AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene68653


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 121 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTACTCCATTGGCATGTATT+TGG 0.217319 2.4:-37446993 MS.gene68653:CDS
ATCACCTTGATGTTTCTTTC+TGG 0.224719 2.4:-37445978 MS.gene68653:CDS
TTGAGGTTGTTTCTTGTGTT+TGG 0.258719 2.4:-37446944 MS.gene68653:CDS
CCTTGTGTTGTTGCAGTTGT+TGG 0.271567 2.4:-37446800 MS.gene68653:CDS
CAGTTGTTGGGAATTGGCTT+GGG 0.271735 2.4:-37446787 MS.gene68653:CDS
TAGTATTGTTAAAAGTGTTC+TGG 0.280648 2.4:-37447122 MS.gene68653:CDS
TTTGATATTGGAGGAGTTCT+AGG 0.290006 2.4:-37446131 MS.gene68653:CDS
CTCATTTCAATTTCCATTCC+AGG 0.291532 2.4:+37446563 None:intergenic
ATCAAAGAGGGGATTGATAA+TGG 0.292694 2.4:-37446762 MS.gene68653:CDS
AGTTATTGCTTCGGGTGTTT+TGG 0.295231 2.4:-37446696 MS.gene68653:CDS
TCAAATTCTTCGTCTGCTAT+TGG 0.299829 2.4:-37446461 MS.gene68653:CDS
TTGCTTACACTTTCTTGTAT+TGG 0.304564 2.4:-37446370 MS.gene68653:CDS
CTTTCAACAATATTTGATAT+TGG 0.314253 2.4:-37446143 MS.gene68653:CDS
TGTGGAGTGTTTCAGTCAAT+TGG 0.315612 2.4:-37446827 MS.gene68653:CDS
GTTCCCCGGGTTCCATTAAA+AGG 0.330180 2.4:+37447055 None:intergenic
ACCTGTGTGCCTTATGTAGA+AGG 0.333717 2.4:+37446343 None:intergenic
TGAGGTTGTTTCTTGTGTTT+GGG 0.335721 2.4:-37446943 MS.gene68653:CDS
TGGTTTGATGTTCATGTGTT+GGG 0.336491 2.4:-37446875 MS.gene68653:CDS
GTGTTGGTTGCAGCGGTTGC+TGG 0.336822 2.4:-37446197 MS.gene68653:intron
CATTGGTTCAGTTATTGCTT+CGG 0.342494 2.4:-37446705 MS.gene68653:CDS
GCTTTAGTGGTGGGAATTCT+CGG 0.342732 2.4:-37445890 MS.gene68653:CDS
AACCAATTCAACCCTTGATT+CGG 0.343395 2.4:-37447086 MS.gene68653:CDS
GGTTCTGTTGGAGCTGCTCT+TGG 0.349690 2.4:-37445831 MS.gene68653:CDS
GGGGATTGATAATGGGGATA+TGG 0.364452 2.4:-37446754 MS.gene68653:CDS
ACCAATTCAACCCTTGATTC+GGG 0.365317 2.4:-37447085 MS.gene68653:CDS
TCAAAGAGGGGATTGATAAT+GGG 0.369497 2.4:-37446761 MS.gene68653:CDS
GGTTGGTCGTTTGTGGTGCC+TGG 0.375096 2.4:-37446662 MS.gene68653:CDS
ACCCGAATCAAGGGTTGAAT+TGG 0.376330 2.4:+37447084 None:intergenic
AGCAGGTTATGTTTCAACTA+AGG 0.376999 2.4:-37445799 MS.gene68653:CDS
TTGTGAATCCCGTGGATATA+GGG 0.382740 2.4:-37446595 MS.gene68653:CDS
CTCGGTACGCAGGGCTTTAG+TGG 0.382958 2.4:-37445903 MS.gene68653:CDS
GCAGTTGTTGGGAATTGGCT+TGG 0.384000 2.4:-37446788 MS.gene68653:CDS
GTTTCTTGTGTTTGGGATGG+TGG 0.396297 2.4:-37446936 MS.gene68653:CDS
GCCAAGCCGGTGAGTTCCCC+GGG 0.400238 2.4:+37447042 None:intergenic
TTGTTGCAGTTGTTGGGAAT+TGG 0.403901 2.4:-37446793 MS.gene68653:CDS
ATGAAAATGATCAAAATTCC+AGG 0.406929 2.4:+37446644 None:intergenic
TCCATTGGCATGTATTTGGC+TGG 0.414022 2.4:-37446989 MS.gene68653:CDS
TGGCTGGTCATGTTGGTGAT+AGG 0.414837 2.4:-37446973 MS.gene68653:CDS
GTTGTGAATCCCGTGGATAT+AGG 0.415165 2.4:-37446596 MS.gene68653:CDS
AGTATTGTTAAAAGTGTTCT+GGG 0.416808 2.4:-37447121 MS.gene68653:CDS
CTTGTGTTGTTGCAGTTGTT+GGG 0.419466 2.4:-37446799 MS.gene68653:CDS
GAATTTGAAATCGAACTATC+AGG 0.420709 2.4:+37446476 None:intergenic
ACCTCGGTTGGGAATATCAT+TGG 0.423859 2.4:-37446722 MS.gene68653:CDS
ATTGGTTACCCTTCTACATA+AGG 0.433887 2.4:-37446352 MS.gene68653:CDS
ATTGGTTCAGTTATTGCTTC+GGG 0.436836 2.4:-37446704 MS.gene68653:CDS
CTGGTTTGATGTTCATGTGT+TGG 0.438300 2.4:-37446876 MS.gene68653:CDS
CGCCAAGCCGGTGAGTTCCC+CGG 0.439386 2.4:+37447041 None:intergenic
TGGATGGGGTTGGTCGTTTG+TGG 0.439831 2.4:-37446669 MS.gene68653:CDS
ACTGTTACTGCAATCATTGA+TGG 0.445070 2.4:-37445858 MS.gene68653:CDS
TTTCTTACTTCTTACTCCAT+TGG 0.445900 2.4:-37447004 MS.gene68653:CDS
AATCTATCTCACAAAACTGC+TGG 0.446010 2.4:-37446170 MS.gene68653:CDS
GTGGAGTGTTTCAGTCAATT+GGG 0.451035 2.4:-37446826 MS.gene68653:CDS
GTCGGTGTTCAGATTGTTTG+TGG 0.462172 2.4:-37446845 MS.gene68653:CDS
GATATAGGGTTTGCGAGTCC+TGG 0.467048 2.4:-37446581 MS.gene68653:CDS
TGGAATTCGCATACCTCGGT+TGG 0.474948 2.4:-37446734 MS.gene68653:CDS
GGCTGCCGATCTCGGTACGC+AGG 0.479417 2.4:-37445913 MS.gene68653:CDS
GCAGGTTATGTTTCAACTAA+GGG 0.481100 2.4:-37445798 MS.gene68653:CDS
CTTTAGTGGTGGGAATTCTC+GGG 0.483451 2.4:-37445889 MS.gene68653:CDS
ATTGGCTTGGGGAATCAAAG+AGG 0.486300 2.4:-37446775 MS.gene68653:CDS
ACTGCTGTGGCTGCCGATCT+CGG 0.489455 2.4:-37445921 MS.gene68653:CDS
TGGTGGGAATTCTCGGGCAC+TGG 0.495438 2.4:-37445883 MS.gene68653:CDS
AAGGCGGCCAACCCGAATCA+AGG 0.499130 2.4:+37447074 None:intergenic
TTTCTTGTGTTTGGGATGGT+GGG 0.499647 2.4:-37446935 MS.gene68653:CDS
ACCCGGGGAACTCACCGGCT+TGG 0.506049 2.4:-37447043 MS.gene68653:CDS
AATCATATCAGAAATGAAAC+CGG 0.508019 2.4:+37446097 None:intergenic
TCAACAATATTTGATATTGG+AGG 0.508821 2.4:-37446140 MS.gene68653:CDS
GGTACGCAGGGCTTTAGTGG+TGG 0.512487 2.4:-37445900 MS.gene68653:CDS
ACTGCAATCATTGATGGTAC+TGG 0.512877 2.4:-37445852 MS.gene68653:CDS
AAAGCCCTGCGTACCGAGAT+CGG 0.516139 2.4:+37445908 None:intergenic
GTTGTTTCTTGTGTTTGGGA+TGG 0.516674 2.4:-37446939 MS.gene68653:CDS
GCACGATACAAAAGCAGAGC+TGG 0.518122 2.4:+37446029 None:intergenic
TATTCTTGATTCGAGTTGCA+AGG 0.520085 2.4:-37445725 MS.gene68653:CDS
GAATCAAGGGTTGAATTGGT+TGG 0.521050 2.4:+37447088 None:intergenic
ATTGAAATGAGTGTTGAAAC+GGG 0.522480 2.4:-37446551 MS.gene68653:CDS
GTGTTTGGGATGGTGGGCAG+CGG 0.524244 2.4:-37446929 MS.gene68653:CDS
GAAACATAACCTGCTAAAAG+TGG 0.525372 2.4:+37445807 None:intergenic
GTTGAATTGGTTGGAACTGT+GGG 0.528850 2.4:+37447097 None:intergenic
GGAATTCGCATACCTCGGTT+GGG 0.531280 2.4:-37446733 MS.gene68653:CDS
GAATCGATAGAAACAAGAAC+AGG 0.531762 2.4:+37446051 None:intergenic
CAAAGAGGGGATTGATAATG+GGG 0.532878 2.4:-37446760 MS.gene68653:CDS
GTACGCAGGGCTTTAGTGGT+GGG 0.535609 2.4:-37445899 MS.gene68653:CDS
TTAGAGGCGTGGAAAATACC+TGG 0.539044 2.4:-37446434 MS.gene68653:CDS
ATCTATCTCACAAAACTGCT+GGG 0.540237 2.4:-37446169 MS.gene68653:CDS
ATTCAACCCTTGATTCGGGT+TGG 0.543048 2.4:-37447081 MS.gene68653:CDS
AGTTGTTGGGAATTGGCTTG+GGG 0.544754 2.4:-37446786 MS.gene68653:CDS
GCTGCCGATCTCGGTACGCA+GGG 0.553404 2.4:-37445912 MS.gene68653:CDS
ATGGAACCCGGGGAACTCAC+CGG 0.555786 2.4:-37447048 MS.gene68653:CDS
AAAGCAAACGGAGCGACTCC+AGG 0.556148 2.4:+37446416 None:intergenic
GGTTGAATTGGTTGGAACTG+TGG 0.556170 2.4:+37447096 None:intergenic
AGGGTTTGCGAGTCCTGGAA+TGG 0.556603 2.4:-37446576 MS.gene68653:CDS
AATTGAAATGAGTGTTGAAA+CGG 0.556957 2.4:-37446552 MS.gene68653:CDS
GCAGTTGTAATTAGCGAGTA+CGG 0.564151 2.4:+37445939 None:intergenic
ATTGATGGTACTGGTTCTGT+TGG 0.568619 2.4:-37445843 MS.gene68653:CDS
GTTATGTTTCAACTAAGGGA+TGG 0.570029 2.4:-37445794 MS.gene68653:CDS
GGGAACTCACCGGCTTGGCG+AGG 0.571530 2.4:-37447038 MS.gene68653:CDS
CGAGATCAACCTCGCCAAGC+CGG 0.572872 2.4:+37447029 None:intergenic
GGTTTGATGTTCATGTGTTG+GGG 0.575219 2.4:-37446874 MS.gene68653:CDS
TTGGCTTGGGGAATCAAAGA+GGG 0.575740 2.4:-37446774 MS.gene68653:CDS
ATGTATTTGGCTGGTCATGT+TGG 0.577593 2.4:-37446980 MS.gene68653:CDS
CCAACAACTGCAACAACACA+AGG 0.578535 2.4:+37446800 None:intergenic
AAATCCAGAAAGAAACATCA+AGG 0.579928 2.4:+37445974 None:intergenic
GTTCTAGGCGGAATCACCGC+CGG 0.584479 2.4:-37446116 MS.gene68653:CDS
TGTTGAAACGGGCGGTGCAG+AGG 0.585857 2.4:-37446540 MS.gene68653:CDS
CTCGCAAACCCTATATCCAC+GGG 0.599278 2.4:+37446587 None:intergenic
TCTGCAGAAAGTCGAATCAG+AGG 0.600067 2.4:-37446516 MS.gene68653:CDS
AGGCGGCCAACCCGAATCAA+GGG 0.601656 2.4:+37447075 None:intergenic
ACTCGCAAACCCTATATCCA+CGG 0.607916 2.4:+37446586 None:intergenic
ACCAGCCAAATACATGCCAA+TGG 0.609265 2.4:+37446988 None:intergenic
CTCGCTAATTACAACTGCTG+TGG 0.611850 2.4:-37445934 MS.gene68653:CDS
TTGGTGATAGGATTGATTTG+AGG 0.616292 2.4:-37446961 MS.gene68653:CDS
CCTGTGTGCCTTATGTAGAA+GGG 0.616762 2.4:+37446344 None:intergenic
CCCTTCTACATAAGGCACAC+AGG 0.627165 2.4:-37446344 MS.gene68653:intron
GATATGGAATTCGCATACCT+CGG 0.635544 2.4:-37446738 MS.gene68653:CDS
CCCCGGGTTCCATTAAAAGG+CGG 0.642431 2.4:+37447058 None:intergenic
GAGTGTTTCAGTCAATTGGG+TGG 0.653771 2.4:-37446823 MS.gene68653:CDS
GTTTCTTGTTGTGAATCCCG+TGG 0.657187 2.4:-37446603 MS.gene68653:CDS
TGGCTTGGGGAATCAAAGAG+GGG 0.677167 2.4:-37446773 MS.gene68653:CDS
ACCAATGATATTCCCAACCG+AGG 0.679777 2.4:+37446721 None:intergenic
CATATCAGAAATGAAACCGG+CGG 0.690344 2.4:+37446100 None:intergenic
GATATTGGAGGAGTTCTAGG+CGG 0.700532 2.4:-37446128 MS.gene68653:CDS
GAAATGAGTGTTGAAACGGG+CGG 0.861509 2.4:-37446548 MS.gene68653:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTAAACTAAATAAGATA+TGG + chr2.4:37446563-37446582 None:intergenic 15.0%
!! CTTTCAACAATATTTGATAT+TGG - chr2.4:37446680-37446699 MS.gene68653:CDS 20.0%
!!! AATTTTGATCATTTTCATTG+GGG - chr2.4:37446184-37446203 MS.gene68653:CDS 20.0%
!!! GAATTTTGATCATTTTCATT+GGG - chr2.4:37446183-37446202 MS.gene68653:CDS 20.0%
!!! GTTTTTTTACGATACTTTTT+GGG - chr2.4:37445916-37445935 MS.gene68653:CDS 20.0%
!!! TTGAATTTGTTATTTTGTGT+TGG - chr2.4:37446610-37446629 MS.gene68653:CDS 20.0%
! AAAAAGAGACAAAAAGCAAA+CGG + chr2.4:37446422-37446441 None:intergenic 25.0%
! AATCATATCAGAAATGAAAC+CGG + chr2.4:37446729-37446748 None:intergenic 25.0%
! ATGAAAATGATCAAAATTCC+AGG + chr2.4:37446182-37446201 None:intergenic 25.0%
! TCAACAATATTTGATATTGG+AGG - chr2.4:37446683-37446702 MS.gene68653:CDS 25.0%
!! AGAACACTTTTAACAATACT+AGG + chr2.4:37445702-37445721 None:intergenic 25.0%
!!! AATTGAAATGAGTGTTGAAA+CGG - chr2.4:37446271-37446290 MS.gene68653:intron 25.0%
!!! AGTATTGTTAAAAGTGTTCT+GGG - chr2.4:37445702-37445721 MS.gene68653:CDS 25.0%
!!! GGAATTTTGATCATTTTCAT+TGG - chr2.4:37446182-37446201 MS.gene68653:CDS 25.0%
!!! GGTTTTTTTACGATACTTTT+TGG - chr2.4:37445915-37445934 MS.gene68653:CDS 25.0%
!!! TAGTATTGTTAAAAGTGTTC+TGG - chr2.4:37445701-37445720 MS.gene68653:CDS 25.0%
AAATCCAGAAAGAAACATCA+AGG + chr2.4:37446852-37446871 None:intergenic 30.0%
TTGCTTACACTTTCTTGTAT+TGG - chr2.4:37446453-37446472 MS.gene68653:CDS 30.0%
TTTCTTACTTCTTACTCCAT+TGG - chr2.4:37445819-37445838 MS.gene68653:CDS 30.0%
! ACACTTTTAACAATACTAGG+AGG + chr2.4:37445699-37445718 None:intergenic 30.0%
! GAATTTGAAATCGAACTATC+AGG + chr2.4:37446350-37446369 None:intergenic 30.0%
! GATGTTTCTTTCTGGATTTT+TGG - chr2.4:37446853-37446872 MS.gene68653:CDS 30.0%
!! ATTGAAATGAGTGTTGAAAC+GGG - chr2.4:37446272-37446291 MS.gene68653:intron 30.0%
!!! TTTACGATACTTTTTGGGTT+AGG - chr2.4:37445921-37445940 MS.gene68653:CDS 30.0%
AACCAATTCAACCCTTGATT+CGG - chr2.4:37445737-37445756 MS.gene68653:CDS 35.0%
AATCTATCTCACAAAACTGC+TGG - chr2.4:37446653-37446672 MS.gene68653:CDS 35.0%
ACTGTTACTGCAATCATTGA+TGG - chr2.4:37446965-37446984 MS.gene68653:CDS 35.0%
AGCAGGTTATGTTTCAACTA+AGG - chr2.4:37447024-37447043 MS.gene68653:CDS 35.0%
ATCAAAGAGGGGATTGATAA+TGG - chr2.4:37446061-37446080 MS.gene68653:CDS 35.0%
ATCACCTTGATGTTTCTTTC+TGG - chr2.4:37446845-37446864 MS.gene68653:CDS 35.0%
ATCTATCTCACAAAACTGCT+GGG - chr2.4:37446654-37446673 MS.gene68653:CDS 35.0%
ATTGGTTACCCTTCTACATA+AGG - chr2.4:37446471-37446490 MS.gene68653:CDS 35.0%
CTCATTTCAATTTCCATTCC+AGG + chr2.4:37446263-37446282 None:intergenic 35.0%
GAAACATAACCTGCTAAAAG+TGG + chr2.4:37447019-37447038 None:intergenic 35.0%
GAATCGATAGAAACAAGAAC+AGG + chr2.4:37446775-37446794 None:intergenic 35.0%
GCAGGTTATGTTTCAACTAA+GGG - chr2.4:37447025-37447044 MS.gene68653:CDS 35.0%
GTTATGTTTCAACTAAGGGA+TGG - chr2.4:37447029-37447048 MS.gene68653:CDS 35.0%
TCAAATTCTTCGTCTGCTAT+TGG - chr2.4:37446362-37446381 MS.gene68653:CDS 35.0%
TGGTTTGATGTTCATGTGTT+GGG - chr2.4:37445948-37445967 MS.gene68653:CDS 35.0%
TTACTCCATTGGCATGTATT+TGG - chr2.4:37445830-37445849 MS.gene68653:CDS 35.0%
TTTGATATTGGAGGAGTTCT+AGG - chr2.4:37446692-37446711 MS.gene68653:CDS 35.0%
! ATTGGTTCAGTTATTGCTTC+GGG - chr2.4:37446119-37446138 MS.gene68653:CDS 35.0%
! GAGATAAGAGAGAAGTTTTC+AGG - chr2.4:37447124-37447143 MS.gene68653:CDS 35.0%
! GATCATTTTCATTGGGGTTT+TGG - chr2.4:37446190-37446209 MS.gene68653:intron 35.0%
! GTTTCGTCTATTTTCTTTGC+TGG - chr2.4:37447073-37447092 MS.gene68653:CDS 35.0%
! TCAAAGAGGGGATTGATAAT+GGG - chr2.4:37446062-37446081 MS.gene68653:CDS 35.0%
!! CATTGGTTCAGTTATTGCTT+CGG - chr2.4:37446118-37446137 MS.gene68653:CDS 35.0%
!! GTCTGCTATTGGATTTTTAG+AGG - chr2.4:37446373-37446392 MS.gene68653:CDS 35.0%
!! TATTCTTGATTCGAGTTGCA+AGG - chr2.4:37447098-37447117 MS.gene68653:CDS 35.0%
!! TGAGGTTGTTTCTTGTGTTT+GGG - chr2.4:37445880-37445899 MS.gene68653:CDS 35.0%
!! TTGAGGTTGTTTCTTGTGTT+TGG - chr2.4:37445879-37445898 MS.gene68653:CDS 35.0%
!! TTGGTGATAGGATTGATTTG+AGG - chr2.4:37445862-37445881 MS.gene68653:CDS 35.0%
!!! CTTTCTGGATTTTTGGTGAA+TGG - chr2.4:37446860-37446879 MS.gene68653:CDS 35.0%
!!! TACTTTTTGGGTTAGGATAC+TGG - chr2.4:37445928-37445947 MS.gene68653:CDS 35.0%
!!! TTATTTTGTGTTGGTTGCAG+CGG - chr2.4:37446619-37446638 MS.gene68653:CDS 35.0%
ACCAATTCAACCCTTGATTC+GGG - chr2.4:37445738-37445757 MS.gene68653:CDS 40.0%
CATATCAGAAATGAAACCGG+CGG + chr2.4:37446726-37446745 None:intergenic 40.0%
GAATCAAGGGTTGAATTGGT+TGG + chr2.4:37445738-37445757 None:intergenic 40.0%
GATATGGAATTCGCATACCT+CGG - chr2.4:37446085-37446104 MS.gene68653:CDS 40.0%
GCAGTTGTAATTAGCGAGTA+CGG + chr2.4:37446887-37446906 None:intergenic 40.0%
GGTTTGATGTTCATGTGTTG+GGG - chr2.4:37445949-37445968 MS.gene68653:CDS 40.0%
GTTGAATTGGTTGGAACTGT+GGG + chr2.4:37445729-37445748 None:intergenic 40.0%
TTGTGAATCCCGTGGATATA+GGG - chr2.4:37446228-37446247 MS.gene68653:intron 40.0%
TTGTTGCAGTTGTTGGGAAT+TGG - chr2.4:37446030-37446049 MS.gene68653:CDS 40.0%
! ACTGCAATCATTGATGGTAC+TGG - chr2.4:37446971-37446990 MS.gene68653:CDS 40.0%
! AGTTATTGCTTCGGGTGTTT+TGG - chr2.4:37446127-37446146 MS.gene68653:CDS 40.0%
! ATGTATTTGGCTGGTCATGT+TGG - chr2.4:37445843-37445862 MS.gene68653:CDS 40.0%
! CTGGTTTGATGTTCATGTGT+TGG - chr2.4:37445947-37445966 MS.gene68653:CDS 40.0%
! CTTGTGTTGTTGCAGTTGTT+GGG - chr2.4:37446024-37446043 MS.gene68653:CDS 40.0%
! GTGGAGTGTTTCAGTCAATT+GGG - chr2.4:37445997-37446016 MS.gene68653:CDS 40.0%
! TGCTTTTGTATCGTGCTTTC+GGG - chr2.4:37446801-37446820 MS.gene68653:CDS 40.0%
! TGTGGAGTGTTTCAGTCAAT+TGG - chr2.4:37445996-37446015 MS.gene68653:CDS 40.0%
! TTTCTTGTGTTTGGGATGGT+GGG - chr2.4:37445888-37445907 MS.gene68653:CDS 40.0%
!! ATTGATGGTACTGGTTCTGT+TGG - chr2.4:37446980-37446999 MS.gene68653:CDS 40.0%
!! CAAAGAGGGGATTGATAATG+GGG - chr2.4:37446063-37446082 MS.gene68653:CDS 40.0%
!! CTATTGGATTTTTAGAGGCG+TGG - chr2.4:37446378-37446397 MS.gene68653:CDS 40.0%
!! CTGCTTTTGTATCGTGCTTT+CGG - chr2.4:37446800-37446819 MS.gene68653:CDS 40.0%
!! GTTGTTTCTTGTGTTTGGGA+TGG - chr2.4:37445884-37445903 MS.gene68653:CDS 40.0%
!!! CATGTGTTGGGGTTTTTTGT+CGG - chr2.4:37445960-37445979 MS.gene68653:CDS 40.0%
!!! GGGTGTTTTGGAATTTGGAT+GGG - chr2.4:37446139-37446158 MS.gene68653:CDS 40.0%
!!! GGTGTTTTGGAATTTGGATG+GGG - chr2.4:37446140-37446159 MS.gene68653:CDS 40.0%
!!! TTTTGGAATTTGGATGGGGT+TGG - chr2.4:37446144-37446163 MS.gene68653:CDS 40.0%
ACCAATGATATTCCCAACCG+AGG + chr2.4:37446105-37446124 None:intergenic 45.0%
ACCAGCCAAATACATGCCAA+TGG + chr2.4:37445838-37445857 None:intergenic 45.0%
ACCCGAATCAAGGGTTGAAT+TGG + chr2.4:37445742-37445761 None:intergenic 45.0%
ACCTCGGTTGGGAATATCAT+TGG - chr2.4:37446101-37446120 MS.gene68653:CDS 45.0%
ACCTGTGTGCCTTATGTAGA+AGG + chr2.4:37446483-37446502 None:intergenic 45.0%
ACTCGCAAACCCTATATCCA+CGG + chr2.4:37446240-37446259 None:intergenic 45.0%
CCAACAACTGCAACAACACA+AGG + chr2.4:37446026-37446045 None:intergenic 45.0%
CCTGTGTGCCTTATGTAGAA+GGG + chr2.4:37446482-37446501 None:intergenic 45.0%
CTCGCTAATTACAACTGCTG+TGG - chr2.4:37446889-37446908 MS.gene68653:CDS 45.0%
GAGTGTTTCAGTCAATTGGG+TGG - chr2.4:37446000-37446019 MS.gene68653:CDS 45.0%
GGTTGAATTGGTTGGAACTG+TGG + chr2.4:37445730-37445749 None:intergenic 45.0%
GTTGTGAATCCCGTGGATAT+AGG - chr2.4:37446227-37446246 MS.gene68653:intron 45.0%
TCCATTGGCATGTATTTGGC+TGG - chr2.4:37445834-37445853 MS.gene68653:CDS 45.0%
TCTGCAGAAAGTCGAATCAG+AGG - chr2.4:37446307-37446326 MS.gene68653:intron 45.0%
! CAGTTGTTGGGAATTGGCTT+GGG - chr2.4:37446036-37446055 MS.gene68653:CDS 45.0%
! CCTTGTGTTGTTGCAGTTGT+TGG - chr2.4:37446023-37446042 MS.gene68653:CDS 45.0%
! CTTTAGTGGTGGGAATTCTC+GGG - chr2.4:37446934-37446953 MS.gene68653:CDS 45.0%
! GCTTTAGTGGTGGGAATTCT+CGG - chr2.4:37446933-37446952 MS.gene68653:CDS 45.0%
! GTCGGTGTTCAGATTGTTTG+TGG - chr2.4:37445978-37445997 MS.gene68653:CDS 45.0%
! GTTTCTTGTGTTTGGGATGG+TGG - chr2.4:37445887-37445906 MS.gene68653:CDS 45.0%
! GTTTCTTGTTGTGAATCCCG+TGG - chr2.4:37446220-37446239 MS.gene68653:intron 45.0%
! TTAGAGGCGTGGAAAATACC+TGG - chr2.4:37446389-37446408 MS.gene68653:CDS 45.0%
!! AGTTGTTGGGAATTGGCTTG+GGG - chr2.4:37446037-37446056 MS.gene68653:CDS 45.0%
!! ATTCAACCCTTGATTCGGGT+TGG - chr2.4:37445742-37445761 MS.gene68653:CDS 45.0%
!! ATTGGCTTGGGGAATCAAAG+AGG - chr2.4:37446048-37446067 MS.gene68653:CDS 45.0%
!! GAAATGAGTGTTGAAACGGG+CGG - chr2.4:37446275-37446294 MS.gene68653:intron 45.0%
!! GATATTGGAGGAGTTCTAGG+CGG - chr2.4:37446695-37446714 MS.gene68653:CDS 45.0%
!! GGGGATTGATAATGGGGATA+TGG - chr2.4:37446069-37446088 MS.gene68653:CDS 45.0%
!! TTGGCTTGGGGAATCAAAGA+GGG - chr2.4:37446049-37446068 MS.gene68653:CDS 45.0%
!!! CGGGTGTTTTGGAATTTGGA+TGG - chr2.4:37446138-37446157 MS.gene68653:CDS 45.0%
!!! GCTTCGGGTGTTTTGGAATT+TGG - chr2.4:37446134-37446153 MS.gene68653:CDS 45.0%
CCCTTCTACATAAGGCACAC+AGG - chr2.4:37446479-37446498 MS.gene68653:CDS 50.0%
CTCGCAAACCCTATATCCAC+GGG + chr2.4:37446239-37446258 None:intergenic 50.0%
GATATAGGGTTTGCGAGTCC+TGG - chr2.4:37446242-37446261 MS.gene68653:intron 50.0%
GCACGATACAAAAGCAGAGC+TGG + chr2.4:37446797-37446816 None:intergenic 50.0%
GCAGTTGTTGGGAATTGGCT+TGG - chr2.4:37446035-37446054 MS.gene68653:CDS 50.0%
GGAATTCGCATACCTCGGTT+GGG - chr2.4:37446090-37446109 MS.gene68653:CDS 50.0%
GTTCCCCGGGTTCCATTAAA+AGG + chr2.4:37445771-37445790 None:intergenic 50.0%
TGGAATTCGCATACCTCGGT+TGG - chr2.4:37446089-37446108 MS.gene68653:CDS 50.0%
! TGGCTTGGGGAATCAAAGAG+GGG - chr2.4:37446050-37446069 MS.gene68653:CDS 50.0%
!! GCTCTTGGACCACTTTTAGC+AGG - chr2.4:37447007-37447026 MS.gene68653:CDS 50.0%
!! TGGCTGGTCATGTTGGTGAT+AGG - chr2.4:37445850-37445869 MS.gene68653:CDS 50.0%
AAAGCAAACGGAGCGACTCC+AGG + chr2.4:37446410-37446429 None:intergenic 55.0%
AAAGCCCTGCGTACCGAGAT+CGG + chr2.4:37446918-37446937 None:intergenic 55.0%
AGGGTTTGCGAGTCCTGGAA+TGG - chr2.4:37446247-37446266 MS.gene68653:intron 55.0%
CCCCGGGTTCCATTAAAAGG+CGG + chr2.4:37445768-37445787 None:intergenic 55.0%
GGTTCTGTTGGAGCTGCTCT+TGG - chr2.4:37446992-37447011 MS.gene68653:CDS 55.0%
! CCGCCTTTTAATGGAACCCG+GGG - chr2.4:37445765-37445784 MS.gene68653:CDS 55.0%
! GCCGCCTTTTAATGGAACCC+GGG - chr2.4:37445764-37445783 MS.gene68653:CDS 55.0%
! GGCCGCCTTTTAATGGAACC+CGG - chr2.4:37445763-37445782 MS.gene68653:CDS 55.0%
! GTACGCAGGGCTTTAGTGGT+GGG - chr2.4:37446924-37446943 MS.gene68653:CDS 55.0%
!! TGGATGGGGTTGGTCGTTTG+TGG - chr2.4:37446154-37446173 MS.gene68653:CDS 55.0%
!!! TCGGGTTGGCCGCCTTTTAA+TGG - chr2.4:37445756-37445775 MS.gene68653:CDS 55.0%
AAGGCGGCCAACCCGAATCA+AGG + chr2.4:37445752-37445771 None:intergenic 60.0%
ACTGCTGTGGCTGCCGATCT+CGG - chr2.4:37446902-37446921 MS.gene68653:CDS 60.0%
AGGCGGCCAACCCGAATCAA+GGG + chr2.4:37445751-37445770 None:intergenic 60.0%
ATGGAACCCGGGGAACTCAC+CGG - chr2.4:37445775-37445794 MS.gene68653:CDS 60.0%
CGAGATCAACCTCGCCAAGC+CGG + chr2.4:37445797-37445816 None:intergenic 60.0%
TGGTGGGAATTCTCGGGCAC+TGG - chr2.4:37446940-37446959 MS.gene68653:CDS 60.0%
TGTTGAAACGGGCGGTGCAG+AGG - chr2.4:37446283-37446302 MS.gene68653:intron 60.0%
! CTCGGTACGCAGGGCTTTAG+TGG - chr2.4:37446920-37446939 MS.gene68653:CDS 60.0%
! GGTACGCAGGGCTTTAGTGG+TGG - chr2.4:37446923-37446942 MS.gene68653:CDS 60.0%
! GGTTGGTCGTTTGTGGTGCC+TGG - chr2.4:37446161-37446180 MS.gene68653:CDS 60.0%
! GTTCTAGGCGGAATCACCGC+CGG - chr2.4:37446707-37446726 MS.gene68653:CDS 60.0%
!! GTGTTGGTTGCAGCGGTTGC+TGG - chr2.4:37446626-37446645 MS.gene68653:CDS 60.0%
!! GTGTTTGGGATGGTGGGCAG+CGG - chr2.4:37445894-37445913 MS.gene68653:CDS 60.0%
GCTGCCGATCTCGGTACGCA+GGG - chr2.4:37446911-37446930 MS.gene68653:CDS 65.0%
CGCCAAGCCGGTGAGTTCCC+CGG + chr2.4:37445785-37445804 None:intergenic 70.0%
GCCAAGCCGGTGAGTTCCCC+GGG + chr2.4:37445784-37445803 None:intergenic 70.0%
GGCTGCCGATCTCGGTACGC+AGG - chr2.4:37446910-37446929 MS.gene68653:CDS 70.0%
! ACCCGGGGAACTCACCGGCT+TGG - chr2.4:37445780-37445799 MS.gene68653:CDS 70.0%
!! GGGAACTCACCGGCTTGGCG+AGG - chr2.4:37445785-37445804 MS.gene68653:CDS 70.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 37445692 37447153 37445692 ID=MS.gene68653
chr2.4 mRNA 37445692 37447153 37445692 ID=MS.gene68653.t1;Parent=MS.gene68653
chr2.4 exon 37446345 37447153 37446345 ID=MS.gene68653.t1.exon1;Parent=MS.gene68653.t1
chr2.4 CDS 37446345 37447153 37446345 ID=cds.MS.gene68653.t1;Parent=MS.gene68653.t1
chr2.4 exon 37445692 37446206 37445692 ID=MS.gene68653.t1.exon2;Parent=MS.gene68653.t1
chr2.4 CDS 37445692 37446206 37445692 ID=cds.MS.gene68653.t1;Parent=MS.gene68653.t1
Gene Sequence

>MS.gene68653

GAAGCCTCCTAGTATTGTTAAAAGTGTTCTGGGACCCACAGTTCCAACCAATTCAACCCTTGATTCGGGTTGGCCGCCTTTTAATGGAACCCGGGGAACTCACCGGCTTGGCGAGGTTGATCTCGCGTTTCTTACTTCTTACTCCATTGGCATGTATTTGGCTGGTCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGTGTTTGGGATGGTGGGCAGCGGTTTTTTTACGATACTTTTTGGGTTAGGATACTGGTTTGATGTTCATGTGTTGGGGTTTTTTGTCGGTGTTCAGATTGTTTGTGGAGTGTTTCAGTCAATTGGGTGGCCTTGTGTTGTTGCAGTTGTTGGGAATTGGCTTGGGGAATCAAAGAGGGGATTGATAATGGGGATATGGAATTCGCATACCTCGGTTGGGAATATCATTGGTTCAGTTATTGCTTCGGGTGTTTTGGAATTTGGATGGGGTTGGTCGTTTGTGGTGCCTGGAATTTTGATCATTTTCATTGGGGTTTTGGTGTTTCTGTTTCTTGTTGTGAATCCCGTGGATATAGGGTTTGCGAGTCCTGGAATGGAAATTGAAATGAGTGTTGAAACGGGCGGTGCAGAGGATCTGCAGAAAGTCGAATCAGAGGAAGCAAAGCTAATTGATCCTGATAGTTCGATTTCAAATTCTTCGTCTGCTATTGGATTTTTAGAGGCGTGGAAAATACCTGGAGTCGCTCCGTTTGCTTTTTGTCTCTTTTTCTCAAAATTTGTTGCTTACACTTTCTTGTATTGGTTACCCTTCTACATAAGGCACACAGGTAATTGTTCTTTGATGCAAAAATATATCATATCTGATAGATTTATTGCATTGATTAAGCCATATCTTATTTAGTTTACATAATTTTCATGAATTATGATTTTTTTTTATTGAATTTGTTATTTTGTGTTGGTTGCAGCGGTTGCTGGTGTGAATCTATCTCACAAAACTGCTGGGTTACTTTCAACAATATTTGATATTGGAGGAGTTCTAGGCGGAATCACCGCCGGTTTCATTTCTGATATGATTGAAGCTCGCGCTGTGACTTCAATCCTGTTCTTGTTTCTATCGATTCCAGCTCTGCTTTTGTATCGTGCTTTCGGGAGCATCTCTATGTTTACTAACATCACCTTGATGTTTCTTTCTGGATTTTTGGTGAATGGTCCGTACTCGCTAATTACAACTGCTGTGGCTGCCGATCTCGGTACGCAGGGCTTTAGTGGTGGGAATTCTCGGGCACTGGCTACTGTTACTGCAATCATTGATGGTACTGGTTCTGTTGGAGCTGCTCTTGGACCACTTTTAGCAGGTTATGTTTCAACTAAGGGATGGAACAGTGTATTTTTTATGCTCGTTTCGTCTATTTTCTTTGCTGGTTTATTCTTGATTCGAGTTGCAAGGACTGAGATAAGAGAGAAGTTTTCAGGAAAGTGA

Protein sequence

>MS.gene68653.t1

EASUYCUKCSGTHSSNQFNPUFGLAAFUWNPGNSPAWRGUSRVSYFLLHWHVFGWSCWUUDUFEVVSCVWDGGQRFFYDTFWVRILVUCSCVGVFCRCSDCLWSVSVNWVALCCCSCWELAWGIKEGIDNGDMEFAYLGWEYHWFSYCFGCFGIWMGLVVCGAWNFDHFHWGFGVSVSCCESRGYRVCESWNGNUNECUNGRCRGSAESRIRGSKANUSUUFDFKFFVCYWIFRGVENTWSRSVCFLSLFLKICCLHFLVLVTLLHKAHSGCWCESISQNCWVTFNNIUYWRSSRRNHRRFHFUYDUSSRCDFNPVLVSIDSSSAFVSCFREHLYVYUHHLDVSFWIFGEWSVLANYNCCGCRSRYAGLUWWEFSGTGYCYCNHUWYWFCWSCSWTTFSRLCFNUGMEQCIFYARFVYFLCWFILDSSCKDUDKREVFRKV