Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20550.t1 | XP_004489359.1 | 89.2 | 324 | 33 | 2 | 1 | 322 | 1 | 324 | 4.90E-138 | 500.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20550.t1 | O34331 | 29.5 | 190 | 124 | 3 | 114 | 303 | 1 | 180 | 2.2e-14 | 81.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20550.t1 | A0A1S2XJY0 | 89.2 | 324 | 33 | 2 | 1 | 322 | 1 | 324 | 3.5e-138 | 500.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene20550 | 0.832787 | 7.74E-56 | -1.69E-46 |
| MS.gene049217 | MS.gene20550 | 0.851754 | 7.22E-61 | -1.69E-46 |
| MS.gene049222 | MS.gene20550 | 0.829632 | 4.62E-55 | -1.69E-46 |
| MS.gene049285 | MS.gene20550 | 0.835675 | 1.46E-56 | -1.69E-46 |
| MS.gene049320 | MS.gene20550 | 0.813407 | 2.60E-51 | -1.69E-46 |
| MS.gene04939 | MS.gene20550 | 0.804197 | 2.42E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene20550 | 0.834501 | 2.89E-56 | -1.69E-46 |
| MS.gene049609 | MS.gene20550 | 0.80021 | 1.60E-48 | -1.69E-46 |
| MS.gene049633 | MS.gene20550 | 0.837991 | 3.75E-57 | -1.69E-46 |
| MS.gene050163 | MS.gene20550 | 0.855113 | 7.84E-62 | -1.69E-46 |
| MS.gene050165 | MS.gene20550 | 0.857092 | 2.07E-62 | -1.69E-46 |
| MS.gene050333 | MS.gene20550 | 0.817452 | 3.27E-52 | -1.69E-46 |
| MS.gene050444 | MS.gene20550 | 0.80238 | 5.77E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene20550 | 0.821783 | 3.36E-53 | -1.69E-46 |
| MS.gene050518 | MS.gene20550 | 0.827753 | 1.31E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene20550 | 0.810875 | 9.27E-51 | -1.69E-46 |
| MS.gene050612 | MS.gene20550 | 0.841514 | 4.54E-58 | -1.69E-46 |
| MS.gene050675 | MS.gene20550 | 0.836254 | 1.04E-56 | -1.69E-46 |
| MS.gene050699 | MS.gene20550 | 0.8254 | 4.79E-54 | -1.69E-46 |
| MS.gene05080 | MS.gene20550 | 0.806175 | 9.35E-50 | -1.69E-46 |
| MS.gene050986 | MS.gene20550 | 0.823565 | 1.29E-53 | -1.69E-46 |
| MS.gene05100 | MS.gene20550 | 0.804296 | 2.31E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene20550 | 0.816124 | 6.50E-52 | -1.69E-46 |
| MS.gene051810 | MS.gene20550 | 0.820327 | 7.27E-53 | -1.69E-46 |
| MS.gene051858 | MS.gene20550 | 0.801734 | 7.83E-49 | -1.69E-46 |
| MS.gene051949 | MS.gene20550 | 0.811026 | 8.60E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene20550 | 0.809552 | 1.79E-50 | -1.69E-46 |
| MS.gene052379 | MS.gene20550 | 0.817578 | 3.07E-52 | -1.69E-46 |
| MS.gene052870 | MS.gene20550 | 0.81183 | 5.75E-51 | -1.69E-46 |
| MS.gene052872 | MS.gene20550 | 0.829696 | 4.46E-55 | -1.69E-46 |
| MS.gene053203 | MS.gene20550 | 0.824252 | 8.93E-54 | -1.69E-46 |
| MS.gene053213 | MS.gene20550 | 0.802421 | 5.65E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene20550 | 0.806993 | 6.28E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene20550 | 0.832633 | 8.46E-56 | -1.69E-46 |
| MS.gene05470 | MS.gene20550 | 0.830937 | 2.22E-55 | -1.69E-46 |
| MS.gene054954 | MS.gene20550 | 0.830077 | 3.60E-55 | -1.69E-46 |
| MS.gene055206 | MS.gene20550 | 0.819666 | 1.03E-52 | -1.69E-46 |
| MS.gene055362 | MS.gene20550 | 0.813985 | 1.94E-51 | -1.69E-46 |
| MS.gene055397 | MS.gene20550 | 0.803005 | 4.29E-49 | -1.69E-46 |
| MS.gene055502 | MS.gene20550 | 0.823666 | 1.22E-53 | -1.69E-46 |
| MS.gene055577 | MS.gene20550 | 0.836682 | 8.11E-57 | -1.69E-46 |
| MS.gene055748 | MS.gene20550 | 0.821097 | 4.84E-53 | -1.69E-46 |
| MS.gene055751 | MS.gene20550 | 0.818571 | 1.83E-52 | -1.69E-46 |
| MS.gene05589 | MS.gene20550 | 0.804597 | 2.00E-49 | -1.69E-46 |
| MS.gene055941 | MS.gene20550 | 0.803844 | 2.87E-49 | -1.69E-46 |
| MS.gene056083 | MS.gene20550 | 0.817109 | 3.91E-52 | -1.69E-46 |
| MS.gene056549 | MS.gene20550 | 0.826485 | 2.64E-54 | -1.69E-46 |
| MS.gene056657 | MS.gene20550 | 0.821619 | 3.67E-53 | -1.69E-46 |
| MS.gene056692 | MS.gene20550 | 0.834631 | 2.68E-56 | -1.69E-46 |
| MS.gene056856 | MS.gene20550 | -0.804761 | 1.85E-49 | -1.69E-46 |
| MS.gene057246 | MS.gene20550 | 0.804255 | 2.36E-49 | -1.69E-46 |
| MS.gene057658 | MS.gene20550 | 0.806701 | 7.24E-50 | -1.69E-46 |
| MS.gene057831 | MS.gene20550 | 0.849558 | 2.99E-60 | -1.69E-46 |
| MS.gene058419 | MS.gene20550 | 0.822567 | 2.21E-53 | -1.69E-46 |
| MS.gene058544 | MS.gene20550 | 0.81382 | 2.11E-51 | -1.69E-46 |
| MS.gene058723 | MS.gene20550 | 0.804774 | 1.84E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene20550 | 0.820304 | 7.36E-53 | -1.69E-46 |
| MS.gene058838 | MS.gene20550 | 0.80469 | 1.91E-49 | -1.69E-46 |
| MS.gene05883 | MS.gene20550 | 0.826162 | 3.16E-54 | -1.69E-46 |
| MS.gene059022 | MS.gene20550 | 0.814161 | 1.77E-51 | -1.69E-46 |
| MS.gene059023 | MS.gene20550 | 0.827766 | 1.31E-54 | -1.69E-46 |
| MS.gene059079 | MS.gene20550 | 0.812126 | 4.96E-51 | -1.69E-46 |
| MS.gene05912 | MS.gene20550 | 0.809942 | 1.47E-50 | -1.69E-46 |
| MS.gene05914 | MS.gene20550 | 0.814818 | 1.27E-51 | -1.69E-46 |
| MS.gene059181 | MS.gene20550 | 0.826393 | 2.78E-54 | -1.69E-46 |
| MS.gene05934 | MS.gene20550 | 0.816624 | 5.02E-52 | -1.69E-46 |
| MS.gene059536 | MS.gene20550 | 0.801254 | 9.82E-49 | -1.69E-46 |
| MS.gene059677 | MS.gene20550 | 0.847984 | 8.18E-60 | -1.69E-46 |
| MS.gene059718 | MS.gene20550 | 0.824824 | 6.55E-54 | -1.69E-46 |
| MS.gene059756 | MS.gene20550 | 0.823006 | 1.75E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene20550 | 0.814748 | 1.32E-51 | -1.69E-46 |
| MS.gene059902 | MS.gene20550 | 0.802385 | 5.75E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene20550 | 0.816364 | 5.75E-52 | -1.69E-46 |
| MS.gene060762 | MS.gene20550 | 0.866322 | 3.10E-65 | -1.69E-46 |
| MS.gene06077 | MS.gene20550 | 0.805296 | 1.43E-49 | -1.69E-46 |
| MS.gene06092 | MS.gene20550 | 0.803455 | 3.46E-49 | -1.69E-46 |
| MS.gene060982 | MS.gene20550 | 0.815963 | 7.06E-52 | -1.69E-46 |
| MS.gene061150 | MS.gene20550 | 0.845421 | 4.11E-59 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20550.t1 | MTR_6g009400 | 91.331 | 323 | 23 | 2 | 1 | 318 | 1 | 323 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene20550.t1 | AT3G28460 | 65.064 | 312 | 100 | 5 | 8 | 314 | 7 | 314 | 1.28e-135 | 387 |
| MS.gene20550.t1 | AT3G28460 | 70.896 | 268 | 74 | 2 | 47 | 314 | 6 | 269 | 2.11e-135 | 385 |
| MS.gene20550.t1 | AT3G28460 | 62.500 | 272 | 93 | 5 | 8 | 274 | 7 | 274 | 5.90e-109 | 320 |
Find 91 sgRNAs with CRISPR-Local
Find 289 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGACACTCTTGGCAATTTA+TGG | 0.126823 | 6.3:-5183945 | MS.gene20550:CDS |
| CCAACGACTACATAGGTTAT+TGG | 0.246833 | 6.3:-5186416 | MS.gene20550:intron |
| GGCCGTACATCCATGCTATT+TGG | 0.304642 | 6.3:+5186362 | None:intergenic |
| TGCAGCCTTTGATATATTAC+AGG | 0.318111 | 6.3:-5186318 | MS.gene20550:intron |
| TTGCTTCTCCTTCTTCCTCT+TGG | 0.323566 | 6.3:+5187736 | None:intergenic |
| GAACGTGCTGAGCAATTTGT+AGG | 0.324735 | 6.3:-5185460 | MS.gene20550:intron |
| GGTGAGTGAAGAAGAGGGTT+TGG | 0.332965 | 6.3:+5188507 | None:intergenic |
| AATCCGGTCACCTCTAAGTT+TGG | 0.367798 | 6.3:+5185529 | None:intergenic |
| TGAAGAAAGATGATTGGTTT+TGG | 0.377488 | 6.3:+5188564 | None:intergenic |
| AGAAGGTGAAGAAAGATGAT+TGG | 0.401355 | 6.3:+5188558 | None:intergenic |
| ATTTCAGAATCACCCTTTGT+TGG | 0.401628 | 6.3:-5184546 | MS.gene20550:CDS |
| GCATAATCAACTTCGGCATA+TGG | 0.408226 | 6.3:+5184585 | None:intergenic |
| TACGACACATAAATTGCTTC+AGG | 0.418480 | 6.3:-5187657 | MS.gene20550:intron |
| CATAAATTGCCAAGAGTGTC+CGG | 0.439452 | 6.3:+5183946 | None:intergenic |
| TGTGTCGTACGAGGAGGCTT+AGG | 0.446140 | 6.3:+5187671 | None:intergenic |
| AGAAGAGGAAGAAGAGAAGA+AGG | 0.453274 | 6.3:+5188541 | None:intergenic |
| CAGATAACTGATAGGCGGTT+TGG | 0.457124 | 6.3:-5183969 | MS.gene20550:CDS |
| AGAAGAGGGTTTGGAGGTAA+AGG | 0.459927 | 6.3:+5188516 | None:intergenic |
| ATCTTGCGGACCCCTTGTTA+AGG | 0.459960 | 6.3:-5184384 | MS.gene20550:intron |
| GCGGTTTGGCCGGACACTCT+TGG | 0.478560 | 6.3:-5183955 | MS.gene20550:CDS |
| GACTGAATCATCAATGAATC+CGG | 0.478832 | 6.3:+5185513 | None:intergenic |
| TGCTTCAATTCCAACAGAAC+CGG | 0.478995 | 6.3:+5185898 | None:intergenic |
| TCCTTCGAAAACCGACATGC+TGG | 0.483247 | 6.3:-5184408 | MS.gene20550:CDS |
| GAAGAGGGTGAGTGAAGAAG+AGG | 0.485411 | 6.3:+5188501 | None:intergenic |
| AAAATCTTGCTTGAACGGTA+TGG | 0.485656 | 6.3:-5188166 | MS.gene20550:CDS |
| TTGAACTACAGATAACTGAT+AGG | 0.488177 | 6.3:-5183977 | MS.gene20550:intron |
| CGTCCAAACTTAGAGGTGAC+CGG | 0.490270 | 6.3:-5185532 | MS.gene20550:CDS |
| ACGAGGAGGCTTAGGTTCCT+CGG | 0.493850 | 6.3:+5187679 | None:intergenic |
| ACCTTTCACGACCTCCATCA+TGG | 0.495460 | 6.3:+5186340 | None:intergenic |
| AAGAGGGTGAGTGAAGAAGA+GGG | 0.502965 | 6.3:+5188502 | None:intergenic |
| GAGTGAAGAAGAGGGTTTGG+AGG | 0.508207 | 6.3:+5188510 | None:intergenic |
| CCTTTCACGACCTCCATCAT+GGG | 0.509515 | 6.3:+5186341 | None:intergenic |
| AGAAGTGGTGAGTGTGTTGG+AGG | 0.519714 | 6.3:+5188595 | None:intergenic |
| CGAGGAGGCTTAGGTTCCTC+GGG | 0.523166 | 6.3:+5187680 | None:intergenic |
| TGCAGAATCAGGAAATGGGT+TGG | 0.523471 | 6.3:-5188203 | MS.gene20550:intron |
| AGAATCACCCTTTGTTGGCA+AGG | 0.523800 | 6.3:-5184541 | MS.gene20550:CDS |
| AGAAGAAGTGGTGAGTGTGT+TGG | 0.525870 | 6.3:+5188592 | None:intergenic |
| CGCTGGTTAGACTTGTATAG+TGG | 0.526456 | 6.3:-5185923 | MS.gene20550:CDS |
| TGCTTGAATTTACCTTAACA+AGG | 0.530651 | 6.3:+5184372 | None:intergenic |
| CGTCCAGGTCTCAAGGATGC+AGG | 0.535253 | 6.3:+5185944 | None:intergenic |
| TTAGACTTGTATAGTGGTAC+CGG | 0.539201 | 6.3:-5185917 | MS.gene20550:CDS |
| AAAGTGTCCTTGCCAACAAA+GGG | 0.541708 | 6.3:+5184534 | None:intergenic |
| GGCAATTTATGGACCAACAT+GGG | 0.542760 | 6.3:-5183934 | MS.gene20550:CDS |
| CCCATGATGGAGGTCGTGAA+AGG | 0.545223 | 6.3:-5186341 | MS.gene20550:CDS |
| TATAGTGGTACCGGTTCTGT+TGG | 0.546355 | 6.3:-5185908 | MS.gene20550:CDS |
| GAGAAGCAAAAGACAAGAGG+AGG | 0.549129 | 6.3:-5187722 | MS.gene20550:CDS |
| CATGGATGTACGGCCCATGA+TGG | 0.550108 | 6.3:-5186354 | MS.gene20550:CDS |
| CACCAAATAGCATGGATGTA+CGG | 0.552523 | 6.3:-5186364 | MS.gene20550:CDS |
| AAAAGTGTCCTTGCCAACAA+AGG | 0.552534 | 6.3:+5184533 | None:intergenic |
| TAACTGATAGGCGGTTTGGC+CGG | 0.561860 | 6.3:-5183965 | MS.gene20550:CDS |
| TAACCAGCGTCCAGGTCTCA+AGG | 0.567725 | 6.3:+5185937 | None:intergenic |
| TCAATACCTCGGAGCATCCT+CGG | 0.568075 | 6.3:+5185870 | None:intergenic |
| TATTTAGTCCAAGAGGAAGA+AGG | 0.569457 | 6.3:-5187744 | MS.gene20550:intron |
| TGGTACCTGTAATATATCAA+AGG | 0.573403 | 6.3:+5186313 | None:intergenic |
| TACAAGTCTAACCAGCGTCC+AGG | 0.573471 | 6.3:+5185929 | None:intergenic |
| CTTACTTGAAGAAGAGAAGA+GGG | 0.574091 | 6.3:+5188486 | None:intergenic |
| AATCAACTTCGGCATATGGA+GGG | 0.576441 | 6.3:+5184589 | None:intergenic |
| TTGGAGGTAAAGGTAAGAAG+AGG | 0.577617 | 6.3:+5188526 | None:intergenic |
| AGAAGCAAAAGACAAGAGGA+GGG | 0.584569 | 6.3:-5187721 | MS.gene20550:CDS |
| AAGAGGAGGGAAACAAGTGC+AGG | 0.585690 | 6.3:-5187708 | MS.gene20550:CDS |
| CTTGAATTTACCTTAACAAG+GGG | 0.586373 | 6.3:+5184374 | None:intergenic |
| TAATCAACTTCGGCATATGG+AGG | 0.590868 | 6.3:+5184588 | None:intergenic |
| GAAGTGGTGAGTGTGTTGGA+GGG | 0.592049 | 6.3:+5188596 | None:intergenic |
| TTGATTATGCGGTTCTGATG+AGG | 0.593937 | 6.3:-5184572 | MS.gene20550:CDS |
| ATCAACTTCGGCATATGGAG+GGG | 0.594969 | 6.3:+5184590 | None:intergenic |
| ACCGACATGCTGGAATCTTG+CGG | 0.595355 | 6.3:-5184398 | MS.gene20550:CDS |
| CAGAACCGCATAATCAACTT+CGG | 0.597822 | 6.3:+5184578 | None:intergenic |
| TGGCAATTTATGGACCAACA+TGG | 0.601397 | 6.3:-5183935 | MS.gene20550:CDS |
| ACGACTACATAGGTTATTGG+AGG | 0.601598 | 6.3:-5186413 | MS.gene20550:intron |
| GCTTGAATTTACCTTAACAA+GGG | 0.603556 | 6.3:+5184373 | None:intergenic |
| GCTACTCTCACCAAATAGCA+TGG | 0.604667 | 6.3:-5186372 | MS.gene20550:CDS |
| AAGGAGAAGCAAAAGACAAG+AGG | 0.609156 | 6.3:-5187725 | MS.gene20550:CDS |
| TCCGCAAGATTCCAGCATGT+CGG | 0.609206 | 6.3:+5184397 | None:intergenic |
| TATAATGCCAAGGCGGCTGG+TGG | 0.610188 | 6.3:-5185971 | MS.gene20550:intron |
| GGATGTACGGCCCATGATGG+AGG | 0.611047 | 6.3:-5186351 | MS.gene20550:CDS |
| AGTCCTGCATCCTTGAGACC+TGG | 0.614215 | 6.3:-5185947 | MS.gene20550:CDS |
| CATCCTTGAGACCTGGACGC+TGG | 0.621329 | 6.3:-5185940 | MS.gene20550:CDS |
| ACTTACTTGAAGAAGAGAAG+AGG | 0.628559 | 6.3:+5188485 | None:intergenic |
| AACTACAGATAACTGATAGG+CGG | 0.628659 | 6.3:-5183974 | MS.gene20550:intron |
| AATTTATGTGTCGTACGAGG+AGG | 0.630888 | 6.3:+5187665 | None:intergenic |
| GGAGGCTTAGGTTCCTCGGG+TGG | 0.631875 | 6.3:+5187683 | None:intergenic |
| TGTTCACATGCAGGAAACAG+TGG | 0.638456 | 6.3:-5184636 | MS.gene20550:intron |
| ATATGCCGAAGTTGATTATG+CGG | 0.640316 | 6.3:-5184583 | MS.gene20550:CDS |
| AAGTGGTGAGTGTGTTGGAG+GGG | 0.640997 | 6.3:+5188597 | None:intergenic |
| GGAATTGAAGCACTTAGCCG+AGG | 0.644882 | 6.3:-5185887 | MS.gene20550:CDS |
| GTGCAACTATTTAGTCCAAG+AGG | 0.658741 | 6.3:-5187751 | MS.gene20550:intron |
| AGCAATTTATGTGTCGTACG+AGG | 0.674970 | 6.3:+5187662 | None:intergenic |
| AAAACATCTGATACAACCCA+TGG | 0.699216 | 6.3:+5185556 | None:intergenic |
| ACAAGTGCAGGATCCACCCG+AGG | 0.726554 | 6.3:-5187696 | MS.gene20550:CDS |
| ACTTAGCCGAGGATGCTCCG+AGG | 0.757908 | 6.3:-5185876 | MS.gene20550:intron |
| GTTCGAAGAATTTCTCAACG+CGG | 0.768031 | 6.3:+5185479 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACAAATGAATTATTAGAAA+AGG | - | chr6.3:5187437-5187456 | MS.gene20550:intron | 15.0% |
| !! | AATAAAAACTGTATCAAATA+CGG | + | chr6.3:5187641-5187660 | None:intergenic | 15.0% |
| !! | ACGATATTATTTAAAAAAAG+AGG | - | chr6.3:5186733-5186752 | MS.gene20550:intron | 15.0% |
| !! | TCTAAACTTATAACTTAAAA+AGG | + | chr6.3:5185276-5185295 | None:intergenic | 15.0% |
| !!! | AATCTCATATTTTATTGTAA+TGG | + | chr6.3:5185336-5185355 | None:intergenic | 15.0% |
| !!! | AGTTTTTTAATGATTTTTTG+TGG | - | chr6.3:5184234-5184253 | MS.gene20550:intron | 15.0% |
| !!! | CCATAAATGTTTTTAAATTT+GGG | + | chr6.3:5187182-5187201 | None:intergenic | 15.0% |
| !!! | GTAAATTACAACTTTTATAA+GGG | - | chr6.3:5184454-5184473 | MS.gene20550:intron | 15.0% |
| !!! | TGTAAATTACAACTTTTATA+AGG | - | chr6.3:5184453-5184472 | MS.gene20550:intron | 15.0% |
| !!! | TTATTTAAGATTATCTATTG+AGG | + | chr6.3:5186398-5186417 | None:intergenic | 15.0% |
| !!! | TTATTTTATCGAATAATTAC+CGG | - | chr6.3:5184142-5184161 | MS.gene20550:intron | 15.0% |
| !! | AAACATATGCTAAATTAAGA+TGG | + | chr6.3:5185859-5185878 | None:intergenic | 20.0% |
| !! | AATATGATGATAATATTGCT+AGG | - | chr6.3:5185557-5185576 | MS.gene20550:CDS | 20.0% |
| !! | ACGAAATAAATAACTCTTAT+TGG | + | chr6.3:5185402-5185421 | None:intergenic | 20.0% |
| !! | AGAAAAAAATGCATTGTAAA+TGG | + | chr6.3:5186853-5186872 | None:intergenic | 20.0% |
| !! | ATATGATGATAATATTGCTA+GGG | - | chr6.3:5185558-5185577 | MS.gene20550:CDS | 20.0% |
| !! | ATCTTAATTTAGCATATGTT+TGG | - | chr6.3:5185858-5185877 | MS.gene20550:intron | 20.0% |
| !! | ATGTGTAAAATGAAGTTAAA+AGG | + | chr6.3:5187079-5187098 | None:intergenic | 20.0% |
| !! | CAATATTATCATCATATTGT+TGG | + | chr6.3:5185555-5185574 | None:intergenic | 20.0% |
| !! | CCCAAATTTAAAAACATTTA+TGG | - | chr6.3:5187179-5187198 | MS.gene20550:intron | 20.0% |
| !! | GAAAAAAATGCATTGTAAAT+GGG | + | chr6.3:5186852-5186871 | None:intergenic | 20.0% |
| !!! | ACTTTGTAGAAATTTGTTTT+TGG | - | chr6.3:5186028-5186047 | MS.gene20550:intron | 20.0% |
| !!! | CAATGCATTTTTTTCTTTTA+TGG | - | chr6.3:5186857-5186876 | MS.gene20550:intron | 20.0% |
| !!! | GCCATAAATGTTTTTAAATT+TGG | + | chr6.3:5187183-5187202 | None:intergenic | 20.0% |
| !!! | TCATATTGTTGGATATTTTA+CGG | + | chr6.3:5185544-5185563 | None:intergenic | 20.0% |
| !!! | TGATTGAGATGTATTTTATA+TGG | - | chr6.3:5187714-5187733 | MS.gene20550:CDS | 20.0% |
| !!! | TTAACAAAAGCAAACATTTT+AGG | - | chr6.3:5186898-5186917 | MS.gene20550:intron | 20.0% |
| !!! | TTTTCTTACTTTCTTATTCA+TGG | - | chr6.3:5188000-5188019 | MS.gene20550:intron | 20.0% |
| !!! | TTTTTGTGGTTTAAAATGAT+GGG | - | chr6.3:5184248-5184267 | MS.gene20550:intron | 20.0% |
| !!! | TTTTTTGTGGTTTAAAATGA+TGG | - | chr6.3:5184247-5184266 | MS.gene20550:intron | 20.0% |
| ! | AAATATGAAGGACAACAAAA+AGG | + | chr6.3:5185305-5185324 | None:intergenic | 25.0% |
| ! | AAATGGTTCAAAAAGACTAA+AGG | + | chr6.3:5188373-5188392 | None:intergenic | 25.0% |
| ! | AATGTTTGTGGATACATTAT+AGG | + | chr6.3:5187589-5187608 | None:intergenic | 25.0% |
| ! | AGAAAAAAATCTTGCTTGAA+CGG | - | chr6.3:5184326-5184345 | MS.gene20550:intron | 25.0% |
| ! | AGATGTCAAAAAAATGTTTG+TGG | + | chr6.3:5187601-5187620 | None:intergenic | 25.0% |
| ! | CAAATTTCTACAAAGTTCAA+AGG | + | chr6.3:5186024-5186043 | None:intergenic | 25.0% |
| ! | CTAAATGATATTTGCATGAA+AGG | + | chr6.3:5185175-5185194 | None:intergenic | 25.0% |
| ! | CTTTCATGCAAATATCATTT+AGG | - | chr6.3:5185173-5185192 | MS.gene20550:intron | 25.0% |
| ! | GAAATGCAATAAATATTCCA+AGG | - | chr6.3:5187518-5187537 | MS.gene20550:intron | 25.0% |
| ! | TATATTACTTAGACCATGTT+TGG | - | chr6.3:5186225-5186244 | MS.gene20550:intron | 25.0% |
| ! | TGAATTATTAGAAAAGGTTC+CGG | - | chr6.3:5187443-5187462 | MS.gene20550:intron | 25.0% |
| ! | TTTCTGATAGTTAATACTTG+AGG | - | chr6.3:5185582-5185601 | MS.gene20550:intron | 25.0% |
| !! | CAAAGCATTATAACCTATAA+GGG | - | chr6.3:5185829-5185848 | MS.gene20550:intron | 25.0% |
| !! | CATATTGTTGGATATTTTAC+GGG | + | chr6.3:5185543-5185562 | None:intergenic | 25.0% |
| !! | CTGTGTAAATCAATTTTACA+TGG | - | chr6.3:5185372-5185391 | MS.gene20550:intron | 25.0% |
| !! | GTTTTGCAAAATTGTAAACA+CGG | + | chr6.3:5188161-5188180 | None:intergenic | 25.0% |
| !! | TAGTCTTTTTGAACCATTTA+GGG | - | chr6.3:5188374-5188393 | MS.gene20550:intron | 25.0% |
| !! | TATCAGTTTTCTAATGTATC+TGG | - | chr6.3:5187771-5187790 | MS.gene20550:intron | 25.0% |
| !! | TCAAAGCATTATAACCTATA+AGG | - | chr6.3:5185828-5185847 | MS.gene20550:intron | 25.0% |
| !! | TTAAGTTGTTTATCCAAACA+TGG | + | chr6.3:5186241-5186260 | None:intergenic | 25.0% |
| !! | TTGTTGCTTCTACAAATTTA+TGG | + | chr6.3:5185927-5185946 | None:intergenic | 25.0% |
| !!! | AAATGTTTTTAAATTTGGGC+TGG | + | chr6.3:5187178-5187197 | None:intergenic | 25.0% |
| !!! | ATATTTTATTGTAATGGAGC+AGG | + | chr6.3:5185330-5185349 | None:intergenic | 25.0% |
| !!! | GATTTTGTTTTATAATGCCA+AGG | - | chr6.3:5186516-5186535 | MS.gene20550:intron | 25.0% |
| !!! | GGTAATCTCATTTTAATACT+TGG | - | chr6.3:5184861-5184880 | MS.gene20550:intron | 25.0% |
| !!! | GTGTTTTGTTTTTTTTGATG+TGG | - | chr6.3:5184724-5184743 | MS.gene20550:intron | 25.0% |
| !!! | TCATGGTCTAAATAGTTTTA+TGG | - | chr6.3:5188017-5188036 | MS.gene20550:intron | 25.0% |
| !!! | TTAGTCTTTTTGAACCATTT+AGG | - | chr6.3:5188373-5188392 | MS.gene20550:intron | 25.0% |
| AAAAAGCTGAAAACAGCTTA+TGG | - | chr6.3:5186319-5186338 | MS.gene20550:CDS | 30.0% | |
| AAAGGCAGTAAGTATGTATT+TGG | + | chr6.3:5186006-5186025 | None:intergenic | 30.0% | |
| AATTTGAATTGTTCACATGC+AGG | - | chr6.3:5187852-5187871 | MS.gene20550:intron | 30.0% | |
| ACAATCATACAAAAACACAG+AGG | + | chr6.3:5184418-5184437 | None:intergenic | 30.0% | |
| CAGATATTACTTGACATATG+TGG | + | chr6.3:5188212-5188231 | None:intergenic | 30.0% | |
| CATGAACACTTCTCATATAA+GGG | - | chr6.3:5186275-5186294 | MS.gene20550:intron | 30.0% | |
| CATGCAAATATCATTTAGGA+TGG | - | chr6.3:5185177-5185196 | MS.gene20550:intron | 30.0% | |
| CATTGAAAACATCAATACCT+CGG | + | chr6.3:5186641-5186660 | None:intergenic | 30.0% | |
| CTAAGATGAGAGACATATTT+GGG | - | chr6.3:5185243-5185262 | MS.gene20550:intron | 30.0% | |
| CTTGAATTTACCTTAACAAG+GGG | + | chr6.3:5188126-5188145 | None:intergenic | 30.0% | |
| GCTATTAAGAATTTCGTTCA+AGG | - | chr6.3:5187496-5187515 | MS.gene20550:intron | 30.0% | |
| GCTTGAATTTACCTTAACAA+GGG | + | chr6.3:5188127-5188146 | None:intergenic | 30.0% | |
| GGAAAAAAATGAAACACCTT+TGG | + | chr6.3:5184397-5184416 | None:intergenic | 30.0% | |
| GGATGGTAAGAAAATTATGA+AGG | - | chr6.3:5187813-5187832 | MS.gene20550:intron | 30.0% | |
| GTCATAAAATCACACATGAT+TGG | - | chr6.3:5184664-5184683 | MS.gene20550:intron | 30.0% | |
| GTTATAATGCTTTGATGCAA+CGG | + | chr6.3:5185823-5185842 | None:intergenic | 30.0% | |
| TAAGATGAGAGACATATTTG+GGG | - | chr6.3:5185244-5185263 | MS.gene20550:intron | 30.0% | |
| TCCAAAAATATAACCCTAAG+AGG | + | chr6.3:5188350-5188369 | None:intergenic | 30.0% | |
| TGATAATAAGCTCAAAGGAT+TGG | + | chr6.3:5185633-5185652 | None:intergenic | 30.0% | |
| TGCTTCTACAAATTTATGGT+GGG | + | chr6.3:5185923-5185942 | None:intergenic | 30.0% | |
| TGCTTGAATTTACCTTAACA+AGG | + | chr6.3:5188128-5188147 | None:intergenic | 30.0% | |
| TGGTACCTGTAATATATCAA+AGG | + | chr6.3:5186187-5186206 | None:intergenic | 30.0% | |
| TTAAGATGGTATACCCTTAT+AGG | + | chr6.3:5185845-5185864 | None:intergenic | 30.0% | |
| TTATAATGCTTTGATGCAAC+GGG | + | chr6.3:5185822-5185841 | None:intergenic | 30.0% | |
| TTGAACTACAGATAACTGAT+AGG | - | chr6.3:5188520-5188539 | MS.gene20550:CDS | 30.0% | |
| TTGCTTCTACAAATTTATGG+TGG | + | chr6.3:5185924-5185943 | None:intergenic | 30.0% | |
| TTTATTTCCAACGACTACAT+AGG | - | chr6.3:5186074-5186093 | MS.gene20550:intron | 30.0% | |
| ! | AATTTACAAGACTGAGTTGA+CGG | - | chr6.3:5185448-5185467 | MS.gene20550:intron | 30.0% |
| ! | ATCCTTTTCTTTTGACGATA+CGG | + | chr6.3:5187797-5187816 | None:intergenic | 30.0% |
| ! | ATTTTGCAGAATCAGGAAAT+GGG | - | chr6.3:5184290-5184309 | MS.gene20550:intron | 30.0% |
| ! | CTAAAAACATGGGACATTTT+TGG | + | chr6.3:5188327-5188346 | None:intergenic | 30.0% |
| ! | GATATTTTACGGGTTTAAAG+GGG | + | chr6.3:5185533-5185552 | None:intergenic | 30.0% |
| ! | GCAAAACATGCAAAATTTTG+TGG | - | chr6.3:5188174-5188193 | MS.gene20550:CDS | 30.0% |
| ! | GGATATTTTACGGGTTTAAA+GGG | + | chr6.3:5185534-5185553 | None:intergenic | 30.0% |
| ! | GTTGAATATTTTGCAGAATC+AGG | - | chr6.3:5184283-5184302 | MS.gene20550:intron | 30.0% |
| ! | GTTTGAGTAGTTAGCTTATA+TGG | - | chr6.3:5185710-5185729 | MS.gene20550:intron | 30.0% |
| ! | TATTTTGCAGAATCAGGAAA+TGG | - | chr6.3:5184289-5184308 | MS.gene20550:intron | 30.0% |
| ! | TCAAAACGGTTGATTCTTAT+TGG | - | chr6.3:5185471-5185490 | MS.gene20550:CDS | 30.0% |
| ! | TCTAAGATGAGAGACATATT+TGG | - | chr6.3:5185242-5185261 | MS.gene20550:intron | 30.0% |
| ! | TGGATATTTTACGGGTTTAA+AGG | + | chr6.3:5185535-5185554 | None:intergenic | 30.0% |
| !! | ATGCTTTTAATCAGAAGTGT+CGG | + | chr6.3:5184062-5184081 | None:intergenic | 30.0% |
| !! | GAACTCTCATGTTTTTATCT+AGG | - | chr6.3:5188056-5188075 | MS.gene20550:intron | 30.0% |
| !! | GATTGAATGTTCTAAAGTGT+TGG | - | chr6.3:5185110-5185129 | MS.gene20550:intron | 30.0% |
| !! | GTATTGATGTTTTCAATGAG+CGG | - | chr6.3:5186643-5186662 | MS.gene20550:intron | 30.0% |
| !! | GTGAAGTTGTTTTACATTGA+CGG | - | chr6.3:5185502-5185521 | MS.gene20550:CDS | 30.0% |
| !! | TACGTTGATAATAAGCTCAA+AGG | + | chr6.3:5185638-5185657 | None:intergenic | 30.0% |
| !!! | TAAGTGTCAGTTTTATTCGA+GGG | + | chr6.3:5187692-5187711 | None:intergenic | 30.0% |
| !!! | TGAAGAAAGATGATTGGTTT+TGG | + | chr6.3:5183936-5183955 | None:intergenic | 30.0% |
| !!! | TTCATCATTGCTGATTTTGA+AGG | - | chr6.3:5184202-5184221 | MS.gene20550:intron | 30.0% |
| !!! | TTTGTTTTATAATGCCAAGG+CGG | - | chr6.3:5186519-5186538 | MS.gene20550:intron | 30.0% |
| AAAACATCTGATACAACCCA+TGG | + | chr6.3:5186944-5186963 | None:intergenic | 35.0% | |
| AAAATCTTGCTTGAACGGTA+TGG | - | chr6.3:5184331-5184350 | MS.gene20550:intron | 35.0% | |
| AACTACAGATAACTGATAGG+CGG | - | chr6.3:5188523-5188542 | MS.gene20550:CDS | 35.0% | |
| AACTGTATCAAATACGGTGT+TGG | + | chr6.3:5187635-5187654 | None:intergenic | 35.0% | |
| ACAAGCAAACAAGTGTACTA+AGG | + | chr6.3:5186427-5186446 | None:intergenic | 35.0% | |
| ACTTACTTGAAGAAGAGAAG+AGG | + | chr6.3:5184015-5184034 | None:intergenic | 35.0% | |
| AGAAGGTGAAGAAAGATGAT+TGG | + | chr6.3:5183942-5183961 | None:intergenic | 35.0% | |
| ATATCTGTAGTCAATAGCAG+TGG | - | chr6.3:5188225-5188244 | MS.gene20550:intron | 35.0% | |
| ATGGAGCAGGAAAAATATGA+AGG | + | chr6.3:5185317-5185336 | None:intergenic | 35.0% | |
| ATTTCAGAATCACCCTTTGT+TGG | - | chr6.3:5187951-5187970 | MS.gene20550:intron | 35.0% | |
| CTAAGCTCGTCTAAAAAGTA+AGG | + | chr6.3:5185014-5185033 | None:intergenic | 35.0% | |
| CTTACTTGAAGAAGAGAAGA+GGG | + | chr6.3:5184014-5184033 | None:intergenic | 35.0% | |
| GACTGAATCATCAATGAATC+CGG | + | chr6.3:5186987-5187006 | None:intergenic | 35.0% | |
| GCATGAACACTTCTCATATA+AGG | - | chr6.3:5186274-5186293 | MS.gene20550:intron | 35.0% | |
| GTATCGTCAAAAGAAAAGGA+TGG | - | chr6.3:5187796-5187815 | MS.gene20550:intron | 35.0% | |
| TACGACACATAAATTGCTTC+AGG | - | chr6.3:5184840-5184859 | MS.gene20550:intron | 35.0% | |
| TAGTCATTGAAACACCGAAA+CGG | - | chr6.3:5185031-5185050 | MS.gene20550:intron | 35.0% | |
| TATTTAGTCCAAGAGGAAGA+AGG | - | chr6.3:5184753-5184772 | MS.gene20550:intron | 35.0% | |
| TCTCATATAAGGGCTTATCA+TGG | - | chr6.3:5186285-5186304 | MS.gene20550:intron | 35.0% | |
| TGCAGCCTTTGATATATTAC+AGG | - | chr6.3:5186179-5186198 | MS.gene20550:intron | 35.0% | |
| TTAGACTTGTATAGTGGTAC+CGG | - | chr6.3:5186580-5186599 | MS.gene20550:intron | 35.0% | |
| ! | AATTTATGGTGGGATAGCAT+AGG | + | chr6.3:5185913-5185932 | None:intergenic | 35.0% |
| ! | ATATGCCGAAGTTGATTATG+CGG | - | chr6.3:5187914-5187933 | MS.gene20550:intron | 35.0% |
| ! | ATTTTGTTGAGATGGATCCA+TGG | - | chr6.3:5186924-5186943 | MS.gene20550:intron | 35.0% |
| ! | CTTTTCTCAATCTTCTCCAA+AGG | - | chr6.3:5184378-5184397 | MS.gene20550:intron | 35.0% |
| ! | GCCTCTTAGGGTTATATTTT+TGG | - | chr6.3:5188346-5188365 | MS.gene20550:intron | 35.0% |
| ! | TTAGGTGCATTTTGTTGAGA+TGG | - | chr6.3:5186916-5186935 | MS.gene20550:intron | 35.0% |
| ! | TTTTGTTGAGATGGATCCAT+GGG | - | chr6.3:5186925-5186944 | MS.gene20550:intron | 35.0% |
| !! | ATAGTGGTTTGTTCGAATTG+CGG | - | chr6.3:5187238-5187257 | MS.gene20550:intron | 35.0% |
| !! | ATTCATGAAAGTGCTTCTTC+CGG | + | chr6.3:5187465-5187484 | None:intergenic | 35.0% |
| !! | CGTGACTTTAGAATCAGTTA+CGG | + | chr6.3:5186716-5186735 | None:intergenic | 35.0% |
| !! | TTAAATTTGGGCTGGTAAAG+AGG | + | chr6.3:5187170-5187189 | None:intergenic | 35.0% |
| !!! | GTAAGTGTCAGTTTTATTCG+AGG | + | chr6.3:5187693-5187712 | None:intergenic | 35.0% |
| AAAGTAAGGCATGCTTCACT+CGG | + | chr6.3:5185000-5185019 | None:intergenic | 40.0% | |
| AACACTTACAGAACTCAAGC+TGG | + | chr6.3:5188496-5188515 | None:intergenic | 40.0% | |
| AAGGAGAAGCAAAAGACAAG+AGG | - | chr6.3:5184772-5184791 | MS.gene20550:intron | 40.0% | |
| AATCAACTTCGGCATATGGA+GGG | + | chr6.3:5187911-5187930 | None:intergenic | 40.0% | |
| AATTTATGTGTCGTACGAGG+AGG | + | chr6.3:5184835-5184854 | None:intergenic | 40.0% | |
| ACACTTACAGAACTCAAGCT+GGG | + | chr6.3:5188495-5188514 | None:intergenic | 40.0% | |
| ACCCTAAGAGGCTAAAAACA+TGG | + | chr6.3:5188338-5188357 | None:intergenic | 40.0% | |
| ACCCTTACTACTGGAACAAA+AGG | - | chr6.3:5187116-5187135 | MS.gene20550:intron | 40.0% | |
| ACGACTACATAGGTTATTGG+AGG | - | chr6.3:5186084-5186103 | MS.gene20550:intron | 40.0% | |
| AGAAGAGGAAGAAGAGAAGA+AGG | + | chr6.3:5183959-5183978 | None:intergenic | 40.0% | |
| AGAAGCAAAAGACAAGAGGA+GGG | - | chr6.3:5184776-5184795 | MS.gene20550:intron | 40.0% | |
| AGCAATTTATGTGTCGTACG+AGG | + | chr6.3:5184838-5184857 | None:intergenic | 40.0% | |
| AGTGAGTCAAAAGAGAAACG+AGG | + | chr6.3:5188435-5188454 | None:intergenic | 40.0% | |
| ATAACAGCGTTATAGCACTG+TGG | - | chr6.3:5187369-5187388 | MS.gene20550:intron | 40.0% | |
| CAAGCAGTGTTGTCAAATAG+AGG | + | chr6.3:5187402-5187421 | None:intergenic | 40.0% | |
| CACCAAATAGCATGGATGTA+CGG | - | chr6.3:5186133-5186152 | MS.gene20550:intron | 40.0% | |
| CAGAACCGCATAATCAACTT+CGG | + | chr6.3:5187922-5187941 | None:intergenic | 40.0% | |
| CAGTGCTATAACGCTGTTAT+AGG | + | chr6.3:5187369-5187388 | None:intergenic | 40.0% | |
| CCAACGACTACATAGGTTAT+TGG | - | chr6.3:5186081-5186100 | MS.gene20550:intron | 40.0% | |
| CCAATAACCTATGTAGTCGT+TGG | + | chr6.3:5186084-5186103 | None:intergenic | 40.0% | |
| CCCTAAGAGGCTAAAAACAT+GGG | + | chr6.3:5188337-5188356 | None:intergenic | 40.0% | |
| CCCTTACTACTGGAACAAAA+GGG | - | chr6.3:5187117-5187136 | MS.gene20550:intron | 40.0% | |
| CGCGATATCATGGAAAATAG+TGG | - | chr6.3:5187222-5187241 | MS.gene20550:intron | 40.0% | |
| GCATAATCAACTTCGGCATA+TGG | + | chr6.3:5187915-5187934 | None:intergenic | 40.0% | |
| GGCAATTTATGGACCAACAT+GGG | - | chr6.3:5188563-5188582 | MS.gene20550:CDS | 40.0% | |
| GTGCAACTATTTAGTCCAAG+AGG | - | chr6.3:5184746-5184765 | MS.gene20550:intron | 40.0% | |
| GTGTTGTAATCGCGATATCA+TGG | - | chr6.3:5187212-5187231 | MS.gene20550:intron | 40.0% | |
| GTTCGAAGAATTTCTCAACG+CGG | + | chr6.3:5187021-5187040 | None:intergenic | 40.0% | |
| TAATCAACTTCGGCATATGG+AGG | + | chr6.3:5187912-5187931 | None:intergenic | 40.0% | |
| TACAACTAACAAGTCGACAC+CGG | + | chr6.3:5184164-5184183 | None:intergenic | 40.0% | |
| TACGAGATAACACTTGCAAC+TGG | + | chr6.3:5186207-5186226 | None:intergenic | 40.0% | |
| TCAGTGTATTGTGTCCGTTT+CGG | + | chr6.3:5185048-5185067 | None:intergenic | 40.0% | |
| TGCATATTTGCAAGAGACTC+AGG | + | chr6.3:5187549-5187568 | None:intergenic | 40.0% | |
| TGCTTCAATTCCAACAGAAC+CGG | + | chr6.3:5186602-5186621 | None:intergenic | 40.0% | |
| TGGATAGATTGCTGTGAAGT+TGG | - | chr6.3:5184938-5184957 | MS.gene20550:intron | 40.0% | |
| TGGCAATTTATGGACCAACA+TGG | - | chr6.3:5188562-5188581 | MS.gene20550:CDS | 40.0% | |
| TTAGCATATGTTTGGATGCG+TGG | - | chr6.3:5185866-5185885 | MS.gene20550:intron | 40.0% | |
| TTATAGGCTATAGCGTAGCA+GGG | + | chr6.3:5187353-5187372 | None:intergenic | 40.0% | |
| TTGATGCAACGGGTGTTAAA+AGG | + | chr6.3:5185812-5185831 | None:intergenic | 40.0% | |
| TTGCAAAAGTTGAGATGCAG+TGG | - | chr6.3:5184576-5184595 | MS.gene20550:CDS | 40.0% | |
| TTGGAGGTAAAGGTAAGAAG+AGG | + | chr6.3:5183974-5183993 | None:intergenic | 40.0% | |
| ! | AAAGTGTCCTTGCCAACAAA+GGG | + | chr6.3:5187966-5187985 | None:intergenic | 40.0% |
| ! | ACCCTTTTGTTCCAGTAGTA+AGG | + | chr6.3:5187121-5187140 | None:intergenic | 40.0% |
| ! | CCCTTTTGTTCCAGTAGTAA+GGG | + | chr6.3:5187120-5187139 | None:intergenic | 40.0% |
| ! | TCAAATACGGTGTTGGATGA+TGG | + | chr6.3:5187628-5187647 | None:intergenic | 40.0% |
| ! | TGTTTTGCGTCCAAACTTAG+AGG | - | chr6.3:5186958-5186977 | MS.gene20550:intron | 40.0% |
| ! | TTGATTATGCGGTTCTGATG+AGG | - | chr6.3:5187925-5187944 | MS.gene20550:intron | 40.0% |
| !! | AAAAGTGTCCTTGCCAACAA+AGG | + | chr6.3:5187967-5187986 | None:intergenic | 40.0% |
| !! | CATAAATTGCCAAGAGTGTC+CGG | + | chr6.3:5188554-5188573 | None:intergenic | 40.0% |
| !! | CTTGGAAGTGCTAATTGATG+AGG | - | chr6.3:5184879-5184898 | MS.gene20550:intron | 40.0% |
| !! | TAGTGGTTTGTTCGAATTGC+GGG | - | chr6.3:5187239-5187258 | MS.gene20550:intron | 40.0% |
| !!! | CATGGGACATTTTTGGCTTT+TGG | + | chr6.3:5188320-5188339 | None:intergenic | 40.0% |
| !!! | CCCATGTTTTTAGCCTCTTA+GGG | - | chr6.3:5188334-5188353 | MS.gene20550:intron | 40.0% |
| !!! | GTTTTGGTGTTGAGAAGAAG+TGG | + | chr6.3:5183920-5183939 | None:intergenic | 40.0% |
| !!! | TCCCATGTTTTTAGCCTCTT+AGG | - | chr6.3:5188333-5188352 | MS.gene20550:intron | 40.0% |
| AACGTGACTAGACTCAGTGT+AGG | + | chr6.3:5185144-5185163 | None:intergenic | 45.0% | |
| AAGAGGGTGAGTGAAGAAGA+GGG | + | chr6.3:5183998-5184017 | None:intergenic | 45.0% | |
| AAGTAAGGCATGCTTCACTC+GGG | + | chr6.3:5184999-5185018 | None:intergenic | 45.0% | |
| AATCCGGTCACCTCTAAGTT+TGG | + | chr6.3:5186971-5186990 | None:intergenic | 45.0% | |
| ACCAAGCTTCCATGTCAACA+TGG | - | chr6.3:5185948-5185967 | MS.gene20550:CDS | 45.0% | |
| ACCATGTTGACATGGAAGCT+TGG | + | chr6.3:5185952-5185971 | None:intergenic | 45.0% | |
| AGAAGAAGTGGTGAGTGTGT+TGG | + | chr6.3:5183908-5183927 | None:intergenic | 45.0% | |
| AGAAGAGGGTTTGGAGGTAA+AGG | + | chr6.3:5183984-5184003 | None:intergenic | 45.0% | |
| AGAATCACCCTTTGTTGGCA+AGG | - | chr6.3:5187956-5187975 | MS.gene20550:intron | 45.0% | |
| ATCAACTTCGGCATATGGAG+GGG | + | chr6.3:5187910-5187929 | None:intergenic | 45.0% | |
| CAGATAACTGATAGGCGGTT+TGG | - | chr6.3:5188528-5188547 | MS.gene20550:CDS | 45.0% | |
| CGGACACTCTTGGCAATTTA+TGG | - | chr6.3:5188552-5188571 | MS.gene20550:CDS | 45.0% | |
| CGGTCAAAACCATGTTGACA+TGG | + | chr6.3:5185960-5185979 | None:intergenic | 45.0% | |
| CTACTGGAACAAAAGGGTTG+TGG | - | chr6.3:5187123-5187142 | MS.gene20550:intron | 45.0% | |
| CTAGACTCAGTGTAGGAACT+AGG | + | chr6.3:5185137-5185156 | None:intergenic | 45.0% | |
| GAACGTGCTGAGCAATTTGT+AGG | - | chr6.3:5187037-5187056 | MS.gene20550:intron | 45.0% | |
| GAGAAGCAAAAGACAAGAGG+AGG | - | chr6.3:5184775-5184794 | MS.gene20550:intron | 45.0% | |
| GCTACTCTCACCAAATAGCA+TGG | - | chr6.3:5186125-5186144 | MS.gene20550:intron | 45.0% | |
| GGAGAGGCTAAAACCCTAAA+TGG | + | chr6.3:5188390-5188409 | None:intergenic | 45.0% | |
| GGCCGTATCGTCAAAAGAAA+AGG | - | chr6.3:5187792-5187811 | MS.gene20550:intron | 45.0% | |
| GGCTTATCATGGCGAGTTTA+TGG | - | chr6.3:5186296-5186315 | MS.gene20550:intron | 45.0% | |
| GTCAAAAGAGAAACGAGGAG+AGG | + | chr6.3:5188430-5188449 | None:intergenic | 45.0% | |
| GTTATAGGCTATAGCGTAGC+AGG | + | chr6.3:5187354-5187373 | None:intergenic | 45.0% | |
| TCTGTAGTCAATAGCAGTGG+TGG | - | chr6.3:5188228-5188247 | MS.gene20550:intron | 45.0% | |
| TGATTTATGTACGCGCTGCA+GGG | - | chr6.3:5185980-5185999 | MS.gene20550:intron | 45.0% | |
| TGCAGAATCAGGAAATGGGT+TGG | - | chr6.3:5184294-5184313 | MS.gene20550:intron | 45.0% | |
| TGCAGCGCGTACATAAATCA+CGG | + | chr6.3:5185980-5185999 | None:intergenic | 45.0% | |
| TGTTCACATGCAGGAAACAG+TGG | - | chr6.3:5187861-5187880 | MS.gene20550:intron | 45.0% | |
| TGTTCCAGTAGTAAGGGTTC+TGG | + | chr6.3:5187114-5187133 | None:intergenic | 45.0% | |
| TTGCTTCTCCTTCTTCCTCT+TGG | + | chr6.3:5184764-5184783 | None:intergenic | 45.0% | |
| ! | CGCTGGTTAGACTTGTATAG+TGG | - | chr6.3:5186574-5186593 | MS.gene20550:intron | 45.0% |
| ! | CTCTTCTTTTGAGCCCATGT+TGG | + | chr6.3:5188579-5188598 | None:intergenic | 45.0% |
| ! | GACTGAGTTGACGGTCAAAA+CGG | - | chr6.3:5185457-5185476 | MS.gene20550:intron | 45.0% |
| ! | TTTTATAATGCCAAGGCGGC+TGG | - | chr6.3:5186523-5186542 | MS.gene20550:intron | 45.0% |
| !! | GCGTGGCTGTAAACTTTTTC+TGG | - | chr6.3:5185883-5185902 | MS.gene20550:CDS | 45.0% |
| !! | TATAGTGGTACCGGTTCTGT+TGG | - | chr6.3:5186589-5186608 | MS.gene20550:intron | 45.0% |
| AAGAGACTCAGGCAGAACCT+TGG | + | chr6.3:5187538-5187557 | None:intergenic | 50.0% | |
| AAGAGGAGGGAAACAAGTGC+AGG | - | chr6.3:5184789-5184808 | MS.gene20550:intron | 50.0% | |
| AAGTGGTGAGTGTGTTGGAG+GGG | + | chr6.3:5183903-5183922 | None:intergenic | 50.0% | |
| ACAGCGTTATAGCACTGTGG+CGG | - | chr6.3:5187372-5187391 | MS.gene20550:intron | 50.0% | |
| ACCGACATGCTGGAATCTTG+CGG | - | chr6.3:5188099-5188118 | MS.gene20550:intron | 50.0% | |
| ACCTTTCACGACCTCCATCA+TGG | + | chr6.3:5186160-5186179 | None:intergenic | 50.0% | |
| AGAAGTGGTGAGTGTGTTGG+AGG | + | chr6.3:5183905-5183924 | None:intergenic | 50.0% | |
| AGACTGCTTAGGAGAGCTTG+TGG | + | chr6.3:5186363-5186382 | None:intergenic | 50.0% | |
| AGTGGTGGTTGCTGCAATTG+CGG | - | chr6.3:5188243-5188262 | MS.gene20550:intron | 50.0% | |
| ATCTTGCGGACCCCTTGTTA+AGG | - | chr6.3:5188113-5188132 | MS.gene20550:intron | 50.0% | |
| CAGTCCAGAACCCTTACTAC+TGG | - | chr6.3:5187107-5187126 | MS.gene20550:intron | 50.0% | |
| CCTTTCACGACCTCCATCAT+GGG | + | chr6.3:5186159-5186178 | None:intergenic | 50.0% | |
| CGTCCAAACTTAGAGGTGAC+CGG | - | chr6.3:5186965-5186984 | MS.gene20550:intron | 50.0% | |
| CTCTCCTAAGCAGTCTCACA+AGG | - | chr6.3:5186367-5186386 | MS.gene20550:CDS | 50.0% | |
| GAAGAGGGTGAGTGAAGAAG+AGG | + | chr6.3:5183999-5184018 | None:intergenic | 50.0% | |
| GAAGTGGTGAGTGTGTTGGA+GGG | + | chr6.3:5183904-5183923 | None:intergenic | 50.0% | |
| GAGTCCTTGTGAGACTGCTT+AGG | + | chr6.3:5186374-5186393 | None:intergenic | 50.0% | |
| GAGTGAAGAAGAGGGTTTGG+AGG | + | chr6.3:5183990-5184009 | None:intergenic | 50.0% | |
| GGCCGTACATCCATGCTATT+TGG | + | chr6.3:5186138-5186157 | None:intergenic | 50.0% | |
| GGTGAGTGAAGAAGAGGGTT+TGG | + | chr6.3:5183993-5184012 | None:intergenic | 50.0% | |
| GTCAGAGCAGATCTGTGTTG+CGG | - | chr6.3:5188286-5188305 | MS.gene20550:intron | 50.0% | |
| GTGATTTATGTACGCGCTGC+AGG | - | chr6.3:5185979-5185998 | MS.gene20550:intron | 50.0% | |
| TACAAGTCTAACCAGCGTCC+AGG | + | chr6.3:5186571-5186590 | None:intergenic | 50.0% | |
| TCCGCAAGATTCCAGCATGT+CGG | + | chr6.3:5188103-5188122 | None:intergenic | 50.0% | |
| TCCTTCGAAAACCGACATGC+TGG | - | chr6.3:5188089-5188108 | MS.gene20550:intron | 50.0% | |
| ! | GGAATTGAAGCACTTAGCCG+AGG | - | chr6.3:5186610-5186629 | MS.gene20550:intron | 50.0% |
| ! | TAACTGATAGGCGGTTTGGC+CGG | - | chr6.3:5188532-5188551 | MS.gene20550:CDS | 50.0% |
| ! | TCAATACCTCGGAGCATCCT+CGG | + | chr6.3:5186630-5186649 | None:intergenic | 50.0% |
| !! | CTATAGAAGCACCACAGCAC+TGG | + | chr6.3:5187268-5187287 | None:intergenic | 50.0% |
| !!! | TCCAGCATGTCGGTTTTCGA+AGG | + | chr6.3:5188093-5188112 | None:intergenic | 50.0% |
| ACGAGGAGGCTTAGGTTCCT+CGG | + | chr6.3:5184821-5184840 | None:intergenic | 55.0% | |
| AGTCCTGCATCCTTGAGACC+TGG | - | chr6.3:5186550-5186569 | MS.gene20550:intron | 55.0% | |
| CATGGATGTACGGCCCATGA+TGG | - | chr6.3:5186143-5186162 | MS.gene20550:intron | 55.0% | |
| CGCGAAAGAGAAGTGAGGAG+AGG | + | chr6.3:5188406-5188425 | None:intergenic | 55.0% | |
| GAGGTCGCGAAAGAGAAGTG+AGG | + | chr6.3:5188411-5188430 | None:intergenic | 55.0% | |
| TAACCAGCGTCCAGGTCTCA+AGG | + | chr6.3:5186563-5186582 | None:intergenic | 55.0% | |
| TATAATGCCAAGGCGGCTGG+TGG | - | chr6.3:5186526-5186545 | MS.gene20550:intron | 55.0% | |
| TGCGTGCGCGTGTGTGATAA+TGG | - | chr6.3:5184918-5184937 | MS.gene20550:intron | 55.0% | |
| TGTCGCACACTGACAGGTGT+GGG | + | chr6.3:5184094-5184113 | None:intergenic | 55.0% | |
| TGTGTCGTACGAGGAGGCTT+AGG | + | chr6.3:5184829-5184848 | None:intergenic | 55.0% | |
| TGTTCGTGTCGCACACTGAC+AGG | + | chr6.3:5184100-5184119 | None:intergenic | 55.0% | |
| ! | CCCATGATGGAGGTCGTGAA+AGG | - | chr6.3:5186156-5186175 | MS.gene20550:intron | 55.0% |
| ACAAGTGCAGGATCCACCCG+AGG | - | chr6.3:5184801-5184820 | MS.gene20550:intron | 60.0% | |
| ACTTAGCCGAGGATGCTCCG+AGG | - | chr6.3:5186621-5186640 | MS.gene20550:intron | 60.0% | |
| ATTGCGGGATGCCAGTGCTG+TGG | - | chr6.3:5187254-5187273 | MS.gene20550:intron | 60.0% | |
| CACTGACAGGTGTGGGACAC+TGG | + | chr6.3:5184087-5184106 | None:intergenic | 60.0% | |
| CATCCTTGAGACCTGGACGC+TGG | - | chr6.3:5186557-5186576 | MS.gene20550:intron | 60.0% | |
| CGAGGAGGCTTAGGTTCCTC+GGG | + | chr6.3:5184820-5184839 | None:intergenic | 60.0% | |
| CGTCCAGGTCTCAAGGATGC+AGG | + | chr6.3:5186556-5186575 | None:intergenic | 60.0% | |
| GGATGTACGGCCCATGATGG+AGG | - | chr6.3:5186146-5186165 | MS.gene20550:intron | 60.0% | |
| GTGTCGCACACTGACAGGTG+TGG | + | chr6.3:5184095-5184114 | None:intergenic | 60.0% | |
| GCTGCAATTGCGGCAGTGCG+TGG | - | chr6.3:5188253-5188272 | MS.gene20550:intron | 65.0% | |
| GGAGGCTTAGGTTCCTCGGG+TGG | + | chr6.3:5184817-5184836 | None:intergenic | 65.0% | |
| TGCGGCAGTGCGTGGCACAA+CGG | - | chr6.3:5188261-5188280 | MS.gene20550:intron | 65.0% | |
| ! | GCGGTTTGGCCGGACACTCT+TGG | - | chr6.3:5188542-5188561 | MS.gene20550:CDS | 65.0% |
| AGGACTGCCACCAGCCGCCT+TGG | + | chr6.3:5186536-5186555 | None:intergenic | 70.0% | |
| GGCAGTGCGTGGCACAACGG+AGG | - | chr6.3:5188264-5188283 | MS.gene20550:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 5183887 | 5188632 | 5183887 | ID=MS.gene20550 |
| chr6.3 | mRNA | 5183887 | 5188632 | 5183887 | ID=MS.gene20550.t1;Parent=MS.gene20550 |
| chr6.3 | exon | 5188491 | 5188632 | 5188491 | ID=MS.gene20550.t1.exon1;Parent=MS.gene20550.t1 |
| chr6.3 | CDS | 5188491 | 5188632 | 5188491 | ID=cds.MS.gene20550.t1;Parent=MS.gene20550.t1 |
| chr6.3 | exon | 5188120 | 5188220 | 5188120 | ID=MS.gene20550.t1.exon2;Parent=MS.gene20550.t1 |
| chr6.3 | CDS | 5188120 | 5188220 | 5188120 | ID=cds.MS.gene20550.t1;Parent=MS.gene20550.t1 |
| chr6.3 | exon | 5187658 | 5187759 | 5187658 | ID=MS.gene20550.t1.exon3;Parent=MS.gene20550.t1 |
| chr6.3 | CDS | 5187658 | 5187759 | 5187658 | ID=cds.MS.gene20550.t1;Parent=MS.gene20550.t1 |
| chr6.3 | exon | 5186319 | 5186423 | 5186319 | ID=MS.gene20550.t1.exon4;Parent=MS.gene20550.t1 |
| chr6.3 | CDS | 5186319 | 5186423 | 5186319 | ID=cds.MS.gene20550.t1;Parent=MS.gene20550.t1 |
| chr6.3 | exon | 5185877 | 5185981 | 5185877 | ID=MS.gene20550.t1.exon5;Parent=MS.gene20550.t1 |
| chr6.3 | CDS | 5185877 | 5185981 | 5185877 | ID=cds.MS.gene20550.t1;Parent=MS.gene20550.t1 |
| chr6.3 | exon | 5185461 | 5185599 | 5185461 | ID=MS.gene20550.t1.exon6;Parent=MS.gene20550.t1 |
| chr6.3 | CDS | 5185461 | 5185599 | 5185461 | ID=cds.MS.gene20550.t1;Parent=MS.gene20550.t1 |
| chr6.3 | exon | 5184530 | 5184645 | 5184530 | ID=MS.gene20550.t1.exon7;Parent=MS.gene20550.t1 |
| chr6.3 | CDS | 5184530 | 5184645 | 5184530 | ID=cds.MS.gene20550.t1;Parent=MS.gene20550.t1 |
| chr6.3 | exon | 5184385 | 5184441 | 5184385 | ID=MS.gene20550.t1.exon8;Parent=MS.gene20550.t1 |
| chr6.3 | CDS | 5184385 | 5184441 | 5184385 | ID=cds.MS.gene20550.t1;Parent=MS.gene20550.t1 |
| chr6.3 | exon | 5183887 | 5183988 | 5183887 | ID=MS.gene20550.t1.exon9;Parent=MS.gene20550.t1 |
| chr6.3 | CDS | 5183887 | 5183988 | 5183887 | ID=cds.MS.gene20550.t1;Parent=MS.gene20550.t1 |
| Gene Sequence |
| Protein sequence |
