AlfalfaGEDB | MS.gene68653

M. sativa cultivar XinJiangDaYe / MS.gene68653

KEGG: -
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005887 GO:0006810 GO:0008150 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68653.t1	XP_013464044.1	97.3	440	12	0	1	440	50	489	7.00E-236	826.2

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68653.t1	Q9SL56	72.6	442	116	2	1	440	48	486	1.1e-181	637.5

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene68653.t1	A0A072V7P9	97.3	440	12	0	1	440	50	489	5.0e-236	826.2

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene04918	MS.gene68653	0.84129	5.20E-58	-1.69E-46
MS.gene04919	MS.gene68653	0.84021	9.97E-58	-1.69E-46
MS.gene04920	MS.gene68653	0.864867	8.93E-65	-1.69E-46
MS.gene049254	MS.gene68653	0.824885	6.33E-54	-1.69E-46
MS.gene049283	MS.gene68653	0.878308	3.12E-69	-1.69E-46
MS.gene049499	MS.gene68653	0.847822	9.07E-60	-1.69E-46
MS.gene049983	MS.gene68653	0.852303	5.04E-61	-1.69E-46
MS.gene050414	MS.gene68653	0.832762	7.86E-56	-1.69E-46
MS.gene050654	MS.gene68653	0.810551	1.09E-50	-1.69E-46
MS.gene050945	MS.gene68653	0.836037	1.18E-56	-1.69E-46

Showing 1 to 10 of 77 entries

Previous1 2 3 4 5…8Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Find 121 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCAAACGGAGCGACTCC+AGG	0.556148	2.4:+37446416	None:intergenic
AAAGCCCTGCGTACCGAGAT+CGG	0.516139	2.4:+37445908	None:intergenic
AAATCCAGAAAGAAACATCA+AGG	0.579928	2.4:+37445974	None:intergenic
AACCAATTCAACCCTTGATT+CGG	0.343395	2.4:-37447086	MS.gene68653:CDS
AAGGCGGCCAACCCGAATCA+AGG	0.499130	2.4:+37447074	None:intergenic
AATCATATCAGAAATGAAAC+CGG	0.508019	2.4:+37446097	None:intergenic
AATCTATCTCACAAAACTGC+TGG	0.446010	2.4:-37446170	MS.gene68653:CDS
AATTGAAATGAGTGTTGAAA+CGG	0.556957	2.4:-37446552	MS.gene68653:CDS
ACCAATGATATTCCCAACCG+AGG	0.679777	2.4:+37446721	None:intergenic
ACCAATTCAACCCTTGATTC+GGG	0.365317	2.4:-37447085	MS.gene68653:CDS

Showing 1 to 10 of 121 entries

Previous1 2 3 4 5…13Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATCCAGAAAGAAACATCA+AGG	+	chr2.4:37446852-37446871	None:intergenic	30.0%
TTGCTTACACTTTCTTGTAT+TGG	-	chr2.4:37446453-37446472	MS.gene68653:CDS	30.0%
TTTCTTACTTCTTACTCCAT+TGG	-	chr2.4:37445819-37445838	MS.gene68653:CDS	30.0%
AACCAATTCAACCCTTGATT+CGG	-	chr2.4:37445737-37445756	MS.gene68653:CDS	35.0%
AATCTATCTCACAAAACTGC+TGG	-	chr2.4:37446653-37446672	MS.gene68653:CDS	35.0%
ACTGTTACTGCAATCATTGA+TGG	-	chr2.4:37446965-37446984	MS.gene68653:CDS	35.0%
AGCAGGTTATGTTTCAACTA+AGG	-	chr2.4:37447024-37447043	MS.gene68653:CDS	35.0%
ATCAAAGAGGGGATTGATAA+TGG	-	chr2.4:37446061-37446080	MS.gene68653:CDS	35.0%
ATCACCTTGATGTTTCTTTC+TGG	-	chr2.4:37446845-37446864	MS.gene68653:CDS	35.0%
ATCTATCTCACAAAACTGCT+GGG	-	chr2.4:37446654-37446673	MS.gene68653:CDS	35.0%

Showing 1 to 10 of 154 entries

Previous1 2 3 4 5…16Next

Chromosome	Type	Strat	End	Strand	Name
chr2.4	gene	37445692	37447153	37445692	ID=MS.gene68653
chr2.4	mRNA	37445692	37447153	37445692	ID=MS.gene68653.t1;Parent=MS.gene68653
chr2.4	exon	37446345	37447153	37446345	ID=MS.gene68653.t1.exon1;Parent=MS.gene68653.t1
chr2.4	CDS	37446345	37447153	37446345	ID=cds.MS.gene68653.t1;Parent=MS.gene68653.t1
chr2.4	exon	37445692	37446206	37445692	ID=MS.gene68653.t1.exon2;Parent=MS.gene68653.t1
chr2.4	CDS	37445692	37446206	37445692	ID=cds.MS.gene68653.t1;Parent=MS.gene68653.t1

Gene Sequence

>MS.gene68653

GAAGCCTCCTAGTATTGTTAAAAGTGTTCTGGGACCCACAGTTCCAACCAATTCAACCCTTGATTCGGGTTGGCCGCCTTTTAATGGAACCCGGGGAACTCACCGGCTTGGCGAGGTTGATCTCGCGTTTCTTACTTCTTACTCCATTGGCATGTATTTGGCTGGTCATGTTGGTGATAGGATTGATTTGAGGTTGTTTCTTGTGTTTGGGATGGTGGGCAGCGGTTTTTTTACGATACTTTTTGGGTTAGGATACTGGTTTGATGTTCATGTGTTGGGGTTTTTTGTCGGTGTTCAGATTGTTTGTGGAGTGTTTCAGTCAATTGGGTGGCCTTGTGTTGTTGCAGTTGTTGGGAATTGGCTTGGGGAATCAAAGAGGGGATTGATAATGGGGATATGGAATTCGCATACCTCGGTTGGGAATATCATTGGTTCAGTTATTGCTTCGGGTGTTTTGGAATTTGGATGGGGTTGGTCGTTTGTGGTGCCTGGAATTTTGATCATTTTCATTGGGGTTTTGGTGTTTCTGTTTCTTGTTGTGAATCCCGTGGATATAGGGTTTGCGAGTCCTGGAATGGAAATTGAAATGAGTGTTGAAACGGGCGGTGCAGAGGATCTGCAGAAAGTCGAATCAGAGGAAGCAAAGCTAATTGATCCTGATAGTTCGATTTCAAATTCTTCGTCTGCTATTGGATTTTTAGAGGCGTGGAAAATACCTGGAGTCGCTCCGTTTGCTTTTTGTCTCTTTTTCTCAAAATTTGTTGCTTACACTTTCTTGTATTGGTTACCCTTCTACATAAGGCACACAGGTAATTGTTCTTTGATGCAAAAATATATCATATCTGATAGATTTATTGCATTGATTAAGCCATATCTTATTTAGTTTACATAATTTTCATGAATTATGATTTTTTTTTATTGAATTTGTTATTTTGTGTTGGTTGCAGCGGTTGCTGGTGTGAATCTATCTCACAAAACTGCTGGGTTACTTTCAACAATATTTGATATTGGAGGAGTTCTAGGCGGAATCACCGCCGGTTTCATTTCTGATATGATTGAAGCTCGCGCTGTGACTTCAATCCTGTTCTTGTTTCTATCGATTCCAGCTCTGCTTTTGTATCGTGCTTTCGGGAGCATCTCTATGTTTACTAACATCACCTTGATGTTTCTTTCTGGATTTTTGGTGAATGGTCCGTACTCGCTAATTACAACTGCTGTGGCTGCCGATCTCGGTACGCAGGGCTTTAGTGGTGGGAATTCTCGGGCACTGGCTACTGTTACTGCAATCATTGATGGTACTGGTTCTGTTGGAGCTGCTCTTGGACCACTTTTAGCAGGTTATGTTTCAACTAAGGGATGGAACAGTGTATTTTTTATGCTCGTTTCGTCTATTTTCTTTGCTGGTTTATTCTTGATTCGAGTTGCAAGGACTGAGATAAGAGAGAAGTTTTCAGGAAAGTGA

Protein sequence

>MS.gene68653.t1

EASUYCUKCSGTHSSNQFNPUFGLAAFUWNPGNSPAWRGUSRVSYFLLHWHVFGWSCWUUDUFEVVSCVWDGGQRFFYDTFWVRILVUCSCVGVFCRCSDCLWSVSVNWVALCCCSCWELAWGIKEGIDNGDMEFAYLGWEYHWFSYCFGCFGIWMGLVVCGAWNFDHFHWGFGVSVSCCESRGYRVCESWNGNUNECUNGRCRGSAESRIRGSKANUSUUFDFKFFVCYWIFRGVENTWSRSVCFLSLFLKICCLHFLVLVTLLHKAHSGCWCESISQNCWVTFNNIUYWRSSRRNHRRFHFUYDUSSRCDFNPVLVSIDSSSAFVSCFREHLYVYUHHLDVSFWIFGEWSVLANYNCCGCRSRYAGLUWWEFSGTGYCYCNHUWYWFCWSCSWTTFSRLCFNUGMEQCIFYARFVYFLCWFILDSSCKDUDKREVFRKV