Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24493.t1 | XP_003589041.1 | 97.5 | 405 | 10 | 0 | 1 | 405 | 30 | 434 | 1.60E-207 | 731.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24493.t1 | Q058P4 | 59.0 | 405 | 160 | 4 | 1 | 405 | 50 | 448 | 2.9e-128 | 459.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24493.t1 | G7IBA8 | 97.5 | 405 | 10 | 0 | 1 | 405 | 30 | 434 | 1.2e-207 | 731.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene24493 | 0.830064 | 3.62E-55 | -1.69E-46 |
| MS.gene049159 | MS.gene24493 | 0.806003 | 1.02E-49 | -1.69E-46 |
| MS.gene049254 | MS.gene24493 | 0.842053 | 3.27E-58 | -1.69E-46 |
| MS.gene049343 | MS.gene24493 | 0.805666 | 1.20E-49 | -1.69E-46 |
| MS.gene049368 | MS.gene24493 | 0.804925 | 1.71E-49 | -1.69E-46 |
| MS.gene049404 | MS.gene24493 | 0.817248 | 3.64E-52 | -1.69E-46 |
| MS.gene049435 | MS.gene24493 | 0.808459 | 3.07E-50 | -1.69E-46 |
| MS.gene049711 | MS.gene24493 | 0.818969 | 1.49E-52 | -1.69E-46 |
| MS.gene049850 | MS.gene24493 | 0.805651 | 1.20E-49 | -1.69E-46 |
| MS.gene050156 | MS.gene24493 | 0.800616 | 1.33E-48 | -1.69E-46 |
| MS.gene050253 | MS.gene24493 | 0.815524 | 8.85E-52 | -1.69E-46 |
| MS.gene050355 | MS.gene24493 | 0.801633 | 8.21E-49 | -1.69E-46 |
| MS.gene050559 | MS.gene24493 | 0.826397 | 2.77E-54 | -1.69E-46 |
| MS.gene050561 | MS.gene24493 | 0.827368 | 1.63E-54 | -1.69E-46 |
| MS.gene050562 | MS.gene24493 | 0.816588 | 5.12E-52 | -1.69E-46 |
| MS.gene050780 | MS.gene24493 | 0.809573 | 1.77E-50 | -1.69E-46 |
| MS.gene050807 | MS.gene24493 | 0.818162 | 2.26E-52 | -1.69E-46 |
| MS.gene050901 | MS.gene24493 | 0.815741 | 7.91E-52 | -1.69E-46 |
| MS.gene051181 | MS.gene24493 | 0.802601 | 5.19E-49 | -1.69E-46 |
| MS.gene051198 | MS.gene24493 | 0.806041 | 9.97E-50 | -1.69E-46 |
| MS.gene051247 | MS.gene24493 | 0.817295 | 3.55E-52 | -1.69E-46 |
| MS.gene051279 | MS.gene24493 | 0.82695 | 2.05E-54 | -1.69E-46 |
| MS.gene051492 | MS.gene24493 | 0.821734 | 3.45E-53 | -1.69E-46 |
| MS.gene051574 | MS.gene24493 | 0.837203 | 5.97E-57 | -1.69E-46 |
| MS.gene051676 | MS.gene24493 | 0.827998 | 1.15E-54 | -1.69E-46 |
| MS.gene051719 | MS.gene24493 | 0.824547 | 7.61E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene24493 | 0.823195 | 1.58E-53 | -1.69E-46 |
| MS.gene051744 | MS.gene24493 | 0.852313 | 5.01E-61 | -1.69E-46 |
| MS.gene052239 | MS.gene24493 | -0.803343 | 3.65E-49 | -1.69E-46 |
| MS.gene052519 | MS.gene24493 | 0.82321 | 1.57E-53 | -1.69E-46 |
| MS.gene052582 | MS.gene24493 | 0.80866 | 2.78E-50 | -1.69E-46 |
| MS.gene052584 | MS.gene24493 | 0.822438 | 2.37E-53 | -1.69E-46 |
| MS.gene052773 | MS.gene24493 | 0.802614 | 5.16E-49 | -1.69E-46 |
| MS.gene053226 | MS.gene24493 | 0.834946 | 2.23E-56 | -1.69E-46 |
| MS.gene05364 | MS.gene24493 | 0.80157 | 8.46E-49 | -1.69E-46 |
| MS.gene053966 | MS.gene24493 | 0.808574 | 2.90E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene24493 | 0.800524 | 1.38E-48 | -1.69E-46 |
| MS.gene05415 | MS.gene24493 | 0.8117 | 6.14E-51 | -1.69E-46 |
| MS.gene054236 | MS.gene24493 | 0.823542 | 1.31E-53 | -1.69E-46 |
| MS.gene05423 | MS.gene24493 | 0.820536 | 6.51E-53 | -1.69E-46 |
| MS.gene054576 | MS.gene24493 | 0.82198 | 3.03E-53 | -1.69E-46 |
| MS.gene05458 | MS.gene24493 | 0.827713 | 1.34E-54 | -1.69E-46 |
| MS.gene054651 | MS.gene24493 | 0.825292 | 5.07E-54 | -1.69E-46 |
| MS.gene05468 | MS.gene24493 | 0.801181 | 1.02E-48 | -1.69E-46 |
| MS.gene054775 | MS.gene24493 | 0.821716 | 3.48E-53 | -1.69E-46 |
| MS.gene055227 | MS.gene24493 | 0.805846 | 1.10E-49 | -1.69E-46 |
| MS.gene055228 | MS.gene24493 | 0.80235 | 5.85E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene24493 | 0.80678 | 6.97E-50 | -1.69E-46 |
| MS.gene055513 | MS.gene24493 | 0.807375 | 5.21E-50 | -1.69E-46 |
| MS.gene055608 | MS.gene24493 | 0.803196 | 3.91E-49 | -1.69E-46 |
| MS.gene055623 | MS.gene24493 | 0.805257 | 1.46E-49 | -1.69E-46 |
| MS.gene055818 | MS.gene24493 | 0.824602 | 7.38E-54 | -1.69E-46 |
| MS.gene055926 | MS.gene24493 | 0.819324 | 1.23E-52 | -1.69E-46 |
| MS.gene056050 | MS.gene24493 | 0.850723 | 1.41E-60 | -1.69E-46 |
| MS.gene056162 | MS.gene24493 | 0.810059 | 1.39E-50 | -1.69E-46 |
| MS.gene056174 | MS.gene24493 | 0.814712 | 1.34E-51 | -1.69E-46 |
| MS.gene056308 | MS.gene24493 | 0.817845 | 2.67E-52 | -1.69E-46 |
| MS.gene056366 | MS.gene24493 | 0.843067 | 1.76E-58 | -1.69E-46 |
| MS.gene05686 | MS.gene24493 | 0.81667 | 4.91E-52 | -1.69E-46 |
| MS.gene057026 | MS.gene24493 | 0.802028 | 6.81E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene24493 | 0.809315 | 2.01E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene24493 | 0.8389 | 2.19E-57 | -1.69E-46 |
| MS.gene057444 | MS.gene24493 | 0.833847 | 4.22E-56 | -1.69E-46 |
| MS.gene058010 | MS.gene24493 | 0.815843 | 7.51E-52 | -1.69E-46 |
| MS.gene058037 | MS.gene24493 | 0.812298 | 4.55E-51 | -1.69E-46 |
| MS.gene058477 | MS.gene24493 | 0.805908 | 1.06E-49 | -1.69E-46 |
| MS.gene05847 | MS.gene24493 | 0.841169 | 5.59E-58 | -1.69E-46 |
| MS.gene058625 | MS.gene24493 | 0.835516 | 1.60E-56 | -1.69E-46 |
| MS.gene058829 | MS.gene24493 | 0.819207 | 1.31E-52 | -1.69E-46 |
| MS.gene058979 | MS.gene24493 | 0.828883 | 7.02E-55 | -1.69E-46 |
| MS.gene059439 | MS.gene24493 | 0.80492 | 1.71E-49 | -1.69E-46 |
| MS.gene059570 | MS.gene24493 | 0.811208 | 7.85E-51 | -1.69E-46 |
| MS.gene059625 | MS.gene24493 | 0.815866 | 7.42E-52 | -1.69E-46 |
| MS.gene059842 | MS.gene24493 | 0.821213 | 4.55E-53 | -1.69E-46 |
| MS.gene060310 | MS.gene24493 | 0.804156 | 2.47E-49 | -1.69E-46 |
| MS.gene060637 | MS.gene24493 | 0.804027 | 2.63E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene24493 | 0.817285 | 3.57E-52 | -1.69E-46 |
| MS.gene060937 | MS.gene24493 | 0.814205 | 1.73E-51 | -1.69E-46 |
| MS.gene060998 | MS.gene24493 | 0.804078 | 2.57E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24493.t1 | MTR_1g017770 | 98.272 | 405 | 7 | 0 | 1 | 405 | 30 | 434 | 0.0 | 804 |
| MS.gene24493.t1 | MTR_5g015210 | 64.198 | 405 | 139 | 4 | 1 | 405 | 53 | 451 | 0.0 | 525 |
| MS.gene24493.t1 | MTR_8g092870 | 29.412 | 408 | 236 | 14 | 16 | 388 | 10 | 400 | 1.01e-35 | 135 |
| MS.gene24493.t1 | MTR_4g085720 | 25.879 | 398 | 261 | 7 | 7 | 384 | 5 | 388 | 3.16e-31 | 123 |
| MS.gene24493.t1 | MTR_5g077510 | 27.543 | 403 | 238 | 10 | 16 | 384 | 35 | 417 | 4.93e-30 | 120 |
| MS.gene24493.t1 | MTR_4g063800 | 26.684 | 386 | 255 | 9 | 16 | 386 | 255 | 627 | 4.11e-28 | 117 |
| MS.gene24493.t1 | MTR_4g485520 | 28.198 | 344 | 221 | 8 | 16 | 343 | 105 | 438 | 5.53e-28 | 115 |
| MS.gene24493.t1 | MTR_7g106340 | 28.095 | 420 | 260 | 11 | 15 | 402 | 7 | 416 | 1.18e-27 | 113 |
| MS.gene24493.t1 | MTR_4g485520 | 28.198 | 344 | 221 | 8 | 16 | 343 | 273 | 606 | 1.23e-27 | 115 |
| MS.gene24493.t1 | MTR_3g095730 | 28.463 | 397 | 252 | 11 | 16 | 388 | 13 | 401 | 1.83e-27 | 113 |
| MS.gene24493.t1 | MTR_1g094215 | 28.099 | 363 | 228 | 9 | 16 | 356 | 64 | 415 | 2.64e-27 | 113 |
| MS.gene24493.t1 | MTR_1g094215 | 28.099 | 363 | 228 | 9 | 16 | 356 | 247 | 598 | 9.39e-27 | 112 |
| MS.gene24493.t1 | MTR_6g071340 | 26.434 | 401 | 253 | 10 | 16 | 384 | 5 | 395 | 9.84e-27 | 111 |
| MS.gene24493.t1 | MTR_7g078330 | 26.579 | 380 | 245 | 9 | 16 | 379 | 274 | 635 | 1.74e-26 | 112 |
| MS.gene24493.t1 | MTR_3g065080 | 25.917 | 409 | 260 | 10 | 2 | 384 | 26 | 417 | 4.94e-26 | 109 |
| MS.gene24493.t1 | MTR_3g096370 | 29.293 | 396 | 240 | 10 | 16 | 384 | 10 | 392 | 7.74e-26 | 108 |
| MS.gene24493.t1 | MTR_5g048050 | 26.434 | 401 | 253 | 10 | 16 | 384 | 25 | 415 | 3.90e-25 | 106 |
| MS.gene24493.t1 | MTR_2g062480 | 64.368 | 87 | 11 | 1 | 101 | 187 | 50 | 116 | 1.88e-24 | 97.8 |
| MS.gene24493.t1 | MTR_7g059405 | 28.955 | 335 | 215 | 10 | 16 | 338 | 264 | 587 | 1.31e-23 | 103 |
| MS.gene24493.t1 | MTR_2g018010 | 27.667 | 300 | 190 | 6 | 5 | 283 | 280 | 573 | 9.02e-21 | 95.1 |
| MS.gene24493.t1 | MTR_2g087350 | 27.027 | 407 | 277 | 12 | 10 | 402 | 1 | 401 | 2.11e-20 | 92.8 |
| MS.gene24493.t1 | MTR_7g053260 | 27.184 | 309 | 200 | 8 | 17 | 311 | 79 | 376 | 5.99e-20 | 91.7 |
| MS.gene24493.t1 | MTR_5g083030 | 24.793 | 363 | 226 | 10 | 15 | 343 | 292 | 641 | 4.14e-19 | 90.1 |
| MS.gene24493.t1 | MTR_7g116600 | 27.326 | 344 | 216 | 12 | 17 | 341 | 79 | 407 | 4.84e-19 | 89.0 |
| MS.gene24493.t1 | MTR_1g056870 | 27.650 | 434 | 246 | 18 | 12 | 392 | 4 | 422 | 1.60e-18 | 87.4 |
| MS.gene24493.t1 | MTR_1g056880 | 27.465 | 426 | 257 | 15 | 12 | 392 | 4 | 422 | 1.83e-18 | 87.0 |
| MS.gene24493.t1 | MTR_4g107010 | 29.167 | 312 | 186 | 10 | 17 | 305 | 281 | 580 | 3.78e-18 | 87.0 |
| MS.gene24493.t1 | MTR_1g056910 | 27.229 | 415 | 250 | 18 | 10 | 392 | 1 | 395 | 1.09e-17 | 84.7 |
| MS.gene24493.t1 | MTR_1g056840 | 26.241 | 423 | 238 | 14 | 13 | 392 | 5 | 396 | 3.63e-17 | 83.2 |
| MS.gene24493.t1 | MTR_3g078160 | 27.329 | 322 | 193 | 9 | 17 | 312 | 276 | 582 | 6.27e-17 | 83.2 |
| MS.gene24493.t1 | MTR_3g078160 | 27.329 | 322 | 193 | 9 | 17 | 312 | 276 | 582 | 6.79e-17 | 83.2 |
| MS.gene24493.t1 | MTR_5g034440 | 28.618 | 304 | 189 | 9 | 20 | 304 | 284 | 578 | 1.07e-16 | 82.4 |
| MS.gene24493.t1 | MTR_4g028960 | 30.531 | 226 | 115 | 8 | 16 | 208 | 280 | 496 | 1.32e-16 | 82.4 |
| MS.gene24493.t1 | MTR_4g091880 | 26.911 | 327 | 193 | 9 | 15 | 335 | 4 | 290 | 9.74e-16 | 78.2 |
| MS.gene24493.t1 | MTR_2g011140 | 26.437 | 348 | 229 | 11 | 22 | 358 | 21 | 352 | 1.01e-15 | 78.6 |
| MS.gene24493.t1 | MTR_3g085610 | 50.000 | 66 | 33 | 0 | 17 | 82 | 281 | 346 | 5.63e-15 | 77.4 |
| MS.gene24493.t1 | MTR_4g091880 | 26.100 | 341 | 206 | 11 | 15 | 335 | 4 | 318 | 3.83e-14 | 73.9 |
| MS.gene24493.t1 | MTR_3g078160 | 28.626 | 262 | 162 | 6 | 16 | 256 | 275 | 532 | 6.14e-14 | 73.9 |
| MS.gene24493.t1 | MTR_1g069845 | 46.970 | 66 | 35 | 0 | 17 | 82 | 125 | 190 | 2.21e-13 | 72.4 |
| MS.gene24493.t1 | MTR_1g069845 | 46.970 | 66 | 35 | 0 | 17 | 82 | 246 | 311 | 2.99e-13 | 72.0 |
| MS.gene24493.t1 | MTR_1g093965 | 47.692 | 65 | 34 | 0 | 29 | 93 | 1 | 65 | 3.16e-13 | 68.6 |
| MS.gene24493.t1 | MTR_1g069845 | 46.970 | 66 | 35 | 0 | 17 | 82 | 242 | 307 | 3.17e-13 | 72.0 |
| MS.gene24493.t1 | MTR_1g093995 | 47.692 | 65 | 34 | 0 | 29 | 93 | 1 | 65 | 3.37e-13 | 68.6 |
| MS.gene24493.t1 | MTR_1g079450 | 25.275 | 273 | 181 | 7 | 16 | 274 | 63 | 326 | 3.47e-13 | 71.2 |
| MS.gene24493.t1 | MTR_3g466220 | 47.761 | 67 | 35 | 0 | 16 | 82 | 233 | 299 | 1.17e-12 | 70.1 |
| MS.gene24493.t1 | MTR_3g466220 | 47.761 | 67 | 35 | 0 | 16 | 82 | 212 | 278 | 1.23e-12 | 70.1 |
| MS.gene24493.t1 | MTR_4g051515 | 47.887 | 71 | 34 | 2 | 15 | 82 | 5 | 75 | 3.18e-12 | 68.2 |
| MS.gene24493.t1 | MTR_3g115670 | 27.966 | 236 | 137 | 10 | 13 | 234 | 27 | 243 | 3.88e-12 | 68.6 |
| MS.gene24493.t1 | MTR_8g080280 | 45.455 | 66 | 36 | 0 | 17 | 82 | 283 | 348 | 7.10e-12 | 67.8 |
| MS.gene24493.t1 | MTR_7g097020 | 45.455 | 66 | 35 | 1 | 17 | 82 | 243 | 307 | 9.09e-12 | 67.4 |
| MS.gene24493.t1 | MTR_8g077205 | 45.455 | 66 | 36 | 0 | 17 | 82 | 276 | 341 | 1.02e-11 | 67.0 |
| MS.gene24493.t1 | MTR_8g077205 | 45.455 | 66 | 36 | 0 | 17 | 82 | 164 | 229 | 1.14e-11 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene24493.t1 | AT3G49810 | 61.728 | 405 | 149 | 4 | 1 | 405 | 50 | 448 | 0.0 | 511 |
| MS.gene24493.t1 | AT5G65920 | 59.753 | 405 | 157 | 4 | 1 | 405 | 46 | 444 | 8.51e-173 | 490 |
| MS.gene24493.t1 | AT5G65920 | 59.753 | 405 | 157 | 4 | 1 | 405 | 46 | 444 | 8.51e-173 | 490 |
| MS.gene24493.t1 | AT3G19380 | 32.718 | 379 | 238 | 10 | 7 | 370 | 5 | 381 | 8.22e-42 | 152 |
| MS.gene24493.t1 | AT1G49780 | 30.886 | 395 | 254 | 8 | 7 | 384 | 5 | 397 | 8.98e-37 | 139 |
| MS.gene24493.t1 | AT5G64660 | 27.924 | 419 | 230 | 13 | 16 | 388 | 10 | 402 | 2.73e-32 | 126 |
| MS.gene24493.t1 | AT3G18710 | 27.384 | 409 | 259 | 13 | 8 | 390 | 4 | 400 | 1.63e-31 | 124 |
| MS.gene24493.t1 | AT3G54850 | 28.824 | 340 | 215 | 8 | 16 | 339 | 248 | 576 | 4.34e-31 | 125 |
| MS.gene24493.t1 | AT1G23030 | 27.761 | 335 | 219 | 9 | 16 | 337 | 241 | 565 | 2.66e-28 | 117 |
| MS.gene24493.t1 | AT2G35930 | 26.585 | 410 | 273 | 10 | 10 | 400 | 6 | 406 | 3.91e-28 | 115 |
| MS.gene24493.t1 | AT3G46510 | 25.907 | 386 | 258 | 9 | 16 | 386 | 256 | 628 | 3.31e-27 | 114 |
| MS.gene24493.t1 | AT1G66160 | 26.753 | 385 | 252 | 11 | 16 | 384 | 33 | 403 | 1.08e-26 | 111 |
| MS.gene24493.t1 | AT1G71020 | 27.566 | 341 | 219 | 9 | 16 | 338 | 95 | 425 | 1.73e-26 | 111 |
| MS.gene24493.t1 | AT1G71020 | 27.566 | 341 | 219 | 9 | 16 | 338 | 243 | 573 | 3.36e-26 | 111 |
| MS.gene24493.t1 | AT5G37490 | 25.515 | 388 | 262 | 7 | 16 | 384 | 31 | 410 | 4.47e-26 | 109 |
| MS.gene24493.t1 | AT5G42340 | 30.894 | 246 | 159 | 6 | 16 | 253 | 290 | 532 | 1.19e-25 | 109 |
| MS.gene24493.t1 | AT2G28830 | 27.273 | 308 | 198 | 4 | 17 | 306 | 185 | 484 | 1.07e-24 | 106 |
| MS.gene24493.t1 | AT5G09800 | 26.434 | 401 | 253 | 15 | 13 | 388 | 8 | 391 | 2.51e-23 | 101 |
| MS.gene24493.t1 | AT3G52450 | 26.190 | 420 | 259 | 12 | 10 | 384 | 1 | 414 | 3.28e-22 | 98.2 |
| MS.gene24493.t1 | AT1G29340 | 26.027 | 292 | 191 | 5 | 11 | 283 | 300 | 585 | 5.10e-20 | 92.8 |
| MS.gene24493.t1 | AT3G07360 | 28.477 | 302 | 186 | 10 | 17 | 302 | 75 | 362 | 1.67e-17 | 84.3 |
| MS.gene24493.t1 | AT4G21350 | 25.378 | 331 | 228 | 7 | 15 | 338 | 4 | 322 | 1.10e-16 | 81.3 |
| MS.gene24493.t1 | AT5G01830 | 29.756 | 205 | 126 | 4 | 15 | 205 | 273 | 473 | 1.38e-16 | 82.4 |
| MS.gene24493.t1 | AT1G67530 | 54.545 | 66 | 30 | 0 | 17 | 82 | 273 | 338 | 1.19e-15 | 79.3 |
| MS.gene24493.t1 | AT1G67530 | 54.545 | 66 | 30 | 0 | 17 | 82 | 273 | 338 | 1.19e-15 | 79.3 |
| MS.gene24493.t1 | AT1G67530 | 54.545 | 66 | 30 | 0 | 17 | 82 | 273 | 338 | 1.19e-15 | 79.3 |
| MS.gene24493.t1 | AT1G67530 | 54.545 | 66 | 30 | 0 | 17 | 82 | 273 | 338 | 1.22e-15 | 79.0 |
| MS.gene24493.t1 | AT1G60190 | 27.957 | 279 | 175 | 9 | 22 | 281 | 284 | 555 | 6.34e-15 | 77.0 |
| MS.gene24493.t1 | AT1G24330 | 51.515 | 66 | 32 | 0 | 17 | 82 | 276 | 341 | 3.04e-14 | 75.1 |
| MS.gene24493.t1 | AT1G24330 | 51.515 | 66 | 32 | 0 | 17 | 82 | 276 | 341 | 3.04e-14 | 75.1 |
| MS.gene24493.t1 | AT3G11840 | 39.167 | 120 | 65 | 5 | 15 | 128 | 9 | 126 | 6.69e-14 | 73.6 |
| MS.gene24493.t1 | AT1G27910 | 51.515 | 66 | 32 | 0 | 17 | 82 | 280 | 345 | 8.30e-14 | 73.9 |
| MS.gene24493.t1 | AT1G10560 | 24.845 | 322 | 200 | 10 | 20 | 309 | 292 | 603 | 3.46e-13 | 71.6 |
| MS.gene24493.t1 | AT2G23140 | 47.619 | 63 | 33 | 0 | 20 | 82 | 237 | 299 | 8.61e-13 | 70.5 |
| MS.gene24493.t1 | AT2G23140 | 47.619 | 63 | 33 | 0 | 20 | 82 | 234 | 296 | 9.23e-13 | 70.5 |
| MS.gene24493.t1 | AT2G23140 | 47.619 | 63 | 33 | 0 | 20 | 82 | 234 | 296 | 9.23e-13 | 70.5 |
| MS.gene24493.t1 | AT2G23140 | 47.619 | 63 | 33 | 0 | 20 | 82 | 45 | 107 | 1.00e-12 | 70.1 |
| MS.gene24493.t1 | AT2G23140 | 47.619 | 63 | 33 | 0 | 20 | 82 | 45 | 107 | 1.00e-12 | 70.1 |
| MS.gene24493.t1 | AT3G54790 | 42.647 | 68 | 39 | 0 | 16 | 83 | 202 | 269 | 1.72e-12 | 69.7 |
| MS.gene24493.t1 | AT3G54790 | 42.647 | 68 | 39 | 0 | 16 | 83 | 238 | 305 | 2.07e-12 | 69.3 |
| MS.gene24493.t1 | AT3G54790 | 42.647 | 68 | 39 | 0 | 16 | 83 | 238 | 305 | 2.07e-12 | 69.3 |
| MS.gene24493.t1 | AT3G02840 | 28.025 | 157 | 107 | 3 | 233 | 383 | 195 | 351 | 7.60e-12 | 67.0 |
| MS.gene24493.t1 | AT5G65500 | 41.096 | 73 | 43 | 0 | 14 | 86 | 721 | 793 | 2.75e-11 | 65.9 |
| MS.gene24493.t1 | AT5G65500 | 41.096 | 73 | 43 | 0 | 14 | 86 | 713 | 785 | 2.81e-11 | 65.9 |
Find 69 sgRNAs with CRISPR-Local
Find 73 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTGGTATCCTTGTGAATT+TGG | 0.153287 | 1.1:-4826014 | MS.gene24493:CDS |
| GACCAAGTGAAAACCATTTA+AGG | 0.159560 | 1.1:+4826362 | None:intergenic |
| AAACACTCATTATTCAAATT+TGG | 0.168306 | 1.1:+4825656 | None:intergenic |
| CATCCAAATGGGATCTTAAT+TGG | 0.246900 | 1.1:-4825773 | MS.gene24493:CDS |
| ATAGATCCAACATCCTTAAA+TGG | 0.267794 | 1.1:-4826375 | MS.gene24493:CDS |
| GGTTTGGTTTGTTCTTTGTT+AGG | 0.271110 | 1.1:-4826070 | MS.gene24493:CDS |
| TCAAAGCTCTTAAGGATCTT+AGG | 0.281536 | 1.1:-4826150 | MS.gene24493:CDS |
| AACACTTGAAGAAGGGAAAT+TGG | 0.284907 | 1.1:-4825600 | MS.gene24493:CDS |
| ATTGATTGAAATGTTGTTGA+TGG | 0.296284 | 1.1:-4825882 | MS.gene24493:CDS |
| GCCTTTGAAGCACATTCTTC+AGG | 0.321820 | 1.1:+4825464 | None:intergenic |
| TGAAATGTTGTTGATGGAAT+TGG | 0.325557 | 1.1:-4825876 | MS.gene24493:CDS |
| GGATGTTCAAGGAAGAGTTT+TGG | 0.344531 | 1.1:-4826215 | MS.gene24493:CDS |
| GAAGATTTCTGTTTCAAAAC+AGG | 0.345157 | 1.1:+4825386 | None:intergenic |
| CATAACTCTTGCATTGTTGT+TGG | 0.349959 | 1.1:+4826328 | None:intergenic |
| GGAAAATGGCGGGGTTGGTT+TGG | 0.353204 | 1.1:-4826086 | MS.gene24493:CDS |
| TGCATTGGTTCAAGTGAGAT+TGG | 0.353424 | 1.1:+4826433 | None:intergenic |
| TGTGTCAAGTTTGAGTCTTT+TGG | 0.359933 | 1.1:-4825828 | MS.gene24493:CDS |
| CAACAACAATGCAAGAGTTA+TGG | 0.362659 | 1.1:-4826327 | MS.gene24493:CDS |
| AAGGATGTTGGATCTATCAT+AGG | 0.371646 | 1.1:+4826381 | None:intergenic |
| AAATTTGAATAATGAGTGTT+TGG | 0.376049 | 1.1:-4825654 | MS.gene24493:CDS |
| TGACCTGTGCAAAGTGTAAC+AGG | 0.377472 | 1.1:+4826406 | None:intergenic |
| GCATCCAGCTAAAGTTTCAT+TGG | 0.383621 | 1.1:-4825957 | MS.gene24493:CDS |
| AGGAAAACAGTGTTGGAAAA+TGG | 0.387358 | 1.1:-4826100 | MS.gene24493:CDS |
| AACAACAATGCAAGAGTTAT+GGG | 0.388335 | 1.1:-4826326 | MS.gene24493:CDS |
| GATAGCACTTTATATATTAG+AGG | 0.391000 | 1.1:-4825630 | MS.gene24493:CDS |
| AGACCAATTAAGATCCCATT+TGG | 0.399608 | 1.1:+4825770 | None:intergenic |
| AAAGGCTGTGGAAGCTGGAT+TGG | 0.406186 | 1.1:-4825447 | MS.gene24493:CDS |
| ATCAACATCTTTACCACATT+AGG | 0.406347 | 1.1:+4825551 | None:intergenic |
| AAGTAGAGTCAAAGCTCTTA+AGG | 0.410312 | 1.1:-4826158 | MS.gene24493:CDS |
| TGAAAACCATTTAAGGATGT+TGG | 0.416261 | 1.1:+4826369 | None:intergenic |
| TTTGGTTGGATTATTGAGAT+TGG | 0.418112 | 1.1:-4825810 | MS.gene24493:CDS |
| ATTTGCATTGTCAATATTGT+GGG | 0.420166 | 1.1:-4825504 | MS.gene24493:CDS |
| ACCACATTAGGTATAATGTT+AGG | 0.421012 | 1.1:+4825563 | None:intergenic |
| GCTTCAAAGGCTGTGGAAGC+TGG | 0.429451 | 1.1:-4825452 | MS.gene24493:CDS |
| CAATTGTTTGAGAGTGTTGT+TGG | 0.445240 | 1.1:+4826288 | None:intergenic |
| ATTGGAAGGAAATGAAACTA+TGG | 0.446042 | 1.1:-4825858 | MS.gene24493:CDS |
| GGTAAAATCTCAATCAATTG+AGG | 0.452311 | 1.1:+4825677 | None:intergenic |
| AGAGATAAGAAACATCCAAA+TGG | 0.458686 | 1.1:-4825785 | MS.gene24493:CDS |
| TCAAACAATTGATCTTTACT+TGG | 0.459813 | 1.1:-4826276 | MS.gene24493:CDS |
| TTGTTTCTCATGTTTGTGCT+AGG | 0.464535 | 1.1:-4826120 | MS.gene24493:CDS |
| AATTTGCATTGTCAATATTG+TGG | 0.484306 | 1.1:-4825505 | MS.gene24493:CDS |
| GTTGTTGGTTGTGAAGCTAT+TGG | 0.487337 | 1.1:-4826031 | MS.gene24493:CDS |
| TGGTTCTCACACAAGTACTT+AGG | 0.487678 | 1.1:-4826256 | MS.gene24493:CDS |
| AATTGTTTGAGAGTGTTGTT+GGG | 0.500960 | 1.1:+4826289 | None:intergenic |
| GAGATAAGAAACATCCAAAT+GGG | 0.501701 | 1.1:-4825784 | MS.gene24493:CDS |
| GAGACACTCAAGAAGGTAAA+GGG | 0.502037 | 1.1:-4826184 | MS.gene24493:CDS |
| ATTGGACATATAAACACATA+AGG | 0.504104 | 1.1:+4826451 | None:intergenic |
| AAACAGTGTTGGAAAATGGC+GGG | 0.518645 | 1.1:-4826096 | MS.gene24493:CDS |
| AAGAAGCTCGAGGATGTTCA+AGG | 0.524563 | 1.1:-4826226 | MS.gene24493:CDS |
| GTGTTGGAAAATGGCGGGGT+TGG | 0.525268 | 1.1:-4826091 | MS.gene24493:CDS |
| ACAACCAATGAAACTTTAGC+TGG | 0.528214 | 1.1:+4825953 | None:intergenic |
| GGAGACACTCAAGAAGGTAA+AGG | 0.529677 | 1.1:-4826185 | MS.gene24493:CDS |
| AGTGTAACAGGCTCTTGCAT+TGG | 0.532871 | 1.1:+4826418 | None:intergenic |
| AAAAGTTCTGTGATAAGCAT+AGG | 0.540706 | 1.1:-4825707 | MS.gene24493:CDS |
| GTTGTTGATATCATGAATGA+AGG | 0.546921 | 1.1:-4825935 | MS.gene24493:CDS |
| ACCTGAAGAATGTGCTTCAA+AGG | 0.554133 | 1.1:-4825465 | MS.gene24493:CDS |
| AGAATGTGCTTCAAAGGCTG+TGG | 0.559930 | 1.1:-4825459 | MS.gene24493:CDS |
| TCCTAACATTATACCTAATG+TGG | 0.566814 | 1.1:-4825564 | MS.gene24493:CDS |
| GTATTGTCAACACTTGAAGA+AGG | 0.568213 | 1.1:-4825608 | MS.gene24493:CDS |
| GAGCCTGTTACACTTTGCAC+AGG | 0.589911 | 1.1:-4826409 | MS.gene24493:CDS |
| TTGTGCTAGGAAAACAGTGT+TGG | 0.603588 | 1.1:-4826107 | MS.gene24493:CDS |
| TATTGTCAACACTTGAAGAA+GGG | 0.604875 | 1.1:-4825607 | MS.gene24493:CDS |
| AACATTGGAGACACTCAAGA+AGG | 0.620353 | 1.1:-4826191 | MS.gene24493:CDS |
| AACAGTGTTGGAAAATGGCG+GGG | 0.621402 | 1.1:-4826095 | MS.gene24493:CDS |
| AACTCAAATCCAAATTCACA+AGG | 0.631042 | 1.1:+4826005 | None:intergenic |
| AAAACAGTGTTGGAAAATGG+CGG | 0.637218 | 1.1:-4826097 | MS.gene24493:CDS |
| AGGAATGAAGAAGAAGCTCG+AGG | 0.684008 | 1.1:-4826236 | MS.gene24493:CDS |
| ATGTTGTTGATGGAATTGGA+AGG | 0.713581 | 1.1:-4825872 | MS.gene24493:CDS |
| TTATTGCTTGTGATTCAGAG+TGG | 0.747357 | 1.1:-4825416 | MS.gene24493:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAACACTCATTATTCAAATT+TGG | + | chr1.1:4826150-4826169 | None:intergenic | 20.0% |
| !! | AAATTTGAATAATGAGTGTT+TGG | - | chr1.1:4826149-4826168 | MS.gene24493:CDS | 20.0% |
| ! | AATTTGCATTGTCAATATTG+TGG | - | chr1.1:4826298-4826317 | MS.gene24493:CDS | 25.0% |
| ! | ATTGATTGAAATGTTGTTGA+TGG | - | chr1.1:4825921-4825940 | MS.gene24493:CDS | 25.0% |
| ! | ATTGGACATATAAACACATA+AGG | + | chr1.1:4825355-4825374 | None:intergenic | 25.0% |
| ! | ATTTGCATTGTCAATATTGT+GGG | - | chr1.1:4826299-4826318 | MS.gene24493:CDS | 25.0% |
| ! | GATAGCACTTTATATATTAG+AGG | - | chr1.1:4826173-4826192 | MS.gene24493:CDS | 25.0% |
| ! | TCAAACAATTGATCTTTACT+TGG | - | chr1.1:4825527-4825546 | MS.gene24493:CDS | 25.0% |
| AAAAGTTCTGTGATAAGCAT+AGG | - | chr1.1:4826096-4826115 | MS.gene24493:CDS | 30.0% | |
| AACAACAATGCAAGAGTTAT+GGG | - | chr1.1:4825477-4825496 | MS.gene24493:CDS | 30.0% | |
| AACTCAAATCCAAATTCACA+AGG | + | chr1.1:4825801-4825820 | None:intergenic | 30.0% | |
| ACCACATTAGGTATAATGTT+AGG | + | chr1.1:4826243-4826262 | None:intergenic | 30.0% | |
| AGAGATAAGAAACATCCAAA+TGG | - | chr1.1:4826018-4826037 | MS.gene24493:CDS | 30.0% | |
| ATAGATCCAACATCCTTAAA+TGG | - | chr1.1:4825428-4825447 | MS.gene24493:CDS | 30.0% | |
| ATCAACATCTTTACCACATT+AGG | + | chr1.1:4826255-4826274 | None:intergenic | 30.0% | |
| ATTGGAAGGAAATGAAACTA+TGG | - | chr1.1:4825945-4825964 | MS.gene24493:CDS | 30.0% | |
| GAAGATTTCTGTTTCAAAAC+AGG | + | chr1.1:4826420-4826439 | None:intergenic | 30.0% | |
| GAGATAAGAAACATCCAAAT+GGG | - | chr1.1:4826019-4826038 | MS.gene24493:CDS | 30.0% | |
| GGTAAAATCTCAATCAATTG+AGG | + | chr1.1:4826129-4826148 | None:intergenic | 30.0% | |
| GTTGTTGATATCATGAATGA+AGG | - | chr1.1:4825868-4825887 | MS.gene24493:CDS | 30.0% | |
| TATTGGTATCCTTGTGAATT+TGG | - | chr1.1:4825789-4825808 | MS.gene24493:CDS | 30.0% | |
| TATTGTCAACACTTGAAGAA+GGG | - | chr1.1:4826196-4826215 | MS.gene24493:CDS | 30.0% | |
| TCCTAACATTATACCTAATG+TGG | - | chr1.1:4826239-4826258 | MS.gene24493:CDS | 30.0% | |
| TGAAAACCATTTAAGGATGT+TGG | + | chr1.1:4825437-4825456 | None:intergenic | 30.0% | |
| TTTGGTTGGATTATTGAGAT+TGG | - | chr1.1:4825993-4826012 | MS.gene24493:CDS | 30.0% | |
| ! | ATCCTTAAATGGTTTTCACT+TGG | - | chr1.1:4825439-4825458 | MS.gene24493:CDS | 30.0% |
| ! | TCTTTTACTTCACATGTTGT+TGG | - | chr1.1:4825757-4825776 | MS.gene24493:CDS | 30.0% |
| ! | TGAAATGTTGTTGATGGAAT+TGG | - | chr1.1:4825927-4825946 | MS.gene24493:CDS | 30.0% |
| !! | AATTGTTTGAGAGTGTTGTT+GGG | + | chr1.1:4825517-4825536 | None:intergenic | 30.0% |
| AACACTTGAAGAAGGGAAAT+TGG | - | chr1.1:4826203-4826222 | MS.gene24493:CDS | 35.0% | |
| AAGGATGTTGGATCTATCAT+AGG | + | chr1.1:4825425-4825444 | None:intergenic | 35.0% | |
| AAGTAGAGTCAAAGCTCTTA+AGG | - | chr1.1:4825645-4825664 | MS.gene24493:CDS | 35.0% | |
| ACAACCAATGAAACTTTAGC+TGG | + | chr1.1:4825853-4825872 | None:intergenic | 35.0% | |
| AGACCAATTAAGATCCCATT+TGG | + | chr1.1:4826036-4826055 | None:intergenic | 35.0% | |
| CAACAACAATGCAAGAGTTA+TGG | - | chr1.1:4825476-4825495 | MS.gene24493:CDS | 35.0% | |
| CATAACTCTTGCATTGTTGT+TGG | + | chr1.1:4825478-4825497 | None:intergenic | 35.0% | |
| CATCCAAATGGGATCTTAAT+TGG | - | chr1.1:4826030-4826049 | MS.gene24493:CDS | 35.0% | |
| GACCAAGTGAAAACCATTTA+AGG | + | chr1.1:4825444-4825463 | None:intergenic | 35.0% | |
| GTATTGTCAACACTTGAAGA+AGG | - | chr1.1:4826195-4826214 | MS.gene24493:CDS | 35.0% | |
| TCAAAGCTCTTAAGGATCTT+AGG | - | chr1.1:4825653-4825672 | MS.gene24493:CDS | 35.0% | |
| TTATTGCTTGTGATTCAGAG+TGG | - | chr1.1:4826387-4826406 | MS.gene24493:CDS | 35.0% | |
| ! | AAAACAGTGTTGGAAAATGG+CGG | - | chr1.1:4825706-4825725 | MS.gene24493:CDS | 35.0% |
| ! | AGGAAAACAGTGTTGGAAAA+TGG | - | chr1.1:4825703-4825722 | MS.gene24493:CDS | 35.0% |
| ! | ATGTTGTTGATGGAATTGGA+AGG | - | chr1.1:4825931-4825950 | MS.gene24493:CDS | 35.0% |
| ! | TCAAGTTTGAGTCTTTTGGT+TGG | - | chr1.1:4825979-4825998 | MS.gene24493:CDS | 35.0% |
| ! | TGTGTCAAGTTTGAGTCTTT+TGG | - | chr1.1:4825975-4825994 | MS.gene24493:CDS | 35.0% |
| ! | TTGTTTCTCATGTTTGTGCT+AGG | - | chr1.1:4825683-4825702 | MS.gene24493:CDS | 35.0% |
| !! | CAATTGTTTGAGAGTGTTGT+TGG | + | chr1.1:4825518-4825537 | None:intergenic | 35.0% |
| !! | GGTTTGGTTTGTTCTTTGTT+AGG | - | chr1.1:4825733-4825752 | MS.gene24493:CDS | 35.0% |
| !!! | AGGAAGAGTTTTGGAAACAT+TGG | - | chr1.1:4825597-4825616 | MS.gene24493:CDS | 35.0% |
| AACATTGGAGACACTCAAGA+AGG | - | chr1.1:4825612-4825631 | MS.gene24493:CDS | 40.0% | |
| ACCTGAAGAATGTGCTTCAA+AGG | - | chr1.1:4826338-4826357 | MS.gene24493:CDS | 40.0% | |
| GAGACACTCAAGAAGGTAAA+GGG | - | chr1.1:4825619-4825638 | MS.gene24493:CDS | 40.0% | |
| GCATCCAGCTAAAGTTTCAT+TGG | - | chr1.1:4825846-4825865 | MS.gene24493:CDS | 40.0% | |
| TGGTTCTCACACAAGTACTT+AGG | - | chr1.1:4825547-4825566 | MS.gene24493:CDS | 40.0% | |
| TTGTGCTAGGAAAACAGTGT+TGG | - | chr1.1:4825696-4825715 | MS.gene24493:CDS | 40.0% | |
| ! | AAACAGTGTTGGAAAATGGC+GGG | - | chr1.1:4825707-4825726 | MS.gene24493:CDS | 40.0% |
| ! | GGATGTTCAAGGAAGAGTTT+TGG | - | chr1.1:4825588-4825607 | MS.gene24493:CDS | 40.0% |
| ! | GTTGTTGGTTGTGAAGCTAT+TGG | - | chr1.1:4825772-4825791 | MS.gene24493:CDS | 40.0% |
| !! | TGCATTGGTTCAAGTGAGAT+TGG | + | chr1.1:4825373-4825392 | None:intergenic | 40.0% |
| AAGAAGCTCGAGGATGTTCA+AGG | - | chr1.1:4825577-4825596 | MS.gene24493:CDS | 45.0% | |
| AGAATGTGCTTCAAAGGCTG+TGG | - | chr1.1:4826344-4826363 | MS.gene24493:CDS | 45.0% | |
| AGGAATGAAGAAGAAGCTCG+AGG | - | chr1.1:4825567-4825586 | MS.gene24493:CDS | 45.0% | |
| AGTGTAACAGGCTCTTGCAT+TGG | + | chr1.1:4825388-4825407 | None:intergenic | 45.0% | |
| GGAGACACTCAAGAAGGTAA+AGG | - | chr1.1:4825618-4825637 | MS.gene24493:CDS | 45.0% | |
| TGACCTGTGCAAAGTGTAAC+AGG | + | chr1.1:4825400-4825419 | None:intergenic | 45.0% | |
| ! | AACAGTGTTGGAAAATGGCG+GGG | - | chr1.1:4825708-4825727 | MS.gene24493:CDS | 45.0% |
| !! | GCCTTTGAAGCACATTCTTC+AGG | + | chr1.1:4826342-4826361 | None:intergenic | 45.0% |
| AAAGGCTGTGGAAGCTGGAT+TGG | - | chr1.1:4826356-4826375 | MS.gene24493:CDS | 50.0% | |
| GAGCCTGTTACACTTTGCAC+AGG | - | chr1.1:4825394-4825413 | MS.gene24493:CDS | 50.0% | |
| GCTTCAAAGGCTGTGGAAGC+TGG | - | chr1.1:4826351-4826370 | MS.gene24493:CDS | 55.0% | |
| ! | GTGTTGGAAAATGGCGGGGT+TGG | - | chr1.1:4825712-4825731 | MS.gene24493:CDS | 55.0% |
| !! | GGAAAATGGCGGGGTTGGTT+TGG | - | chr1.1:4825717-4825736 | MS.gene24493:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 4825304 | 4826521 | 4825304 | ID=MS.gene24493 |
| chr1.1 | mRNA | 4825304 | 4826521 | 4825304 | ID=MS.gene24493.t1;Parent=MS.gene24493 |
| chr1.1 | exon | 4825304 | 4826521 | 4825304 | ID=MS.gene24493.t1.exon1;Parent=MS.gene24493.t1 |
| chr1.1 | CDS | 4825304 | 4826521 | 4825304 | ID=cds.MS.gene24493.t1;Parent=MS.gene24493.t1 |
| Gene Sequence |
| Protein sequence |
