Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28231.t1 | XP_003599006.2 | 94.9 | 157 | 3 | 1 | 1 | 157 | 38 | 189 | 1.40E-34 | 156 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28231.t1 | G7IZC1 | 94.9 | 157 | 3 | 1 | 1 | 157 | 38 | 189 | 1.0e-34 | 156.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene28231 | 0.827068 | 1.92E-54 | -1.69E-46 |
| MS.gene049171 | MS.gene28231 | 0.818518 | 1.88E-52 | -1.69E-46 |
| MS.gene049427 | MS.gene28231 | 0.816687 | 4.86E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene28231 | 0.863246 | 2.85E-64 | -1.69E-46 |
| MS.gene049805 | MS.gene28231 | 0.842792 | 2.08E-58 | -1.69E-46 |
| MS.gene050400 | MS.gene28231 | 0.80397 | 2.70E-49 | -1.69E-46 |
| MS.gene050593 | MS.gene28231 | 0.86903 | 4.20E-66 | -1.69E-46 |
| MS.gene050670 | MS.gene28231 | 0.876038 | 1.92E-68 | -1.69E-46 |
| MS.gene050747 | MS.gene28231 | 0.825793 | 3.86E-54 | -1.69E-46 |
| MS.gene050767 | MS.gene28231 | 0.80189 | 7.27E-49 | -1.69E-46 |
| MS.gene050770 | MS.gene28231 | 0.804641 | 1.96E-49 | -1.69E-46 |
| MS.gene050772 | MS.gene28231 | 0.842421 | 2.61E-58 | -1.69E-46 |
| MS.gene05080 | MS.gene28231 | 0.804932 | 1.70E-49 | -1.69E-46 |
| MS.gene050950 | MS.gene28231 | 0.822032 | 2.94E-53 | -1.69E-46 |
| MS.gene05105 | MS.gene28231 | 0.875479 | 2.98E-68 | -1.69E-46 |
| MS.gene051387 | MS.gene28231 | 0.849058 | 4.12E-60 | -1.69E-46 |
| MS.gene051438 | MS.gene28231 | 0.808678 | 2.75E-50 | -1.69E-46 |
| MS.gene051525 | MS.gene28231 | 0.808644 | 2.80E-50 | -1.69E-46 |
| MS.gene051582 | MS.gene28231 | 0.845028 | 5.24E-59 | -1.69E-46 |
| MS.gene051666 | MS.gene28231 | 0.84076 | 7.16E-58 | -1.69E-46 |
| MS.gene052188 | MS.gene28231 | 0.814228 | 1.71E-51 | -1.69E-46 |
| MS.gene052310 | MS.gene28231 | 0.838426 | 2.90E-57 | -1.69E-46 |
| MS.gene052322 | MS.gene28231 | 0.84917 | 3.84E-60 | -1.69E-46 |
| MS.gene052414 | MS.gene28231 | 0.806937 | 6.45E-50 | -1.69E-46 |
| MS.gene052421 | MS.gene28231 | 0.845271 | 4.51E-59 | -1.69E-46 |
| MS.gene052481 | MS.gene28231 | 0.816374 | 5.72E-52 | -1.69E-46 |
| MS.gene052484 | MS.gene28231 | 0.819867 | 9.27E-53 | -1.69E-46 |
| MS.gene052485 | MS.gene28231 | 0.80601 | 1.01E-49 | -1.69E-46 |
| MS.gene052501 | MS.gene28231 | 0.806504 | 7.97E-50 | -1.69E-46 |
| MS.gene052505 | MS.gene28231 | 0.806972 | 6.34E-50 | -1.69E-46 |
| MS.gene052982 | MS.gene28231 | 0.821001 | 5.09E-53 | -1.69E-46 |
| MS.gene053009 | MS.gene28231 | 0.823303 | 1.49E-53 | -1.69E-46 |
| MS.gene053103 | MS.gene28231 | 0.833837 | 4.24E-56 | -1.69E-46 |
| MS.gene053104 | MS.gene28231 | 0.830387 | 3.02E-55 | -1.69E-46 |
| MS.gene053207 | MS.gene28231 | 0.829265 | 5.67E-55 | -1.69E-46 |
| MS.gene053209 | MS.gene28231 | 0.814318 | 1.64E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene28231 | 0.811628 | 6.37E-51 | -1.69E-46 |
| MS.gene053286 | MS.gene28231 | 0.800459 | 1.43E-48 | -1.69E-46 |
| MS.gene053322 | MS.gene28231 | 0.80222 | 6.22E-49 | -1.69E-46 |
| MS.gene053449 | MS.gene28231 | 0.816376 | 5.71E-52 | -1.69E-46 |
| MS.gene053574 | MS.gene28231 | 0.826068 | 3.32E-54 | -1.69E-46 |
| MS.gene053912 | MS.gene28231 | 0.813426 | 2.57E-51 | -1.69E-46 |
| MS.gene053916 | MS.gene28231 | 0.81054 | 1.10E-50 | -1.69E-46 |
| MS.gene054376 | MS.gene28231 | 0.812192 | 4.80E-51 | -1.69E-46 |
| MS.gene054600 | MS.gene28231 | 0.800088 | 1.70E-48 | -1.69E-46 |
| MS.gene054927 | MS.gene28231 | 0.833824 | 4.27E-56 | -1.69E-46 |
| MS.gene05505 | MS.gene28231 | 0.818314 | 2.09E-52 | -1.69E-46 |
| MS.gene055116 | MS.gene28231 | 0.867522 | 1.29E-65 | -1.69E-46 |
| MS.gene055289 | MS.gene28231 | 0.805817 | 1.11E-49 | -1.69E-46 |
| MS.gene055722 | MS.gene28231 | 0.808215 | 3.46E-50 | -1.69E-46 |
| MS.gene05592 | MS.gene28231 | 0.841406 | 4.85E-58 | -1.69E-46 |
| MS.gene056407 | MS.gene28231 | 0.838593 | 2.62E-57 | -1.69E-46 |
| MS.gene056511 | MS.gene28231 | 0.823911 | 1.07E-53 | -1.69E-46 |
| MS.gene05664 | MS.gene28231 | 0.83639 | 9.62E-57 | -1.69E-46 |
| MS.gene05702 | MS.gene28231 | 0.825976 | 3.49E-54 | -1.69E-46 |
| MS.gene057076 | MS.gene28231 | 0.801799 | 7.59E-49 | -1.69E-46 |
| MS.gene057124 | MS.gene28231 | 0.828116 | 1.08E-54 | -1.69E-46 |
| MS.gene057129 | MS.gene28231 | 0.816172 | 6.34E-52 | -1.69E-46 |
| MS.gene057331 | MS.gene28231 | 0.857379 | 1.70E-62 | -1.69E-46 |
| MS.gene057416 | MS.gene28231 | 0.86309 | 3.19E-64 | -1.69E-46 |
| MS.gene057658 | MS.gene28231 | 0.809196 | 2.13E-50 | -1.69E-46 |
| MS.gene057734 | MS.gene28231 | 0.828113 | 1.08E-54 | -1.69E-46 |
| MS.gene058019 | MS.gene28231 | 0.875941 | 2.07E-68 | -1.69E-46 |
| MS.gene058082 | MS.gene28231 | 0.800634 | 1.31E-48 | -1.69E-46 |
| MS.gene058293 | MS.gene28231 | 0.814294 | 1.66E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene28231 | 0.813043 | 3.12E-51 | -1.69E-46 |
| MS.gene058544 | MS.gene28231 | 0.813188 | 2.91E-51 | -1.69E-46 |
| MS.gene058700 | MS.gene28231 | 0.82857 | 8.36E-55 | -1.69E-46 |
| MS.gene058838 | MS.gene28231 | 0.811559 | 6.59E-51 | -1.69E-46 |
| MS.gene059455 | MS.gene28231 | 0.833116 | 6.42E-56 | -1.69E-46 |
| MS.gene059536 | MS.gene28231 | 0.818068 | 2.38E-52 | -1.69E-46 |
| MS.gene059676 | MS.gene28231 | 0.810837 | 9.45E-51 | -1.69E-46 |
| MS.gene059688 | MS.gene28231 | 0.855362 | 6.64E-62 | -1.69E-46 |
| MS.gene059692 | MS.gene28231 | 0.845822 | 3.20E-59 | -1.69E-46 |
| MS.gene059695 | MS.gene28231 | 0.852266 | 5.17E-61 | -1.69E-46 |
| MS.gene059711 | MS.gene28231 | 0.800304 | 1.53E-48 | -1.69E-46 |
| MS.gene059718 | MS.gene28231 | 0.802974 | 4.35E-49 | -1.69E-46 |
| MS.gene059960 | MS.gene28231 | 0.814159 | 1.78E-51 | -1.69E-46 |
| MS.gene060372 | MS.gene28231 | 0.800703 | 1.27E-48 | -1.69E-46 |
| MS.gene060403 | MS.gene28231 | 0.863417 | 2.53E-64 | -1.69E-46 |
| MS.gene060804 | MS.gene28231 | 0.819709 | 1.01E-52 | -1.69E-46 |
| MS.gene060835 | MS.gene28231 | 0.844173 | 8.91E-59 | -1.69E-46 |
| MS.gene060837 | MS.gene28231 | 0.811123 | 8.20E-51 | -1.69E-46 |
| MS.gene06092 | MS.gene28231 | 0.83528 | 1.84E-56 | -1.69E-46 |
| MS.gene061150 | MS.gene28231 | 0.809 | 2.35E-50 | -1.69E-46 |
| MS.gene061154 | MS.gene28231 | 0.826746 | 2.29E-54 | -1.69E-46 |
| MS.gene061200 | MS.gene28231 | 0.809428 | 1.90E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28231.t1 | MTR_3g026020 | 95.541 | 157 | 2 | 1 | 1 | 157 | 38 | 189 | 1.67e-99 | 284 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene28231.t1 | AT5G08050 | 64.103 | 156 | 41 | 2 | 1 | 155 | 15 | 156 | 2.05e-50 | 159 |
Find 36 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTCGAGGTTGGATTAC+AGG | 0.269782 | 3.3:+17839533 | MS.gene28231:CDS |
| GAGACAGAAGGAACTGGTTT+GGG | 0.333662 | 3.3:-17838012 | None:intergenic |
| TGTGTTGTTGGTGGTTCTGC+TGG | 0.362863 | 3.3:+17839573 | MS.gene28231:CDS |
| TAAAACTGTAGCTTCTAAAA+AGG | 0.383526 | 3.3:+17838035 | MS.gene28231:CDS |
| AGAGACAGAAGGAACTGGTT+TGG | 0.399810 | 3.3:-17838013 | None:intergenic |
| TAGCGATAATCCTGCTTTCT+CGG | 0.404741 | 3.3:-17839355 | None:intergenic |
| CATTCTTGTGAGGAGTTTAA+CGG | 0.405852 | 3.3:-17839280 | None:intergenic |
| GTTGCTTTGATCTGTGTTGT+TGG | 0.414772 | 3.3:+17839561 | MS.gene28231:CDS |
| TGATAAAACACCAAGTTCTT+CGG | 0.420793 | 3.3:-17839412 | None:intergenic |
| TAAACCTGCTTTCTCTGCCT+TGG | 0.422974 | 3.3:-17839322 | None:intergenic |
| CTCTCAAAAGCCGAAGAACT+TGG | 0.423172 | 3.3:+17839402 | MS.gene28231:CDS |
| AACCTCGACAACATTATCTT+CGG | 0.427394 | 3.3:-17839523 | None:intergenic |
| CGTTAAACTCCTCACAAGAA+TGG | 0.467112 | 3.3:+17839281 | MS.gene28231:CDS |
| AAGAGTGATCCTGGAGTTGA+TGG | 0.471176 | 3.3:-17839447 | None:intergenic |
| CTATCAACAATAGAGAAACT+TGG | 0.493062 | 3.3:+17839375 | MS.gene28231:CDS |
| CTGAGTGTGAAGAGTGATCC+TGG | 0.494258 | 3.3:-17839456 | None:intergenic |
| ACCTCGACAACATTATCTTC+GGG | 0.509562 | 3.3:-17839522 | None:intergenic |
| GAAGATAATGTTGTCGAGGT+TGG | 0.509847 | 3.3:+17839525 | MS.gene28231:CDS |
| AACTGGTTTGGGAGTAGCCA+TGG | 0.510271 | 3.3:-17838001 | None:intergenic |
| TTATCAGCCGCCGAGAAAGC+AGG | 0.520670 | 3.3:+17839345 | MS.gene28231:CDS |
| GCTTTGATCTGTGTTGTTGG+TGG | 0.528999 | 3.3:+17839564 | MS.gene28231:CDS |
| CGAGGTTGGATTACAGGCTG+TGG | 0.533900 | 3.3:+17839539 | MS.gene28231:CDS |
| AATTCAACTGTATTCCCACT+TGG | 0.537612 | 3.3:+17839222 | MS.gene28231:CDS |
| TCCTAGGTTGTTCCCCAAGT+GGG | 0.538069 | 3.3:-17839236 | None:intergenic |
| TTAACCAAGGCAGAGAAAGC+AGG | 0.541705 | 3.3:+17839318 | MS.gene28231:CDS |
| GCTACTGATCCATCAACTCC+AGG | 0.551246 | 3.3:+17839438 | MS.gene28231:CDS |
| ATTCAACTGTATTCCCACTT+GGG | 0.553323 | 3.3:+17839223 | MS.gene28231:CDS |
| GTCGATGTTACAGCACTCCT+AGG | 0.557906 | 3.3:-17839252 | None:intergenic |
| TCAGTTGTTCCATTCTTGTG+AGG | 0.560445 | 3.3:-17839290 | None:intergenic |
| TCCCACTTGGGGAACAACCT+AGG | 0.596244 | 3.3:+17839235 | MS.gene28231:CDS |
| TTCAACTGTATTCCCACTTG+GGG | 0.603934 | 3.3:+17839224 | MS.gene28231:CDS |
| TCCCGAAGATAATGTTGTCG+AGG | 0.604575 | 3.3:+17839521 | MS.gene28231:CDS |
| GGAACAAGATAAACAAACAA+AGG | 0.614999 | 3.3:-17839501 | None:intergenic |
| CTCCTAGGTTGTTCCCCAAG+TGG | 0.623775 | 3.3:-17839237 | None:intergenic |
| CGATAATCCTGCTTTCTCGG+CGG | 0.695629 | 3.3:-17839352 | None:intergenic |
| ACAACTGAGACTGTTAACCA+AGG | 0.730927 | 3.3:+17839305 | MS.gene28231:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAACAAGTAAGAATTATA+TGG | - | chr3.3:17838078-17838097 | None:intergenic | 15.0% |
| !! | ATAAAGTAAAGTTTCTATGT+AGG | - | chr3.3:17838601-17838620 | None:intergenic | 20.0% |
| !! | ATCCTTTCTCATAATTAAAT+TGG | - | chr3.3:17838188-17838207 | None:intergenic | 20.0% |
| !! | TACCAATTTAATTATGAGAA+AGG | + | chr3.3:17838183-17838202 | MS.gene28231:intron | 20.0% |
| !!! | ATAAACTGTAATTTGTCATA+GGG | + | chr3.3:17838327-17838346 | MS.gene28231:intron | 20.0% |
| !!! | ATATTTGTTTTCCTTTGTTT+TGG | + | chr3.3:17838971-17838990 | MS.gene28231:intron | 20.0% |
| !!! | TTATTTTATTTTCTGCAAGT+TGG | - | chr3.3:17839622-17839641 | None:intergenic | 20.0% |
| ! | AATTTACATAATGCCATGTT+TGG | - | chr3.3:17838759-17838778 | None:intergenic | 25.0% |
| ! | ATGGCATTATGTAAATTCTA+CGG | + | chr3.3:17838762-17838781 | MS.gene28231:intron | 25.0% |
| ! | ATTACAGTTTATGTATACCT+AGG | - | chr3.3:17838319-17838338 | None:intergenic | 25.0% |
| ! | ATTGAAAACGTAAAATAACC+AGG | - | chr3.3:17838564-17838583 | None:intergenic | 25.0% |
| ! | CATAGAAACTTTACTTTATC+AGG | + | chr3.3:17838602-17838621 | MS.gene28231:intron | 25.0% |
| ! | TATACTGTAAAAAAATCACC+TGG | + | chr3.3:17838543-17838562 | MS.gene28231:intron | 25.0% |
| !! | CATAAACTGTAATTTGTCAT+AGG | + | chr3.3:17838326-17838345 | MS.gene28231:intron | 25.0% |
| !! | TAAAACTGTAGCTTCTAAAA+AGG | + | chr3.3:17838035-17838054 | MS.gene28231:CDS | 25.0% |
| !! | TAAACTGTAATTTGTCATAG+GGG | + | chr3.3:17838328-17838347 | MS.gene28231:intron | 25.0% |
| !! | TGGAATCTTTAGGAAAAAAA+AGG | + | chr3.3:17838517-17838536 | MS.gene28231:intron | 25.0% |
| !! | TTTAATGCTCTTTGATGATA+TGG | + | chr3.3:17838286-17838305 | MS.gene28231:intron | 25.0% |
| !!! | AGCTTTGTTTTACTTCTTTT+AGG | + | chr3.3:17839477-17839496 | MS.gene28231:CDS | 25.0% |
| !!! | TGGAAATGCTTTGTTTAAAT+AGG | - | chr3.3:17838739-17838758 | None:intergenic | 25.0% |
| ACCATATGAGTTGTACTTAT+CGG | - | chr3.3:17838402-17838421 | None:intergenic | 30.0% | |
| AGTACAACTCATATGGTAAA+AGG | + | chr3.3:17838405-17838424 | MS.gene28231:intron | 30.0% | |
| CCACTTTAATAAACGGTTTA+TGG | - | chr3.3:17839120-17839139 | None:intergenic | 30.0% | |
| CCATAAACCGTTTATTAAAG+TGG | + | chr3.3:17839117-17839136 | MS.gene28231:intron | 30.0% | |
| CTATCAACAATAGAGAAACT+TGG | + | chr3.3:17839375-17839394 | MS.gene28231:CDS | 30.0% | |
| GGAACAAGATAAACAAACAA+AGG | - | chr3.3:17839504-17839523 | None:intergenic | 30.0% | |
| GGTCTGATAAGTACTAAAAA+TGG | + | chr3.3:17838660-17838679 | MS.gene28231:intron | 30.0% | |
| TGATAAAACACCAAGTTCTT+CGG | - | chr3.3:17839415-17839434 | None:intergenic | 30.0% | |
| TGTTTGTTCTACCAAAACAA+AGG | - | chr3.3:17838985-17839004 | None:intergenic | 30.0% | |
| TTATGCAATATTATGCTGTG+TGG | + | chr3.3:17838135-17838154 | MS.gene28231:intron | 30.0% | |
| ! | AAACAAAGCATTTCCAAACA+TGG | + | chr3.3:17838743-17838762 | MS.gene28231:intron | 30.0% |
| ! | ACAGTCATTGTTATTGTCAT+AGG | - | chr3.3:17839028-17839047 | None:intergenic | 30.0% |
| ! | CTCTTTGATGATATGGTATA+TGG | + | chr3.3:17838293-17838312 | MS.gene28231:intron | 30.0% |
| !! | ACTTTATCAGGCTTTTAAGT+AGG | + | chr3.3:17838614-17838633 | MS.gene28231:intron | 30.0% |
| !! | ATGCTTTGTTTAAATAGGTC+TGG | - | chr3.3:17838734-17838753 | None:intergenic | 30.0% |
| !! | TTTCTACGGTAATTTTCAAG+TGG | + | chr3.3:17839087-17839106 | MS.gene28231:intron | 30.0% |
| AACCTCGACAACATTATCTT+CGG | - | chr3.3:17839526-17839545 | None:intergenic | 35.0% | |
| AATATTATGCTGTGTGGAAC+TGG | + | chr3.3:17838141-17838160 | MS.gene28231:intron | 35.0% | |
| AATTCAACTGTATTCCCACT+TGG | + | chr3.3:17839222-17839241 | MS.gene28231:CDS | 35.0% | |
| ACTAGTTCGAAAAGACATCT+GGG | + | chr3.3:17838919-17838938 | MS.gene28231:intron | 35.0% | |
| ATTCAACTGTATTCCCACTT+GGG | + | chr3.3:17839223-17839242 | MS.gene28231:CDS | 35.0% | |
| CATTCTTGTGAGGAGTTTAA+CGG | - | chr3.3:17839283-17839302 | None:intergenic | 35.0% | |
| CGGTAGACCACTTTAATAAA+CGG | - | chr3.3:17839127-17839146 | None:intergenic | 35.0% | |
| CTTTGTCTTAATGAGTGAGA+CGG | + | chr3.3:17838883-17838902 | MS.gene28231:intron | 35.0% | |
| GCATTATGTAAATTCTACGG+TGG | + | chr3.3:17838765-17838784 | MS.gene28231:intron | 35.0% | |
| GTACTATGAGTCGTAATTTC+AGG | - | chr3.3:17838835-17838854 | None:intergenic | 35.0% | |
| TACTAGTTCGAAAAGACATC+TGG | + | chr3.3:17838918-17838937 | MS.gene28231:intron | 35.0% | |
| TCCGATAAGTACAACTCATA+TGG | + | chr3.3:17838398-17838417 | MS.gene28231:intron | 35.0% | |
| TCTCACTCATTAAGACAAAG+AGG | - | chr3.3:17838883-17838902 | None:intergenic | 35.0% | |
| ! | AACTTTTGTCCCCAAAAAAC+AGG | - | chr3.3:17839159-17839178 | None:intergenic | 35.0% |
| ! | TACTTATCAGACCTTTTCGA+AGG | - | chr3.3:17838653-17838672 | None:intergenic | 35.0% |
| !!! | TGTTTTTTGGGGACAAAAGT+TGG | + | chr3.3:17839158-17839177 | MS.gene28231:intron | 35.0% |
| AATACGTCAGACCTTCGAAA+AGG | + | chr3.3:17838639-17838658 | MS.gene28231:intron | 40.0% | |
| ACAACTGAGACTGTTAACCA+AGG | + | chr3.3:17839305-17839324 | MS.gene28231:CDS | 40.0% | |
| ACATTTGATATGCTGAGACG+CGG | + | chr3.3:17838436-17838455 | MS.gene28231:intron | 40.0% | |
| ACCTCGACAACATTATCTTC+GGG | - | chr3.3:17839525-17839544 | None:intergenic | 40.0% | |
| ACTCATATGGTAAAAGGCTG+AGG | + | chr3.3:17838411-17838430 | MS.gene28231:intron | 40.0% | |
| CGTTAAACTCCTCACAAGAA+TGG | + | chr3.3:17839281-17839300 | MS.gene28231:CDS | 40.0% | |
| CTCATATGGTAAAAGGCTGA+GGG | + | chr3.3:17838412-17838431 | MS.gene28231:intron | 40.0% | |
| GAAGATAATGTTGTCGAGGT+TGG | + | chr3.3:17839525-17839544 | MS.gene28231:CDS | 40.0% | |
| GATGATATGGTATATGGCCT+AGG | + | chr3.3:17838299-17838318 | MS.gene28231:intron | 40.0% | |
| TAGCGATAATCCTGCTTTCT+CGG | - | chr3.3:17839358-17839377 | None:intergenic | 40.0% | |
| TCAGTTGTTCCATTCTTGTG+AGG | - | chr3.3:17839293-17839312 | None:intergenic | 40.0% | |
| TCATATGGTAAAAGGCTGAG+GGG | + | chr3.3:17838413-17838432 | MS.gene28231:intron | 40.0% | |
| TTCAACTGTATTCCCACTTG+GGG | + | chr3.3:17839224-17839243 | MS.gene28231:CDS | 40.0% | |
| TTCTACTTCCAAGAGTGACA+TGG | + | chr3.3:17839052-17839071 | MS.gene28231:intron | 40.0% | |
| ! | GTTGCTTTGATCTGTGTTGT+TGG | + | chr3.3:17839561-17839580 | MS.gene28231:CDS | 40.0% |
| ! | GTTTTGTCGCTGGAATCTTT+AGG | + | chr3.3:17838507-17838526 | MS.gene28231:intron | 40.0% |
| ! | TTTCAAGTGTTAATCCACCG+TGG | - | chr3.3:17838808-17838827 | None:intergenic | 40.0% |
| !! | CAAAAAACAGGCTGGTTCTA+CGG | - | chr3.3:17839147-17839166 | None:intergenic | 40.0% |
| !!! | CTACGGTAATTTTCAAGTGG+TGG | + | chr3.3:17839090-17839109 | MS.gene28231:intron | 40.0% |
| !!! | GCTACAGTTTTAGAGACAGA+AGG | - | chr3.3:17838027-17838046 | None:intergenic | 40.0% |
| !!! | GTAGAACCAGCCTGTTTTTT+GGG | + | chr3.3:17839146-17839165 | MS.gene28231:intron | 40.0% |
| !!! | GTTTTAGAGACAGAAGGAAC+TGG | - | chr3.3:17838021-17838040 | None:intergenic | 40.0% |
| !!! | TAGAACCAGCCTGTTTTTTG+GGG | + | chr3.3:17839147-17839166 | MS.gene28231:intron | 40.0% |
| AAGAGTGACATGGTTGTCGT+CGG | + | chr3.3:17839062-17839081 | MS.gene28231:intron | 45.0% | |
| AAGAGTGATCCTGGAGTTGA+TGG | - | chr3.3:17839450-17839469 | None:intergenic | 45.0% | |
| AGAGACAGAAGGAACTGGTT+TGG | - | chr3.3:17838016-17838035 | None:intergenic | 45.0% | |
| CATTTGATATGCTGAGACGC+GGG | + | chr3.3:17838437-17838456 | MS.gene28231:intron | 45.0% | |
| CGACAAAACTCACACTCACA+CGG | - | chr3.3:17838496-17838515 | None:intergenic | 45.0% | |
| CTCTCAAAAGCCGAAGAACT+TGG | + | chr3.3:17839402-17839421 | MS.gene28231:CDS | 45.0% | |
| TAAACCTGCTTTCTCTGCCT+TGG | - | chr3.3:17839325-17839344 | None:intergenic | 45.0% | |
| TCCCGAAGATAATGTTGTCG+AGG | + | chr3.3:17839521-17839540 | MS.gene28231:CDS | 45.0% | |
| TGTTGTCGAGGTTGGATTAC+AGG | + | chr3.3:17839533-17839552 | MS.gene28231:CDS | 45.0% | |
| TTAACCAAGGCAGAGAAAGC+AGG | + | chr3.3:17839318-17839337 | MS.gene28231:CDS | 45.0% | |
| TTTGTCCCCAAAAAACAGGC+TGG | - | chr3.3:17839155-17839174 | None:intergenic | 45.0% | |
| ! | ACACGGACGAAGTGTTAAGT+AGG | - | chr3.3:17838479-17838498 | None:intergenic | 45.0% |
| ! | CAAGTTCTTCGGCTTTTGAG+AGG | - | chr3.3:17839404-17839423 | None:intergenic | 45.0% |
| ! | CACGGACGAAGTGTTAAGTA+GGG | - | chr3.3:17838478-17838497 | None:intergenic | 45.0% |
| ! | GAGACAGAAGGAACTGGTTT+GGG | - | chr3.3:17838015-17838034 | None:intergenic | 45.0% |
| ! | GCTTTGATCTGTGTTGTTGG+TGG | + | chr3.3:17839564-17839583 | MS.gene28231:CDS | 45.0% |
| ! | GGTTGTCGTCGGTATTTCTA+CGG | + | chr3.3:17839073-17839092 | MS.gene28231:intron | 45.0% |
| !!! | CGTAGAACCAGCCTGTTTTT+TGG | + | chr3.3:17839145-17839164 | MS.gene28231:intron | 45.0% |
| CGATAATCCTGCTTTCTCGG+CGG | - | chr3.3:17839355-17839374 | None:intergenic | 50.0% | |
| CTGAGTGTGAAGAGTGATCC+TGG | - | chr3.3:17839459-17839478 | None:intergenic | 50.0% | |
| GACGACAACCATGTCACTCT+TGG | - | chr3.3:17839063-17839082 | None:intergenic | 50.0% | |
| GCTACTGATCCATCAACTCC+AGG | + | chr3.3:17839438-17839457 | MS.gene28231:CDS | 50.0% | |
| GTCGATGTTACAGCACTCCT+AGG | - | chr3.3:17839255-17839274 | None:intergenic | 50.0% | |
| TCCACCTAGATAGGTGTCCA+CGG | + | chr3.3:17838788-17838807 | MS.gene28231:intron | 50.0% | |
| TCCTAGGTTGTTCCCCAAGT+GGG | - | chr3.3:17839239-17839258 | None:intergenic | 50.0% | |
| !! | GTGAGTGTGAGTTTTGTCGC+TGG | + | chr3.3:17838497-17838516 | MS.gene28231:intron | 50.0% |
| !! | TGTGTTGTTGGTGGTTCTGC+TGG | + | chr3.3:17839573-17839592 | MS.gene28231:CDS | 50.0% |
| ACCGTGGACACCTATCTAGG+TGG | - | chr3.3:17838792-17838811 | None:intergenic | 55.0% | |
| ACCTAGATAGGTGTCCACGG+TGG | + | chr3.3:17838791-17838810 | MS.gene28231:intron | 55.0% | |
| CGAGGTTGGATTACAGGCTG+TGG | + | chr3.3:17839539-17839558 | MS.gene28231:CDS | 55.0% | |
| CTACGGTGGTCCACCTAGAT+AGG | + | chr3.3:17838779-17838798 | MS.gene28231:intron | 55.0% | |
| CTCCTAGGTTGTTCCCCAAG+TGG | - | chr3.3:17839240-17839259 | None:intergenic | 55.0% | |
| GAGTGAGACGGTGACTCGAT+TGG | + | chr3.3:17838895-17838914 | MS.gene28231:intron | 55.0% | |
| TCCACCGTGGACACCTATCT+AGG | - | chr3.3:17838795-17838814 | None:intergenic | 55.0% | |
| TCCCACTTGGGGAACAACCT+AGG | + | chr3.3:17839235-17839254 | MS.gene28231:CDS | 55.0% | |
| TTATCAGCCGCCGAGAAAGC+AGG | + | chr3.3:17839345-17839364 | MS.gene28231:CDS | 55.0% | |
| !!! | GGTGGTTCTGCTGGTTTTGC+TGG | + | chr3.3:17839582-17839601 | MS.gene28231:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 17838003 | 17839641 | 17838003 | ID=MS.gene28231 |
| chr3.3 | mRNA | 17838003 | 17839641 | 17838003 | ID=MS.gene28231.t1;Parent=MS.gene28231 |
| chr3.3 | exon | 17838003 | 17838056 | 17838003 | ID=MS.gene28231.t1.exon1;Parent=MS.gene28231.t1 |
| chr3.3 | CDS | 17838003 | 17838056 | 17838003 | ID=cds.MS.gene28231.t1;Parent=MS.gene28231.t1 |
| chr3.3 | exon | 17839222 | 17839641 | 17839222 | ID=MS.gene28231.t1.exon2;Parent=MS.gene28231.t1 |
| chr3.3 | CDS | 17839222 | 17839641 | 17839222 | ID=cds.MS.gene28231.t1;Parent=MS.gene28231.t1 |
| Gene Sequence |
| Protein sequence |
