Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09945.t1 | XP_003611256.1 | 90.5 | 252 | 13 | 2 | 1 | 242 | 1 | 251 | 2.60E-99 | 371.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09945.t1 | G7KG86 | 90.5 | 252 | 13 | 2 | 1 | 242 | 1 | 251 | 1.9e-99 | 371.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene09945 | 0.826012 | 3.43E-54 | -1.69E-46 |
| MS.gene049351 | MS.gene09945 | 0.831631 | 1.50E-55 | -1.69E-46 |
| MS.gene049427 | MS.gene09945 | 0.824744 | 6.84E-54 | -1.69E-46 |
| MS.gene049760 | MS.gene09945 | 0.804619 | 1.98E-49 | -1.69E-46 |
| MS.gene049805 | MS.gene09945 | 0.810783 | 9.71E-51 | -1.69E-46 |
| MS.gene050076 | MS.gene09945 | 0.832443 | 9.43E-56 | -1.69E-46 |
| MS.gene050099 | MS.gene09945 | 0.820517 | 6.58E-53 | -1.69E-46 |
| MS.gene050301 | MS.gene09945 | 0.841924 | 3.54E-58 | -1.69E-46 |
| MS.gene050432 | MS.gene09945 | 0.830791 | 2.41E-55 | -1.69E-46 |
| MS.gene050529 | MS.gene09945 | 0.821128 | 4.76E-53 | -1.69E-46 |
| MS.gene050670 | MS.gene09945 | 0.842107 | 3.16E-58 | -1.69E-46 |
| MS.gene050767 | MS.gene09945 | 0.85906 | 5.37E-63 | -1.69E-46 |
| MS.gene050770 | MS.gene09945 | 0.861462 | 1.01E-63 | -1.69E-46 |
| MS.gene050783 | MS.gene09945 | 0.824516 | 7.74E-54 | -1.69E-46 |
| MS.gene050812 | MS.gene09945 | 0.850723 | 1.41E-60 | -1.69E-46 |
| MS.gene05101 | MS.gene09945 | 0.837229 | 5.88E-57 | -1.69E-46 |
| MS.gene05105 | MS.gene09945 | 0.860207 | 2.43E-63 | -1.69E-46 |
| MS.gene051387 | MS.gene09945 | 0.821265 | 4.43E-53 | -1.69E-46 |
| MS.gene051471 | MS.gene09945 | 0.858593 | 7.41E-63 | -1.69E-46 |
| MS.gene051582 | MS.gene09945 | 0.805094 | 1.58E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene09945 | 0.823132 | 1.63E-53 | -1.69E-46 |
| MS.gene052078 | MS.gene09945 | 0.864601 | 1.08E-64 | -1.69E-46 |
| MS.gene052188 | MS.gene09945 | 0.848602 | 5.52E-60 | -1.69E-46 |
| MS.gene052271 | MS.gene09945 | 0.801774 | 7.68E-49 | -1.69E-46 |
| MS.gene052290 | MS.gene09945 | 0.830605 | 2.67E-55 | -1.69E-46 |
| MS.gene052310 | MS.gene09945 | 0.867231 | 1.59E-65 | -1.69E-46 |
| MS.gene052326 | MS.gene09945 | 0.833345 | 5.63E-56 | -1.69E-46 |
| MS.gene052379 | MS.gene09945 | 0.813832 | 2.10E-51 | -1.69E-46 |
| MS.gene052421 | MS.gene09945 | 0.840038 | 1.11E-57 | -1.69E-46 |
| MS.gene052767 | MS.gene09945 | 0.840766 | 7.14E-58 | -1.69E-46 |
| MS.gene053009 | MS.gene09945 | 0.839515 | 1.51E-57 | -1.69E-46 |
| MS.gene053103 | MS.gene09945 | 0.83906 | 1.99E-57 | -1.69E-46 |
| MS.gene053104 | MS.gene09945 | 0.811056 | 8.47E-51 | -1.69E-46 |
| MS.gene053207 | MS.gene09945 | 0.80358 | 3.26E-49 | -1.69E-46 |
| MS.gene053209 | MS.gene09945 | 0.818966 | 1.49E-52 | -1.69E-46 |
| MS.gene053322 | MS.gene09945 | 0.852261 | 5.19E-61 | -1.69E-46 |
| MS.gene053632 | MS.gene09945 | 0.818223 | 2.19E-52 | -1.69E-46 |
| MS.gene053915 | MS.gene09945 | 0.81175 | 5.99E-51 | -1.69E-46 |
| MS.gene054123 | MS.gene09945 | 0.815472 | 9.09E-52 | -1.69E-46 |
| MS.gene054376 | MS.gene09945 | 0.855967 | 4.42E-62 | -1.69E-46 |
| MS.gene054802 | MS.gene09945 | 0.84922 | 3.72E-60 | -1.69E-46 |
| MS.gene054803 | MS.gene09945 | 0.850437 | 1.70E-60 | -1.69E-46 |
| MS.gene054804 | MS.gene09945 | 0.851579 | 8.10E-61 | -1.69E-46 |
| MS.gene05505 | MS.gene09945 | 0.827071 | 1.92E-54 | -1.69E-46 |
| MS.gene055116 | MS.gene09945 | 0.820746 | 5.83E-53 | -1.69E-46 |
| MS.gene055206 | MS.gene09945 | 0.800109 | 1.68E-48 | -1.69E-46 |
| MS.gene055254 | MS.gene09945 | 0.828463 | 8.87E-55 | -1.69E-46 |
| MS.gene055277 | MS.gene09945 | 0.831255 | 1.85E-55 | -1.69E-46 |
| MS.gene055397 | MS.gene09945 | 0.840739 | 7.25E-58 | -1.69E-46 |
| MS.gene055412 | MS.gene09945 | 0.832287 | 1.03E-55 | -1.69E-46 |
| MS.gene055422 | MS.gene09945 | 0.830583 | 2.71E-55 | -1.69E-46 |
| MS.gene055428 | MS.gene09945 | 0.817617 | 3.00E-52 | -1.69E-46 |
| MS.gene055499 | MS.gene09945 | 0.824469 | 7.94E-54 | -1.69E-46 |
| MS.gene05592 | MS.gene09945 | 0.819359 | 1.21E-52 | -1.69E-46 |
| MS.gene05602 | MS.gene09945 | 0.832665 | 8.30E-56 | -1.69E-46 |
| MS.gene056407 | MS.gene09945 | 0.852413 | 4.69E-61 | -1.69E-46 |
| MS.gene056449 | MS.gene09945 | 0.801116 | 1.05E-48 | -1.69E-46 |
| MS.gene056609 | MS.gene09945 | 0.819219 | 1.30E-52 | -1.69E-46 |
| MS.gene056612 | MS.gene09945 | 0.818771 | 1.65E-52 | -1.69E-46 |
| MS.gene056659 | MS.gene09945 | 0.813289 | 2.76E-51 | -1.69E-46 |
| MS.gene056719 | MS.gene09945 | 0.811263 | 7.64E-51 | -1.69E-46 |
| MS.gene056796 | MS.gene09945 | 0.819295 | 1.25E-52 | -1.69E-46 |
| MS.gene056903 | MS.gene09945 | 0.816704 | 4.82E-52 | -1.69E-46 |
| MS.gene057011 | MS.gene09945 | 0.845754 | 3.33E-59 | -1.69E-46 |
| MS.gene05702 | MS.gene09945 | 0.815859 | 7.45E-52 | -1.69E-46 |
| MS.gene057123 | MS.gene09945 | 0.82674 | 2.30E-54 | -1.69E-46 |
| MS.gene057124 | MS.gene09945 | 0.802434 | 5.62E-49 | -1.69E-46 |
| MS.gene057129 | MS.gene09945 | 0.850636 | 1.49E-60 | -1.69E-46 |
| MS.gene057146 | MS.gene09945 | 0.846021 | 2.82E-59 | -1.69E-46 |
| MS.gene057416 | MS.gene09945 | 0.818792 | 1.63E-52 | -1.69E-46 |
| MS.gene058019 | MS.gene09945 | 0.815325 | 9.80E-52 | -1.69E-46 |
| MS.gene058082 | MS.gene09945 | 0.832253 | 1.05E-55 | -1.69E-46 |
| MS.gene058233 | MS.gene09945 | 0.839165 | 1.87E-57 | -1.69E-46 |
| MS.gene058276 | MS.gene09945 | 0.82059 | 6.33E-53 | -1.69E-46 |
| MS.gene058293 | MS.gene09945 | 0.887063 | 1.98E-72 | -1.69E-46 |
| MS.gene058365 | MS.gene09945 | 0.838222 | 3.27E-57 | -1.69E-46 |
| MS.gene058660 | MS.gene09945 | 0.865741 | 4.74E-65 | -1.69E-46 |
| MS.gene05886 | MS.gene09945 | 0.80559 | 1.24E-49 | -1.69E-46 |
| MS.gene058993 | MS.gene09945 | 0.839614 | 1.43E-57 | -1.69E-46 |
| MS.gene059326 | MS.gene09945 | 0.809483 | 1.85E-50 | -1.69E-46 |
| MS.gene059536 | MS.gene09945 | 0.808026 | 3.79E-50 | -1.69E-46 |
| MS.gene059597 | MS.gene09945 | 0.816809 | 4.57E-52 | -1.69E-46 |
| MS.gene05959 | MS.gene09945 | 0.817653 | 2.95E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene09945 | 0.87026 | 1.67E-66 | -1.69E-46 |
| MS.gene059688 | MS.gene09945 | 0.848886 | 4.61E-60 | -1.69E-46 |
| MS.gene059692 | MS.gene09945 | 0.859756 | 3.32E-63 | -1.69E-46 |
| MS.gene059695 | MS.gene09945 | 0.863325 | 2.70E-64 | -1.69E-46 |
| MS.gene059894 | MS.gene09945 | 0.821508 | 3.89E-53 | -1.69E-46 |
| MS.gene059960 | MS.gene09945 | 0.88757 | 1.27E-72 | -1.69E-46 |
| MS.gene060407 | MS.gene09945 | 0.831063 | 2.06E-55 | -1.69E-46 |
| MS.gene060804 | MS.gene09945 | 0.801506 | 8.72E-49 | -1.69E-46 |
| MS.gene060818 | MS.gene09945 | 0.809948 | 1.47E-50 | -1.69E-46 |
| MS.gene06090 | MS.gene09945 | 0.83641 | 9.51E-57 | -1.69E-46 |
| MS.gene06092 | MS.gene09945 | 0.806355 | 8.57E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene09945 | 0.804435 | 2.16E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene09945 | 0.817861 | 2.65E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene09945 | 0.812087 | 5.06E-51 | -1.69E-46 |
| MS.gene061200 | MS.gene09945 | 0.856856 | 2.42E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09945.t1 | MTR_5g011990 | 93.254 | 252 | 6 | 2 | 1 | 242 | 1 | 251 | 4.34e-167 | 461 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene09945.t1 | AT1G62780 | 64.609 | 243 | 79 | 3 | 1 | 242 | 1 | 237 | 2.49e-105 | 304 |
Find 52 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCTTTGATGTCAAGATTT+TGG | 0.138015 | 5.2:-4467310 | None:intergenic |
| ATGAGGTCTTGTGGAGTATC+AGG | 0.256254 | 5.2:-4466474 | None:intergenic |
| TTTGCCTCTGCTCCATGATT+TGG | 0.296156 | 5.2:-4465689 | None:intergenic |
| CAAACCTGTTCCTTCTTGTA+TGG | 0.344252 | 5.2:-4466856 | None:intergenic |
| AGAAGTTTGAATGCTACTTC+TGG | 0.364092 | 5.2:+4465652 | MS.gene09945:CDS |
| TTGGCATTAAAATCCGAGTT+AGG | 0.370670 | 5.2:+4466677 | MS.gene09945:CDS |
| CCTAGCAAGGTGGCCAGTAT+TGG | 0.381900 | 5.2:-4465872 | None:intergenic |
| CTAGCAAGGTGGCCAGTATT+GGG | 0.384134 | 5.2:-4465871 | None:intergenic |
| CCAATACTGGCCACCTTGCT+AGG | 0.385665 | 5.2:+4465872 | MS.gene09945:CDS |
| GACGACGTTCTTTCTCTTCA+CGG | 0.402885 | 5.2:-4465957 | None:intergenic |
| GTACTAGGCCGGCCCAATAC+TGG | 0.406350 | 5.2:+4465859 | MS.gene09945:CDS |
| CTGAGCTTGCATCTTATCAT+AGG | 0.423174 | 5.2:-4467262 | None:intergenic |
| CGAGATTAATCGATCATTGT+TGG | 0.431377 | 5.2:+4467463 | MS.gene09945:CDS |
| TAAATGGCTACGCTTAACTT+TGG | 0.446560 | 5.2:+4465616 | None:intergenic |
| AAATCCACTATTGTGTGTAT+TGG | 0.451283 | 5.2:+4465709 | MS.gene09945:CDS |
| TTCAATACAGTTGCTGGAGT+TGG | 0.461932 | 5.2:+4467430 | MS.gene09945:intron |
| CTTACTTGACACTGAGGCTC+AGG | 0.483234 | 5.2:+4466503 | MS.gene09945:CDS |
| TGGACCAATACACACAATAG+TGG | 0.498779 | 5.2:-4465713 | None:intergenic |
| TTCGAACTAGAACCAAATCA+TGG | 0.502050 | 5.2:+4465677 | MS.gene09945:CDS |
| GAAGCAAGCTGCAGAATACA+TGG | 0.509642 | 5.2:+4467811 | MS.gene09945:intron |
| TAGGACCCAGAAGGTGTACT+AGG | 0.511032 | 5.2:+4465844 | MS.gene09945:intron |
| AAGGCCATACAAGAAGGAAC+AGG | 0.513579 | 5.2:+4466852 | MS.gene09945:CDS |
| TTCACGGACTTGACGCTCAA+AGG | 0.514787 | 5.2:-4465941 | None:intergenic |
| ACTATTGTGTGTATTGGTCC+AGG | 0.514965 | 5.2:+4465715 | MS.gene09945:CDS |
| GGAGGATAGATTGACTGAGC+TGG | 0.528319 | 5.2:+4466818 | MS.gene09945:CDS |
| AAGTGCACATGGTGCCAACC+AGG | 0.543322 | 5.2:+4467508 | MS.gene09945:CDS |
| CAAGGTGGCCAGTATTGGGC+CGG | 0.546539 | 5.2:-4465867 | None:intergenic |
| AGCATTCAAACTTCTTGTTG+TGG | 0.561221 | 5.2:-4465644 | None:intergenic |
| ACCCAGAAGGTGTACTAGGC+CGG | 0.561282 | 5.2:+4465848 | MS.gene09945:intron |
| AACCAAAATCTTGACATCAA+AGG | 0.566416 | 5.2:+4467308 | MS.gene09945:CDS |
| AAGTATTCAATGAGGTCTTG+TGG | 0.566777 | 5.2:-4466483 | None:intergenic |
| AAATCGAAGCTGTCCTAACT+CGG | 0.569095 | 5.2:-4466690 | None:intergenic |
| AATACATGGAGAAGCTCCGT+GGG | 0.575310 | 5.2:+4467825 | MS.gene09945:CDS |
| AGCTCAGCTCATAAAAGCCA+AGG | 0.578424 | 5.2:+4467278 | MS.gene09945:CDS |
| TGAGGTCTTGTGGAGTATCA+GGG | 0.585430 | 5.2:-4466473 | None:intergenic |
| TCTTAAACTCAAGCCTAGCA+AGG | 0.605985 | 5.2:-4465885 | None:intergenic |
| TTAGAGAAGGCCATACAAGA+AGG | 0.624872 | 5.2:+4466846 | MS.gene09945:CDS |
| AAGTAAACTTACATCACGAA+GGG | 0.626470 | 5.2:-4465983 | None:intergenic |
| AAAGTAAACTTACATCACGA+AGG | 0.630395 | 5.2:-4465984 | None:intergenic |
| ATGATTTCTGCAGCTTACGG+AGG | 0.630425 | 5.2:+4466800 | MS.gene09945:intron |
| TGAGCTGGAGGCTTTAGAGA+AGG | 0.633356 | 5.2:+4466833 | MS.gene09945:CDS |
| ATTTGCTGTTAACAAAACGC+AGG | 0.637369 | 5.2:+4466709 | MS.gene09945:CDS |
| AGAACCAAATCATGGAGCAG+AGG | 0.649829 | 5.2:+4465685 | MS.gene09945:CDS |
| GGATAGATTGACTGAGCTGG+AGG | 0.664651 | 5.2:+4466821 | MS.gene09945:CDS |
| GAATACATGGAGAAGCTCCG+TGG | 0.672335 | 5.2:+4467824 | MS.gene09945:CDS |
| AGATTGCAAGAATGAGACCA+CGG | 0.675769 | 5.2:+4466538 | MS.gene09945:CDS |
| TGTCAAGTAAGTATTCAATG+AGG | 0.689411 | 5.2:-4466491 | None:intergenic |
| TGTATTTGAGAACAGCCCCA+CGG | 0.699113 | 5.2:-4467841 | None:intergenic |
| TAAACTCAAGCCTAGCAAGG+TGG | 0.709876 | 5.2:-4465882 | None:intergenic |
| TGAATACTTACTTGACACTG+AGG | 0.714178 | 5.2:+4466497 | MS.gene09945:CDS |
| GAAAACATATCAAGTGCACA+TGG | 0.748043 | 5.2:+4467497 | MS.gene09945:CDS |
| ATACATGGAGAAGCTCCGTG+GGG | 0.765327 | 5.2:+4467826 | MS.gene09945:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATTTAGAGATTAAAT+TGG | + | chr5.2:4466315-4466334 | MS.gene09945:intron | 10.0% |
| !! | TTGATATATTAACAATTTGA+AGG | + | chr5.2:4467090-4467109 | MS.gene09945:intron | 15.0% |
| !! | ACTAAGCAAATGAAAAATAA+CGG | - | chr5.2:4466443-4466462 | None:intergenic | 20.0% |
| !! | CACTAGAATAATTTATTCAA+TGG | - | chr5.2:4466761-4466780 | None:intergenic | 20.0% |
| !! | TACAATTTCATGAACTAAAT+TGG | - | chr5.2:4466911-4466930 | None:intergenic | 20.0% |
| !!! | AACTTTTATGTTTCTAGTTT+CGG | - | chr5.2:4467678-4467697 | None:intergenic | 20.0% |
| !!! | AATTTAGTTCATGAAATTGT+AGG | + | chr5.2:4466910-4466929 | MS.gene09945:intron | 20.0% |
| !!! | ATTTAGTTCATGAAATTGTA+GGG | + | chr5.2:4466911-4466930 | MS.gene09945:intron | 20.0% |
| !!! | ATTTTCAATCAATAAAGAGT+TGG | - | chr5.2:4465805-4465824 | None:intergenic | 20.0% |
| !!! | GATTAGAGTAATAATCATTT+TGG | - | chr5.2:4466233-4466252 | None:intergenic | 20.0% |
| !!! | GTGAAATTTTCTTAATTTCA+AGG | - | chr5.2:4466952-4466971 | None:intergenic | 20.0% |
| !!! | TAGCCTTTATTATTTTATGA+CGG | + | chr5.2:4466403-4466422 | MS.gene09945:intron | 20.0% |
| !!! | TTCTTTATAGTTGATAGTAT+CGG | + | chr5.2:4467367-4467386 | MS.gene09945:intron | 20.0% |
| ! | AAATTGGCTATTTGATCAAT+TGG | + | chr5.2:4467147-4467166 | MS.gene09945:intron | 25.0% |
| ! | AATGAGTTAAAGATTATAGC+TGG | - | chr5.2:4467622-4467641 | None:intergenic | 25.0% |
| ! | AATTGATCAAATAGCCAATT+TGG | - | chr5.2:4467148-4467167 | None:intergenic | 25.0% |
| ! | ATTTAGAGATTAAATTGGAG+AGG | + | chr5.2:4466320-4466339 | MS.gene09945:intron | 25.0% |
| ! | CAGAAATCATCATTGTAAAA+AGG | - | chr5.2:4466790-4466809 | None:intergenic | 25.0% |
| ! | CATGTTCAGTAAATTAAATC+TGG | - | chr5.2:4467709-4467728 | None:intergenic | 25.0% |
| ! | GAACCGTCATAAAATAATAA+AGG | - | chr5.2:4466409-4466428 | None:intergenic | 25.0% |
| ! | GAATAAATTATTCTAGTGTC+TGG | + | chr5.2:4466763-4466782 | MS.gene09945:intron | 25.0% |
| ! | TTAATATATCAAAACAGTCC+TGG | - | chr5.2:4467082-4467101 | None:intergenic | 25.0% |
| ! | TTTAGAGATTAAATTGGAGA+GGG | + | chr5.2:4466321-4466340 | MS.gene09945:intron | 25.0% |
| ! | TTTGATACTTTCAAAGACTA+TGG | + | chr5.2:4466182-4466201 | MS.gene09945:intron | 25.0% |
| ! | TTTGATTGATTGATTGATGT+AGG | + | chr5.2:4465825-4465844 | MS.gene09945:intron | 25.0% |
| !! | ATTAAACGACGAATTCTTTT+TGG | + | chr5.2:4466658-4466677 | MS.gene09945:CDS | 25.0% |
| !! | CAGATTTAATTTACTGAACA+TGG | + | chr5.2:4467707-4467726 | MS.gene09945:intron | 25.0% |
| !! | CATTCAATTGATATTTTACC+TGG | - | chr5.2:4467529-4467548 | None:intergenic | 25.0% |
| !! | GTGTGTTTTCTTAGTAATTT+TGG | + | chr5.2:4466086-4466105 | MS.gene09945:intron | 25.0% |
| !! | TGATATGTTTTCATCAAGAA+GGG | - | chr5.2:4467489-4467508 | None:intergenic | 25.0% |
| !! | TGATTGAGAATTTTCAAATC+CGG | - | chr5.2:4466983-4467002 | None:intergenic | 25.0% |
| !! | TTGATATGTTTTCATCAAGA+AGG | - | chr5.2:4467490-4467509 | None:intergenic | 25.0% |
| AAAGTAAACTTACATCACGA+AGG | - | chr5.2:4465987-4466006 | None:intergenic | 30.0% | |
| AAATCCACTATTGTGTGTAT+TGG | + | chr5.2:4465709-4465728 | MS.gene09945:CDS | 30.0% | |
| AACCAAAATCTTGACATCAA+AGG | + | chr5.2:4467308-4467327 | MS.gene09945:CDS | 30.0% | |
| AAGTAAACTTACATCACGAA+GGG | - | chr5.2:4465986-4466005 | None:intergenic | 30.0% | |
| GAAAATTTCACAATGATCTC+CGG | + | chr5.2:4466961-4466980 | MS.gene09945:intron | 30.0% | |
| TGTCAAGTAAGTATTCAATG+AGG | - | chr5.2:4466494-4466513 | None:intergenic | 30.0% | |
| TTTATCTTCAATACAGTTGC+TGG | + | chr5.2:4467424-4467443 | MS.gene09945:intron | 30.0% | |
| TTTGAACATAACAGAACTTG+TGG | + | chr5.2:4467736-4467755 | MS.gene09945:intron | 30.0% | |
| ! | AAATATGCTGTACTCTAAGA+AGG | - | chr5.2:4467647-4467666 | None:intergenic | 30.0% |
| ! | AATATGCTGTACTCTAAGAA+GGG | - | chr5.2:4467646-4467665 | None:intergenic | 30.0% |
| ! | ACTTCTGTTCTAGTTAAACT+AGG | + | chr5.2:4467396-4467415 | MS.gene09945:intron | 30.0% |
| ! | ATCAGTGATTTTCAATATCC+AGG | + | chr5.2:4467061-4467080 | MS.gene09945:intron | 30.0% |
| ! | ATCCTTTGATGTCAAGATTT+TGG | - | chr5.2:4467313-4467332 | None:intergenic | 30.0% |
| ! | CAATTGATATTTTACCTGGT+TGG | - | chr5.2:4467525-4467544 | None:intergenic | 30.0% |
| ! | TTTTGGTCTCTAAATATTCG+AGG | - | chr5.2:4466216-4466235 | None:intergenic | 30.0% |
| !!! | GAAAACTTGTCATTTTAGCA+TGG | - | chr5.2:4466295-4466314 | None:intergenic | 30.0% |
| !!! | GGAATTGTCAATTTTGAAAC+AGG | + | chr5.2:4467580-4467599 | MS.gene09945:intron | 30.0% |
| !!! | TTGATGTCAAGATTTTGGTT+AGG | - | chr5.2:4467308-4467327 | None:intergenic | 30.0% |
| AAGGAACAGGTTTGTGAAAA+TGG | + | chr5.2:4466865-4466884 | MS.gene09945:intron | 35.0% | |
| AAGTATTCAATGAGGTCTTG+TGG | - | chr5.2:4466486-4466505 | None:intergenic | 35.0% | |
| AATTGGCGATTCACTCTATT+CGG | - | chr5.2:4466894-4466913 | None:intergenic | 35.0% | |
| AGATTATAGCTGGATGATAC+TGG | - | chr5.2:4467612-4467631 | None:intergenic | 35.0% | |
| AGCATTCAAACTTCTTGTTG+TGG | - | chr5.2:4465647-4465666 | None:intergenic | 35.0% | |
| AGTTAAGTTACCCAATCAAC+AGG | - | chr5.2:4465751-4465770 | None:intergenic | 35.0% | |
| ATGATGATTTCTGCAGCTTA+CGG | + | chr5.2:4466797-4466816 | MS.gene09945:intron | 35.0% | |
| ATTTGGTCCTTGAAATGGTA+CGG | - | chr5.2:4467131-4467150 | None:intergenic | 35.0% | |
| CGAGATTAATCGATCATTGT+TGG | + | chr5.2:4467463-4467482 | MS.gene09945:CDS | 35.0% | |
| GAAAACATATCAAGTGCACA+TGG | + | chr5.2:4467497-4467516 | MS.gene09945:CDS | 35.0% | |
| TACCATTTCAAGGACCAAAT+TGG | + | chr5.2:4467131-4467150 | MS.gene09945:intron | 35.0% | |
| TGAATACTTACTTGACACTG+AGG | + | chr5.2:4466497-4466516 | MS.gene09945:CDS | 35.0% | |
| TTCGAACTAGAACCAAATCA+TGG | + | chr5.2:4465677-4465696 | MS.gene09945:CDS | 35.0% | |
| TTGGCATTAAAATCCGAGTT+AGG | + | chr5.2:4466677-4466696 | MS.gene09945:CDS | 35.0% | |
| ! | AGAAGTTTGAATGCTACTTC+TGG | + | chr5.2:4465652-4465671 | MS.gene09945:CDS | 35.0% |
| ! | AGGTATCTGACTCTTTTTGT+TGG | + | chr5.2:4466729-4466748 | MS.gene09945:intron | 35.0% |
| !! | ATTTGCTGTTAACAAAACGC+AGG | + | chr5.2:4466709-4466728 | MS.gene09945:CDS | 35.0% |
| !!! | AACTTGTCATTTTAGCATGG+TGG | - | chr5.2:4466292-4466311 | None:intergenic | 35.0% |
| !!! | GATTTTGGTTAGGTTTTCCT+TGG | - | chr5.2:4467298-4467317 | None:intergenic | 35.0% |
| AAATCGAAGCTGTCCTAACT+CGG | - | chr5.2:4466693-4466712 | None:intergenic | 40.0% | |
| ACAATTCCACACACAGATTC+TGG | - | chr5.2:4467568-4467587 | None:intergenic | 40.0% | |
| AGATTGCAAGAATGAGACCA+CGG | + | chr5.2:4466538-4466557 | MS.gene09945:CDS | 40.0% | |
| AGCCAATTTGGTCCTTGAAA+TGG | - | chr5.2:4467136-4467155 | None:intergenic | 40.0% | |
| AGGCATCTGCATAAGCAAAT+GGG | - | chr5.2:4467245-4467264 | None:intergenic | 40.0% | |
| CAAACCTGTTCCTTCTTGTA+TGG | - | chr5.2:4466859-4466878 | None:intergenic | 40.0% | |
| CACACACAGATTCTGGTAAT+CGG | - | chr5.2:4467561-4467580 | None:intergenic | 40.0% | |
| CTGAGCTTGCATCTTATCAT+AGG | - | chr5.2:4467265-4467284 | None:intergenic | 40.0% | |
| TAGGCATCTGCATAAGCAAA+TGG | - | chr5.2:4467246-4467265 | None:intergenic | 40.0% | |
| TCTTAAACTCAAGCCTAGCA+AGG | - | chr5.2:4465888-4465907 | None:intergenic | 40.0% | |
| TGGACCAATACACACAATAG+TGG | - | chr5.2:4465716-4465735 | None:intergenic | 40.0% | |
| TTAGAGAAGGCCATACAAGA+AGG | + | chr5.2:4466846-4466865 | MS.gene09945:CDS | 40.0% | |
| TTCAATACAGTTGCTGGAGT+TGG | + | chr5.2:4467430-4467449 | MS.gene09945:intron | 40.0% | |
| TTCATGAAATTGTAGGGTGC+TGG | + | chr5.2:4466917-4466936 | MS.gene09945:intron | 40.0% | |
| ! | ACTATTGTGTGTATTGGTCC+AGG | + | chr5.2:4465715-4465734 | MS.gene09945:CDS | 40.0% |
| ! | TCCTATTGGTCCTGTTGATT+GGG | + | chr5.2:4465738-4465757 | MS.gene09945:intron | 40.0% |
| !! | TTGAAAAGTACTACGAACCG+TGG | - | chr5.2:4466558-4466577 | None:intergenic | 40.0% |
| AAGGCCATACAAGAAGGAAC+AGG | + | chr5.2:4466852-4466871 | MS.gene09945:CDS | 45.0% | |
| AATACATGGAGAAGCTCCGT+GGG | + | chr5.2:4467825-4467844 | MS.gene09945:CDS | 45.0% | |
| ACCCAATCAACAGGACCAAT+AGG | - | chr5.2:4465742-4465761 | None:intergenic | 45.0% | |
| AGAACCAAATCATGGAGCAG+AGG | + | chr5.2:4465685-4465704 | MS.gene09945:CDS | 45.0% | |
| AGCTCAGCTCATAAAAGCCA+AGG | + | chr5.2:4467278-4467297 | MS.gene09945:CDS | 45.0% | |
| ATGATTTCTGCAGCTTACGG+AGG | + | chr5.2:4466800-4466819 | MS.gene09945:intron | 45.0% | |
| ATGCAAGCTTACTCCTTGCT+CGG | + | chr5.2:4467214-4467233 | MS.gene09945:intron | 45.0% | |
| CGATTACCAGAATCTGTGTG+TGG | + | chr5.2:4467559-4467578 | MS.gene09945:intron | 45.0% | |
| GAAGCAAGCTGCAGAATACA+TGG | + | chr5.2:4467811-4467830 | MS.gene09945:intron | 45.0% | |
| GACGACGTTCTTTCTCTTCA+CGG | - | chr5.2:4465960-4465979 | None:intergenic | 45.0% | |
| GTCCTATTGGTCCTGTTGAT+TGG | + | chr5.2:4465737-4465756 | MS.gene09945:intron | 45.0% | |
| TAAACTCAAGCCTAGCAAGG+TGG | - | chr5.2:4465885-4465904 | None:intergenic | 45.0% | |
| TGATTGATGTAGGACCCAGA+AGG | + | chr5.2:4465835-4465854 | MS.gene09945:intron | 45.0% | |
| TGTATTTGAGAACAGCCCCA+CGG | - | chr5.2:4467844-4467863 | None:intergenic | 45.0% | |
| TTTGCCTCTGCTCCATGATT+TGG | - | chr5.2:4465692-4465711 | None:intergenic | 45.0% | |
| ! | ATGAGGTCTTGTGGAGTATC+AGG | - | chr5.2:4466477-4466496 | None:intergenic | 45.0% |
| ! | TGAGGTCTTGTGGAGTATCA+GGG | - | chr5.2:4466476-4466495 | None:intergenic | 45.0% |
| ! | TGTATTGGTCCAGGTCCTAT+TGG | + | chr5.2:4465724-4465743 | MS.gene09945:intron | 45.0% |
| ATACATGGAGAAGCTCCGTG+GGG | + | chr5.2:4467826-4467845 | MS.gene09945:CDS | 50.0% | |
| CTAGCAAGGTGGCCAGTATT+GGG | - | chr5.2:4465874-4465893 | None:intergenic | 50.0% | |
| CTTACTTGACACTGAGGCTC+AGG | + | chr5.2:4466503-4466522 | MS.gene09945:CDS | 50.0% | |
| GAATACATGGAGAAGCTCCG+TGG | + | chr5.2:4467824-4467843 | MS.gene09945:CDS | 50.0% | |
| GGAGGATAGATTGACTGAGC+TGG | + | chr5.2:4466818-4466837 | MS.gene09945:CDS | 50.0% | |
| GGATAGATTGACTGAGCTGG+AGG | + | chr5.2:4466821-4466840 | MS.gene09945:CDS | 50.0% | |
| GTCGACACCGTACCATTTCA+AGG | + | chr5.2:4467121-4467140 | MS.gene09945:intron | 50.0% | |
| TCAACAGGACCAATAGGACC+TGG | - | chr5.2:4465736-4465755 | None:intergenic | 50.0% | |
| TTCACGGACTTGACGCTCAA+AGG | - | chr5.2:4465944-4465963 | None:intergenic | 50.0% | |
| ! | TAGGACCCAGAAGGTGTACT+AGG | + | chr5.2:4465844-4465863 | MS.gene09945:intron | 50.0% |
| ! | TGCAGCTTGCTTCTGCAACA+AGG | - | chr5.2:4467804-4467823 | None:intergenic | 50.0% |
| ! | TTGGAGAGGGCGTGAAACTT+TGG | + | chr5.2:4466334-4466353 | MS.gene09945:intron | 50.0% |
| !! | TGAGCTGGAGGCTTTAGAGA+AGG | + | chr5.2:4466833-4466852 | MS.gene09945:CDS | 50.0% |
| CAAATGGGAGCAACCGAGCA+AGG | - | chr5.2:4467230-4467249 | None:intergenic | 55.0% | |
| CCAATACTGGCCACCTTGCT+AGG | + | chr5.2:4465872-4465891 | MS.gene09945:CDS | 55.0% | |
| CCTAGCAAGGTGGCCAGTAT+TGG | - | chr5.2:4465875-4465894 | None:intergenic | 55.0% | |
| ! | AAGTGCACATGGTGCCAACC+AGG | + | chr5.2:4467508-4467527 | MS.gene09945:CDS | 55.0% |
| ! | ACCCAGAAGGTGTACTAGGC+CGG | + | chr5.2:4465848-4465867 | MS.gene09945:intron | 55.0% |
| GCCGGCCTAGTACACCTTCT+GGG | - | chr5.2:4465852-4465871 | None:intergenic | 60.0% | |
| GTACTAGGCCGGCCCAATAC+TGG | + | chr5.2:4465859-4465878 | MS.gene09945:CDS | 60.0% | |
| ! | CAAGGTGGCCAGTATTGGGC+CGG | - | chr5.2:4465870-4465889 | None:intergenic | 60.0% |
| GGCCGGCCTAGTACACCTTC+TGG | - | chr5.2:4465853-4465872 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 4465619 | 4467874 | 4465619 | ID=MS.gene09945 |
| chr5.2 | mRNA | 4465619 | 4467874 | 4465619 | ID=MS.gene09945.t1;Parent=MS.gene09945 |
| chr5.2 | exon | 4465619 | 4465736 | 4465619 | ID=MS.gene09945.t1.exon1;Parent=MS.gene09945.t1 |
| chr5.2 | CDS | 4465619 | 4465736 | 4465619 | ID=cds.MS.gene09945.t1;Parent=MS.gene09945.t1 |
| chr5.2 | exon | 4465854 | 4465993 | 4465854 | ID=MS.gene09945.t1.exon2;Parent=MS.gene09945.t1 |
| chr5.2 | CDS | 4465854 | 4465993 | 4465854 | ID=cds.MS.gene09945.t1;Parent=MS.gene09945.t1 |
| chr5.2 | exon | 4466462 | 4466559 | 4466462 | ID=MS.gene09945.t1.exon3;Parent=MS.gene09945.t1 |
| chr5.2 | CDS | 4466462 | 4466559 | 4466462 | ID=cds.MS.gene09945.t1;Parent=MS.gene09945.t1 |
| chr5.2 | exon | 4466658 | 4466730 | 4466658 | ID=MS.gene09945.t1.exon4;Parent=MS.gene09945.t1 |
| chr5.2 | CDS | 4466658 | 4466730 | 4466658 | ID=cds.MS.gene09945.t1;Parent=MS.gene09945.t1 |
| chr5.2 | exon | 4466813 | 4466873 | 4466813 | ID=MS.gene09945.t1.exon5;Parent=MS.gene09945.t1 |
| chr5.2 | CDS | 4466813 | 4466873 | 4466813 | ID=cds.MS.gene09945.t1;Parent=MS.gene09945.t1 |
| chr5.2 | exon | 4467259 | 4467344 | 4467259 | ID=MS.gene09945.t1.exon6;Parent=MS.gene09945.t1 |
| chr5.2 | CDS | 4467259 | 4467344 | 4467259 | ID=cds.MS.gene09945.t1;Parent=MS.gene09945.t1 |
| chr5.2 | exon | 4467440 | 4467529 | 4467440 | ID=MS.gene09945.t1.exon7;Parent=MS.gene09945.t1 |
| chr5.2 | CDS | 4467440 | 4467529 | 4467440 | ID=cds.MS.gene09945.t1;Parent=MS.gene09945.t1 |
| chr5.2 | exon | 4467812 | 4467874 | 4467812 | ID=MS.gene09945.t1.exon8;Parent=MS.gene09945.t1 |
| chr5.2 | CDS | 4467812 | 4467874 | 4467812 | ID=cds.MS.gene09945.t1;Parent=MS.gene09945.t1 |
| Gene Sequence |
| Protein sequence |
