Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53716.t1 | XP_013467255.1 | 89.8 | 353 | 36 | 0 | 1 | 353 | 1 | 353 | 1.70E-163 | 585.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53716.t1 | Q84W65 | 61.6 | 375 | 115 | 8 | 1 | 350 | 1 | 371 | 1.8e-105 | 384.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53716.t1 | A0A072VGX0 | 89.8 | 353 | 36 | 0 | 1 | 353 | 1 | 353 | 1.2e-163 | 585.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049137 | MS.gene53716 | 0.823284 | 1.50E-53 | -1.69E-46 |
| MS.gene049171 | MS.gene53716 | 0.82449 | 7.85E-54 | -1.69E-46 |
| MS.gene049222 | MS.gene53716 | 0.84536 | 4.26E-59 | -1.69E-46 |
| MS.gene049285 | MS.gene53716 | 0.801746 | 7.78E-49 | -1.69E-46 |
| MS.gene049427 | MS.gene53716 | 0.819491 | 1.13E-52 | -1.69E-46 |
| MS.gene049609 | MS.gene53716 | 0.815108 | 1.09E-51 | -1.69E-46 |
| MS.gene049633 | MS.gene53716 | 0.812578 | 3.95E-51 | -1.69E-46 |
| MS.gene049805 | MS.gene53716 | 0.805511 | 1.29E-49 | -1.69E-46 |
| MS.gene050163 | MS.gene53716 | 0.80272 | 4.91E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene53716 | 0.801803 | 7.58E-49 | -1.69E-46 |
| MS.gene050538 | MS.gene53716 | 0.825628 | 4.23E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene53716 | 0.868821 | 4.91E-66 | -1.69E-46 |
| MS.gene050699 | MS.gene53716 | 0.804892 | 1.74E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene53716 | 0.885151 | 1.04E-71 | -1.69E-46 |
| MS.gene050772 | MS.gene53716 | 0.804314 | 2.29E-49 | -1.69E-46 |
| MS.gene05080 | MS.gene53716 | 0.814794 | 1.28E-51 | -1.69E-46 |
| MS.gene050950 | MS.gene53716 | 0.881222 | 2.87E-70 | -1.69E-46 |
| MS.gene05100 | MS.gene53716 | 0.817078 | 3.97E-52 | -1.69E-46 |
| MS.gene051387 | MS.gene53716 | 0.804934 | 1.70E-49 | -1.69E-46 |
| MS.gene051666 | MS.gene53716 | 0.838801 | 2.32E-57 | -1.69E-46 |
| MS.gene051838 | MS.gene53716 | 0.810516 | 1.11E-50 | -1.69E-46 |
| MS.gene052164 | MS.gene53716 | 0.849326 | 3.47E-60 | -1.69E-46 |
| MS.gene052482 | MS.gene53716 | 0.818275 | 2.13E-52 | -1.69E-46 |
| MS.gene052486 | MS.gene53716 | 0.823086 | 1.67E-53 | -1.69E-46 |
| MS.gene052501 | MS.gene53716 | 0.832233 | 1.06E-55 | -1.69E-46 |
| MS.gene052503 | MS.gene53716 | 0.830801 | 2.39E-55 | -1.69E-46 |
| MS.gene052505 | MS.gene53716 | 0.830385 | 3.03E-55 | -1.69E-46 |
| MS.gene052615 | MS.gene53716 | 0.834801 | 2.43E-56 | -1.69E-46 |
| MS.gene052823 | MS.gene53716 | 0.831558 | 1.56E-55 | -1.69E-46 |
| MS.gene052825 | MS.gene53716 | 0.832692 | 8.18E-56 | -1.69E-46 |
| MS.gene052982 | MS.gene53716 | 0.821233 | 4.50E-53 | -1.69E-46 |
| MS.gene053203 | MS.gene53716 | 0.836626 | 8.38E-57 | -1.69E-46 |
| MS.gene053213 | MS.gene53716 | 0.819875 | 9.23E-53 | -1.69E-46 |
| MS.gene053286 | MS.gene53716 | 0.817915 | 2.57E-52 | -1.69E-46 |
| MS.gene053436 | MS.gene53716 | 0.857146 | 1.99E-62 | -1.69E-46 |
| MS.gene053574 | MS.gene53716 | 0.845951 | 2.95E-59 | -1.69E-46 |
| MS.gene053579 | MS.gene53716 | 0.821134 | 4.74E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene53716 | 0.830438 | 2.94E-55 | -1.69E-46 |
| MS.gene053632 | MS.gene53716 | 0.810423 | 1.16E-50 | -1.69E-46 |
| MS.gene054408 | MS.gene53716 | 0.848253 | 6.90E-60 | -1.69E-46 |
| MS.gene054595 | MS.gene53716 | 0.804533 | 2.06E-49 | -1.69E-46 |
| MS.gene054600 | MS.gene53716 | 0.800901 | 1.16E-48 | -1.69E-46 |
| MS.gene05470 | MS.gene53716 | 0.852088 | 5.81E-61 | -1.69E-46 |
| MS.gene054927 | MS.gene53716 | 0.830461 | 2.90E-55 | -1.69E-46 |
| MS.gene055502 | MS.gene53716 | 0.814103 | 1.83E-51 | -1.69E-46 |
| MS.gene055577 | MS.gene53716 | 0.802962 | 4.37E-49 | -1.69E-46 |
| MS.gene055629 | MS.gene53716 | 0.801812 | 7.54E-49 | -1.69E-46 |
| MS.gene055748 | MS.gene53716 | 0.822517 | 2.27E-53 | -1.69E-46 |
| MS.gene055750 | MS.gene53716 | 0.801471 | 8.87E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene53716 | 0.815892 | 7.32E-52 | -1.69E-46 |
| MS.gene056040 | MS.gene53716 | 0.865748 | 4.71E-65 | -1.69E-46 |
| MS.gene056166 | MS.gene53716 | 0.833402 | 5.45E-56 | -1.69E-46 |
| MS.gene056610 | MS.gene53716 | 0.807554 | 4.78E-50 | -1.69E-46 |
| MS.gene056657 | MS.gene53716 | 0.803126 | 4.05E-49 | -1.69E-46 |
| MS.gene056692 | MS.gene53716 | 0.804458 | 2.14E-49 | -1.69E-46 |
| MS.gene057416 | MS.gene53716 | 0.814012 | 1.91E-51 | -1.69E-46 |
| MS.gene057658 | MS.gene53716 | 0.833899 | 4.09E-56 | -1.69E-46 |
| MS.gene057831 | MS.gene53716 | 0.860494 | 1.99E-63 | -1.69E-46 |
| MS.gene05787 | MS.gene53716 | 0.817507 | 3.18E-52 | -1.69E-46 |
| MS.gene058130 | MS.gene53716 | 0.823089 | 1.67E-53 | -1.69E-46 |
| MS.gene05837 | MS.gene53716 | 0.81429 | 1.66E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene53716 | 0.81775 | 2.80E-52 | -1.69E-46 |
| MS.gene058544 | MS.gene53716 | 0.865227 | 6.88E-65 | -1.69E-46 |
| MS.gene058838 | MS.gene53716 | 0.836802 | 7.56E-57 | -1.69E-46 |
| MS.gene05883 | MS.gene53716 | 0.852768 | 3.72E-61 | -1.69E-46 |
| MS.gene059023 | MS.gene53716 | 0.821127 | 4.76E-53 | -1.69E-46 |
| MS.gene059667 | MS.gene53716 | 0.822249 | 2.62E-53 | -1.69E-46 |
| MS.gene059718 | MS.gene53716 | 0.826886 | 2.12E-54 | -1.69E-46 |
| MS.gene059756 | MS.gene53716 | 0.804482 | 2.11E-49 | -1.69E-46 |
| MS.gene060762 | MS.gene53716 | 0.803222 | 3.86E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene53716 | 0.826663 | 2.40E-54 | -1.69E-46 |
| MS.gene06092 | MS.gene53716 | 0.832832 | 7.55E-56 | -1.69E-46 |
| MS.gene060982 | MS.gene53716 | 0.808651 | 2.79E-50 | -1.69E-46 |
| MS.gene061150 | MS.gene53716 | 0.827641 | 1.40E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53716.t1 | MTR_1g047990 | 96.884 | 353 | 11 | 0 | 1 | 353 | 1 | 353 | 0.0 | 693 |
| MS.gene53716.t1 | MTR_6g079650 | 57.609 | 92 | 38 | 1 | 260 | 350 | 9 | 100 | 8.78e-32 | 115 |
| MS.gene53716.t1 | MTR_4g104680 | 36.500 | 200 | 116 | 7 | 16 | 213 | 4 | 194 | 4.65e-22 | 97.8 |
| MS.gene53716.t1 | MTR_3g086590 | 35.938 | 128 | 80 | 1 | 78 | 203 | 61 | 188 | 7.39e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53716.t1 | AT4G26500 | 71.525 | 295 | 71 | 4 | 69 | 350 | 77 | 371 | 3.34e-138 | 397 |
| MS.gene53716.t1 | AT1G55805 | 71.591 | 88 | 24 | 1 | 263 | 349 | 68 | 155 | 8.69e-40 | 138 |
| MS.gene53716.t1 | AT1G67810 | 31.429 | 175 | 113 | 3 | 40 | 208 | 35 | 208 | 1.91e-16 | 78.6 |
| MS.gene53716.t1 | AT5G50210 | 32.812 | 192 | 124 | 4 | 24 | 213 | 35 | 223 | 7.84e-15 | 76.3 |
Find 93 sgRNAs with CRISPR-Local
Find 112 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCAAGATGAGTTGGATTC+TGG | 0.176580 | 1.3:+29830513 | MS.gene53716:CDS |
| CCAAGTTTAGGTGTTGATTT+TGG | 0.250352 | 1.3:+29830255 | MS.gene53716:CDS |
| GAAGAGAAGCTGTTCGTATT+TGG | 0.258831 | 1.3:-29829809 | None:intergenic |
| TTAACCCCTTCTAGAAATAA+TGG | 0.260107 | 1.3:+29830084 | MS.gene53716:CDS |
| GAAGAGGGAAAGTGAGAATT+TGG | 0.282002 | 1.3:-29829578 | None:intergenic |
| AAGGTTGTGTCTCTCAAGTT+TGG | 0.310231 | 1.3:+29829890 | MS.gene53716:CDS |
| AGCTGTTCGTATTTGGCTTT+GGG | 0.314164 | 1.3:-29829802 | None:intergenic |
| AAGCTGTTCGTATTTGGCTT+TGG | 0.330510 | 1.3:-29829803 | None:intergenic |
| CCCAAGATGCATTACAAAAT+CGG | 0.341009 | 1.3:-29830049 | None:intergenic |
| TTTACGATTTCTTGAAGCTT+TGG | 0.349699 | 1.3:-29829757 | None:intergenic |
| CCTTCTGTGACCCCAAGTTT+AGG | 0.359965 | 1.3:+29830243 | MS.gene53716:CDS |
| AGGGAGAGGGAAGAGGATAA+AGG | 0.373167 | 1.3:+29830311 | MS.gene53716:CDS |
| CTCGCTGCTTTACTCGTTCA+AGG | 0.382796 | 1.3:+29829985 | MS.gene53716:CDS |
| AGAGTTTCAAGGGAAGAGTT+TGG | 0.384288 | 1.3:+29830461 | MS.gene53716:CDS |
| TAACCCCTTCTAGAAATAAT+GGG | 0.387357 | 1.3:+29830085 | MS.gene53716:CDS |
| GCTTTATGTGGAAGCTGAAA+AGG | 0.396625 | 1.3:+29830149 | MS.gene53716:CDS |
| TGATGACGAGAATGTTGAAT+TGG | 0.400400 | 1.3:+29830287 | MS.gene53716:CDS |
| TGGGAGTGATTGGAAGGTGA+TGG | 0.400836 | 1.3:-29829659 | None:intergenic |
| GCTGGACATGCTGGTGTTAG+AGG | 0.402189 | 1.3:+29830396 | MS.gene53716:CDS |
| ACCTGGATAATTTCATTAAC+GGG | 0.402796 | 1.3:-29830021 | None:intergenic |
| CGTTGTCTATGAAGCTGATT+CGG | 0.403821 | 1.3:+29829942 | MS.gene53716:CDS |
| CTTTGGGTTCTTGCACGGAT+TGG | 0.404849 | 1.3:-29829786 | None:intergenic |
| AAGGGAAGAGTTTGGTTAAG+AGG | 0.410584 | 1.3:+29830469 | MS.gene53716:CDS |
| ATTGGGATTCGAGGGGTTTG+AGG | 0.413363 | 1.3:-29829843 | None:intergenic |
| AGGTTGTGTCTCTCAAGTTT+GGG | 0.420021 | 1.3:+29829891 | MS.gene53716:CDS |
| TCTTCAACTTCCAACTCAAT+AGG | 0.421778 | 1.3:-29830357 | None:intergenic |
| GACCTGGATAATTTCATTAA+CGG | 0.427963 | 1.3:-29830022 | None:intergenic |
| ACTTCTGAATCTGACTCAAT+TGG | 0.431624 | 1.3:+29830174 | MS.gene53716:CDS |
| CCAAAATCAACACCTAAACT+TGG | 0.437746 | 1.3:-29830255 | None:intergenic |
| GGGAGTGATTGGAAGGTGAT+GGG | 0.438845 | 1.3:-29829658 | None:intergenic |
| AAAAGCACTTATGCTTTATG+TGG | 0.444787 | 1.3:+29830137 | MS.gene53716:CDS |
| TTCGATGGGTTGAAGGGAAG+TGG | 0.449871 | 1.3:-29829725 | None:intergenic |
| GGAGTTCTTCGATGGGTTGA+AGG | 0.449918 | 1.3:-29829732 | None:intergenic |
| AATTGGGAGGGAGAGGGAAG+AGG | 0.450448 | 1.3:+29830304 | MS.gene53716:CDS |
| GAAAGAGAAGAGGGTGTTTG+TGG | 0.454312 | 1.3:-29829632 | None:intergenic |
| AAAACCCATTATTTCTAGAA+GGG | 0.455596 | 1.3:-29830089 | None:intergenic |
| TGAACATGAAGAAAGGGAAT+TGG | 0.456159 | 1.3:-29829539 | None:intergenic |
| GTGGTTTCTAAAGAGTTTCA+AGG | 0.456838 | 1.3:+29830450 | MS.gene53716:CDS |
| CTTTGGAGGGAGTTCTTCGA+TGG | 0.457099 | 1.3:-29829740 | None:intergenic |
| TAGCTTGCTTCAAGATGAGT+TGG | 0.460976 | 1.3:+29830506 | MS.gene53716:CDS |
| AAAGAGAAGAGGGTGTTTGT+GGG | 0.468262 | 1.3:-29829631 | None:intergenic |
| GGAACTTCAGCCTATTGAGT+TGG | 0.469218 | 1.3:+29830347 | MS.gene53716:CDS |
| ATCGAAATGAACATGAAGAA+AGG | 0.469710 | 1.3:-29829546 | None:intergenic |
| AGTTTGGGTCCGAGCCTACT+TGG | 0.471796 | 1.3:+29829906 | MS.gene53716:CDS |
| GATGATGATGATGGTGGTGG+TGG | 0.473775 | 1.3:-29829688 | None:intergenic |
| TTTGGCTTTGGGTTCTTGCA+CGG | 0.474908 | 1.3:-29829791 | None:intergenic |
| CGGATTCTGTTCTCACCAAA+GGG | 0.484901 | 1.3:+29829962 | MS.gene53716:CDS |
| ACGATTTCTTGAAGCTTTGG+AGG | 0.485000 | 1.3:-29829754 | None:intergenic |
| CCAAGATGCATTACAAAATC+GGG | 0.485227 | 1.3:-29830048 | None:intergenic |
| GACACATTTCAATGTTAAAG+TGG | 0.486500 | 1.3:+29830431 | MS.gene53716:CDS |
| AATGTTGAATTGGGAGGGAG+AGG | 0.486652 | 1.3:+29830297 | MS.gene53716:CDS |
| TACGAACAGCTTCTCTTCTA+CGG | 0.489334 | 1.3:+29829814 | MS.gene53716:CDS |
| TCGGATTCTGTTCTCACCAA+AGG | 0.495251 | 1.3:+29829961 | MS.gene53716:CDS |
| GATGACGAGAATGTTGAATT+GGG | 0.497878 | 1.3:+29830288 | MS.gene53716:CDS |
| GATAAAGGAAAAGCTTGAAA+AGG | 0.498122 | 1.3:+29830326 | MS.gene53716:CDS |
| ACCGACTTCAGAAGGCGTCT+TGG | 0.500732 | 1.3:-29830559 | None:intergenic |
| AGAGTTTGGTTAAGAGGCAT+AGG | 0.503534 | 1.3:+29830475 | MS.gene53716:CDS |
| TGAAGGGAAGTGGATGGAAG+TGG | 0.504888 | 1.3:-29829715 | None:intergenic |
| CTTTATGTGGAAGCTGAAAA+GGG | 0.506897 | 1.3:+29830150 | MS.gene53716:CDS |
| TTACAAAATCGGGTGTGACC+TGG | 0.509018 | 1.3:-29830038 | None:intergenic |
| CATCCTTCACCGACTTCAGA+AGG | 0.509950 | 1.3:-29830567 | None:intergenic |
| TCGAAATGAACATGAAGAAA+GGG | 0.512101 | 1.3:-29829545 | None:intergenic |
| GTTCTTGCACGGATTGGAAG+AGG | 0.512154 | 1.3:-29829780 | None:intergenic |
| CAAAATCAACACCTAAACTT+GGG | 0.519100 | 1.3:-29830254 | None:intergenic |
| TATCAACATGCTGGACATGC+TGG | 0.527867 | 1.3:+29830387 | MS.gene53716:CDS |
| ACATGAAGAAAGGGAATTGG+TGG | 0.538024 | 1.3:-29829536 | None:intergenic |
| GAGTAAAGCAGCGAGCCCTT+TGG | 0.541289 | 1.3:-29829977 | None:intergenic |
| ATGTTGAATTGGGAGGGAGA+GGG | 0.542038 | 1.3:+29830298 | MS.gene53716:CDS |
| AAACCCATTATTTCTAGAAG+GGG | 0.542885 | 1.3:-29830088 | None:intergenic |
| GATGGGTTTGAAAGAGAAGA+GGG | 0.545338 | 1.3:-29829641 | None:intergenic |
| ACCCGTTAATGAAATTATCC+AGG | 0.545924 | 1.3:+29830020 | MS.gene53716:CDS |
| CCTAAACTTGGGGTCACAGA+AGG | 0.548902 | 1.3:-29830243 | None:intergenic |
| CGATTTCTTGAAGCTTTGGA+GGG | 0.549690 | 1.3:-29829753 | None:intergenic |
| ATGGGTTGAAGGGAAGTGGA+TGG | 0.556200 | 1.3:-29829721 | None:intergenic |
| AGCTTTGTTGAGAATTCAAG+TGG | 0.556883 | 1.3:+29830219 | MS.gene53716:CDS |
| TGGGTCCGAGCCTACTTGGA+TGG | 0.557259 | 1.3:+29829910 | MS.gene53716:CDS |
| GTTTCTTTCACCATCCAAGT+AGG | 0.562090 | 1.3:-29829920 | None:intergenic |
| ACGAGAATGTTGAATTGGGA+GGG | 0.562350 | 1.3:+29830292 | MS.gene53716:CDS |
| GCCAAGACGCCTTCTGAAGT+CGG | 0.570403 | 1.3:+29830558 | MS.gene53716:CDS |
| TGGTTTCTAAAGAGTTTCAA+GGG | 0.574771 | 1.3:+29830451 | MS.gene53716:CDS |
| TGATGGGTTTGAAAGAGAAG+AGG | 0.578500 | 1.3:-29829642 | None:intergenic |
| TTTCACCATCCAAGTAGGCT+CGG | 0.579472 | 1.3:-29829915 | None:intergenic |
| GAGTTCTTCGATGGGTTGAA+GGG | 0.581123 | 1.3:-29829731 | None:intergenic |
| ACGCCTTCTGAAGTCGGTGA+AGG | 0.585013 | 1.3:+29830564 | MS.gene53716:CDS |
| TTTGGAGGGAGTTCTTCGAT+GGG | 0.593786 | 1.3:-29829739 | None:intergenic |
| GATGTGTCTTATCAACATGC+TGG | 0.597053 | 1.3:+29830378 | MS.gene53716:CDS |
| AACATTCTCGTCATCAACCT+CGG | 0.597911 | 1.3:-29830280 | None:intergenic |
| CTGGACATGCTGGTGTTAGA+GGG | 0.601848 | 1.3:+29830397 | MS.gene53716:CDS |
| ACTAAAGACAACAAAGTCGA+AGG | 0.628037 | 1.3:+29829871 | MS.gene53716:CDS |
| AAAATCAACACCTAAACTTG+GGG | 0.630526 | 1.3:-29830253 | None:intergenic |
| CTAAACTTGGGGTCACAGAA+GGG | 0.633009 | 1.3:-29830242 | None:intergenic |
| GACGAGAATGTTGAATTGGG+AGG | 0.654890 | 1.3:+29830291 | MS.gene53716:CDS |
| GCTGGTGTTAGAGGGAGCGA+TGG | 0.680792 | 1.3:+29830405 | MS.gene53716:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTGTCTTTAGTTTTAAATT+GGG | - | chr1.3:29829863-29829882 | None:intergenic | 20.0% |
| !!! | TGTTGTCTTTAGTTTTAAAT+TGG | - | chr1.3:29829864-29829883 | None:intergenic | 20.0% |
| !!! | AAAAACCCATTATTTCTAGA+AGG | - | chr1.3:29830093-29830112 | None:intergenic | 25.0% |
| !!! | AAAACCCATTATTTCTAGAA+GGG | - | chr1.3:29830092-29830111 | None:intergenic | 25.0% |
| !!! | AGAGTTATTTTTGTTGAAGA+GGG | - | chr1.3:29829596-29829615 | None:intergenic | 25.0% |
| !!! | TAGAGTTATTTTTGTTGAAG+AGG | - | chr1.3:29829597-29829616 | None:intergenic | 25.0% |
| AAAATCAACACCTAAACTTG+GGG | - | chr1.3:29830256-29830275 | None:intergenic | 30.0% | |
| ACCTGGATAATTTCATTAAC+GGG | - | chr1.3:29830024-29830043 | None:intergenic | 30.0% | |
| ATCGAAATGAACATGAAGAA+AGG | - | chr1.3:29829549-29829568 | None:intergenic | 30.0% | |
| CAAAATCAACACCTAAACTT+GGG | - | chr1.3:29830257-29830276 | None:intergenic | 30.0% | |
| GACACATTTCAATGTTAAAG+TGG | + | chr1.3:29830431-29830450 | MS.gene53716:CDS | 30.0% | |
| GACCTGGATAATTTCATTAA+CGG | - | chr1.3:29830025-29830044 | None:intergenic | 30.0% | |
| GATAAAGGAAAAGCTTGAAA+AGG | + | chr1.3:29830326-29830345 | MS.gene53716:CDS | 30.0% | |
| TCGAAATGAACATGAAGAAA+GGG | - | chr1.3:29829548-29829567 | None:intergenic | 30.0% | |
| TTTACGATTTCTTGAAGCTT+TGG | - | chr1.3:29829760-29829779 | None:intergenic | 30.0% | |
| ! | TAACCCCTTCTAGAAATAAT+GGG | + | chr1.3:29830085-29830104 | MS.gene53716:CDS | 30.0% |
| ! | TGGTTTCTAAAGAGTTTCAA+GGG | + | chr1.3:29830451-29830470 | MS.gene53716:CDS | 30.0% |
| ! | TTAACCCCTTCTAGAAATAA+TGG | + | chr1.3:29830084-29830103 | MS.gene53716:CDS | 30.0% |
| !! | AAAAGCACTTATGCTTTATG+TGG | + | chr1.3:29830137-29830156 | MS.gene53716:CDS | 30.0% |
| !! | AAACCCATTATTTCTAGAAG+GGG | - | chr1.3:29830091-29830110 | None:intergenic | 30.0% |
| !!! | AGTTTTAAATTGGGATTCGA+GGG | - | chr1.3:29829854-29829873 | None:intergenic | 30.0% |
| !!! | TAGTTTTAAATTGGGATTCG+AGG | - | chr1.3:29829855-29829874 | None:intergenic | 30.0% |
| ACCCGTTAATGAAATTATCC+AGG | + | chr1.3:29830020-29830039 | MS.gene53716:CDS | 35.0% | |
| ACTAAAGACAACAAAGTCGA+AGG | + | chr1.3:29829871-29829890 | MS.gene53716:CDS | 35.0% | |
| ACTTCTGAATCTGACTCAAT+TGG | + | chr1.3:29830174-29830193 | MS.gene53716:CDS | 35.0% | |
| CCAAAATCAACACCTAAACT+TGG | - | chr1.3:29830258-29830277 | None:intergenic | 35.0% | |
| CCAAGATGCATTACAAAATC+GGG | - | chr1.3:29830051-29830070 | None:intergenic | 35.0% | |
| CCCAAGATGCATTACAAAAT+CGG | - | chr1.3:29830052-29830071 | None:intergenic | 35.0% | |
| CTTTATGTGGAAGCTGAAAA+GGG | + | chr1.3:29830150-29830169 | MS.gene53716:CDS | 35.0% | |
| GATGACGAGAATGTTGAATT+GGG | + | chr1.3:29830288-29830307 | MS.gene53716:CDS | 35.0% | |
| TCTTCAACTTCCAACTCAAT+AGG | - | chr1.3:29830360-29830379 | None:intergenic | 35.0% | |
| TGAACATGAAGAAAGGGAAT+TGG | - | chr1.3:29829542-29829561 | None:intergenic | 35.0% | |
| ! | CCGATTTTGTAATGCATCTT+GGG | + | chr1.3:29830049-29830068 | MS.gene53716:CDS | 35.0% |
| ! | GTGGTTTCTAAAGAGTTTCA+AGG | + | chr1.3:29830450-29830469 | MS.gene53716:CDS | 35.0% |
| ! | TGATGACGAGAATGTTGAAT+TGG | + | chr1.3:29830287-29830306 | MS.gene53716:CDS | 35.0% |
| !! | AGCTTTGTTGAGAATTCAAG+TGG | + | chr1.3:29830219-29830238 | MS.gene53716:CDS | 35.0% |
| !! | GTTTTAAATTGGGATTCGAG+GGG | - | chr1.3:29829853-29829872 | None:intergenic | 35.0% |
| !!! | CCAAGTTTAGGTGTTGATTT+TGG | + | chr1.3:29830255-29830274 | MS.gene53716:CDS | 35.0% |
| AACATTCTCGTCATCAACCT+CGG | - | chr1.3:29830283-29830302 | None:intergenic | 40.0% | |
| AAGGGAAGAGTTTGGTTAAG+AGG | + | chr1.3:29830469-29830488 | MS.gene53716:CDS | 40.0% | |
| AAGGTTGTGTCTCTCAAGTT+TGG | + | chr1.3:29829890-29829909 | MS.gene53716:CDS | 40.0% | |
| ACATGAAGAAAGGGAATTGG+TGG | - | chr1.3:29829539-29829558 | None:intergenic | 40.0% | |
| ACGAGAATGTTGAATTGGGA+GGG | + | chr1.3:29830292-29830311 | MS.gene53716:CDS | 40.0% | |
| AGAGTTTCAAGGGAAGAGTT+TGG | + | chr1.3:29830461-29830480 | MS.gene53716:CDS | 40.0% | |
| AGGTTGTGTCTCTCAAGTTT+GGG | + | chr1.3:29829891-29829910 | MS.gene53716:CDS | 40.0% | |
| CGTTGTCTATGAAGCTGATT+CGG | + | chr1.3:29829942-29829961 | MS.gene53716:CDS | 40.0% | |
| GAAGAGAAGCTGTTCGTATT+TGG | - | chr1.3:29829812-29829831 | None:intergenic | 40.0% | |
| GAAGAGGGAAAGTGAGAATT+TGG | - | chr1.3:29829581-29829600 | None:intergenic | 40.0% | |
| GATGTGTCTTATCAACATGC+TGG | + | chr1.3:29830378-29830397 | MS.gene53716:CDS | 40.0% | |
| GCTTTATGTGGAAGCTGAAA+AGG | + | chr1.3:29830149-29830168 | MS.gene53716:CDS | 40.0% | |
| GTTTCTTTCACCATCCAAGT+AGG | - | chr1.3:29829923-29829942 | None:intergenic | 40.0% | |
| TACGAACAGCTTCTCTTCTA+CGG | + | chr1.3:29829814-29829833 | MS.gene53716:CDS | 40.0% | |
| ! | AAGCTGTTCGTATTTGGCTT+TGG | - | chr1.3:29829806-29829825 | None:intergenic | 40.0% |
| ! | ACGATTTCTTGAAGCTTTGG+AGG | - | chr1.3:29829757-29829776 | None:intergenic | 40.0% |
| ! | AGAGTTTGGTTAAGAGGCAT+AGG | + | chr1.3:29830475-29830494 | MS.gene53716:CDS | 40.0% |
| ! | AGTGGTGATGATGATGATGA+TGG | - | chr1.3:29829700-29829719 | None:intergenic | 40.0% |
| ! | CCCGATTTTGTAATGCATCT+TGG | + | chr1.3:29830048-29830067 | MS.gene53716:CDS | 40.0% |
| ! | CTTCAAGATGAGTTGGATTC+TGG | + | chr1.3:29830513-29830532 | MS.gene53716:CDS | 40.0% |
| ! | GATGGGTTTGAAAGAGAAGA+GGG | - | chr1.3:29829644-29829663 | None:intergenic | 40.0% |
| ! | TTACTCGTTCAAGGCTTTTC+AGG | + | chr1.3:29829994-29830013 | MS.gene53716:CDS | 40.0% |
| ! | TTTTGTTGGGAGTGATTGGA+AGG | - | chr1.3:29829668-29829687 | None:intergenic | 40.0% |
| !! | AAAGAGAAGAGGGTGTTTGT+GGG | - | chr1.3:29829634-29829653 | None:intergenic | 40.0% |
| !! | AGCTGTTCGTATTTGGCTTT+GGG | - | chr1.3:29829805-29829824 | None:intergenic | 40.0% |
| !! | CGATTTCTTGAAGCTTTGGA+GGG | - | chr1.3:29829756-29829775 | None:intergenic | 40.0% |
| !! | TAGCTTGCTTCAAGATGAGT+TGG | + | chr1.3:29830506-29830525 | MS.gene53716:CDS | 40.0% |
| !! | TGATGGGTTTGAAAGAGAAG+AGG | - | chr1.3:29829645-29829664 | None:intergenic | 40.0% |
| AATGTTGAATTGGGAGGGAG+AGG | + | chr1.3:29830297-29830316 | MS.gene53716:CDS | 45.0% | |
| ATGTTGAATTGGGAGGGAGA+GGG | + | chr1.3:29830298-29830317 | MS.gene53716:CDS | 45.0% | |
| CGGATTCTGTTCTCACCAAA+GGG | + | chr1.3:29829962-29829981 | MS.gene53716:CDS | 45.0% | |
| CTAAACTTGGGGTCACAGAA+GGG | - | chr1.3:29830245-29830264 | None:intergenic | 45.0% | |
| GACGAGAATGTTGAATTGGG+AGG | + | chr1.3:29830291-29830310 | MS.gene53716:CDS | 45.0% | |
| GGAACTTCAGCCTATTGAGT+TGG | + | chr1.3:29830347-29830366 | MS.gene53716:CDS | 45.0% | |
| TATCAACATGCTGGACATGC+TGG | + | chr1.3:29830387-29830406 | MS.gene53716:CDS | 45.0% | |
| TCGGATTCTGTTCTCACCAA+AGG | + | chr1.3:29829961-29829980 | MS.gene53716:CDS | 45.0% | |
| TTACAAAATCGGGTGTGACC+TGG | - | chr1.3:29830041-29830060 | None:intergenic | 45.0% | |
| TTTCACCATCCAAGTAGGCT+CGG | - | chr1.3:29829918-29829937 | None:intergenic | 45.0% | |
| TTTGGAGGGAGTTCTTCGAT+GGG | - | chr1.3:29829742-29829761 | None:intergenic | 45.0% | |
| !! | GAAAGAGAAGAGGGTGTTTG+TGG | - | chr1.3:29829635-29829654 | None:intergenic | 45.0% |
| !! | GAGTTCTTCGATGGGTTGAA+GGG | - | chr1.3:29829734-29829753 | None:intergenic | 45.0% |
| !! | GATGATGATGATGATGGTGG+TGG | - | chr1.3:29829694-29829713 | None:intergenic | 45.0% |
| !! | GGTGATGATGATGATGATGG+TGG | - | chr1.3:29829697-29829716 | None:intergenic | 45.0% |
| !! | TTTGGCTTTGGGTTCTTGCA+CGG | - | chr1.3:29829794-29829813 | None:intergenic | 45.0% |
| !!! | AGGTGTTGATTTTGGTTCCG+AGG | + | chr1.3:29830263-29830282 | MS.gene53716:CDS | 45.0% |
| !!! | ATGGTGGTGGTGGTTTTGTT+GGG | - | chr1.3:29829681-29829700 | None:intergenic | 45.0% |
| !!! | GTGGTTTTGTTGGGAGTGAT+TGG | - | chr1.3:29829672-29829691 | None:intergenic | 45.0% |
| AGGGAGAGGGAAGAGGATAA+AGG | + | chr1.3:29830311-29830330 | MS.gene53716:CDS | 50.0% | |
| ATTGGGATTCGAGGGGTTTG+AGG | - | chr1.3:29829846-29829865 | None:intergenic | 50.0% | |
| CCTAAACTTGGGGTCACAGA+AGG | - | chr1.3:29830246-29830265 | None:intergenic | 50.0% | |
| CCTTCTGTGACCCCAAGTTT+AGG | + | chr1.3:29830243-29830262 | MS.gene53716:CDS | 50.0% | |
| GGGAGTGATTGGAAGGTGAT+GGG | - | chr1.3:29829661-29829680 | None:intergenic | 50.0% | |
| TGAAGGGAAGTGGATGGAAG+TGG | - | chr1.3:29829718-29829737 | None:intergenic | 50.0% | |
| TGGGAGTGATTGGAAGGTGA+TGG | - | chr1.3:29829662-29829681 | None:intergenic | 50.0% | |
| ! | ATGGGTTGAAGGGAAGTGGA+TGG | - | chr1.3:29829724-29829743 | None:intergenic | 50.0% |
| ! | CTCGCTGCTTTACTCGTTCA+AGG | + | chr1.3:29829985-29830004 | MS.gene53716:CDS | 50.0% |
| ! | CTGGACATGCTGGTGTTAGA+GGG | + | chr1.3:29830397-29830416 | MS.gene53716:CDS | 50.0% |
| ! | CTTTGGAGGGAGTTCTTCGA+TGG | - | chr1.3:29829743-29829762 | None:intergenic | 50.0% |
| ! | CTTTGGGTTCTTGCACGGAT+TGG | - | chr1.3:29829789-29829808 | None:intergenic | 50.0% |
| !! | CATCCTTCACCGACTTCAGA+AGG | - | chr1.3:29830570-29830589 | None:intergenic | 50.0% |
| !! | GATGATGATGATGGTGGTGG+TGG | - | chr1.3:29829691-29829710 | None:intergenic | 50.0% |
| !! | GGAGTTCTTCGATGGGTTGA+AGG | - | chr1.3:29829735-29829754 | None:intergenic | 50.0% |
| !! | GTTCTTGCACGGATTGGAAG+AGG | - | chr1.3:29829783-29829802 | None:intergenic | 50.0% |
| !! | TTCGATGGGTTGAAGGGAAG+TGG | - | chr1.3:29829728-29829747 | None:intergenic | 50.0% |
| !!! | GATGGTGGTGGTGGTTTTGT+TGG | - | chr1.3:29829682-29829701 | None:intergenic | 50.0% |
| AATTGGGAGGGAGAGGGAAG+AGG | + | chr1.3:29830304-29830323 | MS.gene53716:CDS | 55.0% | |
| AGTTTGGGTCCGAGCCTACT+TGG | + | chr1.3:29829906-29829925 | MS.gene53716:CDS | 55.0% | |
| GAGTAAAGCAGCGAGCCCTT+TGG | - | chr1.3:29829980-29829999 | None:intergenic | 55.0% | |
| ! | GCTGGACATGCTGGTGTTAG+AGG | + | chr1.3:29830396-29830415 | MS.gene53716:CDS | 55.0% |
| !! | ACCGACTTCAGAAGGCGTCT+TGG | - | chr1.3:29830562-29830581 | None:intergenic | 55.0% |
| !! | ACGCCTTCTGAAGTCGGTGA+AGG | + | chr1.3:29830564-29830583 | MS.gene53716:CDS | 55.0% |
| !! | GCCAAGACGCCTTCTGAAGT+CGG | + | chr1.3:29830558-29830577 | MS.gene53716:CDS | 55.0% |
| TGGGTCCGAGCCTACTTGGA+TGG | + | chr1.3:29829910-29829929 | MS.gene53716:CDS | 60.0% | |
| ! | GCTGGTGTTAGAGGGAGCGA+TGG | + | chr1.3:29830405-29830424 | MS.gene53716:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 29829529 | 29830590 | 29829529 | ID=MS.gene53716 |
| chr1.3 | mRNA | 29829529 | 29830590 | 29829529 | ID=MS.gene53716.t1;Parent=MS.gene53716 |
| chr1.3 | exon | 29829529 | 29830590 | 29829529 | ID=MS.gene53716.t1.exon1;Parent=MS.gene53716.t1 |
| chr1.3 | CDS | 29829529 | 29830590 | 29829529 | ID=cds.MS.gene53716.t1;Parent=MS.gene53716.t1 |
| Gene Sequence |
| Protein sequence |
