Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73303.t1 | XP_013454888.1 | 89.9 | 198 | 16 | 1 | 1 | 198 | 1 | 194 | 1.40E-71 | 279.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73303.t1 | Q8LDV3 | 73.0 | 37 | 10 | 0 | 69 | 105 | 65 | 101 | 4.3e-08 | 59.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73303.t1 | A0A072UHP4 | 89.9 | 198 | 16 | 1 | 1 | 198 | 1 | 194 | 1.0e-71 | 279.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene73303 | 0.832419 | 9.55E-56 | -1.69E-46 |
| MS.gene049222 | MS.gene73303 | 0.826773 | 2.26E-54 | -1.69E-46 |
| MS.gene049285 | MS.gene73303 | 0.829884 | 4.01E-55 | -1.69E-46 |
| MS.gene049320 | MS.gene73303 | 0.844722 | 6.34E-59 | -1.69E-46 |
| MS.gene04938 | MS.gene73303 | 0.80006 | 1.72E-48 | -1.69E-46 |
| MS.gene04939 | MS.gene73303 | 0.828046 | 1.12E-54 | -1.69E-46 |
| MS.gene049633 | MS.gene73303 | 0.827425 | 1.58E-54 | -1.69E-46 |
| MS.gene050163 | MS.gene73303 | 0.831009 | 2.13E-55 | -1.69E-46 |
| MS.gene050165 | MS.gene73303 | 0.824957 | 6.09E-54 | -1.69E-46 |
| MS.gene050170 | MS.gene73303 | 0.81583 | 7.56E-52 | -1.69E-46 |
| MS.gene050323 | MS.gene73303 | 0.803467 | 3.44E-49 | -1.69E-46 |
| MS.gene050333 | MS.gene73303 | 0.809697 | 1.66E-50 | -1.69E-46 |
| MS.gene050496 | MS.gene73303 | 0.802732 | 4.88E-49 | -1.69E-46 |
| MS.gene050504 | MS.gene73303 | 0.84439 | 7.79E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene73303 | 0.838342 | 3.04E-57 | -1.69E-46 |
| MS.gene050577 | MS.gene73303 | 0.866077 | 3.71E-65 | -1.69E-46 |
| MS.gene050612 | MS.gene73303 | 0.850923 | 1.24E-60 | -1.69E-46 |
| MS.gene050675 | MS.gene73303 | 0.822869 | 1.88E-53 | -1.69E-46 |
| MS.gene050699 | MS.gene73303 | 0.867819 | 1.03E-65 | -1.69E-46 |
| MS.gene050747 | MS.gene73303 | 0.837628 | 4.65E-57 | -1.69E-46 |
| MS.gene050772 | MS.gene73303 | 0.814713 | 1.34E-51 | -1.69E-46 |
| MS.gene05080 | MS.gene73303 | 0.809812 | 1.57E-50 | -1.69E-46 |
| MS.gene050876 | MS.gene73303 | 0.814948 | 1.19E-51 | -1.69E-46 |
| MS.gene050904 | MS.gene73303 | 0.818044 | 2.41E-52 | -1.69E-46 |
| MS.gene050950 | MS.gene73303 | 0.835772 | 1.38E-56 | -1.69E-46 |
| MS.gene050986 | MS.gene73303 | 0.847437 | 1.16E-59 | -1.69E-46 |
| MS.gene05100 | MS.gene73303 | 0.804296 | 2.31E-49 | -1.69E-46 |
| MS.gene051317 | MS.gene73303 | 0.836477 | 9.15E-57 | -1.69E-46 |
| MS.gene052164 | MS.gene73303 | 0.818094 | 2.34E-52 | -1.69E-46 |
| MS.gene052482 | MS.gene73303 | 0.807176 | 5.74E-50 | -1.69E-46 |
| MS.gene052486 | MS.gene73303 | 0.828466 | 8.85E-55 | -1.69E-46 |
| MS.gene052503 | MS.gene73303 | 0.824288 | 8.75E-54 | -1.69E-46 |
| MS.gene052615 | MS.gene73303 | 0.841021 | 6.12E-58 | -1.69E-46 |
| MS.gene052823 | MS.gene73303 | 0.8189 | 1.54E-52 | -1.69E-46 |
| MS.gene052825 | MS.gene73303 | 0.816945 | 4.26E-52 | -1.69E-46 |
| MS.gene052966 | MS.gene73303 | 0.800259 | 1.57E-48 | -1.69E-46 |
| MS.gene053203 | MS.gene73303 | 0.815059 | 1.12E-51 | -1.69E-46 |
| MS.gene053213 | MS.gene73303 | 0.83372 | 4.54E-56 | -1.69E-46 |
| MS.gene053286 | MS.gene73303 | 0.834785 | 2.45E-56 | -1.69E-46 |
| MS.gene053436 | MS.gene73303 | 0.807488 | 4.93E-50 | -1.69E-46 |
| MS.gene053480 | MS.gene73303 | 0.827914 | 1.20E-54 | -1.69E-46 |
| MS.gene053574 | MS.gene73303 | 0.811688 | 6.18E-51 | -1.69E-46 |
| MS.gene053632 | MS.gene73303 | 0.811769 | 5.93E-51 | -1.69E-46 |
| MS.gene054408 | MS.gene73303 | 0.830176 | 3.40E-55 | -1.69E-46 |
| MS.gene054600 | MS.gene73303 | 0.829512 | 4.94E-55 | -1.69E-46 |
| MS.gene054642 | MS.gene73303 | 0.809482 | 1.85E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene73303 | 0.844869 | 5.79E-59 | -1.69E-46 |
| MS.gene054954 | MS.gene73303 | 0.83144 | 1.67E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene73303 | 0.843072 | 1.75E-58 | -1.69E-46 |
| MS.gene055502 | MS.gene73303 | 0.84443 | 7.60E-59 | -1.69E-46 |
| MS.gene055577 | MS.gene73303 | 0.81631 | 5.91E-52 | -1.69E-46 |
| MS.gene055748 | MS.gene73303 | 0.833734 | 4.50E-56 | -1.69E-46 |
| MS.gene055750 | MS.gene73303 | 0.836842 | 7.38E-57 | -1.69E-46 |
| MS.gene055751 | MS.gene73303 | 0.83122 | 1.89E-55 | -1.69E-46 |
| MS.gene05589 | MS.gene73303 | 0.846259 | 2.43E-59 | -1.69E-46 |
| MS.gene056504 | MS.gene73303 | 0.834573 | 2.77E-56 | -1.69E-46 |
| MS.gene056510 | MS.gene73303 | 0.835417 | 1.70E-56 | -1.69E-46 |
| MS.gene056657 | MS.gene73303 | 0.843312 | 1.51E-58 | -1.69E-46 |
| MS.gene056692 | MS.gene73303 | 0.8373 | 5.64E-57 | -1.69E-46 |
| MS.gene057831 | MS.gene73303 | 0.859296 | 4.56E-63 | -1.69E-46 |
| MS.gene05787 | MS.gene73303 | 0.800277 | 1.55E-48 | -1.69E-46 |
| MS.gene05837 | MS.gene73303 | 0.832865 | 7.41E-56 | -1.69E-46 |
| MS.gene058419 | MS.gene73303 | 0.83978 | 1.29E-57 | -1.69E-46 |
| MS.gene058544 | MS.gene73303 | 0.836016 | 1.20E-56 | -1.69E-46 |
| MS.gene058719 | MS.gene73303 | 0.807989 | 3.86E-50 | -1.69E-46 |
| MS.gene058773 | MS.gene73303 | 0.803123 | 4.05E-49 | -1.69E-46 |
| MS.gene058838 | MS.gene73303 | 0.817094 | 3.94E-52 | -1.69E-46 |
| MS.gene059022 | MS.gene73303 | 0.836413 | 9.50E-57 | -1.69E-46 |
| MS.gene059023 | MS.gene73303 | 0.831444 | 1.66E-55 | -1.69E-46 |
| MS.gene059677 | MS.gene73303 | 0.846446 | 2.16E-59 | -1.69E-46 |
| MS.gene059718 | MS.gene73303 | 0.838732 | 2.41E-57 | -1.69E-46 |
| MS.gene059756 | MS.gene73303 | 0.821656 | 3.60E-53 | -1.69E-46 |
| MS.gene059865 | MS.gene73303 | 0.824178 | 9.29E-54 | -1.69E-46 |
| MS.gene06000 | MS.gene73303 | 0.811788 | 5.88E-51 | -1.69E-46 |
| MS.gene060703 | MS.gene73303 | 0.836313 | 1.01E-56 | -1.69E-46 |
| MS.gene060762 | MS.gene73303 | 0.818068 | 2.38E-52 | -1.69E-46 |
| MS.gene060778 | MS.gene73303 | 0.805417 | 1.35E-49 | -1.69E-46 |
| MS.gene06077 | MS.gene73303 | 0.86245 | 5.03E-64 | -1.69E-46 |
| MS.gene06092 | MS.gene73303 | 0.809675 | 1.68E-50 | -1.69E-46 |
| MS.gene060982 | MS.gene73303 | 0.859656 | 3.56E-63 | -1.69E-46 |
| MS.gene061150 | MS.gene73303 | 0.818176 | 2.25E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73303.t1 | MTR_4g017880 | 91.919 | 198 | 12 | 1 | 1 | 198 | 1 | 194 | 2.42e-116 | 328 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene73303.t1 | AT4G13200 | 73.750 | 80 | 19 | 1 | 69 | 148 | 65 | 142 | 7.72e-35 | 122 |
Find 47 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTTCCAGCTGCAATAAA+AGG | 0.243044 | 4.1:+79733751 | MS.gene73303:CDS |
| GAGGATGTTGGAAAAGGTTT+TGG | 0.267900 | 4.1:-79733697 | None:intergenic |
| AAAACAAGTACAGGAATTTC+AGG | 0.306473 | 4.1:+79734931 | MS.gene73303:CDS |
| AGTGGGCTCAATGTATGTTT+CGG | 0.401799 | 4.1:-79735977 | None:intergenic |
| GTAGACTGTACTGAAATAAC+TGG | 0.424997 | 4.1:-79735946 | None:intergenic |
| GAAGCGAAGGTTGTTGGAGA+TGG | 0.430525 | 4.1:-79733663 | None:intergenic |
| AGATGGTGAAGGGGAGAGAC+TGG | 0.433088 | 4.1:-79733646 | None:intergenic |
| CTAGGAGAAGCGAAGGTTGT+TGG | 0.443557 | 4.1:-79733669 | None:intergenic |
| GTCGTGGATACATCTACTTC+AGG | 0.461935 | 4.1:+79735901 | MS.gene73303:CDS |
| GCTGGAAAGTTGAATGCATA+TGG | 0.471661 | 4.1:-79733739 | None:intergenic |
| AGAAGAAGGAACGAGGATGT+TGG | 0.477615 | 4.1:-79733709 | None:intergenic |
| CAACAACCTTCGCTTCTCCT+AGG | 0.487374 | 4.1:+79733670 | MS.gene73303:CDS |
| AATCACTTATGAACTTAATG+TGG | 0.492042 | 4.1:-79736013 | None:intergenic |
| AGCTACAGAGGCACAACCAC+AGG | 0.496781 | 4.1:+79735843 | MS.gene73303:CDS |
| AAGTTGAATGCATATGGGTT+TGG | 0.500968 | 4.1:-79733733 | None:intergenic |
| AGGAACGAGGATGTTGGAAA+AGG | 0.507028 | 4.1:-79733703 | None:intergenic |
| ACAATACCTTCTTCCCTGGT+GGG | 0.513213 | 4.1:+79733802 | MS.gene73303:CDS |
| AACAATACCTTCTTCCCTGG+TGG | 0.526584 | 4.1:+79733801 | MS.gene73303:CDS |
| ATCACTTATGAACTTAATGT+GGG | 0.529065 | 4.1:-79736012 | None:intergenic |
| CTGGAAAGTTGAATGCATAT+GGG | 0.538772 | 4.1:-79733738 | None:intergenic |
| AAGGTTGTTGGAGATGGTGA+AGG | 0.541919 | 4.1:-79733657 | None:intergenic |
| GGTGAGCTCTTGAGTACAGT+TGG | 0.546113 | 4.1:+79734887 | MS.gene73303:CDS |
| ACAAAATAGTTTACCAGAGG+GGG | 0.548400 | 4.1:-79733826 | None:intergenic |
| GAGCGCATTGAGTCGACACT+TGG | 0.551517 | 4.1:+79734866 | MS.gene73303:CDS |
| GTGGGATCCTCCCCTTCAGT+GGG | 0.555642 | 4.1:-79735994 | None:intergenic |
| AGGTTGTTGGAGATGGTGAA+GGG | 0.556621 | 4.1:-79733656 | None:intergenic |
| TCTTATATAGGAAGAAGTGT+TGG | 0.559399 | 4.1:+79735783 | MS.gene73303:intron |
| TGTGGGATCCTCCCCTTCAG+TGG | 0.562869 | 4.1:-79735995 | None:intergenic |
| AGAGGCACAACCACAGGGAC+TGG | 0.571099 | 4.1:+79735849 | MS.gene73303:CDS |
| TGTAACAATACCTTCTTCCC+TGG | 0.577863 | 4.1:+79733798 | MS.gene73303:CDS |
| CATTGAGCCCACTGAAGGGG+AGG | 0.585167 | 4.1:+79735987 | MS.gene73303:CDS |
| AACAAAATAGTTTACCAGAG+GGG | 0.587709 | 4.1:-79733827 | None:intergenic |
| ACATACATTGAGCCCACTGA+AGG | 0.589905 | 4.1:+79735982 | MS.gene73303:CDS |
| CATATGGGTTTGGAAGAAGA+AGG | 0.597786 | 4.1:-79733723 | None:intergenic |
| GGTTGTTGGAGATGGTGAAG+GGG | 0.598990 | 4.1:-79733655 | None:intergenic |
| CTGTACTGAAATAACTGGAT+CGG | 0.599093 | 4.1:-79735941 | None:intergenic |
| TTCTGTATAAGCTGTAGACT+CGG | 0.604698 | 4.1:-79735875 | None:intergenic |
| GGAGAACCTAGGAGAAGCGA+AGG | 0.618276 | 4.1:-79733676 | None:intergenic |
| ATACATTGAGCCCACTGAAG+GGG | 0.633289 | 4.1:+79735984 | MS.gene73303:CDS |
| CATACATTGAGCCCACTGAA+GGG | 0.638017 | 4.1:+79735983 | MS.gene73303:CDS |
| AGCTTATACAGAAGTCGTCG+TGG | 0.643619 | 4.1:+79735885 | MS.gene73303:CDS |
| GACTCGGAAACCAGTCCCTG+TGG | 0.653112 | 4.1:-79735859 | None:intergenic |
| AGCAGCGCGTGAAGCTACAG+AGG | 0.653253 | 4.1:+79735831 | MS.gene73303:CDS |
| ATTGTTACAGCGAAGTCCAG+TGG | 0.665812 | 4.1:-79733784 | None:intergenic |
| GTTTGGAAGAAGAAGGAACG+AGG | 0.668466 | 4.1:-79733716 | None:intergenic |
| GCTACAGAGGCACAACCACA+GGG | 0.669289 | 4.1:+79735844 | MS.gene73303:CDS |
| CAAAATAGTTTACCAGAGGG+GGG | 0.676627 | 4.1:-79733825 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CGAAATTATAATTCTTATAT+AGG | + | chr4.1:79735771-79735790 | MS.gene73303:intron | 15.0% |
| !!! | AGGATATATAGTTTTTTTAA+AGG | - | chr4.1:79734714-79734733 | None:intergenic | 15.0% |
| !!! | GGATATATAGTTTTTTTAAA+GGG | - | chr4.1:79734713-79734732 | None:intergenic | 15.0% |
| !! | AGTAAACAACAATATTGTTT+AGG | - | chr4.1:79735062-79735081 | None:intergenic | 20.0% |
| !! | TAAATTATGTACCATTAGAT+TGG | - | chr4.1:79735698-79735717 | None:intergenic | 20.0% |
| !! | TGTTTACTAACTATATTCAT+TGG | + | chr4.1:79735074-79735093 | MS.gene73303:intron | 20.0% |
| !! | TTTAATGTAATCATATGTGA+CGG | + | chr4.1:79734204-79734223 | MS.gene73303:intron | 20.0% |
| !!! | AAAATGTTGTTACTTGTATT+GGG | + | chr4.1:79735359-79735378 | MS.gene73303:intron | 20.0% |
| !!! | ATTTATTTCTTTGATAACCA+AGG | + | chr4.1:79734455-79734474 | MS.gene73303:intron | 20.0% |
| !!! | CAGTTTTAATCTTAATCAAA+AGG | - | chr4.1:79734427-79734446 | None:intergenic | 20.0% |
| !!! | GAAAAAAAAGTTCCAAATTT+TGG | + | chr4.1:79735401-79735420 | MS.gene73303:intron | 20.0% |
| !!! | TATCCTTAGATTTTTGTATT+AGG | + | chr4.1:79734728-79734747 | MS.gene73303:intron | 20.0% |
| !!! | TTTTGCTTTACTTTAAAGTT+TGG | + | chr4.1:79734070-79734089 | MS.gene73303:intron | 20.0% |
| ! | AAACAAAATAGTTTACCAGA+GGG | - | chr4.1:79733831-79733850 | None:intergenic | 25.0% |
| ! | ATACTAATAATAGCTGGTAT+AGG | + | chr4.1:79735307-79735326 | MS.gene73303:intron | 25.0% |
| ! | ATCAGTTATGTATTCCAAAA+TGG | + | chr4.1:79735456-79735475 | MS.gene73303:intron | 25.0% |
| ! | ATTGAATTCAGGAAACTTAT+TGG | + | chr4.1:79734010-79734029 | MS.gene73303:intron | 25.0% |
| ! | CATGTATGTAATTACAAGTT+TGG | - | chr4.1:79734655-79734674 | None:intergenic | 25.0% |
| ! | CTCAAAAGGTTATATAAAGA+TGG | + | chr4.1:79734348-79734367 | MS.gene73303:intron | 25.0% |
| ! | GTACCTAATACAAAAATCTA+AGG | - | chr4.1:79734734-79734753 | None:intergenic | 25.0% |
| ! | TAGGATGAATAATTGAATTC+AGG | + | chr4.1:79733999-79734018 | MS.gene73303:intron | 25.0% |
| ! | TCTTCATAACTACCAAAATT+TGG | - | chr4.1:79735416-79735435 | None:intergenic | 25.0% |
| ! | TGAAACTGTAGTTTATAGTT+GGG | + | chr4.1:79735252-79735271 | MS.gene73303:intron | 25.0% |
| ! | TTCAATCTGTTATCTCATAT+AGG | + | chr4.1:79735020-79735039 | MS.gene73303:intron | 25.0% |
| ! | TTGAAACTGTAGTTTATAGT+TGG | + | chr4.1:79735251-79735270 | MS.gene73303:intron | 25.0% |
| ! | TTGAATTCAGGAAACTTATT+GGG | + | chr4.1:79734011-79734030 | MS.gene73303:intron | 25.0% |
| ! | TTGCTGCAAAACATATTATT+GGG | + | chr4.1:79735518-79735537 | MS.gene73303:intron | 25.0% |
| ! | TTTGCTGCAAAACATATTAT+TGG | + | chr4.1:79735517-79735536 | MS.gene73303:intron | 25.0% |
| !! | AAATGTTGTTACTTGTATTG+GGG | + | chr4.1:79735360-79735379 | MS.gene73303:intron | 25.0% |
| !! | AATTTAAAATGACCGCTTAT+GGG | + | chr4.1:79735712-79735731 | MS.gene73303:intron | 25.0% |
| !! | ATTGACTCAGAAATTCAAAT+TGG | - | chr4.1:79735496-79735515 | None:intergenic | 25.0% |
| !! | GAAAATGTTGTTACTTGTAT+TGG | + | chr4.1:79735358-79735377 | MS.gene73303:intron | 25.0% |
| !! | TAATTTAAAATGACCGCTTA+TGG | + | chr4.1:79735711-79735730 | MS.gene73303:intron | 25.0% |
| !! | TATCAGTCATCACTAAATTT+TGG | - | chr4.1:79734608-79734627 | None:intergenic | 25.0% |
| !!! | CTAAATTTTGGAAAAACCAA+TGG | - | chr4.1:79734596-79734615 | None:intergenic | 25.0% |
| !!! | CTTTAAAGTTTGGTTTTTTC+CGG | + | chr4.1:79734080-79734099 | MS.gene73303:intron | 25.0% |
| !!! | TACTTTTCATTTAGCTCAAA+AGG | + | chr4.1:79734334-79734353 | MS.gene73303:intron | 25.0% |
| AAAACAAGTACAGGAATTTC+AGG | + | chr4.1:79734931-79734950 | MS.gene73303:CDS | 30.0% | |
| AACAAAATAGTTTACCAGAG+GGG | - | chr4.1:79733830-79733849 | None:intergenic | 30.0% | |
| AGATTCATAATGATTGAGAG+AGG | + | chr4.1:79734288-79734307 | MS.gene73303:intron | 30.0% | |
| ATGTTACAATAATGCTACCT+TGG | - | chr4.1:79734475-79734494 | None:intergenic | 30.0% | |
| CATCAAAATCAACAAGAGAA+AGG | - | chr4.1:79733854-79733873 | None:intergenic | 30.0% | |
| CATGATTCATGCATATCAAA+TGG | + | chr4.1:79735567-79735586 | MS.gene73303:intron | 30.0% | |
| CTCAGAAATTCAAATTGGAT+TGG | - | chr4.1:79735491-79735510 | None:intergenic | 30.0% | |
| CTCTCAATCATTATGAATCT+AGG | - | chr4.1:79734288-79734307 | None:intergenic | 30.0% | |
| GAAACAAAATAGTTTACCAG+AGG | - | chr4.1:79733832-79733851 | None:intergenic | 30.0% | |
| GCAAAACAAATCCTTAAGAA+TGG | - | chr4.1:79734633-79734652 | None:intergenic | 30.0% | |
| GTATTCCAAAATGGTACATT+TGG | + | chr4.1:79735465-79735484 | MS.gene73303:intron | 30.0% | |
| TCGTAAATATGTGGTTTACA+CGG | + | chr4.1:79734676-79734695 | MS.gene73303:intron | 30.0% | |
| TGAACAACAAAAACAAGTAC+AGG | + | chr4.1:79734922-79734941 | MS.gene73303:CDS | 30.0% | |
| TGACTGATAATCCATTCTTA+AGG | + | chr4.1:79734619-79734638 | MS.gene73303:intron | 30.0% | |
| TTGAAGTATGTGAATCATGT+AGG | + | chr4.1:79734770-79734789 | MS.gene73303:intron | 30.0% | |
| ! | AATGTTGTTACTTGTATTGG+GGG | + | chr4.1:79735361-79735380 | MS.gene73303:intron | 30.0% |
| ! | AGGTAAGGAACATTTTCAAT+TGG | + | chr4.1:79734951-79734970 | MS.gene73303:intron | 30.0% |
| ! | TCTTATATAGGAAGAAGTGT+TGG | + | chr4.1:79735783-79735802 | MS.gene73303:intron | 30.0% |
| ! | TGGGCCATAAAAGTATATAT+CGG | + | chr4.1:79735537-79735556 | MS.gene73303:intron | 30.0% |
| !! | TGCACCGATATATACTTTTA+TGG | - | chr4.1:79735544-79735563 | None:intergenic | 30.0% |
| !!! | TGCTTTTTCCTTTGCTTTTT+TGG | - | chr4.1:79735815-79735834 | None:intergenic | 30.0% |
| AACTTTCCAGCTGCAATAAA+AGG | + | chr4.1:79733751-79733770 | MS.gene73303:CDS | 35.0% | |
| AAGTTGAATGCATATGGGTT+TGG | - | chr4.1:79733736-79733755 | None:intergenic | 35.0% | |
| ACAAAATAGTTTACCAGAGG+GGG | - | chr4.1:79733829-79733848 | None:intergenic | 35.0% | |
| ATCTAACATAGTCCCATAAG+CGG | - | chr4.1:79735727-79735746 | None:intergenic | 35.0% | |
| ATTGTGTTGTGCTGGATTTA+TGG | + | chr4.1:79734975-79734994 | MS.gene73303:intron | 35.0% | |
| CATACATGCTCGTAAATATG+TGG | + | chr4.1:79734667-79734686 | MS.gene73303:intron | 35.0% | |
| CTGGAAAGTTGAATGCATAT+GGG | - | chr4.1:79733741-79733760 | None:intergenic | 35.0% | |
| CTGTACTGAAATAACTGGAT+CGG | - | chr4.1:79735944-79735963 | None:intergenic | 35.0% | |
| GACACAAAAATGACACTTGT+CGG | - | chr4.1:79735639-79735658 | None:intergenic | 35.0% | |
| GGAGAATATTCTAACAGACT+TGG | + | chr4.1:79734369-79734388 | MS.gene73303:intron | 35.0% | |
| GTAGACTGTACTGAAATAAC+TGG | - | chr4.1:79735949-79735968 | None:intergenic | 35.0% | |
| GTGTCTGTATACCAATCTAA+TGG | + | chr4.1:79735684-79735703 | MS.gene73303:intron | 35.0% | |
| GTTGGACGTTAATGTTCAAT+CGG | + | chr4.1:79735282-79735301 | MS.gene73303:intron | 35.0% | |
| GTTTAAAAACCAGACTGAAC+TGG | - | chr4.1:79734574-79734593 | None:intergenic | 35.0% | |
| TACAAACTATCGTCAAGTAG+AGG | + | chr4.1:79735140-79735159 | MS.gene73303:intron | 35.0% | |
| TAGTTTATAGTTGGGCACTT+GGG | + | chr4.1:79735260-79735279 | MS.gene73303:intron | 35.0% | |
| TCGGCTATACTAATAATAGC+TGG | + | chr4.1:79735301-79735320 | MS.gene73303:intron | 35.0% | |
| TTCTGTATAAGCTGTAGACT+CGG | - | chr4.1:79735878-79735897 | None:intergenic | 35.0% | |
| ! | AAAACTCCTTTTATTGCAGC+TGG | - | chr4.1:79733760-79733779 | None:intergenic | 35.0% |
| ! | AAGTACAGGAATTTCAGGTA+AGG | + | chr4.1:79734936-79734955 | MS.gene73303:intron | 35.0% |
| ! | ATCTCATATAGGTTTGCTTC+AGG | + | chr4.1:79735031-79735050 | MS.gene73303:intron | 35.0% |
| ! | ATGTTGTTACTTGTATTGGG+GGG | + | chr4.1:79735362-79735381 | MS.gene73303:intron | 35.0% |
| ! | ATTGGCCAAATGTACCATTT+TGG | - | chr4.1:79735473-79735492 | None:intergenic | 35.0% |
| ! | TCTCATATAGGTTTGCTTCA+GGG | + | chr4.1:79735032-79735051 | MS.gene73303:intron | 35.0% |
| !! | GTTCTGGATGCATTTTTCTT+AGG | + | chr4.1:79734818-79734837 | MS.gene73303:CDS | 35.0% |
| !!! | CAGTCTGGTTTTTAAACCAT+TGG | + | chr4.1:79734577-79734596 | MS.gene73303:intron | 35.0% |
| !!! | CGGTGTTTTTAAAACGAAAC+CGG | + | chr4.1:79734100-79734119 | MS.gene73303:intron | 35.0% |
| !!! | CGGTTTCGTTTTAAAAACAC+CGG | - | chr4.1:79734102-79734121 | None:intergenic | 35.0% |
| AAACACATACTCCTCGGATT+AGG | - | chr4.1:79734265-79734284 | None:intergenic | 40.0% | |
| AACGAAACCGGAAATCAAAC+CGG | + | chr4.1:79734112-79734131 | MS.gene73303:intron | 40.0% | |
| CAAAATAGTTTACCAGAGGG+GGG | - | chr4.1:79733828-79733847 | None:intergenic | 40.0% | |
| CATATGGGTTTGGAAGAAGA+AGG | - | chr4.1:79733726-79733745 | None:intergenic | 40.0% | |
| GCTGGAAAGTTGAATGCATA+TGG | - | chr4.1:79733742-79733761 | None:intergenic | 40.0% | |
| GTAGTTTATAGTTGGGCACT+TGG | + | chr4.1:79735259-79735278 | MS.gene73303:intron | 40.0% | |
| TAAAAACCAGACTGAACTGG+TGG | - | chr4.1:79734571-79734590 | None:intergenic | 40.0% | |
| TAGAGTTGAACAACAACAGC+AGG | - | chr4.1:79735110-79735129 | None:intergenic | 40.0% | |
| TAGCAGCAGCAAAAATGTTC+TGG | + | chr4.1:79734802-79734821 | MS.gene73303:CDS | 40.0% | |
| TATGTGAATCATGTAGGCGA+TGG | + | chr4.1:79734776-79734795 | MS.gene73303:intron | 40.0% | |
| TCTAGGAAACACATACTCCT+CGG | - | chr4.1:79734271-79734290 | None:intergenic | 40.0% | |
| TGTAACAATACCTTCTTCCC+TGG | + | chr4.1:79733798-79733817 | MS.gene73303:CDS | 40.0% | |
| ! | AAAAGGAGTTTTCAGACCAC+TGG | + | chr4.1:79733768-79733787 | MS.gene73303:CDS | 40.0% |
| ! | AGTGGGCTCAATGTATGTTT+CGG | - | chr4.1:79735980-79735999 | None:intergenic | 40.0% |
| ! | GAGGATGTTGGAAAAGGTTT+TGG | - | chr4.1:79733700-79733719 | None:intergenic | 40.0% |
| ! | TTCTAACAGACTTGGTCACT+TGG | + | chr4.1:79734377-79734396 | MS.gene73303:intron | 40.0% |
| !! | GCTTGAATCTGAAGTGTTGA+TGG | - | chr4.1:79735605-79735624 | None:intergenic | 40.0% |
| !!! | GAAAAGGTTTTGGAGAACCT+AGG | - | chr4.1:79733690-79733709 | None:intergenic | 40.0% |
| AACAATACCTTCTTCCCTGG+TGG | + | chr4.1:79733801-79733820 | MS.gene73303:CDS | 45.0% | |
| AAGGTTGTTGGAGATGGTGA+AGG | - | chr4.1:79733660-79733679 | None:intergenic | 45.0% | |
| ACAATACCTTCTTCCCTGGT+GGG | + | chr4.1:79733802-79733821 | MS.gene73303:CDS | 45.0% | |
| ACATACATTGAGCCCACTGA+AGG | + | chr4.1:79735982-79736001 | MS.gene73303:CDS | 45.0% | |
| AGAAGAAGGAACGAGGATGT+TGG | - | chr4.1:79733712-79733731 | None:intergenic | 45.0% | |
| AGCTTATACAGAAGTCGTCG+TGG | + | chr4.1:79735885-79735904 | MS.gene73303:CDS | 45.0% | |
| AGGAACGAGGATGTTGGAAA+AGG | - | chr4.1:79733706-79733725 | None:intergenic | 45.0% | |
| AGGTTGTTGGAGATGGTGAA+GGG | - | chr4.1:79733659-79733678 | None:intergenic | 45.0% | |
| ATACATTGAGCCCACTGAAG+GGG | + | chr4.1:79735984-79736003 | MS.gene73303:CDS | 45.0% | |
| ATTGTTACAGCGAAGTCCAG+TGG | - | chr4.1:79733787-79733806 | None:intergenic | 45.0% | |
| CAATTGGCATTGTGTTGTGC+TGG | + | chr4.1:79734967-79734986 | MS.gene73303:intron | 45.0% | |
| CATACATTGAGCCCACTGAA+GGG | + | chr4.1:79735983-79736002 | MS.gene73303:CDS | 45.0% | |
| GATTAGGCATGTTCTGGTGT+CGG | - | chr4.1:79734249-79734268 | None:intergenic | 45.0% | |
| GGACAGAGCCAAAAAAGCAA+AGG | + | chr4.1:79735804-79735823 | MS.gene73303:CDS | 45.0% | |
| GGCCAAACCAATTGGCAAAT+TGG | + | chr4.1:79734528-79734547 | MS.gene73303:intron | 45.0% | |
| GGCCAATTTGCCAATTGGTT+TGG | - | chr4.1:79734533-79734552 | None:intergenic | 45.0% | |
| GTCGTGGATACATCTACTTC+AGG | + | chr4.1:79735901-79735920 | MS.gene73303:CDS | 45.0% | |
| GTTTGGAAGAAGAAGGAACG+AGG | - | chr4.1:79733719-79733738 | None:intergenic | 45.0% | |
| TCGTCAAGTAGAGGCTATAG+TGG | + | chr4.1:79735149-79735168 | MS.gene73303:intron | 45.0% | |
| TTATAGTTGGGCACTTGGGT+TGG | + | chr4.1:79735264-79735283 | MS.gene73303:intron | 45.0% | |
| TTGAATCCACCAGTTCAGTC+TGG | + | chr4.1:79734562-79734581 | MS.gene73303:intron | 45.0% | |
| !! | GCTAGAGCATTGTAGCGTTT+AGG | + | chr4.1:79735173-79735192 | MS.gene73303:intron | 45.0% |
| !! | TAGCTCACCGGTTTGATTTC+CGG | - | chr4.1:79734122-79734141 | None:intergenic | 45.0% |
| !!! | TTGTATTATTTTTTAATTTT+AGG | + | chr4.1:79733980-79733999 | MS.gene73303:intron | 5.0% |
| ACAAGCACGGCCAAACCAAT+TGG | + | chr4.1:79734520-79734539 | MS.gene73303:intron | 50.0% | |
| ACCAGAACATGCCTAATCCG+AGG | + | chr4.1:79734251-79734270 | MS.gene73303:intron | 50.0% | |
| CAACAACCTTCGCTTCTCCT+AGG | + | chr4.1:79733670-79733689 | MS.gene73303:CDS | 50.0% | |
| CTAGGAGAAGCGAAGGTTGT+TGG | - | chr4.1:79733672-79733691 | None:intergenic | 50.0% | |
| GAACGGGCCAATTTGCCAAT+TGG | - | chr4.1:79734538-79734557 | None:intergenic | 50.0% | |
| GAAGCGAAGGTTGTTGGAGA+TGG | - | chr4.1:79733666-79733685 | None:intergenic | 50.0% | |
| GCCAGACTGTGTTACAAGCA+CGG | + | chr4.1:79734507-79734526 | MS.gene73303:intron | 50.0% | |
| GGTGAGCTCTTGAGTACAGT+TGG | + | chr4.1:79734887-79734906 | MS.gene73303:CDS | 50.0% | |
| GGTTGTTGGAGATGGTGAAG+GGG | - | chr4.1:79733658-79733677 | None:intergenic | 50.0% | |
| GTCTGTGCTTCATAGCTCAC+CGG | - | chr4.1:79734134-79734153 | None:intergenic | 50.0% | |
| TGAAGCACAGACACAGACAC+TGG | + | chr4.1:79734142-79734161 | MS.gene73303:intron | 50.0% | |
| ! | TCCTCGGATTAGGCATGTTC+TGG | - | chr4.1:79734255-79734274 | None:intergenic | 50.0% |
| !! | CTGAACTGGTGGATTCAACC+AGG | - | chr4.1:79734560-79734579 | None:intergenic | 50.0% |
| !! | CTGGTGGATTCAACCAGGAA+CGG | - | chr4.1:79734555-79734574 | None:intergenic | 50.0% |
| !! | TGGTGGATTCAACCAGGAAC+GGG | - | chr4.1:79734554-79734573 | None:intergenic | 50.0% |
| AGATGGTGAAGGGGAGAGAC+TGG | - | chr4.1:79733649-79733668 | None:intergenic | 55.0% | |
| GAGCGCATTGAGTCGACACT+TGG | + | chr4.1:79734866-79734885 | MS.gene73303:CDS | 55.0% | |
| GCCGTGCTTGTAACACAGTC+TGG | - | chr4.1:79734511-79734530 | None:intergenic | 55.0% | |
| GGAGAACCTAGGAGAAGCGA+AGG | - | chr4.1:79733679-79733698 | None:intergenic | 55.0% | |
| TTGGCAAATTGGCCCGTTCC+TGG | + | chr4.1:79734539-79734558 | MS.gene73303:intron | 55.0% | |
| ! | AGCTACAGAGGCACAACCAC+AGG | + | chr4.1:79735843-79735862 | MS.gene73303:CDS | 55.0% |
| ! | GCTACAGAGGCACAACCACA+GGG | + | chr4.1:79735844-79735863 | MS.gene73303:CDS | 55.0% |
| AGCAGCGCGTGAAGCTACAG+AGG | + | chr4.1:79735831-79735850 | MS.gene73303:CDS | 60.0% | |
| CATTGAGCCCACTGAAGGGG+AGG | + | chr4.1:79735987-79736006 | MS.gene73303:CDS | 60.0% | |
| GACTCGGAAACCAGTCCCTG+TGG | - | chr4.1:79735862-79735881 | None:intergenic | 60.0% | |
| GTGGGATCCTCCCCTTCAGT+GGG | - | chr4.1:79735997-79736016 | None:intergenic | 60.0% | |
| TGTGGGATCCTCCCCTTCAG+TGG | - | chr4.1:79735998-79736017 | None:intergenic | 60.0% | |
| ! | AGAGGCACAACCACAGGGAC+TGG | + | chr4.1:79735849-79735868 | MS.gene73303:CDS | 60.0% |
| TACCAGAGGGGGGCCCACCA+GGG | - | chr4.1:79733818-79733837 | None:intergenic | 70.0% | |
| TTACCAGAGGGGGGCCCACC+AGG | - | chr4.1:79733819-79733838 | None:intergenic | 70.0% | |
| GGGGGGCCCACCAGGGAAGA+AGG | - | chr4.1:79733811-79733830 | None:intergenic | 75.0% | |
| ! | TTCCCTGGTGGGCCCCCCTC+TGG | + | chr4.1:79733813-79733832 | MS.gene73303:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 79733636 | 79736029 | 79733636 | ID=MS.gene73303 |
| chr4.1 | mRNA | 79733636 | 79736029 | 79733636 | ID=MS.gene73303.t1;Parent=MS.gene73303 |
| chr4.1 | exon | 79733636 | 79733834 | 79733636 | ID=MS.gene73303.t1.exon1;Parent=MS.gene73303.t1 |
| chr4.1 | CDS | 79733636 | 79733834 | 79733636 | ID=cds.MS.gene73303.t1;Parent=MS.gene73303.t1 |
| chr4.1 | exon | 79734792 | 79734952 | 79734792 | ID=MS.gene73303.t1.exon2;Parent=MS.gene73303.t1 |
| chr4.1 | CDS | 79734792 | 79734952 | 79734792 | ID=cds.MS.gene73303.t1;Parent=MS.gene73303.t1 |
| chr4.1 | exon | 79735793 | 79736029 | 79735793 | ID=MS.gene73303.t1.exon3;Parent=MS.gene73303.t1 |
| chr4.1 | CDS | 79735793 | 79736029 | 79735793 | ID=cds.MS.gene73303.t1;Parent=MS.gene73303.t1 |
| Gene Sequence |
| Protein sequence |
