AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene074189


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074189.t1 MTR_6g021730 96.854 445 12 2 1 444 1 444 0.0 877
MS.gene074189.t1 MTR_7g033100 68.919 444 97 7 1 444 1 403 0.0 570
MS.gene074189.t1 MTR_7g033100 69.005 442 96 7 1 442 1 401 0.0 567
MS.gene074189.t1 MTR_3g086520 62.556 446 121 10 1 444 24 425 0.0 519
MS.gene074189.t1 MTR_3g086520 62.556 446 121 10 1 444 27 428 0.0 519
MS.gene074189.t1 MTR_3g086520 62.556 446 121 10 1 444 27 428 0.0 519
MS.gene074189.t1 MTR_8g089670 60.841 452 124 9 1 444 27 433 9.22e-179 509
MS.gene074189.t1 MTR_3g075530 64.908 379 106 5 67 444 41 393 6.31e-170 485
MS.gene074189.t1 MTR_3g096520 64.423 312 107 1 98 405 79 390 3.92e-145 422
MS.gene074189.t1 MTR_3g096520 64.423 312 107 1 98 405 96 407 8.59e-145 422
MS.gene074189.t1 MTR_3g096520 72.075 265 74 0 98 362 79 343 7.30e-144 419
MS.gene074189.t1 MTR_2g063857 65.505 287 99 0 93 379 61 347 1.68e-139 405
MS.gene074189.t1 MTR_2g063857 66.548 281 94 0 99 379 67 347 4.10e-139 406
MS.gene074189.t1 MTR_6g092100 66.429 280 92 1 100 379 2 279 1.84e-136 395
MS.gene074189.t1 MTR_6g092020 65.480 281 94 1 99 379 46 323 1.28e-134 394
MS.gene074189.t1 MTR_2g063843 65.125 281 95 1 99 379 59 336 2.10e-133 391
MS.gene074189.t1 MTR_8g447220 70.677 266 78 0 99 364 52 317 1.18e-132 386
MS.gene074189.t1 MTR_8g447220 68.327 281 89 0 100 380 53 333 1.54e-132 389
MS.gene074189.t1 MTR_2g063907 65.125 281 98 0 99 379 53 333 2.24e-132 389
MS.gene074189.t1 MTR_7g081160 62.270 326 93 7 123 441 10 312 2.15e-121 365
MS.gene074189.t1 MTR_7g081170 79.375 160 29 2 159 317 86 242 7.30e-88 269
MS.gene074189.t1 MTR_2g063877 52.252 111 40 3 179 289 3 100 1.32e-30 115
MS.gene074189.t1 MTR_8g096190 32.867 286 147 10 91 356 308 568 5.31e-24 105
MS.gene074189.t1 MTR_8g096190 33.333 261 136 9 91 331 308 550 3.18e-22 100
MS.gene074189.t1 MTR_8g096190 34.783 230 121 8 91 309 308 519 5.66e-22 99.0
MS.gene074189.t1 MTR_1g048160 30.000 250 132 7 127 356 334 560 2.15e-19 91.7
MS.gene074189.t1 MTR_7g114100 29.600 250 126 10 127 354 172 393 7.47e-18 85.9
MS.gene074189.t1 MTR_7g114130 28.112 249 134 8 127 354 338 562 3.58e-17 84.7
MS.gene074189.t1 MTR_7g081180 69.355 62 17 1 329 388 1 62 6.14e-16 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene074189.t1 AT5G14420 72.414 348 81 3 58 404 67 400 3.53e-179 510
MS.gene074189.t1 AT5G14420 72.414 348 81 3 58 404 67 400 3.53e-179 510
MS.gene074189.t1 AT5G14420 72.414 348 81 3 58 404 67 400 3.53e-179 510
MS.gene074189.t1 AT5G14420 72.414 348 81 3 58 404 67 400 3.53e-179 510
MS.gene074189.t1 AT3G01650 74.164 329 65 3 56 379 95 408 8.66e-177 505
MS.gene074189.t1 AT3G01650 74.164 329 65 3 56 379 95 408 8.66e-177 505
MS.gene074189.t1 AT1G67800 70.370 324 91 1 95 418 61 379 1.29e-169 484
MS.gene074189.t1 AT1G67800 70.370 324 91 1 95 418 61 379 1.29e-169 484
MS.gene074189.t1 AT1G67800 70.370 324 91 1 95 418 61 379 1.29e-169 484
MS.gene074189.t1 AT1G67800 70.370 324 91 1 95 418 61 379 1.29e-169 484
MS.gene074189.t1 AT1G67800 70.370 324 91 1 95 418 81 399 1.79e-169 483
MS.gene074189.t1 AT1G67800 70.370 324 91 1 95 418 81 399 5.49e-169 484
MS.gene074189.t1 AT5G63970 67.293 266 87 0 96 361 6 271 5.06e-132 386
MS.gene074189.t1 AT5G63970 67.293 266 87 0 96 361 6 271 5.06e-132 386
MS.gene074189.t1 AT1G79380 62.544 283 106 0 92 374 44 326 2.18e-131 386
MS.gene074189.t1 AT1G24545 53.211 109 13 1 142 250 46 116 5.67e-29 112
MS.gene074189.t1 AT5G61910 30.627 271 136 11 111 354 1087 1332 2.16e-21 98.6
MS.gene074189.t1 AT5G07300 30.216 278 144 11 103 354 314 567 5.72e-21 96.3
MS.gene074189.t1 AT5G61900 30.627 271 136 11 111 354 319 564 7.95e-20 92.8
MS.gene074189.t1 AT5G61900 30.627 271 136 11 111 354 319 564 7.95e-20 92.8
MS.gene074189.t1 AT1G08860 29.299 314 163 12 77 369 302 577 1.06e-19 92.4

Find 129 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTTCTGCTTCTTCTTCT+TGG 0.074743 6.1:+5154813 MS.gene074189:CDS
CCTCAAATTATTATCCTCTT+TGG 0.233549 6.1:-5154765 None:intergenic
GAACAGGCAATATCCATTAT+TGG 0.248847 6.1:+5155637 MS.gene074189:CDS
GTTCCTAATATTAAACTTGC+AGG 0.276620 6.1:+5155905 MS.gene074189:CDS
GAGTCTTCCAATCTTATTCT+TGG 0.276878 6.1:+5155424 MS.gene074189:CDS
TTTGGTACTTCAAAACCTTA+TGG 0.290222 6.1:+5157159 MS.gene074189:CDS
ATACCTGCAAGTTTAATATT+AGG 0.295403 6.1:-5155908 None:intergenic
TCTTATGGTTCGGCGTCTTT+TGG 0.304213 6.1:+5157141 MS.gene074189:CDS
GATAACTTGATTCCTTGTTT+TGG 0.309163 6.1:+5155685 MS.gene074189:CDS
AATGGATATTGCCTGTTCAT+AGG 0.310815 6.1:-5155632 None:intergenic
CTTTGCACCCATTGTTGAAA+TGG 0.321773 6.1:+5156039 MS.gene074189:CDS
CCTCCTCCTCCGCAAAACTA+TGG 0.332154 6.1:+5154962 MS.gene074189:CDS
GGAAATTCCTTCTCAGTATA+AGG 0.336846 6.1:+5156936 MS.gene074189:CDS
ATTTCCTCTTTCGATCATAT+TGG 0.366765 6.1:+5156640 MS.gene074189:CDS
TTCATATCCGGACCCTCATT+CGG 0.368752 6.1:+5154838 MS.gene074189:CDS
TACTTCAAAACCTTATGGTT+TGG 0.369905 6.1:+5157164 MS.gene074189:CDS
AACAGGCAATATCCATTATT+GGG 0.375499 6.1:+5155638 MS.gene074189:CDS
ATTTGCTCTCGCAGCATTGA+TGG 0.382499 6.1:+5156915 MS.gene074189:CDS
GGAGGTCGGGCATCATAATA+TGG 0.386227 6.1:-5154941 None:intergenic
ATCAATTCCAAGAATAAGAT+TGG 0.395299 6.1:-5155431 None:intergenic
CCCTCATTCGGGTTACGGTC+AGG 0.396532 6.1:+5154850 MS.gene074189:CDS
TGTTGTGAATCATAAGTATA+AGG 0.399777 6.1:-5154884 None:intergenic
TTCTTCTTGGAATTCATATC+CGG 0.401443 6.1:+5154826 MS.gene074189:CDS
TGGAGGCCAATACCATGTTT+TGG 0.401526 6.1:+5156084 MS.gene074189:CDS
CCATTGCAAAATCTTTCATC+TGG 0.405804 6.1:-5155848 None:intergenic
TCATATCCGGACCCTCATTC+GGG 0.412709 6.1:+5154839 MS.gene074189:CDS
AAAGATATGGCCTTCGGATG+TGG 0.416356 6.1:+5157834 MS.gene074189:intron
GCCCTCCCAACACCCTCTTA+TGG 0.418141 6.1:+5157126 MS.gene074189:CDS
GGCCTTCGGATGTGGGCATC+AGG 0.422320 6.1:+5157842 MS.gene074189:CDS
GTTAATGGGGCTCCTGCAGA+TGG 0.427280 6.1:-5158235 None:intergenic
TTGCGGAGGAGGAGGAGGTC+GGG 0.429594 6.1:-5154954 None:intergenic
GTCATGGCCATTTCAACAAT+GGG 0.437074 6.1:-5156046 None:intergenic
AAGTTCTACTTATGAAAATC+AGG 0.441934 6.1:+5157305 MS.gene074189:CDS
AAAAGACGCCGAACCATAAG+AGG 0.442693 6.1:-5157139 None:intergenic
TGGTGTTGGAGATGGACCTT+GGG 0.447860 6.1:+5156664 MS.gene074189:CDS
GCAATAGAGCTTAATCTACT+TGG 0.451020 6.1:+5156961 MS.gene074189:CDS
TCTTTAGTTTGTGAATTTCA+CGG 0.452739 6.1:+5156849 MS.gene074189:intron
CCGGACCCTCATTCGGGTTA+CGG 0.455689 6.1:+5154845 MS.gene074189:CDS
GTTGGGAGGGCGACTCTAGT+TGG 0.462329 6.1:-5157114 None:intergenic
ACCTGTCCACTCGTTGCTCT+TGG 0.464264 6.1:-5155458 None:intergenic
TTCAAACGTGTCCCATCTGC+AGG 0.464621 6.1:+5158223 MS.gene074189:CDS
TTATCACCAAAACATGGTAT+TGG 0.464748 6.1:-5156090 None:intergenic
ATGGATATTGCCTGTTCATA+GGG 0.464896 6.1:-5155631 None:intergenic
TTGGTGTTGGAGATGGACCT+TGG 0.465147 6.1:+5156663 MS.gene074189:CDS
CATTCCTCCTTCACGAAAAG+AGG 0.466144 6.1:+5156888 MS.gene074189:CDS
ATTGCCTGTTCATAGGGATT+CGG 0.466672 6.1:-5155625 None:intergenic
ACGATCAGAGAAAGTTAGAT+AGG 0.468557 6.1:+5155023 MS.gene074189:CDS
TCGATCATATTGGTTGGTGT+TGG 0.471572 6.1:+5156650 MS.gene074189:CDS
CCCAACACCCTCTTATGGTT+CGG 0.473927 6.1:+5157131 MS.gene074189:CDS
CCGAACCATAAGAGGGTGTT+GGG 0.476496 6.1:-5157131 None:intergenic
ACAATGGGTGCAAAGGATGT+AGG 0.479320 6.1:-5156031 None:intergenic
CCTCATTCGGGTTACGGTCA+GGG 0.480031 6.1:+5154851 MS.gene074189:CDS
GGCACTCTGCCACTAGTTTG+AGG 0.484672 6.1:-5154992 None:intergenic
CTTTCTCTGATCGTCATGAC+GGG 0.486062 6.1:-5155014 None:intergenic
TCATAATATGGTTGATAAGA+AGG 0.493839 6.1:-5154929 None:intergenic
TGGTCCGAATCCCTATGAAC+AGG 0.495929 6.1:+5155621 MS.gene074189:CDS
ACTGAAGCTCTTGCACGTGC+AGG 0.500884 6.1:+5155397 MS.gene074189:CDS
GGTGATAATTGCAGATGGCC+AGG 0.501144 6.1:+5156105 MS.gene074189:CDS
CCGTAACCCGAATGAGGGTC+CGG 0.501311 6.1:-5154845 None:intergenic
CAACTTGTTTGACGACGTCT+TGG 0.503494 6.1:-5157260 None:intergenic
ACAGAAGATGCCAAACCATA+AGG 0.505095 6.1:-5157174 None:intergenic
CAATGGGTGCAAAGGATGTA+GGG 0.505612 6.1:-5156030 None:intergenic
TTTGCGGAGGAGGAGGAGGT+CGG 0.506457 6.1:-5154955 None:intergenic
TGGATGCCATTGTCGAGGCC+AGG 0.508765 6.1:+5156537 MS.gene074189:CDS
CCAACCAATATGATCGAAAG+AGG 0.511733 6.1:-5156644 None:intergenic
TGGTACGAAGGTGGGTAAGA+AGG 0.512902 6.1:-5157240 None:intergenic
ACATGGGAGGCTCAGTCCAC+AGG 0.514845 6.1:+5156502 MS.gene074189:CDS
AAGATATGGCCTTCGGATGT+GGG 0.516272 6.1:+5157835 MS.gene074189:intron
AAATTATCGAAGGCCCTAGC+TGG 0.518132 6.1:-5156716 None:intergenic
GACGTCGTCAAACAAGTTGT+TGG 0.522388 6.1:+5157264 MS.gene074189:CDS
CCTCTTTCGATCATATTGGT+TGG 0.522830 6.1:+5156644 MS.gene074189:CDS
TCCACGGTCTTCTGCTCCTG+TGG 0.524421 6.1:-5156518 None:intergenic
ACTTTCTCTGATCGTCATGA+CGG 0.526481 6.1:-5155015 None:intergenic
ATATTGGTTGGTGTTGGAGA+TGG 0.526977 6.1:+5156656 MS.gene074189:CDS
ACCAAGAGCAACGAGTGGAC+AGG 0.529829 6.1:+5155457 MS.gene074189:CDS
GGCCTCGACAATGGCATCCA+CGG 0.533160 6.1:-5156534 None:intergenic
CCAAAGAGGATAATAATTTG+AGG 0.533593 6.1:+5154765 MS.gene074189:CDS
AGAGGATAATAATTTGAGGC+GGG 0.534520 6.1:+5154769 MS.gene074189:CDS
TTGATGACAATATGCCAGCT+AGG 0.536974 6.1:+5156702 MS.gene074189:CDS
TGTCATGGCCATTTCAACAA+TGG 0.538180 6.1:-5156047 None:intergenic
CCCTGACCGTAACCCGAATG+AGG 0.541654 6.1:-5154851 None:intergenic
TAAGTAGAACTTGGGGCAGA+AGG 0.541739 6.1:-5157294 None:intergenic
AGCTTGCATCACATCGGGAA+TGG 0.543450 6.1:+5155601 MS.gene074189:CDS
ATCCATTATTGGGAAAACCT+TGG 0.543835 6.1:+5155648 MS.gene074189:CDS
GGCGACTCTAGTTGGAGCAT+TGG 0.544251 6.1:-5157106 None:intergenic
AGAAGTATTGACACTGAACA+TGG 0.549006 6.1:+5156485 MS.gene074189:CDS
CATTTCAACAATGGGTGCAA+AGG 0.552326 6.1:-5156038 None:intergenic
TGGACCTTGGGACATGATGA+AGG 0.552430 6.1:+5156676 MS.gene074189:CDS
GCCGAACCATAAGAGGGTGT+TGG 0.555869 6.1:-5157132 None:intergenic
ATCCTCATCAAATGCAGCCA+AGG 0.564689 6.1:-5155665 None:intergenic
CAATAGAGCTTAATCTACTT+GGG 0.567533 6.1:+5156962 MS.gene074189:CDS
ACGACGTCTTGGTACGAAGG+TGG 0.573377 6.1:-5157249 None:intergenic
ACCATAAGAGGGTGTTGGGA+GGG 0.576369 6.1:-5157127 None:intergenic
TTATCACCTGGCCTCGACAA+TGG 0.576692 6.1:-5156543 None:intergenic
ATTGCAGCCTTATACTGAGA+AGG 0.585676 6.1:-5156943 None:intergenic
AACCTTGGCTGCATTTGATG+AGG 0.588955 6.1:+5155663 MS.gene074189:CDS
GAATAAGATTGGAAGACTCA+AGG 0.592639 6.1:-5155420 None:intergenic
CGACGTCTTGGTACGAAGGT+GGG 0.594009 6.1:-5157248 None:intergenic
TGATGACAATATGCCAGCTA+GGG 0.594660 6.1:+5156703 MS.gene074189:CDS
AACTCCTTCATCATGTCCCA+AGG 0.595718 6.1:-5156680 None:intergenic
AACCATAAGAGGGTGTTGGG+AGG 0.605542 6.1:-5157128 None:intergenic
CCTGACCGTAACCCGAATGA+GGG 0.607945 6.1:-5154850 None:intergenic
TTGACGACGTCTTGGTACGA+AGG 0.611236 6.1:-5157252 None:intergenic
GTTTACCTGAAAATTATCGA+AGG 0.611679 6.1:-5156726 None:intergenic
AATCTTAAACAGTAGTCGGA+AGG 0.612928 6.1:+5157083 MS.gene074189:intron
TACCTGATGCCCACATCCGA+AGG 0.612987 6.1:-5157844 None:intergenic
TGACAGACATGTTGCGAATG+CGG 0.613284 6.1:+5158192 MS.gene074189:intron
GGATATGAGCCTCAAACTAG+TGG 0.613808 6.1:+5154983 MS.gene074189:CDS
TTAATGGGGCTCCTGCAGAT+GGG 0.618309 6.1:-5158234 None:intergenic
GACCGTGGATGCCATTGTCG+AGG 0.620761 6.1:+5156532 MS.gene074189:CDS
CCATCCCCGAATCCAAAACA+AGG 0.621252 6.1:-5155697 None:intergenic
AAGAGGATAATAATTTGAGG+CGG 0.623971 6.1:+5154768 MS.gene074189:CDS
TCAAAACTAGCAGCATGAGA+AGG 0.631711 6.1:-5157207 None:intergenic
CTGCAATTATCACCAAAACA+TGG 0.636469 6.1:-5156096 None:intergenic
ACTCTGCTCAACGATTGTCA+TGG 0.648042 6.1:-5156062 None:intergenic
GGTTGTTGTGACTCGTGCGT+AGG 0.650682 6.1:-5154908 None:intergenic
ACAATCGTTGAGCAGAGTGG+AGG 0.656204 6.1:+5156067 MS.gene074189:CDS
ATGACAATCGTTGAGCAGAG+TGG 0.657140 6.1:+5156064 MS.gene074189:CDS
AGTTAGATAGGAAATACTCA+AGG 0.660548 6.1:+5155035 MS.gene074189:CDS
TGTGAATCATAAGTATAAGG+AGG 0.665030 6.1:-5154881 None:intergenic
GAATTGAGTTGATTGATGGG+GGG 0.672957 6.1:+5154734 None:intergenic
AAAGACGCCGAACCATAAGA+GGG 0.674020 6.1:-5157138 None:intergenic
ATTTCACCAAGAGCAACGAG+TGG 0.683170 6.1:+5155452 MS.gene074189:CDS
TCCACAGGAGCAGAAGACCG+TGG 0.684259 6.1:+5156517 MS.gene074189:CDS
GAAGTATTGACACTGAACAT+GGG 0.689699 6.1:+5156486 MS.gene074189:CDS
GTATTGACACTGAACATGGG+AGG 0.694374 6.1:+5156489 MS.gene074189:CDS
TTTCTCTGATCGTCATGACG+GGG 0.719608 6.1:-5155013 None:intergenic
CATTCGGGTTACGGTCAGGG+CGG 0.722179 6.1:+5154854 MS.gene074189:CDS
TAATTACAACTCCATAGACG+AGG 0.735332 6.1:+5155066 MS.gene074189:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CATTTTATATGTTTAATATA+GGG + chr6.1:5157697-5157716 MS.gene074189:intron 10.0%
!! AAACTATAAATGTATAGATA+TGG - chr6.1:5155488-5155507 None:intergenic 15.0%
!! AATAGAGTATATAACTAAAT+TGG - chr6.1:5158104-5158123 None:intergenic 15.0%
!! ACTTGTATTTATAATTACAA+TGG + chr6.1:5156299-5156318 MS.gene074189:intron 15.0%
!! AGATAAAAACTATACAAAAT+CGG - chr6.1:5155110-5155129 None:intergenic 15.0%
!! CTATTTAATATATATCTGAA+AGG + chr6.1:5157598-5157617 MS.gene074189:intron 15.0%
!! CTTTCAGATATATATTAAAT+AGG - chr6.1:5157600-5157619 None:intergenic 15.0%
!!! ATTTGCATAATTTTATTGTT+CGG + chr6.1:5157662-5157681 MS.gene074189:intron 15.0%
!!! GCATTTTATATGTTTAATAT+AGG + chr6.1:5157696-5157715 MS.gene074189:intron 15.0%
!!! GTTAAAATGTTCTAAAATTT+TGG + chr6.1:5156787-5156806 MS.gene074189:intron 15.0%
!!! TTATTCATCTTTTTTCTTTT+GGG + chr6.1:5155296-5155315 MS.gene074189:intron 15.0%
!! AAAAGAGATAATAATACTGA+AGG - chr6.1:5157006-5157025 None:intergenic 20.0%
!! AGCAATAAAAAATACAAATC+TGG + chr6.1:5157935-5157954 MS.gene074189:intron 20.0%
!! ATGAATAGAAAGATAAATGA+AGG - chr6.1:5156207-5156226 None:intergenic 20.0%
!! TATTAATCTTAAACAGTAGT+CGG + chr6.1:5157079-5157098 MS.gene074189:intron 20.0%
!! TTATACTTATATCTCATTAC+AGG + chr6.1:5155372-5155391 MS.gene074189:intron 20.0%
!! TTATCTTTCTATTCATTCAA+AGG + chr6.1:5156211-5156230 MS.gene074189:intron 20.0%
!!! AATCTGGTTTATAAGTATTT+TGG + chr6.1:5157951-5157970 MS.gene074189:intron 20.0%
!!! AATTTGTTAATTTTGCTGTA+AGG - chr6.1:5157770-5157789 None:intergenic 20.0%
!!! CTTATTCATCTTTTTTCTTT+TGG + chr6.1:5155295-5155314 MS.gene074189:intron 20.0%
!!! GTATTGATATTTATGTGATT+TGG + chr6.1:5155208-5155227 MS.gene074189:intron 20.0%
!!! TATTGTAGAATTTTTGTTTG+TGG + chr6.1:5155749-5155768 MS.gene074189:intron 20.0%
!!! TTATAATTACAATGGTGTTA+CGG + chr6.1:5156307-5156326 MS.gene074189:intron 20.0%
!!! TTTGTATTTTTTATTGCTCA+TGG - chr6.1:5157933-5157952 None:intergenic 20.0%
! AAGTTCTACTTATGAAAATC+AGG + chr6.1:5157305-5157324 MS.gene074189:CDS 25.0%
! ATACCTGCAAGTTTAATATT+AGG - chr6.1:5155911-5155930 None:intergenic 25.0%
! ATCAATTCCAAGAATAAGAT+TGG - chr6.1:5155434-5155453 None:intergenic 25.0%
! ATTAAACATATAAAATGCGC+CGG - chr6.1:5157694-5157713 None:intergenic 25.0%
! ATTCATCATCTGAATTATTG+TGG + chr6.1:5156811-5156830 MS.gene074189:intron 25.0%
! ATTGTTTACCTCAGAAATAT+GGG - chr6.1:5158138-5158157 None:intergenic 25.0%
! CATTCAAAGGAAAAAGTAAT+TGG + chr6.1:5156224-5156243 MS.gene074189:intron 25.0%
! CTTAATTCTAACAATGTAGA+TGG + chr6.1:5156441-5156460 MS.gene074189:intron 25.0%
! TATTGTTTACCTCAGAAATA+TGG - chr6.1:5158139-5158158 None:intergenic 25.0%
! TATTGTTTAGGAATATTGAC+AGG + chr6.1:5156414-5156433 MS.gene074189:intron 25.0%
! TGTTGTGAATCATAAGTATA+AGG - chr6.1:5154887-5154906 None:intergenic 25.0%
! TTTAAAGACCAAAAAAGTCT+TGG + chr6.1:5158057-5158076 MS.gene074189:intron 25.0%
! TTTCATTGGTCAAACATATA+GGG - chr6.1:5157815-5157834 None:intergenic 25.0%
! TTTGACCAATGAAAAAGATA+TGG + chr6.1:5157821-5157840 MS.gene074189:intron 25.0%
!! ATTTTCATAAGTAGAACTTG+GGG - chr6.1:5157304-5157323 None:intergenic 25.0%
!! GATTTTCATAAGTAGAACTT+GGG - chr6.1:5157305-5157324 None:intergenic 25.0%
!! TGATTTTCATAAGTAGAACT+TGG - chr6.1:5157306-5157325 None:intergenic 25.0%
!! TTTTCATTGGTCAAACATAT+AGG - chr6.1:5157816-5157835 None:intergenic 25.0%
!!! AAATAACACCAAGACTTTTT+TGG - chr6.1:5158068-5158087 None:intergenic 25.0%
!!! AATACTTATGTTTTAACGTC+AGG + chr6.1:5156007-5156026 MS.gene074189:intron 25.0%
!!! AATAGGTCTGTGTTTTTTTA+GGG - chr6.1:5157907-5157926 None:intergenic 25.0%
!!! TCATAATATGGTTGATAAGA+AGG - chr6.1:5154932-5154951 None:intergenic 25.0%
!!! TCTTTAGTTTGTGAATTTCA+CGG + chr6.1:5156849-5156868 MS.gene074189:intron 25.0%
!!! TGGTGTTATTTATTTAGCAT+GGG + chr6.1:5158077-5158096 MS.gene074189:intron 25.0%
!!! TTGGTGTTATTTATTTAGCA+TGG + chr6.1:5158076-5158095 MS.gene074189:intron 25.0%
AAAGATAACCCTAAACATAC+TGG - chr6.1:5156146-5156165 None:intergenic 30.0%
AACAGGCAATATCCATTATT+GGG + chr6.1:5155638-5155657 MS.gene074189:CDS 30.0%
AAGAGGATAATAATTTGAGG+CGG + chr6.1:5154768-5154787 MS.gene074189:CDS 30.0%
AAGATAACCCTAAACATACT+GGG - chr6.1:5156145-5156164 None:intergenic 30.0%
AATGAAAAAGATATGGCCTT+CGG + chr6.1:5157828-5157847 MS.gene074189:intron 30.0%
AGACAAGATGTTCGTAAAAA+CGG - chr6.1:5156596-5156615 None:intergenic 30.0%
AGATGAATAAGTAGCATTGT+CGG - chr6.1:5155286-5155305 None:intergenic 30.0%
AGTTAGATAGGAAATACTCA+AGG + chr6.1:5155035-5155054 MS.gene074189:CDS 30.0%
ATTATGCAAATAATACAGCC+TGG - chr6.1:5157653-5157672 None:intergenic 30.0%
ATTCTTTACCCAGTATGTTT+AGG + chr6.1:5156134-5156153 MS.gene074189:intron 30.0%
ATTTCCTCTTTCGATCATAT+TGG + chr6.1:5156640-5156659 MS.gene074189:CDS 30.0%
CAATAGAGCTTAATCTACTT+GGG + chr6.1:5156962-5156981 MS.gene074189:CDS 30.0%
CCAAAGAGGATAATAATTTG+AGG + chr6.1:5154765-5154784 MS.gene074189:CDS 30.0%
CCTCAAATTATTATCCTCTT+TGG - chr6.1:5154768-5154787 None:intergenic 30.0%
CTAAAAAAACACAGACCTAT+TGG + chr6.1:5157906-5157925 MS.gene074189:intron 30.0%
GAAGAAAAAGATATCAGCAT+GGG - chr6.1:5155153-5155172 None:intergenic 30.0%
GGAATATTAGCAAGTAATGA+AGG + chr6.1:5156385-5156404 MS.gene074189:intron 30.0%
GTAATCTAATTAGTCAACTG+AGG - chr6.1:5157483-5157502 None:intergenic 30.0%
GTTCCTAATATTAAACTTGC+AGG + chr6.1:5155905-5155924 MS.gene074189:CDS 30.0%
GTTTACCTGAAAATTATCGA+AGG - chr6.1:5156729-5156748 None:intergenic 30.0%
TACTTCAAAACCTTATGGTT+TGG + chr6.1:5157164-5157183 MS.gene074189:CDS 30.0%
TAGGTTAGTGCTAATCAATT+GGG - chr6.1:5156348-5156367 None:intergenic 30.0%
TATAGGGATTGAGTATGAAA+TGG + chr6.1:5157713-5157732 MS.gene074189:intron 30.0%
TGAAGGAAGTTGTATTGTTT+AGG + chr6.1:5156402-5156421 MS.gene074189:intron 30.0%
TGTGAATCATAAGTATAAGG+AGG - chr6.1:5154884-5154903 None:intergenic 30.0%
TTATCACCAAAACATGGTAT+TGG - chr6.1:5156093-5156112 None:intergenic 30.0%
TTCTTCTTGGAATTCATATC+CGG + chr6.1:5154826-5154845 MS.gene074189:CDS 30.0%
TTCTTTACCCAGTATGTTTA+GGG + chr6.1:5156135-5156154 MS.gene074189:intron 30.0%
TTTGGTACTTCAAAACCTTA+TGG + chr6.1:5157159-5157178 MS.gene074189:CDS 30.0%
! AATTTCTTCCCATATTTCTG+AGG + chr6.1:5158127-5158146 MS.gene074189:intron 30.0%
! ATTCACATCTGAGATTCTTA+AGG + chr6.1:5158010-5158029 MS.gene074189:intron 30.0%
! GATATTTATGTGATTTGGCA+TGG + chr6.1:5155213-5155232 MS.gene074189:intron 30.0%
! GTGGTTTAAAATGTGCTAAT+GGG + chr6.1:5155768-5155787 MS.gene074189:intron 30.0%
! TCTGAGGTAAACAATAGATT+GGG + chr6.1:5158143-5158162 MS.gene074189:intron 30.0%
! TGTGGTTTAAAATGTGCTAA+TGG + chr6.1:5155767-5155786 MS.gene074189:intron 30.0%
!! CATTATGCTGCATAGTTTTA+TGG + chr6.1:5157565-5157584 MS.gene074189:intron 30.0%
!! GATAACTTGATTCCTTGTTT+TGG + chr6.1:5155685-5155704 MS.gene074189:CDS 30.0%
!! TGTAGAGCTTTAAATTCATC+AGG - chr6.1:5155175-5155194 None:intergenic 30.0%
!! TTCTGAGGTAAACAATAGAT+TGG + chr6.1:5158142-5158161 MS.gene074189:intron 30.0%
!!! ATAGGTCTGTGTTTTTTTAG+GGG - chr6.1:5157906-5157925 None:intergenic 30.0%
!!! CAATAGGTCTGTGTTTTTTT+AGG - chr6.1:5157908-5157927 None:intergenic 30.0%
!!! GATTTGAAGAAGTTTTGAGT+CGG + chr6.1:5155870-5155889 MS.gene074189:CDS 30.0%
!!! TTGATTCCTTGTTTTGGATT+CGG + chr6.1:5155691-5155710 MS.gene074189:CDS 30.0%
AATAATACAGCCTGGATGAA+TGG - chr6.1:5157645-5157664 None:intergenic 35.0%
AATCTTAAACAGTAGTCGGA+AGG + chr6.1:5157083-5157102 MS.gene074189:intron 35.0%
AATGGATATTGCCTGTTCAT+AGG - chr6.1:5155635-5155654 None:intergenic 35.0%
ACGATCAGAGAAAGTTAGAT+AGG + chr6.1:5155023-5155042 MS.gene074189:CDS 35.0%
AGAAAAAGCTTGCATCACAT+CGG + chr6.1:5155595-5155614 MS.gene074189:CDS 35.0%
AGACAGAGTATATGCTTTGT+TGG - chr6.1:5157510-5157529 None:intergenic 35.0%
AGCATATACTCTGTCTAATG+TGG + chr6.1:5157514-5157533 MS.gene074189:intron 35.0%
ATAAGAGCAACAAGACAAGT+AGG - chr6.1:5155940-5155959 None:intergenic 35.0%
ATCCATTATTGGGAAAACCT+TGG + chr6.1:5155648-5155667 MS.gene074189:CDS 35.0%
ATGGATATTGCCTGTTCATA+GGG - chr6.1:5155634-5155653 None:intergenic 35.0%
CAATTGATTAGCACTAACCT+AGG + chr6.1:5156347-5156366 MS.gene074189:intron 35.0%
CCATTGCAAAATCTTTCATC+TGG - chr6.1:5155851-5155870 None:intergenic 35.0%
CTAGGTTAGTGCTAATCAAT+TGG - chr6.1:5156349-5156368 None:intergenic 35.0%
CTGCAATTATCACCAAAACA+TGG - chr6.1:5156099-5156118 None:intergenic 35.0%
GAACAGGCAATATCCATTAT+TGG + chr6.1:5155637-5155656 MS.gene074189:CDS 35.0%
GAATAAGATTGGAAGACTCA+AGG - chr6.1:5155423-5155442 None:intergenic 35.0%
GAGTCTTCCAATCTTATTCT+TGG + chr6.1:5155424-5155443 MS.gene074189:CDS 35.0%
GCAATAGAGCTTAATCTACT+TGG + chr6.1:5156961-5156980 MS.gene074189:CDS 35.0%
GGAAATTCCTTCTCAGTATA+AGG + chr6.1:5156936-5156955 MS.gene074189:CDS 35.0%
GGAAGAAAAAGATATCAGCA+TGG - chr6.1:5155154-5155173 None:intergenic 35.0%
TAATTACAACTCCATAGACG+AGG + chr6.1:5155066-5155085 MS.gene074189:CDS 35.0%
TCAAGAGCAAATGTCCTAAT+TGG + chr6.1:5157879-5157898 MS.gene074189:intron 35.0%
TCTAATGTGGAGAGATGAAT+GGG + chr6.1:5157527-5157546 MS.gene074189:intron 35.0%
TGGGTAAAGAATAGAATACC+TGG - chr6.1:5156126-5156145 None:intergenic 35.0%
TTGATGCTGCCATAATATCA+CGG - chr6.1:5155799-5155818 None:intergenic 35.0%
TTTATTGCTCATGGACCAAT+AGG - chr6.1:5157924-5157943 None:intergenic 35.0%
! AGAGGATAATAATTTGAGGC+GGG + chr6.1:5154769-5154788 MS.gene074189:CDS 35.0%
! CCAGATGAAAGATTTTGCAA+TGG + chr6.1:5155848-5155867 MS.gene074189:CDS 35.0%
! TGCTTTTCCTTGTAGCTTTT+GGG + chr6.1:5157443-5157462 MS.gene074189:intron 35.0%
! TTTTATTGTTCGGTTGCTTC+CGG + chr6.1:5157672-5157691 MS.gene074189:intron 35.0%
!! ACAATGTAGATGGCTTTGTT+TGG + chr6.1:5156451-5156470 MS.gene074189:intron 35.0%
!! AGAAGTATTGACACTGAACA+TGG + chr6.1:5156485-5156504 MS.gene074189:CDS 35.0%
!! GAAGGCCATATCTTTTTCAT+TGG - chr6.1:5157829-5157848 None:intergenic 35.0%
!! GAAGTATTGACACTGAACAT+GGG + chr6.1:5156486-5156505 MS.gene074189:CDS 35.0%
!! GTTTTGGTGATAATTGCAGA+TGG + chr6.1:5156100-5156119 MS.gene074189:CDS 35.0%
!! TTGCTTTTCCTTGTAGCTTT+TGG + chr6.1:5157442-5157461 MS.gene074189:intron 35.0%
!!! AAGAAGTTTTGAGTCGGTAT+AGG + chr6.1:5155876-5155895 MS.gene074189:CDS 35.0%
!!! AGAAGTTTTGAGTCGGTATA+GGG + chr6.1:5155877-5155896 MS.gene074189:CDS 35.0%
!!! AGCATTTTTTACCTCGTCTA+TGG - chr6.1:5155080-5155099 None:intergenic 35.0%
!!! GTTTTTTTAGGGGACCAATT+AGG - chr6.1:5157896-5157915 None:intergenic 35.0%
!!! TGATTCCTTGTTTTGGATTC+GGG + chr6.1:5155692-5155711 MS.gene074189:CDS 35.0%
AACTTTGCAGCATTATCACC+TGG - chr6.1:5156558-5156577 None:intergenic 40.0%
ACAGAAGATGCCAAACCATA+AGG - chr6.1:5157177-5157196 None:intergenic 40.0%
ACTTTCTCTGATCGTCATGA+CGG - chr6.1:5155018-5155037 None:intergenic 40.0%
ATGAAGGAGAAAGCAAGAAG+CGG - chr6.1:5156191-5156210 None:intergenic 40.0%
ATTGCCTGTTCATAGGGATT+CGG - chr6.1:5155628-5155647 None:intergenic 40.0%
CATTTCAACAATGGGTGCAA+AGG - chr6.1:5156041-5156060 None:intergenic 40.0%
CCAACCAATATGATCGAAAG+AGG - chr6.1:5156647-5156666 None:intergenic 40.0%
CCTAGACTATACAGTTTCCT+AGG - chr6.1:5156367-5156386 None:intergenic 40.0%
CCTAGGAAACTGTATAGTCT+AGG + chr6.1:5156364-5156383 MS.gene074189:intron 40.0%
CCTCTTTCGATCATATTGGT+TGG + chr6.1:5156644-5156663 MS.gene074189:CDS 40.0%
CTTTGCACCCATTGTTGAAA+TGG + chr6.1:5156039-5156058 MS.gene074189:CDS 40.0%
GAAAAAGCTTGCATCACATC+GGG + chr6.1:5155596-5155615 MS.gene074189:CDS 40.0%
GTCATGGCCATTTCAACAAT+GGG - chr6.1:5156049-5156068 None:intergenic 40.0%
GTCTAATGTGGAGAGATGAA+TGG + chr6.1:5157526-5157545 MS.gene074189:intron 40.0%
TCAAAACTAGCAGCATGAGA+AGG - chr6.1:5157210-5157229 None:intergenic 40.0%
TGATGACAATATGCCAGCTA+GGG + chr6.1:5156703-5156722 MS.gene074189:CDS 40.0%
TGGGCATTACCGTGATATTA+TGG + chr6.1:5155787-5155806 MS.gene074189:intron 40.0%
TGTCATGGCCATTTCAACAA+TGG - chr6.1:5156050-5156069 None:intergenic 40.0%
TTGAGCAAATCAGAGAAGAC+TGG + chr6.1:5156164-5156183 MS.gene074189:intron 40.0%
! AGCCAACATCATTTTCAACC+AGG - chr6.1:5155239-5155258 None:intergenic 40.0%
! AGCCAAGGTTTTCCCAATAA+TGG - chr6.1:5155653-5155672 None:intergenic 40.0%
! ATTGCAGCCTTATACTGAGA+AGG - chr6.1:5156946-5156965 None:intergenic 40.0%
! GCTTTTCCTTGTAGCTTTTG+GGG + chr6.1:5157444-5157463 MS.gene074189:intron 40.0%
! TAGGGCCTTCGATAATTTTC+AGG + chr6.1:5156721-5156740 MS.gene074189:CDS 40.0%
! TCGATCATATTGGTTGGTGT+TGG + chr6.1:5156650-5156669 MS.gene074189:CDS 40.0%
! TTGATGACAATATGCCAGCT+AGG + chr6.1:5156702-5156721 MS.gene074189:CDS 40.0%
!! ATATTGGTTGGTGTTGGAGA+TGG + chr6.1:5156656-5156675 MS.gene074189:CDS 40.0%
!! GGCTCATATCCATAGTTTTG+CGG - chr6.1:5154974-5154993 None:intergenic 40.0%
!! TCATATCCATAGTTTTGCGG+AGG - chr6.1:5154971-5154990 None:intergenic 40.0%
!!! CAGCATGAGAAGGTTTTGAA+GGG - chr6.1:5157200-5157219 None:intergenic 40.0%
!!! GATTCCTTGTTTTGGATTCG+GGG + chr6.1:5155693-5155712 MS.gene074189:CDS 40.0%
AAAAGACGCCGAACCATAAG+AGG - chr6.1:5157142-5157161 None:intergenic 45.0%
AAAGACGCCGAACCATAAGA+GGG - chr6.1:5157141-5157160 None:intergenic 45.0%
AAAGATATGGCCTTCGGATG+TGG + chr6.1:5157834-5157853 MS.gene074189:intron 45.0%
AAATTATCGAAGGCCCTAGC+TGG - chr6.1:5156719-5156738 None:intergenic 45.0%
AACCTTGGCTGCATTTGATG+AGG + chr6.1:5155663-5155682 MS.gene074189:CDS 45.0%
AACTCCTTCATCATGTCCCA+AGG - chr6.1:5156683-5156702 None:intergenic 45.0%
AAGATATGGCCTTCGGATGT+GGG + chr6.1:5157835-5157854 MS.gene074189:intron 45.0%
AAGTAGCATTGTCGGTGAGA+AGG - chr6.1:5155278-5155297 None:intergenic 45.0%
ACAATGGGTGCAAAGGATGT+AGG - chr6.1:5156034-5156053 None:intergenic 45.0%
ACTCTGCTCAACGATTGTCA+TGG - chr6.1:5156065-5156084 None:intergenic 45.0%
AGATAGCCCCAAAAGCTACA+AGG - chr6.1:5157453-5157472 None:intergenic 45.0%
ATCCTCATCAAATGCAGCCA+AGG - chr6.1:5155668-5155687 None:intergenic 45.0%
ATGACAATCGTTGAGCAGAG+TGG + chr6.1:5156064-5156083 MS.gene074189:CDS 45.0%
ATTTCACCAAGAGCAACGAG+TGG + chr6.1:5155452-5155471 MS.gene074189:CDS 45.0%
CAATGGGTGCAAAGGATGTA+GGG - chr6.1:5156033-5156052 None:intergenic 45.0%
CATTCCTCCTTCACGAAAAG+AGG + chr6.1:5156888-5156907 MS.gene074189:CDS 45.0%
CTGCTTCTGCTTCTTCTTCT+TGG + chr6.1:5154813-5154832 MS.gene074189:CDS 45.0%
CTTTCTCTGATCGTCATGAC+GGG - chr6.1:5155017-5155036 None:intergenic 45.0%
GACGTCGTCAAACAAGTTGT+TGG + chr6.1:5157264-5157283 MS.gene074189:CDS 45.0%
GGATATGAGCCTCAAACTAG+TGG + chr6.1:5154983-5155002 MS.gene074189:CDS 45.0%
GGCCTGGTTGAAAATGATGT+TGG + chr6.1:5155234-5155253 MS.gene074189:intron 45.0%
TAAGTAGAACTTGGGGCAGA+AGG - chr6.1:5157297-5157316 None:intergenic 45.0%
TGACAGACATGTTGCGAATG+CGG + chr6.1:5158192-5158211 MS.gene074189:intron 45.0%
TTCATATCCGGACCCTCATT+CGG + chr6.1:5154838-5154857 MS.gene074189:CDS 45.0%
TTGTCAACTGCCATTCATCC+AGG + chr6.1:5157632-5157651 MS.gene074189:intron 45.0%
TTTCTCTGATCGTCATGACG+GGG - chr6.1:5155016-5155035 None:intergenic 45.0%
! AATGCTGCCTCTTTTCGTGA+AGG - chr6.1:5156898-5156917 None:intergenic 45.0%
! ATTTGCTCTCGCAGCATTGA+TGG + chr6.1:5156915-5156934 MS.gene074189:CDS 45.0%
! CAACTTGTTTGACGACGTCT+TGG - chr6.1:5157263-5157282 None:intergenic 45.0%
! GTATTGACACTGAACATGGG+AGG + chr6.1:5156489-5156508 MS.gene074189:CDS 45.0%
! TGGAGGCCAATACCATGTTT+TGG + chr6.1:5156084-5156103 MS.gene074189:CDS 45.0%
! TTATGTGATTTGGCATGGCC+TGG + chr6.1:5155218-5155237 MS.gene074189:intron 45.0%
!! GCAGCATGAGAAGGTTTTGA+AGG - chr6.1:5157201-5157220 None:intergenic 45.0%
!! TAGATGGCTTTGTTTGGTGC+AGG + chr6.1:5156457-5156476 MS.gene074189:intron 45.0%
!! TATCCATAGTTTTGCGGAGG+AGG - chr6.1:5154968-5154987 None:intergenic 45.0%
!! TCTTATGGTTCGGCGTCTTT+TGG + chr6.1:5157141-5157160 MS.gene074189:CDS 45.0%
!!! CTCATGCTGCTAGTTTTGAG+CGG + chr6.1:5157211-5157230 MS.gene074189:CDS 45.0%
ACAATCGTTGAGCAGAGTGG+AGG + chr6.1:5156067-5156086 MS.gene074189:CDS 50.0%
AGCTTGCATCACATCGGGAA+TGG + chr6.1:5155601-5155620 MS.gene074189:CDS 50.0%
CCATCCCCGAATCCAAAACA+AGG - chr6.1:5155700-5155719 None:intergenic 50.0%
CCATGTTCTCGATCTCGATC+GGG + chr6.1:5157361-5157380 MS.gene074189:intron 50.0%
CCCAACACCCTCTTATGGTT+CGG + chr6.1:5157131-5157150 MS.gene074189:CDS 50.0%
GCCATGTTCTCGATCTCGAT+CGG + chr6.1:5157360-5157379 MS.gene074189:intron 50.0%
GGAGGTCGGGCATCATAATA+TGG - chr6.1:5154944-5154963 None:intergenic 50.0%
GGTGATAATTGCAGATGGCC+AGG + chr6.1:5156105-5156124 MS.gene074189:CDS 50.0%
TCATATCCGGACCCTCATTC+GGG + chr6.1:5154839-5154858 MS.gene074189:CDS 50.0%
TGGACCTTGGGACATGATGA+AGG + chr6.1:5156676-5156695 MS.gene074189:CDS 50.0%
TGGTACGAAGGTGGGTAAGA+AGG - chr6.1:5157243-5157262 None:intergenic 50.0%
TGGTCCGAATCCCTATGAAC+AGG + chr6.1:5155621-5155640 MS.gene074189:CDS 50.0%
TTAATGGGGCTCCTGCAGAT+GGG - chr6.1:5158237-5158256 None:intergenic 50.0%
TTATCACCTGGCCTCGACAA+TGG - chr6.1:5156546-5156565 None:intergenic 50.0%
TTCAAACGTGTCCCATCTGC+AGG + chr6.1:5158223-5158242 MS.gene074189:CDS 50.0%
TTGACGACGTCTTGGTACGA+AGG - chr6.1:5157255-5157274 None:intergenic 50.0%
! TGGTGTTGGAGATGGACCTT+GGG + chr6.1:5156664-5156683 MS.gene074189:CDS 50.0%
!! AACCATAAGAGGGTGTTGGG+AGG - chr6.1:5157131-5157150 None:intergenic 50.0%
!! ACCATAAGAGGGTGTTGGGA+GGG - chr6.1:5157130-5157149 None:intergenic 50.0%
!! CCGAACCATAAGAGGGTGTT+GGG - chr6.1:5157134-5157153 None:intergenic 50.0%
!! CTGAGCTCGATGTTGCTTTC+AGG + chr6.1:5155556-5155575 MS.gene074189:intron 50.0%
!! TTGGTGTTGGAGATGGACCT+TGG + chr6.1:5156663-5156682 MS.gene074189:CDS 50.0%
!!! CCTTGTTTTGGATTCGGGGA+TGG + chr6.1:5155697-5155716 MS.gene074189:CDS 50.0%
ACCAAGAGCAACGAGTGGAC+AGG + chr6.1:5155457-5155476 MS.gene074189:CDS 55.0%
ACCTGTCCACTCGTTGCTCT+TGG - chr6.1:5155461-5155480 None:intergenic 55.0%
ACGACGTCTTGGTACGAAGG+TGG - chr6.1:5157252-5157271 None:intergenic 55.0%
ACTGAAGCTCTTGCACGTGC+AGG + chr6.1:5155397-5155416 MS.gene074189:CDS 55.0%
CCCGATCGAGATCGAGAACA+TGG - chr6.1:5157364-5157383 None:intergenic 55.0%
CCTCCTCCTCCGCAAAACTA+TGG + chr6.1:5154962-5154981 MS.gene074189:CDS 55.0%
CCTGACCGTAACCCGAATGA+GGG - chr6.1:5154853-5154872 None:intergenic 55.0%
CGACGTCTTGGTACGAAGGT+GGG - chr6.1:5157251-5157270 None:intergenic 55.0%
GAGCAACGAGTGGACAGGTT+AGG + chr6.1:5155462-5155481 MS.gene074189:intron 55.0%
GGCGACTCTAGTTGGAGCAT+TGG - chr6.1:5157109-5157128 None:intergenic 55.0%
GGGGGGTCAAAGTTCCAAAG+AGG + chr6.1:5154751-5154770 MS.gene074189:CDS 55.0%
GGTTGTTGTGACTCGTGCGT+AGG - chr6.1:5154911-5154930 None:intergenic 55.0%
GTTAATGGGGCTCCTGCAGA+TGG - chr6.1:5158238-5158257 None:intergenic 55.0%
TACCTGATGCCCACATCCGA+AGG - chr6.1:5157847-5157866 None:intergenic 55.0%
TCGATCTCGATCGGGCATGT+TGG + chr6.1:5157369-5157388 MS.gene074189:intron 55.0%
! CCTCATTCGGGTTACGGTCA+GGG + chr6.1:5154851-5154870 MS.gene074189:CDS 55.0%
! GCCGAACCATAAGAGGGTGT+TGG - chr6.1:5157135-5157154 None:intergenic 55.0%
! GCTGCCTCTTTTCGTGAAGG+AGG - chr6.1:5156895-5156914 None:intergenic 55.0%
! GGCACTCTGCCACTAGTTTG+AGG - chr6.1:5154995-5155014 None:intergenic 55.0%
!! CCATAGTTTTGCGGAGGAGG+AGG - chr6.1:5154965-5154984 None:intergenic 55.0%
!! TAGTTTTGCGGAGGAGGAGG+AGG - chr6.1:5154962-5154981 None:intergenic 55.0%
ACATGGGAGGCTCAGTCCAC+AGG + chr6.1:5156502-5156521 MS.gene074189:CDS 60.0%
CCCTGACCGTAACCCGAATG+AGG - chr6.1:5154854-5154873 None:intergenic 60.0%
CCGTAACCCGAATGAGGGTC+CGG - chr6.1:5154848-5154867 None:intergenic 60.0%
GACCGTGGATGCCATTGTCG+AGG + chr6.1:5156532-5156551 MS.gene074189:CDS 60.0%
GCCCTCCCAACACCCTCTTA+TGG + chr6.1:5157126-5157145 MS.gene074189:CDS 60.0%
GGCCTCGACAATGGCATCCA+CGG - chr6.1:5156537-5156556 None:intergenic 60.0%
GTTGGGAGGGCGACTCTAGT+TGG - chr6.1:5157117-5157136 None:intergenic 60.0%
TCCACAGGAGCAGAAGACCG+TGG + chr6.1:5156517-5156536 MS.gene074189:CDS 60.0%
TCCACGGTCTTCTGCTCCTG+TGG - chr6.1:5156521-5156540 None:intergenic 60.0%
TGGATGCCATTGTCGAGGCC+AGG + chr6.1:5156537-5156556 MS.gene074189:CDS 60.0%
TTTGCGGAGGAGGAGGAGGT+CGG - chr6.1:5154958-5154977 None:intergenic 60.0%
! CATTCGGGTTACGGTCAGGG+CGG + chr6.1:5154854-5154873 MS.gene074189:CDS 60.0%
! CCCTCATTCGGGTTACGGTC+AGG + chr6.1:5154850-5154869 MS.gene074189:CDS 60.0%
! CCGGACCCTCATTCGGGTTA+CGG + chr6.1:5154845-5154864 MS.gene074189:CDS 60.0%
GGCCTTCGGATGTGGGCATC+AGG + chr6.1:5157842-5157861 MS.gene074189:CDS 65.0%
TTGCGGAGGAGGAGGAGGTC+GGG - chr6.1:5154957-5154976 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 5154749 5158267 5154749 ID=MS.gene074189
chr6.1 mRNA 5154749 5158267 5154749 ID=MS.gene074189.t1;Parent=MS.gene074189
chr6.1 exon 5154749 5155087 5154749 ID=MS.gene074189.t1.exon1;Parent=MS.gene074189.t1
chr6.1 CDS 5154749 5155087 5154749 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5155394 5155478 5155394 ID=MS.gene074189.t1.exon2;Parent=MS.gene074189.t1
chr6.1 CDS 5155394 5155478 5155394 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5155578 5155718 5155578 ID=MS.gene074189.t1.exon3;Parent=MS.gene074189.t1
chr6.1 CDS 5155578 5155718 5155578 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5155813 5155926 5155813 ID=MS.gene074189.t1.exon4;Parent=MS.gene074189.t1
chr6.1 CDS 5155813 5155926 5155813 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5156029 5156126 5156029 ID=MS.gene074189.t1.exon5;Parent=MS.gene074189.t1
chr6.1 CDS 5156029 5156126 5156029 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5156479 5156558 5156479 ID=MS.gene074189.t1.exon6;Parent=MS.gene074189.t1
chr6.1 CDS 5156479 5156558 5156479 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5156637 5156742 5156637 ID=MS.gene074189.t1.exon7;Parent=MS.gene074189.t1
chr6.1 CDS 5156637 5156742 5156637 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5156856 5156983 5156856 ID=MS.gene074189.t1.exon8;Parent=MS.gene074189.t1
chr6.1 CDS 5156856 5156983 5156856 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5157095 5157326 5157095 ID=MS.gene074189.t1.exon9;Parent=MS.gene074189.t1
chr6.1 CDS 5157095 5157326 5157095 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5157838 5157863 5157838 ID=MS.gene074189.t1.exon10;Parent=MS.gene074189.t1
chr6.1 CDS 5157838 5157863 5157838 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
chr6.1 exon 5158198 5158267 5158198 ID=MS.gene074189.t1.exon11;Parent=MS.gene074189.t1
chr6.1 CDS 5158198 5158267 5158198 ID=cds.MS.gene074189.t1;Parent=MS.gene074189.t1
Gene Sequence

>MS.gene074189

ATGGGGGGTCAAAGTTCCAAAGAGGATAATAATTTGAGGCGGGATTCATTGCGTTCAAGTTCATCTGCTTCTGCTTCTTCTTCTTGGAATTCATATCCGGACCCTCATTCGGGTTACGGTCAGGGCGGTTATCCTCCTTATACTTATGATTCACAACAGCCTACGCACGAGTCACAACAACCTTCTTATCAACCATATTATGATGCCCGACCTCCTCCTCCTCCGCAAAACTATGGATATGAGCCTCAAACTAGTGGCAGAGTGCCCCGTCATGACGATCAGAGAAAGTTAGATAGGAAATACTCAAGGATTGCTGATAATTACAACTCCATAGACGAGGTAAAAAATGCTTTACATGCCGATTTTGTATAGTTTTTATCTTTAGCTTATCATGAAATCAACCCATGCTGATATCTTTTTCTTCCTGATGAATTTAAAGCTCTACATTTTTCTATTTTTGTATTGATATTTATGTGATTTGGCATGGCCTGGTTGAAAATGATGTTGGCTTACAATTTTCAAATTTCCTTCTCACCGACAATGCTACTTATTCATCTTTTTTCTTTTGGGAAAATTATTCGCTCTTAATCATTATTTCAATTCTTAACTTCTAGTATATTTTTTTATACTTATATCTCATTACAGGTGACTGAAGCTCTTGCACGTGCAGGCCTTGAGTCTTCCAATCTTATTCTTGGAATTGATTTCACCAAGAGCAACGAGTGGACAGGTTAGGCCATATCTATACATTTATAGTTTTCTAAGCTAAGATTTTAATTTATGCATTATACTGTTGTGAAATATATGCTGAGCTCGATGTTGCTTTCAGGAAAGCATTCATTTAATAGAAAAAGCTTGCATCACATCGGGAATGGTCCGAATCCCTATGAACAGGCAATATCCATTATTGGGAAAACCTTGGCTGCATTTGATGAGGATAACTTGATTCCTTGTTTTGGATTCGGGGATGGTATGTCTCTGAAAGTTCTCTCAACTCAGATATTGTAGAATTTTTGTTTGTGGTTTAAAATGTGCTAATGGGCATTACCGTGATATTATGGCAGCATCAACACATGATCAAGATGTCTTCAGTTTCTTTCCAGATGAAAGATTTTGCAATGGATTTGAAGAAGTTTTGAGTCGGTATAGGGAAATTGTTCCTAATATTAAACTTGCAGGTATATATCTCCTACTTGTCTTGTTGCTCTTATAGAAATTATATTTATTCATGTTATAGATATTGTAATACTGAGCTAAAAATACTTATGTTTTAACGTCAGGCCCTACATCCTTTGCACCCATTGTTGAAATGGCCATGACAATCGTTGAGCAGAGTGGAGGCCAATACCATGTTTTGGTGATAATTGCAGATGGCCAGGTATTCTATTCTTTACCCAGTATGTTTAGGGTTATCTTTGAGCAAATCAGAGAAGACTGGACCGCTTCTTGCTTTCTCCTTCATTTATCTTTCTATTCATTCAAAGGAAAAAGTAATTGGACAACAAAGATGAACAGAATTGAAATTTTTTGTGTCTAACTCAGATCATACAACTTGTATTTATAATTACAATGGTGTTACGGTAAATACATTGAATGCCCAATTGATTAGCACTAACCTAGGAAACTGTATAGTCTAGGAATATTAGCAAGTAATGAAGGAAGTTGTATTGTTTAGGAATATTGACAGGTTTACTTAATTCTAACAATGTAGATGGCTTTGTTTGGTGCAGGTAACAAGAAGTATTGACACTGAACATGGGAGGCTCAGTCCACAGGAGCAGAAGACCGTGGATGCCATTGTCGAGGCCAGGTGATAATGCTGCAAAGTTATTCTCAATATTGTTCCGTTTTTACGAACATCTTGTCTTACTTATCTACTTTGTCACAGTAAATTTCCTCTTTCGATCATATTGGTTGGTGTTGGAGATGGACCTTGGGACATGATGAAGGAGTTTGATGACAATATGCCAGCTAGGGCCTTCGATAATTTTCAGGTAAACAACGAAGAGCATGCAAAATATCTGATTAAATAACGCTTGTTAAAATGTTCTAAAATTTTGGAATTCATCATCTGAATTATTGTGGAATTCTCTTTGTGCTTCTTTAGTTTGTGAATTTCACGGAACTTATGTCGAAGAACATTCCTCCTTCACGAAAAGAGGCAGCATTTGCTCTCGCAGCATTGATGGAAATTCCTTCTCAGTATAAGGCTGCAATAGAGCTTAATCTACTTGGGTAAAATTTTGATTTGTTACCTTCAGTATTATTATCTCTTTTCTTCAAAAATATCTCAAGTTCATTTCTGACAAAAATTTGTTGATATTTGTGCTTATTAATCTTAAACAGTAGTCGGAAGGCCAATGCTCCAACTAGAGTCGCCCTCCCAACACCCTCTTATGGTTCGGCGTCTTTTGGTACTTCAAAACCTTATGGTTTGGCATCTTCTGTCCCTTCAAAACCTTCTCATGCTGCTAGTTTTGAGCGGAGTGCACCTTCTTACCCACCTTCGTACCAAGACGTCGTCAAACAAGTTGTTGGCACAGCTCCTTCTGCCCCAAGTTCTACTTATGAAAATCAGGTACAACTTACGAAGTGCTTCTAATGAAAACGTGCCATGTTCTCGATCTCGATCGGGCATGTTGGTTACAAACATGAATGTTACATGAAATTGCTCGAGTTATATGAATATATGTTTGCTTTTCCTTGTAGCTTTTGGGGCTATCTTGACATGCCTCAGTTGACTAATTAGATTACTTGTCCAACAAAGCATATACTCTGTCTAATGTGGAGAGATGAATGGGATCATTTACATGCTTCATTATGCTGCATAGTTTTATGGTCTCGTTTTCCTATTTAATATATATCTGAAAGGTACTTGTCTGTTTGTCAACTGCCATTCATCCAGGCTGTATTATTTGCATAATTTTATTGTTCGGTTGCTTCCGGCGCATTTTATATGTTTAATATAGGGATTGAGTATGAAATGGTTCATGTTATTAATTTATCATGAGAAGATTTCCTTACAGCAAAATTAACAAATTAAATTGTTCTTCTACAGCTTTGCCCTATATGTTTGACCAATGAAAAAGATATGGCCTTCGGATGTGGGCATCAGGTAAACACAATATTTTCAAGAGCAAATGTCCTAATTGGTCCCCTAAAAAAACACAGACCTATTGGTCCATGAGCAATAAAAAATACAAATCTGGTTTATAAGTATTTTGGATCAAAATATTTTTTTTTAAGATAATATTTTATTTTATTCACATCTGAGATTCTTAAGGATCAAATGAATATTTCTTTGTTTTTTTAAAGACCAAAAAAGTCTTGGTGTTATTTATTTAGCATGGGACCAATTTAGTTATATACTCTATTTTCAATTTCTTCCCATATTTCTGAGGTAAACAATAGATTGGGAGAATGCTTATGATTTCTTTGTTACATGACAGACATGTTGCGAATGCGGACAAGATCTTCAAACGTGTCCCATCTGCAGGAGCCCCATTAACACCAGAATAA

Protein sequence

>MS.gene074189.t1

MGGQSSKEDNNLRRDSLRSSSSASASSSWNSYPDPHSGYGQGGYPPYTYDSQQPTHESQQPSYQPYYDARPPPPPQNYGYEPQTSGRVPRHDDQRKLDRKYSRIADNYNSIDEVTEALARAGLESSNLILGIDFTKSNEWTGKHSFNRKSLHHIGNGPNPYEQAISIIGKTLAAFDEDNLIPCFGFGDASTHDQDVFSFFPDERFCNGFEEVLSRYREIVPNIKLAGPTSFAPIVEMAMTIVEQSGGQYHVLVIIADGQVTRSIDTEHGRLSPQEQKTVDAIVEASKFPLSIILVGVGDGPWDMMKEFDDNMPARAFDNFQFVNFTELMSKNIPPSRKEAAFALAALMEIPSQYKAAIELNLLGSRKANAPTRVALPTPSYGSASFGTSKPYGLASSVPSKPSHAASFERSAPSYPPSYQDVVKQVVGTAPSAPSSTYENQIWPSDVGIRHVANADKIFKRVPSAGAPLTPE