+AGG | - | chr6.1:5154962-5154981 | None:intergenic | 55.0% |
ACATGGGAGGCTCAGTCCAC+AGG | + | chr6.1:5156502-5156521 | MS.gene074189:CDS | 60.0% | |
CCCTGACCGTAACCCGAATG+AGG | - | chr6.1:5154854-5154873 | None:intergenic | 60.0% | |
CCGTAACCCGAATGAGGGTC+CGG | - | chr6.1:5154848-5154867 | None:intergenic | 60.0% | |
GACCGTGGATGCCATTGTCG+AGG | + | chr6.1:5156532-5156551 | MS.gene074189:CDS | 60.0% | |
GCCCTCCCAACACCCTCTTA+TGG | + | chr6.1:5157126-5157145 | MS.gene074189:CDS | 60.0% | |
GGCCTCGACAATGGCATCCA+CGG | - | chr6.1:5156537-5156556 | None:intergenic | 60.0% | |
GTTGGGAGGGCGACTCTAGT+TGG | - | chr6.1:5157117-5157136 | None:intergenic | 60.0% | |
TCCACAGGAGCAGAAGACCG+TGG | + | chr6.1:5156517-5156536 | MS.gene074189:CDS | 60.0% | |
TCCACGGTCTTCTGCTCCTG+TGG | - | chr6.1:5156521-5156540 | None:intergenic | 60.0% | |
TGGATGCCATTGTCGAGGCC+AGG | + | chr6.1:5156537-5156556 | MS.gene074189:CDS | 60.0% | |
TTTGCGGAGGAGGAGGAGGT+CGG | - | chr6.1:5154958-5154977 | None:intergenic | 60.0% | |
! | CATTCGGGTTACGGTCAGGG+CGG | + | chr6.1:5154854-5154873 | MS.gene074189:CDS | 60.0% |
! | CCCTCATTCGGGTTACGGTC+AGG | + | chr6.1:5154850-5154869 | MS.gene074189:CDS | 60.0% |
! | CCGGACCCTCATTCGGGTTA+CGG | + | chr6.1:5154845-5154864 | MS.gene074189:CDS | 60.0% |
GGCCTTCGGATGTGGGCATC+AGG | + | chr6.1:5157842-5157861 | MS.gene074189:CDS | 65.0% | |
TTGCGGAGGAGGAGGAGGTC+GGG | - | chr6.1:5154957-5154976 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 5154749 | 5158267 | 5154749 | ID=MS.gene074189 |
chr6.1 | mRNA | 5154749 | 5158267 | 5154749 | ID=MS.gene074189.t1;Parent=MS.gene074189 |
chr6.1 | exon | 5154749 | 5155087 | 5154749 | ID=MS.gene074189.t1.exon1;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5154749 | 5155087 | 5154749 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5155394 | 5155478 | 5155394 | ID=MS.gene074189.t1.exon2;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5155394 | 5155478 | 5155394 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5155578 | 5155718 | 5155578 | ID=MS.gene074189.t1.exon3;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5155578 | 5155718 | 5155578 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5155813 | 5155926 | 5155813 | ID=MS.gene074189.t1.exon4;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5155813 | 5155926 | 5155813 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5156029 | 5156126 | 5156029 | ID=MS.gene074189.t1.exon5;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5156029 | 5156126 | 5156029 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5156479 | 5156558 | 5156479 | ID=MS.gene074189.t1.exon6;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5156479 | 5156558 | 5156479 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5156637 | 5156742 | 5156637 | ID=MS.gene074189.t1.exon7;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5156637 | 5156742 | 5156637 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5156856 | 5156983 | 5156856 | ID=MS.gene074189.t1.exon8;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5156856 | 5156983 | 5156856 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5157095 | 5157326 | 5157095 | ID=MS.gene074189.t1.exon9;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5157095 | 5157326 | 5157095 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5157838 | 5157863 | 5157838 | ID=MS.gene074189.t1.exon10;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5157838 | 5157863 | 5157838 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
chr6.1 | exon | 5158198 | 5158267 | 5158198 | ID=MS.gene074189.t1.exon11;Parent=MS.gene074189.t1 |
chr6.1 | CDS | 5158198 | 5158267 | 5158198 | ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1 |
Gene Sequence |
Protein sequence |