Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68653.t1 | XP_013464044.1 | 97.3 | 440 | 12 | 0 | 1 | 440 | 50 | 489 | 7.00E-236 | 826.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68653.t1 | Q9SL56 | 72.6 | 442 | 116 | 2 | 1 | 440 | 48 | 486 | 1.1e-181 | 637.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene68653.t1 | A0A072V7P9 | 97.3 | 440 | 12 | 0 | 1 | 440 | 50 | 489 | 5.0e-236 | 826.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene04918 | MS.gene68653 | 0.84129 | 5.20E-58 | -1.69E-46 |
MS.gene04919 | MS.gene68653 | 0.84021 | 9.97E-58 | -1.69E-46 |
MS.gene04920 | MS.gene68653 | 0.864867 | 8.93E-65 | -1.69E-46 |
MS.gene049254 | MS.gene68653 | 0.824885 | 6.33E-54 | -1.69E-46 |
MS.gene049283 | MS.gene68653 | 0.878308 | 3.12E-69 | -1.69E-46 |
MS.gene049499 | MS.gene68653 | 0.847822 | 9.07E-60 | -1.69E-46 |
MS.gene049983 | MS.gene68653 | 0.852303 | 5.04E-61 | -1.69E-46 |
MS.gene050414 | MS.gene68653 | 0.832762 | 7.86E-56 | -1.69E-46 |
MS.gene050654 | MS.gene68653 | 0.810551 | 1.09E-50 | -1.69E-46 |
MS.gene050945 | MS.gene68653 | 0.836037 | 1.18E-56 | -1.69E-46 |
MS.gene051003 | MS.gene68653 | 0.806166 | 9.38E-50 | -1.69E-46 |
MS.gene051234 | MS.gene68653 | 0.814818 | 1.27E-51 | -1.69E-46 |
MS.gene051332 | MS.gene68653 | 0.806581 | 7.67E-50 | -1.69E-46 |
MS.gene051343 | MS.gene68653 | 0.822953 | 1.80E-53 | -1.69E-46 |
MS.gene051597 | MS.gene68653 | 0.839427 | 1.59E-57 | -1.69E-46 |
MS.gene051628 | MS.gene68653 | 0.80271 | 4.93E-49 | -1.69E-46 |
MS.gene051637 | MS.gene68653 | 0.808165 | 3.54E-50 | -1.69E-46 |
MS.gene051699 | MS.gene68653 | 0.830397 | 3.01E-55 | -1.69E-46 |
MS.gene051902 | MS.gene68653 | 0.809845 | 1.55E-50 | -1.69E-46 |
MS.gene052016 | MS.gene68653 | 0.813709 | 2.23E-51 | -1.69E-46 |
MS.gene052118 | MS.gene68653 | 0.802524 | 5.39E-49 | -1.69E-46 |
MS.gene052342 | MS.gene68653 | 0.803023 | 4.25E-49 | -1.69E-46 |
MS.gene052463 | MS.gene68653 | 0.818044 | 2.41E-52 | -1.69E-46 |
MS.gene052533 | MS.gene68653 | 0.808394 | 3.16E-50 | -1.69E-46 |
MS.gene052534 | MS.gene68653 | 0.822522 | 2.26E-53 | -1.69E-46 |
MS.gene052582 | MS.gene68653 | 0.808981 | 2.37E-50 | -1.69E-46 |
MS.gene052584 | MS.gene68653 | 0.825763 | 3.93E-54 | -1.69E-46 |
MS.gene053272 | MS.gene68653 | -0.843929 | 1.04E-58 | -1.69E-46 |
MS.gene053298 | MS.gene68653 | 0.808356 | 3.23E-50 | -1.69E-46 |
MS.gene053931 | MS.gene68653 | 0.807801 | 4.23E-50 | -1.69E-46 |
MS.gene053963 | MS.gene68653 | 0.818302 | 2.10E-52 | -1.69E-46 |
MS.gene054142 | MS.gene68653 | 0.828602 | 8.21E-55 | -1.69E-46 |
MS.gene054178 | MS.gene68653 | 0.801712 | 7.91E-49 | -1.69E-46 |
MS.gene054222 | MS.gene68653 | 0.804488 | 2.11E-49 | -1.69E-46 |
MS.gene05458 | MS.gene68653 | 0.815264 | 1.01E-51 | -1.69E-46 |
MS.gene054892 | MS.gene68653 | 0.803673 | 3.12E-49 | -1.69E-46 |
MS.gene054893 | MS.gene68653 | 0.809241 | 2.09E-50 | -1.69E-46 |
MS.gene054957 | MS.gene68653 | 0.849753 | 2.64E-60 | -1.69E-46 |
MS.gene055513 | MS.gene68653 | 0.80478 | 1.83E-49 | -1.69E-46 |
MS.gene056045 | MS.gene68653 | 0.800705 | 1.27E-48 | -1.69E-46 |
MS.gene056272 | MS.gene68653 | 0.814168 | 1.77E-51 | -1.69E-46 |
MS.gene056699 | MS.gene68653 | 0.800608 | 1.33E-48 | -1.69E-46 |
MS.gene056776 | MS.gene68653 | 0.84317 | 1.65E-58 | -1.69E-46 |
MS.gene056973 | MS.gene68653 | 0.81605 | 6.75E-52 | -1.69E-46 |
MS.gene057102 | MS.gene68653 | 0.842921 | 1.92E-58 | -1.69E-46 |
MS.gene057155 | MS.gene68653 | 0.805499 | 1.30E-49 | -1.69E-46 |
MS.gene057208 | MS.gene68653 | 0.841821 | 3.77E-58 | -1.69E-46 |
MS.gene057622 | MS.gene68653 | 0.802951 | 4.40E-49 | -1.69E-46 |
MS.gene057890 | MS.gene68653 | -0.825133 | 5.53E-54 | -1.69E-46 |
MS.gene057893 | MS.gene68653 | -0.825159 | 5.46E-54 | -1.69E-46 |
MS.gene057919 | MS.gene68653 | 0.805913 | 1.06E-49 | -1.69E-46 |
MS.gene058008 | MS.gene68653 | 0.807008 | 6.23E-50 | -1.69E-46 |
MS.gene058159 | MS.gene68653 | 0.862624 | 4.44E-64 | -1.69E-46 |
MS.gene058279 | MS.gene68653 | 0.85203 | 6.03E-61 | -1.69E-46 |
MS.gene058330 | MS.gene68653 | 0.823568 | 1.29E-53 | -1.69E-46 |
MS.gene058708 | MS.gene68653 | -0.802887 | 4.53E-49 | -1.69E-46 |
MS.gene058781 | MS.gene68653 | 0.833174 | 6.21E-56 | -1.69E-46 |
MS.gene058783 | MS.gene68653 | 0.831226 | 1.88E-55 | -1.69E-46 |
MS.gene059146 | MS.gene68653 | 0.832916 | 7.19E-56 | -1.69E-46 |
MS.gene05952 | MS.gene68653 | 0.825295 | 5.07E-54 | -1.69E-46 |
MS.gene05985 | MS.gene68653 | -0.863967 | 1.71E-64 | -1.69E-46 |
MS.gene059901 | MS.gene68653 | -0.823384 | 1.43E-53 | -1.69E-46 |
MS.gene059935 | MS.gene68653 | 0.809109 | 2.23E-50 | -1.69E-46 |
MS.gene060244 | MS.gene68653 | 0.819611 | 1.06E-52 | -1.69E-46 |
MS.gene060259 | MS.gene68653 | 0.802523 | 5.39E-49 | -1.69E-46 |
MS.gene060365 | MS.gene68653 | 0.837023 | 6.64E-57 | -1.69E-46 |
MS.gene060522 | MS.gene68653 | 0.803944 | 2.74E-49 | -1.69E-46 |
MS.gene060527 | MS.gene68653 | 0.829048 | 6.40E-55 | -1.69E-46 |
MS.gene060777 | MS.gene68653 | 0.807047 | 6.12E-50 | -1.69E-46 |
MS.gene060932 | MS.gene68653 | 0.82195 | 3.07E-53 | -1.69E-46 |
MS.gene060933 | MS.gene68653 | 0.81214 | 4.93E-51 | -1.69E-46 |
MS.gene060935 | MS.gene68653 | 0.851591 | 8.04E-61 | -1.69E-46 |
MS.gene060937 | MS.gene68653 | 0.862508 | 4.82E-64 | -1.69E-46 |
MS.gene061100 | MS.gene68653 | 0.850399 | 1.74E-60 | -1.69E-46 |
MS.gene061160 | MS.gene68653 | 0.844173 | 8.90E-59 | -1.69E-46 |
MS.gene061188 | MS.gene68653 | 0.815188 | 1.05E-51 | -1.69E-46 |
MS.gene061243 | MS.gene68653 | 0.81053 | 1.10E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 121 sgRNAs with CRISPR-Local
Find 154 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTACTCCATTGGCATGTATT+TGG | 0.217319 | 2.4:-37446993 | MS.gene68653:CDS |
ATCACCTTGATGTTTCTTTC+TGG | 0.224719 | 2.4:-37445978 | MS.gene68653:CDS |
TTGAGGTTGTTTCTTGTGTT+TGG | 0.258719 | 2.4:-37446944 | MS.gene68653:CDS |
CCTTGTGTTGTTGCAGTTGT+TGG | 0.271567 | 2.4:-37446800 | MS.gene68653:CDS |
CAGTTGTTGGGAATTGGCTT+GGG | 0.271735 | 2.4:-37446787 | MS.gene68653:CDS |
TAGTATTGTTAAAAGTGTTC+TGG | 0.280648 | 2.4:-37447122 | MS.gene68653:CDS |
TTTGATATTGGAGGAGTTCT+AGG | 0.290006 | 2.4:-37446131 | MS.gene68653:CDS |
CTCATTTCAATTTCCATTCC+AGG | 0.291532 | 2.4:+37446563 | None:intergenic |
ATCAAAGAGGGGATTGATAA+TGG | 0.292694 | 2.4:-37446762 | MS.gene68653:CDS |
AGTTATTGCTTCGGGTGTTT+TGG | 0.295231 | 2.4:-37446696 | MS.gene68653:CDS |
TCAAATTCTTCGTCTGCTAT+TGG | 0.299829 | 2.4:-37446461 | MS.gene68653:CDS |
TTGCTTACACTTTCTTGTAT+TGG | 0.304564 | 2.4:-37446370 | MS.gene68653:CDS |
CTTTCAACAATATTTGATAT+TGG | 0.314253 | 2.4:-37446143 | MS.gene68653:CDS |
TGTGGAGTGTTTCAGTCAAT+TGG | 0.315612 | 2.4:-37446827 | MS.gene68653:CDS |
GTTCCCCGGGTTCCATTAAA+AGG | 0.330180 | 2.4:+37447055 | None:intergenic |
ACCTGTGTGCCTTATGTAGA+AGG | 0.333717 | 2.4:+37446343 | None:intergenic |
TGAGGTTGTTTCTTGTGTTT+GGG | 0.335721 | 2.4:-37446943 | MS.gene68653:CDS |
TGGTTTGATGTTCATGTGTT+GGG | 0.336491 | 2.4:-37446875 | MS.gene68653:CDS |
GTGTTGGTTGCAGCGGTTGC+TGG | 0.336822 | 2.4:-37446197 | MS.gene68653:intron |
CATTGGTTCAGTTATTGCTT+CGG | 0.342494 | 2.4:-37446705 | MS.gene68653:CDS |
GCTTTAGTGGTGGGAATTCT+CGG | 0.342732 | 2.4:-37445890 | MS.gene68653:CDS |
AACCAATTCAACCCTTGATT+CGG | 0.343395 | 2.4:-37447086 | MS.gene68653:CDS |
GGTTCTGTTGGAGCTGCTCT+TGG | 0.349690 | 2.4:-37445831 | MS.gene68653:CDS |
GGGGATTGATAATGGGGATA+TGG | 0.364452 | 2.4:-37446754 | MS.gene68653:CDS |
ACCAATTCAACCCTTGATTC+GGG | 0.365317 | 2.4:-37447085 | MS.gene68653:CDS |
TCAAAGAGGGGATTGATAAT+GGG | 0.369497 | 2.4:-37446761 | MS.gene68653:CDS |
GGTTGGTCGTTTGTGGTGCC+TGG | 0.375096 | 2.4:-37446662 | MS.gene68653:CDS |
ACCCGAATCAAGGGTTGAAT+TGG | 0.376330 | 2.4:+37447084 | None:intergenic |
AGCAGGTTATGTTTCAACTA+AGG | 0.376999 | 2.4:-37445799 | MS.gene68653:CDS |
TTGTGAATCCCGTGGATATA+GGG | 0.382740 | 2.4:-37446595 | MS.gene68653:CDS |
CTCGGTACGCAGGGCTTTAG+TGG | 0.382958 | 2.4:-37445903 | MS.gene68653:CDS |
GCAGTTGTTGGGAATTGGCT+TGG | 0.384000 | 2.4:-37446788 | MS.gene68653:CDS |
GTTTCTTGTGTTTGGGATGG+TGG | 0.396297 | 2.4:-37446936 | MS.gene68653:CDS |
GCCAAGCCGGTGAGTTCCCC+GGG | 0.400238 | 2.4:+37447042 | None:intergenic |
TTGTTGCAGTTGTTGGGAAT+TGG | 0.403901 | 2.4:-37446793 | MS.gene68653:CDS |
ATGAAAATGATCAAAATTCC+AGG | 0.406929 | 2.4:+37446644 | None:intergenic |
TCCATTGGCATGTATTTGGC+TGG | 0.414022 | 2.4:-37446989 | MS.gene68653:CDS |
TGGCTGGTCATGTTGGTGAT+AGG | 0.414837 | 2.4:-37446973 | MS.gene68653:CDS |
GTTGTGAATCCCGTGGATAT+AGG | 0.415165 | 2.4:-37446596 | MS.gene68653:CDS |
AGTATTGTTAAAAGTGTTCT+GGG | 0.416808 | 2.4:-37447121 | MS.gene68653:CDS |
CTTGTGTTGTTGCAGTTGTT+GGG | 0.419466 | 2.4:-37446799 | MS.gene68653:CDS |
GAATTTGAAATCGAACTATC+AGG | 0.420709 | 2.4:+37446476 | None:intergenic |
ACCTCGGTTGGGAATATCAT+TGG | 0.423859 | 2.4:-37446722 | MS.gene68653:CDS |
ATTGGTTACCCTTCTACATA+AGG | 0.433887 | 2.4:-37446352 | MS.gene68653:CDS |
ATTGGTTCAGTTATTGCTTC+GGG | 0.436836 | 2.4:-37446704 | MS.gene68653:CDS |
CTGGTTTGATGTTCATGTGT+TGG | 0.438300 | 2.4:-37446876 | MS.gene68653:CDS |
CGCCAAGCCGGTGAGTTCCC+CGG | 0.439386 | 2.4:+37447041 | None:intergenic |
TGGATGGGGTTGGTCGTTTG+TGG | 0.439831 | 2.4:-37446669 | MS.gene68653:CDS |
ACTGTTACTGCAATCATTGA+TGG | 0.445070 | 2.4:-37445858 | MS.gene68653:CDS |
TTTCTTACTTCTTACTCCAT+TGG | 0.445900 | 2.4:-37447004 | MS.gene68653:CDS |
AATCTATCTCACAAAACTGC+TGG | 0.446010 | 2.4:-37446170 | MS.gene68653:CDS |
GTGGAGTGTTTCAGTCAATT+GGG | 0.451035 | 2.4:-37446826 | MS.gene68653:CDS |
GTCGGTGTTCAGATTGTTTG+TGG | 0.462172 | 2.4:-37446845 | MS.gene68653:CDS |
GATATAGGGTTTGCGAGTCC+TGG | 0.467048 | 2.4:-37446581 | MS.gene68653:CDS |
TGGAATTCGCATACCTCGGT+TGG | 0.474948 | 2.4:-37446734 | MS.gene68653:CDS |
GGCTGCCGATCTCGGTACGC+AGG | 0.479417 | 2.4:-37445913 | MS.gene68653:CDS |
GCAGGTTATGTTTCAACTAA+GGG | 0.481100 | 2.4:-37445798 | MS.gene68653:CDS |
CTTTAGTGGTGGGAATTCTC+GGG | 0.483451 | 2.4:-37445889 | MS.gene68653:CDS |
ATTGGCTTGGGGAATCAAAG+AGG | 0.486300 | 2.4:-37446775 | MS.gene68653:CDS |
ACTGCTGTGGCTGCCGATCT+CGG | 0.489455 | 2.4:-37445921 | MS.gene68653:CDS |
TGGTGGGAATTCTCGGGCAC+TGG | 0.495438 | 2.4:-37445883 | MS.gene68653:CDS |
AAGGCGGCCAACCCGAATCA+AGG | 0.499130 | 2.4:+37447074 | None:intergenic |
TTTCTTGTGTTTGGGATGGT+GGG | 0.499647 | 2.4:-37446935 | MS.gene68653:CDS |
ACCCGGGGAACTCACCGGCT+TGG | 0.506049 | 2.4:-37447043 | MS.gene68653:CDS |
AATCATATCAGAAATGAAAC+CGG | 0.508019 | 2.4:+37446097 | None:intergenic |
TCAACAATATTTGATATTGG+AGG | 0.508821 | 2.4:-37446140 | MS.gene68653:CDS |
GGTACGCAGGGCTTTAGTGG+TGG | 0.512487 | 2.4:-37445900 | MS.gene68653:CDS |
ACTGCAATCATTGATGGTAC+TGG | 0.512877 | 2.4:-37445852 | MS.gene68653:CDS |
AAAGCCCTGCGTACCGAGAT+CGG | 0.516139 | 2.4:+37445908 | None:intergenic |
GTTGTTTCTTGTGTTTGGGA+TGG | 0.516674 | 2.4:-37446939 | MS.gene68653:CDS |
GCACGATACAAAAGCAGAGC+TGG | 0.518122 | 2.4:+37446029 | None:intergenic |
TATTCTTGATTCGAGTTGCA+AGG | 0.520085 | 2.4:-37445725 | MS.gene68653:CDS |
GAATCAAGGGTTGAATTGGT+TGG | 0.521050 | 2.4:+37447088 | None:intergenic |
ATTGAAATGAGTGTTGAAAC+GGG | 0.522480 | 2.4:-37446551 | MS.gene68653:CDS |
GTGTTTGGGATGGTGGGCAG+CGG | 0.524244 | 2.4:-37446929 | MS.gene68653:CDS |
GAAACATAACCTGCTAAAAG+TGG | 0.525372 | 2.4:+37445807 | None:intergenic |
GTTGAATTGGTTGGAACTGT+GGG | 0.528850 | 2.4:+37447097 | None:intergenic |
GGAATTCGCATACCTCGGTT+GGG | 0.531280 | 2.4:-37446733 | MS.gene68653:CDS |
GAATCGATAGAAACAAGAAC+AGG | 0.531762 | 2.4:+37446051 | None:intergenic |
CAAAGAGGGGATTGATAATG+GGG | 0.532878 | 2.4:-37446760 | MS.gene68653:CDS |
GTACGCAGGGCTTTAGTGGT+GGG | 0.535609 | 2.4:-37445899 | MS.gene68653:CDS |
TTAGAGGCGTGGAAAATACC+TGG | 0.539044 | 2.4:-37446434 | MS.gene68653:CDS |
ATCTATCTCACAAAACTGCT+GGG | 0.540237 | 2.4:-37446169 | MS.gene68653:CDS |
ATTCAACCCTTGATTCGGGT+TGG | 0.543048 | 2.4:-37447081 | MS.gene68653:CDS |
AGTTGTTGGGAATTGGCTTG+GGG | 0.544754 | 2.4:-37446786 | MS.gene68653:CDS |
GCTGCCGATCTCGGTACGCA+GGG | 0.553404 | 2.4:-37445912 | MS.gene68653:CDS |
ATGGAACCCGGGGAACTCAC+CGG | 0.555786 | 2.4:-37447048 | MS.gene68653:CDS |
AAAGCAAACGGAGCGACTCC+AGG | 0.556148 | 2.4:+37446416 | None:intergenic |
GGTTGAATTGGTTGGAACTG+TGG | 0.556170 | 2.4:+37447096 | None:intergenic |
AGGGTTTGCGAGTCCTGGAA+TGG | 0.556603 | 2.4:-37446576 | MS.gene68653:CDS |
AATTGAAATGAGTGTTGAAA+CGG | 0.556957 | 2.4:-37446552 | MS.gene68653:CDS |
GCAGTTGTAATTAGCGAGTA+CGG | 0.564151 | 2.4:+37445939 | None:intergenic |
ATTGATGGTACTGGTTCTGT+TGG | 0.568619 | 2.4:-37445843 | MS.gene68653:CDS |
GTTATGTTTCAACTAAGGGA+TGG | 0.570029 | 2.4:-37445794 | MS.gene68653:CDS |
GGGAACTCACCGGCTTGGCG+AGG | 0.571530 | 2.4:-37447038 | MS.gene68653:CDS |
CGAGATCAACCTCGCCAAGC+CGG | 0.572872 | 2.4:+37447029 | None:intergenic |
GGTTTGATGTTCATGTGTTG+GGG | 0.575219 | 2.4:-37446874 | MS.gene68653:CDS |
TTGGCTTGGGGAATCAAAGA+GGG | 0.575740 | 2.4:-37446774 | MS.gene68653:CDS |
ATGTATTTGGCTGGTCATGT+TGG | 0.577593 | 2.4:-37446980 | MS.gene68653:CDS |
CCAACAACTGCAACAACACA+AGG | 0.578535 | 2.4:+37446800 | None:intergenic |
AAATCCAGAAAGAAACATCA+AGG | 0.579928 | 2.4:+37445974 | None:intergenic |
GTTCTAGGCGGAATCACCGC+CGG | 0.584479 | 2.4:-37446116 | MS.gene68653:CDS |
TGTTGAAACGGGCGGTGCAG+AGG | 0.585857 | 2.4:-37446540 | MS.gene68653:CDS |
CTCGCAAACCCTATATCCAC+GGG | 0.599278 | 2.4:+37446587 | None:intergenic |
TCTGCAGAAAGTCGAATCAG+AGG | 0.600067 | 2.4:-37446516 | MS.gene68653:CDS |
AGGCGGCCAACCCGAATCAA+GGG | 0.601656 | 2.4:+37447075 | None:intergenic |
ACTCGCAAACCCTATATCCA+CGG | 0.607916 | 2.4:+37446586 | None:intergenic |
ACCAGCCAAATACATGCCAA+TGG | 0.609265 | 2.4:+37446988 | None:intergenic |
CTCGCTAATTACAACTGCTG+TGG | 0.611850 | 2.4:-37445934 | MS.gene68653:CDS |
TTGGTGATAGGATTGATTTG+AGG | 0.616292 | 2.4:-37446961 | MS.gene68653:CDS |
CCTGTGTGCCTTATGTAGAA+GGG | 0.616762 | 2.4:+37446344 | None:intergenic |
CCCTTCTACATAAGGCACAC+AGG | 0.627165 | 2.4:-37446344 | MS.gene68653:intron |
GATATGGAATTCGCATACCT+CGG | 0.635544 | 2.4:-37446738 | MS.gene68653:CDS |
CCCCGGGTTCCATTAAAAGG+CGG | 0.642431 | 2.4:+37447058 | None:intergenic |
GAGTGTTTCAGTCAATTGGG+TGG | 0.653771 | 2.4:-37446823 | MS.gene68653:CDS |
GTTTCTTGTTGTGAATCCCG+TGG | 0.657187 | 2.4:-37446603 | MS.gene68653:CDS |
TGGCTTGGGGAATCAAAGAG+GGG | 0.677167 | 2.4:-37446773 | MS.gene68653:CDS |
ACCAATGATATTCCCAACCG+AGG | 0.679777 | 2.4:+37446721 | None:intergenic |
CATATCAGAAATGAAACCGG+CGG | 0.690344 | 2.4:+37446100 | None:intergenic |
GATATTGGAGGAGTTCTAGG+CGG | 0.700532 | 2.4:-37446128 | MS.gene68653:CDS |
GAAATGAGTGTTGAAACGGG+CGG | 0.861509 | 2.4:-37446548 | MS.gene68653:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TATGTAAACTAAATAAGATA+TGG | + | chr2.4:37446563-37446582 | None:intergenic | 15.0% |
!! | CTTTCAACAATATTTGATAT+TGG | - | chr2.4:37446680-37446699 | MS.gene68653:CDS | 20.0% |
!!! | AATTTTGATCATTTTCATTG+GGG | - | chr2.4:37446184-37446203 | MS.gene68653:CDS | 20.0% |
!!! | GAATTTTGATCATTTTCATT+GGG | - | chr2.4:37446183-37446202 | MS.gene68653:CDS | 20.0% |
!!! | GTTTTTTTACGATACTTTTT+GGG | - | chr2.4:37445916-37445935 | MS.gene68653:CDS | 20.0% |
!!! | TTGAATTTGTTATTTTGTGT+TGG | - | chr2.4:37446610-37446629 | MS.gene68653:CDS | 20.0% |
! | AAAAAGAGACAAAAAGCAAA+CGG | + | chr2.4:37446422-37446441 | None:intergenic | 25.0% |
! | AATCATATCAGAAATGAAAC+CGG | + | chr2.4:37446729-37446748 | None:intergenic | 25.0% |
! | ATGAAAATGATCAAAATTCC+AGG | + | chr2.4:37446182-37446201 | None:intergenic | 25.0% |
! | TCAACAATATTTGATATTGG+AGG | - | chr2.4:37446683-37446702 | MS.gene68653:CDS | 25.0% |
!! | AGAACACTTTTAACAATACT+AGG | + | chr2.4:37445702-37445721 | None:intergenic | 25.0% |
!!! | AATTGAAATGAGTGTTGAAA+CGG | - | chr2.4:37446271-37446290 | MS.gene68653:intron | 25.0% |
!!! | AGTATTGTTAAAAGTGTTCT+GGG | - | chr2.4:37445702-37445721 | MS.gene68653:CDS | 25.0% |
!!! | GGAATTTTGATCATTTTCAT+TGG | - | chr2.4:37446182-37446201 | MS.gene68653:CDS | 25.0% |
!!! | GGTTTTTTTACGATACTTTT+TGG | - | chr2.4:37445915-37445934 | MS.gene68653:CDS | 25.0% |
!!! | TAGTATTGTTAAAAGTGTTC+TGG | - | chr2.4:37445701-37445720 | MS.gene68653:CDS | 25.0% |
AAATCCAGAAAGAAACATCA+AGG | + | chr2.4:37446852-37446871 | None:intergenic | 30.0% | |
TTGCTTACACTTTCTTGTAT+TGG | - | chr2.4:37446453-37446472 | MS.gene68653:CDS | 30.0% | |
TTTCTTACTTCTTACTCCAT+TGG | - | chr2.4:37445819-37445838 | MS.gene68653:CDS | 30.0% | |
! | ACACTTTTAACAATACTAGG+AGG | + | chr2.4:37445699-37445718 | None:intergenic | 30.0% |
! | GAATTTGAAATCGAACTATC+AGG | + | chr2.4:37446350-37446369 | None:intergenic | 30.0% |
! | GATGTTTCTTTCTGGATTTT+TGG | - | chr2.4:37446853-37446872 | MS.gene68653:CDS | 30.0% |
!! | ATTGAAATGAGTGTTGAAAC+GGG | - | chr2.4:37446272-37446291 | MS.gene68653:intron | 30.0% |
!!! | TTTACGATACTTTTTGGGTT+AGG | - | chr2.4:37445921-37445940 | MS.gene68653:CDS | 30.0% |
AACCAATTCAACCCTTGATT+CGG | - | chr2.4:37445737-37445756 | MS.gene68653:CDS | 35.0% | |
AATCTATCTCACAAAACTGC+TGG | - | chr2.4:37446653-37446672 | MS.gene68653:CDS | 35.0% | |
ACTGTTACTGCAATCATTGA+TGG | - | chr2.4:37446965-37446984 | MS.gene68653:CDS | 35.0% | |
AGCAGGTTATGTTTCAACTA+AGG | - | chr2.4:37447024-37447043 | MS.gene68653:CDS | 35.0% | |
ATCAAAGAGGGGATTGATAA+TGG | - | chr2.4:37446061-37446080 | MS.gene68653:CDS | 35.0% | |
ATCACCTTGATGTTTCTTTC+TGG | - | chr2.4:37446845-37446864 | MS.gene68653:CDS | 35.0% | |
ATCTATCTCACAAAACTGCT+GGG | - | chr2.4:37446654-37446673 | MS.gene68653:CDS | 35.0% | |
ATTGGTTACCCTTCTACATA+AGG | - | chr2.4:37446471-37446490 | MS.gene68653:CDS | 35.0% | |
CTCATTTCAATTTCCATTCC+AGG | + | chr2.4:37446263-37446282 | None:intergenic | 35.0% | |
GAAACATAACCTGCTAAAAG+TGG | + | chr2.4:37447019-37447038 | None:intergenic | 35.0% | |
GAATCGATAGAAACAAGAAC+AGG | + | chr2.4:37446775-37446794 | None:intergenic | 35.0% | |
GCAGGTTATGTTTCAACTAA+GGG | - | chr2.4:37447025-37447044 | MS.gene68653:CDS | 35.0% | |
GTTATGTTTCAACTAAGGGA+TGG | - | chr2.4:37447029-37447048 | MS.gene68653:CDS | 35.0% | |
TCAAATTCTTCGTCTGCTAT+TGG | - | chr2.4:37446362-37446381 | MS.gene68653:CDS | 35.0% | |
TGGTTTGATGTTCATGTGTT+GGG | - | chr2.4:37445948-37445967 | MS.gene68653:CDS | 35.0% | |
TTACTCCATTGGCATGTATT+TGG | - | chr2.4:37445830-37445849 | MS.gene68653:CDS | 35.0% | |
TTTGATATTGGAGGAGTTCT+AGG | - | chr2.4:37446692-37446711 | MS.gene68653:CDS | 35.0% | |
! | ATTGGTTCAGTTATTGCTTC+GGG | - | chr2.4:37446119-37446138 | MS.gene68653:CDS | 35.0% |
! | GAGATAAGAGAGAAGTTTTC+AGG | - | chr2.4:37447124-37447143 | MS.gene68653:CDS | 35.0% |
! | GATCATTTTCATTGGGGTTT+TGG | - | chr2.4:37446190-37446209 | MS.gene68653:intron | 35.0% |
! | GTTTCGTCTATTTTCTTTGC+TGG | - | chr2.4:37447073-37447092 | MS.gene68653:CDS | 35.0% |
! | TCAAAGAGGGGATTGATAAT+GGG | - | chr2.4:37446062-37446081 | MS.gene68653:CDS | 35.0% |
!! | CATTGGTTCAGTTATTGCTT+CGG | - | chr2.4:37446118-37446137 | MS.gene68653:CDS | 35.0% |
!! | GTCTGCTATTGGATTTTTAG+AGG | - | chr2.4:37446373-37446392 | MS.gene68653:CDS | 35.0% |
!! | TATTCTTGATTCGAGTTGCA+AGG | - | chr2.4:37447098-37447117 | MS.gene68653:CDS | 35.0% |
!! | TGAGGTTGTTTCTTGTGTTT+GGG | - | chr2.4:37445880-37445899 | MS.gene68653:CDS | 35.0% |
!! | TTGAGGTTGTTTCTTGTGTT+TGG | - | chr2.4:37445879-37445898 | MS.gene68653:CDS | 35.0% |
!! | TTGGTGATAGGATTGATTTG+AGG | - | chr2.4:37445862-37445881 | MS.gene68653:CDS | 35.0% |
!!! | CTTTCTGGATTTTTGGTGAA+TGG | - | chr2.4:37446860-37446879 | MS.gene68653:CDS | 35.0% |
!!! | TACTTTTTGGGTTAGGATAC+TGG | - | chr2.4:37445928-37445947 | MS.gene68653:CDS | 35.0% |
!!! | TTATTTTGTGTTGGTTGCAG+CGG | - | chr2.4:37446619-37446638 | MS.gene68653:CDS | 35.0% |
ACCAATTCAACCCTTGATTC+GGG | - | chr2.4:37445738-37445757 | MS.gene68653:CDS | 40.0% | |
CATATCAGAAATGAAACCGG+CGG | + | chr2.4:37446726-37446745 | None:intergenic | 40.0% | |
GAATCAAGGGTTGAATTGGT+TGG | + | chr2.4:37445738-37445757 | None:intergenic | 40.0% | |
GATATGGAATTCGCATACCT+CGG | - | chr2.4:37446085-37446104 | MS.gene68653:CDS | 40.0% | |
GCAGTTGTAATTAGCGAGTA+CGG | + | chr2.4:37446887-37446906 | None:intergenic | 40.0% | |
GGTTTGATGTTCATGTGTTG+GGG | - | chr2.4:37445949-37445968 | MS.gene68653:CDS | 40.0% | |
GTTGAATTGGTTGGAACTGT+GGG | + | chr2.4:37445729-37445748 | None:intergenic | 40.0% | |
TTGTGAATCCCGTGGATATA+GGG | - | chr2.4:37446228-37446247 | MS.gene68653:intron | 40.0% | |
TTGTTGCAGTTGTTGGGAAT+TGG | - | chr2.4:37446030-37446049 | MS.gene68653:CDS | 40.0% | |
! | ACTGCAATCATTGATGGTAC+TGG | - | chr2.4:37446971-37446990 | MS.gene68653:CDS | 40.0% |
! | AGTTATTGCTTCGGGTGTTT+TGG | - | chr2.4:37446127-37446146 | MS.gene68653:CDS | 40.0% |
! | ATGTATTTGGCTGGTCATGT+TGG | - | chr2.4:37445843-37445862 | MS.gene68653:CDS | 40.0% |
! | CTGGTTTGATGTTCATGTGT+TGG | - | chr2.4:37445947-37445966 | MS.gene68653:CDS | 40.0% |
! | CTTGTGTTGTTGCAGTTGTT+GGG | - | chr2.4:37446024-37446043 | MS.gene68653:CDS | 40.0% |
! | GTGGAGTGTTTCAGTCAATT+GGG | - | chr2.4:37445997-37446016 | MS.gene68653:CDS | 40.0% |
! | TGCTTTTGTATCGTGCTTTC+GGG | - | chr2.4:37446801-37446820 | MS.gene68653:CDS | 40.0% |
! | TGTGGAGTGTTTCAGTCAAT+TGG | - | chr2.4:37445996-37446015 | MS.gene68653:CDS | 40.0% |
! | TTTCTTGTGTTTGGGATGGT+GGG | - | chr2.4:37445888-37445907 | MS.gene68653:CDS | 40.0% |
!! | ATTGATGGTACTGGTTCTGT+TGG | - | chr2.4:37446980-37446999 | MS.gene68653:CDS | 40.0% |
!! | CAAAGAGGGGATTGATAATG+GGG | - | chr2.4:37446063-37446082 | MS.gene68653:CDS | 40.0% |
!! | CTATTGGATTTTTAGAGGCG+TGG | - | chr2.4:37446378-37446397 | MS.gene68653:CDS | 40.0% |
!! | CTGCTTTTGTATCGTGCTTT+CGG | - | chr2.4:37446800-37446819 | MS.gene68653:CDS | 40.0% |
!! | GTTGTTTCTTGTGTTTGGGA+TGG | - | chr2.4:37445884-37445903 | MS.gene68653:CDS | 40.0% |
!!! | CATGTGTTGGGGTTTTTTGT+CGG | - | chr2.4:37445960-37445979 | MS.gene68653:CDS | 40.0% |
!!! | GGGTGTTTTGGAATTTGGAT+GGG | - | chr2.4:37446139-37446158 | MS.gene68653:CDS | 40.0% |
!!! | GGTGTTTTGGAATTTGGATG+GGG | - | chr2.4:37446140-37446159 | MS.gene68653:CDS | 40.0% |
!!! | TTTTGGAATTTGGATGGGGT+TGG | - | chr2.4:37446144-37446163 | MS.gene68653:CDS | 40.0% |
ACCAATGATATTCCCAACCG+AGG | + | chr2.4:37446105-37446124 | None:intergenic | 45.0% | |
ACCAGCCAAATACATGCCAA+TGG | + | chr2.4:37445838-37445857 | None:intergenic | 45.0% | |
ACCCGAATCAAGGGTTGAAT+TGG | + | chr2.4:37445742-37445761 | None:intergenic | 45.0% | |
ACCTCGGTTGGGAATATCAT+TGG | - | chr2.4:37446101-37446120 | MS.gene68653:CDS | 45.0% | |
ACCTGTGTGCCTTATGTAGA+AGG | + | chr2.4:37446483-37446502 | None:intergenic | 45.0% | |
ACTCGCAAACCCTATATCCA+CGG | + | chr2.4:37446240-37446259 | None:intergenic | 45.0% | |
CCAACAACTGCAACAACACA+AGG | + | chr2.4:37446026-37446045 | None:intergenic | 45.0% | |
CCTGTGTGCCTTATGTAGAA+GGG | + | chr2.4:37446482-37446501 | None:intergenic | 45.0% | |
CTCGCTAATTACAACTGCTG+TGG | - | chr2.4:37446889-37446908 | MS.gene68653:CDS | 45.0% | |
GAGTGTTTCAGTCAATTGGG+TGG | - | chr2.4:37446000-37446019 | MS.gene68653:CDS | 45.0% | |
GGTTGAATTGGTTGGAACTG+TGG | + | chr2.4:37445730-37445749 | None:intergenic | 45.0% | |
GTTGTGAATCCCGTGGATAT+AGG | - | chr2.4:37446227-37446246 | MS.gene68653:intron | 45.0% | |
TCCATTGGCATGTATTTGGC+TGG | - | chr2.4:37445834-37445853 | MS.gene68653:CDS | 45.0% | |
TCTGCAGAAAGTCGAATCAG+AGG | - | chr2.4:37446307-37446326 | MS.gene68653:intron | 45.0% | |
! | CAGTTGTTGGGAATTGGCTT+GGG | - | chr2.4:37446036-37446055 | MS.gene68653:CDS | 45.0% |
! | CCTTGTGTTGTTGCAGTTGT+TGG | - | chr2.4:37446023-37446042 | MS.gene68653:CDS | 45.0% |
! | CTTTAGTGGTGGGAATTCTC+GGG | - | chr2.4:37446934-37446953 | MS.gene68653:CDS | 45.0% |
! | GCTTTAGTGGTGGGAATTCT+CGG | - | chr2.4:37446933-37446952 | MS.gene68653:CDS | 45.0% |
! | GTCGGTGTTCAGATTGTTTG+TGG | - | chr2.4:37445978-37445997 | MS.gene68653:CDS | 45.0% |
! | GTTTCTTGTGTTTGGGATGG+TGG | - | chr2.4:37445887-37445906 | MS.gene68653:CDS | 45.0% |
! | GTTTCTTGTTGTGAATCCCG+TGG | - | chr2.4:37446220-37446239 | MS.gene68653:intron | 45.0% |
! | TTAGAGGCGTGGAAAATACC+TGG | - | chr2.4:37446389-37446408 | MS.gene68653:CDS | 45.0% |
!! | AGTTGTTGGGAATTGGCTTG+GGG | - | chr2.4:37446037-37446056 | MS.gene68653:CDS | 45.0% |
!! | ATTCAACCCTTGATTCGGGT+TGG | - | chr2.4:37445742-37445761 | MS.gene68653:CDS | 45.0% |
!! | ATTGGCTTGGGGAATCAAAG+AGG | - | chr2.4:37446048-37446067 | MS.gene68653:CDS | 45.0% |
!! | GAAATGAGTGTTGAAACGGG+CGG | - | chr2.4:37446275-37446294 | MS.gene68653:intron | 45.0% |
!! | GATATTGGAGGAGTTCTAGG+CGG | - | chr2.4:37446695-37446714 | MS.gene68653:CDS | 45.0% |
!! | GGGGATTGATAATGGGGATA+TGG | - | chr2.4:37446069-37446088 | MS.gene68653:CDS | 45.0% |
!! | TTGGCTTGGGGAATCAAAGA+GGG | - | chr2.4:37446049-37446068 | MS.gene68653:CDS | 45.0% |
!!! | CGGGTGTTTTGGAATTTGGA+TGG | - | chr2.4:37446138-37446157 | MS.gene68653:CDS | 45.0% |
!!! | GCTTCGGGTGTTTTGGAATT+TGG | - | chr2.4:37446134-37446153 | MS.gene68653:CDS | 45.0% |
CCCTTCTACATAAGGCACAC+AGG | - | chr2.4:37446479-37446498 | MS.gene68653:CDS | 50.0% | |
CTCGCAAACCCTATATCCAC+GGG | + | chr2.4:37446239-37446258 | None:intergenic | 50.0% | |
GATATAGGGTTTGCGAGTCC+TGG | - | chr2.4:37446242-37446261 | MS.gene68653:intron | 50.0% | |
GCACGATACAAAAGCAGAGC+TGG | + | chr2.4:37446797-37446816 | None:intergenic | 50.0% | |
GCAGTTGTTGGGAATTGGCT+TGG | - | chr2.4:37446035-37446054 | MS.gene68653:CDS | 50.0% | |
GGAATTCGCATACCTCGGTT+GGG | - | chr2.4:37446090-37446109 | MS.gene68653:CDS | 50.0% | |
GTTCCCCGGGTTCCATTAAA+AGG | + | chr2.4:37445771-37445790 | None:intergenic | 50.0% | |
TGGAATTCGCATACCTCGGT+TGG | - | chr2.4:37446089-37446108 | MS.gene68653:CDS | 50.0% | |
! | TGGCTTGGGGAATCAAAGAG+GGG | - | chr2.4:37446050-37446069 | MS.gene68653:CDS | 50.0% |
!! | GCTCTTGGACCACTTTTAGC+AGG | - | chr2.4:37447007-37447026 | MS.gene68653:CDS | 50.0% |
!! | TGGCTGGTCATGTTGGTGAT+AGG | - | chr2.4:37445850-37445869 | MS.gene68653:CDS | 50.0% |
AAAGCAAACGGAGCGACTCC+AGG | + | chr2.4:37446410-37446429 | None:intergenic | 55.0% | |
AAAGCCCTGCGTACCGAGAT+CGG | + | chr2.4:37446918-37446937 | None:intergenic | 55.0% | |
AGGGTTTGCGAGTCCTGGAA+TGG | - | chr2.4:37446247-37446266 | MS.gene68653:intron | 55.0% | |
CCCCGGGTTCCATTAAAAGG+CGG | + | chr2.4:37445768-37445787 | None:intergenic | 55.0% | |
GGTTCTGTTGGAGCTGCTCT+TGG | - | chr2.4:37446992-37447011 | MS.gene68653:CDS | 55.0% | |
! | CCGCCTTTTAATGGAACCCG+GGG | - | chr2.4:37445765-37445784 | MS.gene68653:CDS | 55.0% |
! | GCCGCCTTTTAATGGAACCC+GGG | - | chr2.4:37445764-37445783 | MS.gene68653:CDS | 55.0% |
! | GGCCGCCTTTTAATGGAACC+CGG | - | chr2.4:37445763-37445782 | MS.gene68653:CDS | 55.0% |
! | GTACGCAGGGCTTTAGTGGT+GGG | - | chr2.4:37446924-37446943 | MS.gene68653:CDS | 55.0% |
!! | TGGATGGGGTTGGTCGTTTG+TGG | - | chr2.4:37446154-37446173 | MS.gene68653:CDS | 55.0% |
!!! | TCGGGTTGGCCGCCTTTTAA+TGG | - | chr2.4:37445756-37445775 | MS.gene68653:CDS | 55.0% |
AAGGCGGCCAACCCGAATCA+AGG | + | chr2.4:37445752-37445771 | None:intergenic | 60.0% | |
ACTGCTGTGGCTGCCGATCT+CGG | - | chr2.4:37446902-37446921 | MS.gene68653:CDS | 60.0% | |
AGGCGGCCAACCCGAATCAA+GGG | + | chr2.4:37445751-37445770 | None:intergenic | 60.0% | |
ATGGAACCCGGGGAACTCAC+CGG | - | chr2.4:37445775-37445794 | MS.gene68653:CDS | 60.0% | |
CGAGATCAACCTCGCCAAGC+CGG | + | chr2.4:37445797-37445816 | None:intergenic | 60.0% | |
TGGTGGGAATTCTCGGGCAC+TGG | - | chr2.4:37446940-37446959 | MS.gene68653:CDS | 60.0% | |
TGTTGAAACGGGCGGTGCAG+AGG | - | chr2.4:37446283-37446302 | MS.gene68653:intron | 60.0% | |
! | CTCGGTACGCAGGGCTTTAG+TGG | - | chr2.4:37446920-37446939 | MS.gene68653:CDS | 60.0% |
! | GGTACGCAGGGCTTTAGTGG+TGG | - | chr2.4:37446923-37446942 | MS.gene68653:CDS | 60.0% |
! | GGTTGGTCGTTTGTGGTGCC+TGG | - | chr2.4:37446161-37446180 | MS.gene68653:CDS | 60.0% |
! | GTTCTAGGCGGAATCACCGC+CGG | - | chr2.4:37446707-37446726 | MS.gene68653:CDS | 60.0% |
!! | GTGTTGGTTGCAGCGGTTGC+TGG | - | chr2.4:37446626-37446645 | MS.gene68653:CDS | 60.0% |
!! | GTGTTTGGGATGGTGGGCAG+CGG | - | chr2.4:37445894-37445913 | MS.gene68653:CDS | 60.0% |
GCTGCCGATCTCGGTACGCA+GGG | - | chr2.4:37446911-37446930 | MS.gene68653:CDS | 65.0% | |
CGCCAAGCCGGTGAGTTCCC+CGG | + | chr2.4:37445785-37445804 | None:intergenic | 70.0% | |
GCCAAGCCGGTGAGTTCCCC+GGG | + | chr2.4:37445784-37445803 | None:intergenic | 70.0% | |
GGCTGCCGATCTCGGTACGC+AGG | - | chr2.4:37446910-37446929 | MS.gene68653:CDS | 70.0% | |
! | ACCCGGGGAACTCACCGGCT+TGG | - | chr2.4:37445780-37445799 | MS.gene68653:CDS | 70.0% |
!! | GGGAACTCACCGGCTTGGCG+AGG | - | chr2.4:37445785-37445804 | MS.gene68653:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 37445692 | 37447153 | 37445692 | ID=MS.gene68653 |
chr2.4 | mRNA | 37445692 | 37447153 | 37445692 | ID=MS.gene68653.t1;Parent=MS.gene68653 |
chr2.4 | exon | 37446345 | 37447153 | 37446345 | ID=MS.gene68653.t1.exon1;Parent=MS.gene68653.t1 |
chr2.4 | CDS | 37446345 | 37447153 | 37446345 | ID=cds.MS.gene68653.t1;Parent=MS.gene68653.t1 |
chr2.4 | exon | 37445692 | 37446206 | 37445692 | ID=MS.gene68653.t1.exon2;Parent=MS.gene68653.t1 |
chr2.4 | CDS | 37445692 | 37446206 | 37445692 | ID=cds.MS.gene68653.t1;Parent=MS.gene68653.t1 |
Gene Sequence |
Protein sequence |