Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86381.t1 | XP_003597879.1 | 100 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.90E-94 | 355.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86381.t1 | Q9R0P6 | 58.5 | 176 | 71 | 2 | 6 | 180 | 5 | 179 | 8.3e-51 | 201.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86381.t1 | Q2HUB9 | 100.0 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 1.3e-94 | 355.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049255 | MS.gene86381 | 0.838293 | 3.13E-57 | -1.69E-46 |
| MS.gene049340 | MS.gene86381 | 0.827559 | 1.46E-54 | -1.69E-46 |
| MS.gene049341 | MS.gene86381 | 0.848454 | 6.07E-60 | -1.69E-46 |
| MS.gene049580 | MS.gene86381 | 0.809249 | 2.08E-50 | -1.69E-46 |
| MS.gene049824 | MS.gene86381 | 0.835262 | 1.86E-56 | -1.69E-46 |
| MS.gene049825 | MS.gene86381 | 0.8584 | 8.45E-63 | -1.69E-46 |
| MS.gene049873 | MS.gene86381 | 0.829277 | 5.63E-55 | -1.69E-46 |
| MS.gene049887 | MS.gene86381 | 0.825385 | 4.83E-54 | -1.69E-46 |
| MS.gene050277 | MS.gene86381 | 0.857732 | 1.34E-62 | -1.69E-46 |
| MS.gene050437 | MS.gene86381 | 0.807341 | 5.30E-50 | -1.69E-46 |
| MS.gene050752 | MS.gene86381 | 0.819527 | 1.11E-52 | -1.69E-46 |
| MS.gene050807 | MS.gene86381 | 0.82919 | 5.91E-55 | -1.69E-46 |
| MS.gene050838 | MS.gene86381 | 0.817086 | 3.96E-52 | -1.69E-46 |
| MS.gene051063 | MS.gene86381 | 0.806431 | 8.25E-50 | -1.69E-46 |
| MS.gene051328 | MS.gene86381 | 0.820943 | 5.25E-53 | -1.69E-46 |
| MS.gene05134 | MS.gene86381 | 0.840885 | 6.64E-58 | -1.69E-46 |
| MS.gene051633 | MS.gene86381 | 0.802583 | 5.24E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene86381 | 0.831349 | 1.76E-55 | -1.69E-46 |
| MS.gene051719 | MS.gene86381 | 0.810678 | 1.02E-50 | -1.69E-46 |
| MS.gene051720 | MS.gene86381 | 0.802006 | 6.88E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene86381 | 0.833461 | 5.26E-56 | -1.69E-46 |
| MS.gene051748 | MS.gene86381 | 0.821479 | 3.95E-53 | -1.69E-46 |
| MS.gene051903 | MS.gene86381 | 0.839411 | 1.61E-57 | -1.69E-46 |
| MS.gene052133 | MS.gene86381 | 0.828875 | 7.05E-55 | -1.69E-46 |
| MS.gene052302 | MS.gene86381 | 0.801759 | 7.74E-49 | -1.69E-46 |
| MS.gene052879 | MS.gene86381 | 0.845977 | 2.90E-59 | -1.69E-46 |
| MS.gene052880 | MS.gene86381 | 0.829825 | 4.14E-55 | -1.69E-46 |
| MS.gene052947 | MS.gene86381 | 0.848718 | 5.13E-60 | -1.69E-46 |
| MS.gene053294 | MS.gene86381 | 0.804137 | 2.50E-49 | -1.69E-46 |
| MS.gene053581 | MS.gene86381 | 0.827719 | 1.34E-54 | -1.69E-46 |
| MS.gene053599 | MS.gene86381 | 0.816855 | 4.46E-52 | -1.69E-46 |
| MS.gene05364 | MS.gene86381 | 0.823414 | 1.40E-53 | -1.69E-46 |
| MS.gene053678 | MS.gene86381 | 0.823524 | 1.32E-53 | -1.69E-46 |
| MS.gene054250 | MS.gene86381 | 0.826536 | 2.57E-54 | -1.69E-46 |
| MS.gene054403 | MS.gene86381 | 0.820176 | 7.88E-53 | -1.69E-46 |
| MS.gene055162 | MS.gene86381 | 0.838547 | 2.69E-57 | -1.69E-46 |
| MS.gene055466 | MS.gene86381 | 0.800118 | 1.67E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene86381 | 0.809057 | 2.28E-50 | -1.69E-46 |
| MS.gene055512 | MS.gene86381 | 0.823785 | 1.15E-53 | -1.69E-46 |
| MS.gene055555 | MS.gene86381 | 0.846907 | 1.62E-59 | -1.69E-46 |
| MS.gene055580 | MS.gene86381 | -0.83192 | 1.27E-55 | -1.69E-46 |
| MS.gene055808 | MS.gene86381 | 0.812932 | 3.30E-51 | -1.69E-46 |
| MS.gene055891 | MS.gene86381 | 0.813394 | 2.62E-51 | -1.69E-46 |
| MS.gene056005 | MS.gene86381 | 0.802445 | 5.59E-49 | -1.69E-46 |
| MS.gene056043 | MS.gene86381 | -0.837779 | 4.25E-57 | -1.69E-46 |
| MS.gene056075 | MS.gene86381 | 0.839762 | 1.30E-57 | -1.69E-46 |
| MS.gene056091 | MS.gene86381 | 0.805506 | 1.29E-49 | -1.69E-46 |
| MS.gene056631 | MS.gene86381 | 0.837316 | 5.58E-57 | -1.69E-46 |
| MS.gene056760 | MS.gene86381 | 0.805751 | 1.15E-49 | -1.69E-46 |
| MS.gene057057 | MS.gene86381 | 0.828021 | 1.13E-54 | -1.69E-46 |
| MS.gene057060 | MS.gene86381 | 0.811315 | 7.44E-51 | -1.69E-46 |
| MS.gene057140 | MS.gene86381 | 0.802857 | 4.60E-49 | -1.69E-46 |
| MS.gene057234 | MS.gene86381 | 0.840439 | 8.69E-58 | -1.69E-46 |
| MS.gene057705 | MS.gene86381 | 0.887133 | 1.86E-72 | -1.69E-46 |
| MS.gene058055 | MS.gene86381 | 0.817295 | 3.55E-52 | -1.69E-46 |
| MS.gene058238 | MS.gene86381 | 0.807923 | 3.99E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene86381 | 0.820403 | 6.99E-53 | -1.69E-46 |
| MS.gene058906 | MS.gene86381 | 0.839653 | 1.39E-57 | -1.69E-46 |
| MS.gene05954 | MS.gene86381 | 0.820401 | 7.00E-53 | -1.69E-46 |
| MS.gene059898 | MS.gene86381 | 0.80592 | 1.06E-49 | -1.69E-46 |
| MS.gene06001 | MS.gene86381 | 0.861487 | 9.91E-64 | -1.69E-46 |
| MS.gene060165 | MS.gene86381 | 0.802318 | 5.94E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene86381 | 0.83394 | 3.99E-56 | -1.69E-46 |
| MS.gene060587 | MS.gene86381 | 0.823634 | 1.25E-53 | -1.69E-46 |
| MS.gene060619 | MS.gene86381 | 0.826159 | 3.16E-54 | -1.69E-46 |
| MS.gene060763 | MS.gene86381 | 0.815104 | 1.10E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene045264 | MS.gene86381 | PPI |
| MS.gene045262 | MS.gene86381 | PPI |
| MS.gene79108 | MS.gene86381 | PPI |
| MS.gene045260 | MS.gene86381 | PPI |
| MS.gene08445 | MS.gene86381 | PPI |
| MS.gene09040 | MS.gene86381 | PPI |
| MS.gene066813 | MS.gene86381 | PPI |
| MS.gene79110 | MS.gene86381 | PPI |
| MS.gene066829 | MS.gene86381 | PPI |
| MS.gene023404 | MS.gene86381 | PPI |
| MS.gene045263 | MS.gene86381 | PPI |
| MS.gene09203 | MS.gene86381 | PPI |
| MS.gene066812 | MS.gene86381 | PPI |
| MS.gene75597 | MS.gene86381 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86381.t1 | MTR_2g103570 | 100.000 | 180 | 0 | 0 | 1 | 180 | 1 | 180 | 5.11e-130 | 362 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene86381.t1 | AT1G52600 | 91.667 | 180 | 15 | 0 | 1 | 180 | 1 | 180 | 4.51e-121 | 339 |
| MS.gene86381.t1 | AT3G15710 | 85.556 | 180 | 26 | 0 | 1 | 180 | 1 | 180 | 2.07e-110 | 312 |
Find 48 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGTTGTCGTTGTTCTTTC+TGG | -0.006320 | 2.3:+1446103 | MS.gene86381:CDS |
| TATATTCTCATTGGTGCTTT+GGG | 0.216256 | 2.3:+1448084 | MS.gene86381:CDS |
| GCTGCAAAGGCACCACATTA+TGG | 0.262708 | 2.3:+1447442 | MS.gene86381:CDS |
| CGTTGTTCTTTCTGGAAGTA+TGG | 0.268459 | 2.3:+1446111 | MS.gene86381:CDS |
| GGTTCTTACCTTATGTTGGC+TGG | 0.291373 | 2.3:+1447774 | MS.gene86381:intron |
| TTACGTCTGCACTGATAATA+TGG | 0.295460 | 2.3:+1446047 | MS.gene86381:CDS |
| GTATATTCTCATTGGTGCTT+TGG | 0.303583 | 2.3:+1448083 | MS.gene86381:intron |
| GATCGTGCATCGTGTAATTA+AGG | 0.306443 | 2.3:+1446537 | MS.gene86381:CDS |
| GTACATGAAAGAGGAGATAC+TGG | 0.367204 | 2.3:+1447168 | MS.gene86381:CDS |
| TTGGCAGGAGATAACAACTA+TGG | 0.367451 | 2.3:+1447383 | MS.gene86381:intron |
| ACAATCTCTCCTGCGCGAAT+TGG | 0.370765 | 2.3:-1446335 | None:intergenic |
| CTGCAAAGGCACCACATTAT+GGG | 0.401647 | 2.3:+1447443 | MS.gene86381:CDS |
| ACGGATCTGAAGAGATTTGA+TGG | 0.414274 | 2.3:-1445232 | None:intergenic |
| ATGGCCAGCTTTGGCTGCAA+AGG | 0.415700 | 2.3:+1447429 | MS.gene86381:CDS |
| TGTATGCTCATGGCCAGCTT+TGG | 0.429153 | 2.3:+1447420 | MS.gene86381:CDS |
| GGCAGGTTCTTACCTTATGT+TGG | 0.435021 | 2.3:+1447770 | MS.gene86381:intron |
| CCAGAAAGAACAACGACAAC+AGG | 0.443989 | 2.3:-1446103 | None:intergenic |
| TCTTTCTGGAAGTATGGAAC+CGG | 0.447654 | 2.3:+1446117 | MS.gene86381:CDS |
| CTTGTTCTTACACATGAGTA+AGG | 0.448520 | 2.3:+1446310 | MS.gene86381:CDS |
| CTCACTCAGGCTGTTAGCCT+TGG | 0.449557 | 2.3:+1445261 | MS.gene86381:CDS |
| AGCAAACAAACCTTGATGAT+AGG | 0.465854 | 2.3:-1447821 | None:intergenic |
| GGTGCCTTTGCAGCCAAAGC+TGG | 0.467005 | 2.3:-1447433 | None:intergenic |
| CACATTATGGGTAGAGCTGT+TGG | 0.467483 | 2.3:+1447455 | MS.gene86381:CDS |
| GTTCTTACCTTATGTTGGCT+GGG | 0.476337 | 2.3:+1447775 | MS.gene86381:CDS |
| ATTGTCACCCAGCCAACATA+AGG | 0.486894 | 2.3:-1447782 | None:intergenic |
| TTGCTTACACGTTTGAATCC+CGG | 0.492003 | 2.3:-1446136 | None:intergenic |
| TGGCAGGAGATAACAACTAT+GGG | 0.501904 | 2.3:+1447384 | MS.gene86381:intron |
| AGAAACGCAATGGGTTTCGT+TGG | 0.517115 | 2.3:+1445195 | None:intergenic |
| ACATTATGGGTAGAGCTGTT+GGG | 0.526062 | 2.3:+1447456 | MS.gene86381:CDS |
| ATATTCTCATTGGTGCTTTG+GGG | 0.529101 | 2.3:+1448085 | MS.gene86381:CDS |
| CTTTCTGGAAGTATGGAACC+GGG | 0.531861 | 2.3:+1446118 | MS.gene86381:CDS |
| TTAATTACACGATGCACGAT+CGG | 0.532530 | 2.3:-1446535 | None:intergenic |
| AAGGCATTGATGTGCATCAC+TGG | 0.537420 | 2.3:+1446070 | MS.gene86381:CDS |
| GAGGTTGATGTTCTCACAAA+AGG | 0.541893 | 2.3:+1447192 | MS.gene86381:CDS |
| TGATAACTTCAAAAGAGTAA+AGG | 0.546067 | 2.3:+1448115 | MS.gene86381:CDS |
| CAAATCTCTTCAGATCCGTC+AGG | 0.547809 | 2.3:+1445236 | MS.gene86381:CDS |
| ATAACAACTATGGGGATGAC+AGG | 0.548283 | 2.3:+1447393 | MS.gene86381:CDS |
| GATCCGTCAGGTCCTCACTC+AGG | 0.557343 | 2.3:+1445248 | MS.gene86381:CDS |
| TACATGAAAGAGGAGATACT+GGG | 0.588815 | 2.3:+1447169 | MS.gene86381:CDS |
| GACAGGCTACTGTATGCTCA+TGG | 0.602506 | 2.3:+1447410 | MS.gene86381:CDS |
| GTCTGCACTGATAATATGGA+AGG | 0.605731 | 2.3:+1446051 | MS.gene86381:CDS |
| CAGCCTGAGTGAGGACCTGA+CGG | 0.616226 | 2.3:-1445251 | None:intergenic |
| AGTAAGGATCCAATTCGCGC+AGG | 0.635833 | 2.3:+1446326 | MS.gene86381:CDS |
| CAACAGCTCTACCCATAATG+TGG | 0.657840 | 2.3:-1447454 | None:intergenic |
| CAAGGCTAACAGCCTGAGTG+AGG | 0.659133 | 2.3:-1445260 | None:intergenic |
| GGCAGGAGATAACAACTATG+GGG | 0.694070 | 2.3:+1447385 | MS.gene86381:intron |
| TGAAAGAGGAGATACTGGGG+AGG | 0.732394 | 2.3:+1447173 | MS.gene86381:CDS |
| ACATGAAAGAGGAGATACTG+GGG | 0.746258 | 2.3:+1447170 | MS.gene86381:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTACATTTATGTATATTTA+TGG | + | chr2.3:1447885-1447904 | MS.gene86381:intron | 10.0% |
| !!! | TTAACTTTATTTTATCTTTT+TGG | + | chr2.3:1445845-1445864 | MS.gene86381:intron | 10.0% |
| !!! | TTTTAATCAATTATTATATG+GGG | + | chr2.3:1445480-1445499 | MS.gene86381:intron | 10.0% |
| !! | AGAAAAAGGAAATATAATAT+TGG | - | chr2.3:1447295-1447314 | None:intergenic | 15.0% |
| !! | TACGTTATACAATTTATATT+TGG | + | chr2.3:1445347-1445366 | MS.gene86381:intron | 15.0% |
| !!! | TCAATTTAGTTTATAATTCA+AGG | + | chr2.3:1445546-1445565 | MS.gene86381:intron | 15.0% |
| !! | ATCTTGTAACATAAAGATTA+AGG | + | chr2.3:1447496-1447515 | MS.gene86381:intron | 20.0% |
| !! | TAAATGGTTGTTTATCTTTA+AGG | + | chr2.3:1445600-1445619 | MS.gene86381:intron | 20.0% |
| !! | TATTAGATACAGAATTACTA+AGG | - | chr2.3:1446178-1446197 | None:intergenic | 20.0% |
| !! | TTAGTTGTCAATTTATATAG+TGG | + | chr2.3:1447318-1447337 | MS.gene86381:intron | 20.0% |
| !! | TTTATGGGTTTATTGATAAA+TGG | + | chr2.3:1445584-1445603 | MS.gene86381:intron | 20.0% |
| !!! | ATCATGATTTTTAAACCAAT+GGG | + | chr2.3:1447945-1447964 | MS.gene86381:intron | 20.0% |
| !!! | ATTGGTTTAAAAATCATGAT+AGG | - | chr2.3:1447945-1447964 | None:intergenic | 20.0% |
| !!! | TATCATGATTTTTAAACCAA+TGG | + | chr2.3:1447944-1447963 | MS.gene86381:intron | 20.0% |
| ! | AATAAACTGTTAATCCAAAC+AGG | + | chr2.3:1445928-1445947 | MS.gene86381:intron | 25.0% |
| ! | ATAAACTGTTAATCCAAACA+GGG | + | chr2.3:1445929-1445948 | MS.gene86381:intron | 25.0% |
| ! | ATCAAATTCACTATTGAGAT+TGG | - | chr2.3:1447272-1447291 | None:intergenic | 25.0% |
| ! | ATCACTAATCTGAGAAATAA+TGG | + | chr2.3:1447067-1447086 | MS.gene86381:intron | 25.0% |
| ! | ATTTCATTTCTTGAATGTGT+AGG | + | chr2.3:1446749-1446768 | MS.gene86381:intron | 25.0% |
| ! | CTATGAATAAAACAATGATC+TGG | - | chr2.3:1445990-1446009 | None:intergenic | 25.0% |
| ! | CTTGTTGCAATTCAAATTAT+AGG | - | chr2.3:1448027-1448046 | None:intergenic | 25.0% |
| ! | GAATTAGCGTATGATAAATT+AGG | - | chr2.3:1447666-1447685 | None:intergenic | 25.0% |
| ! | GATAAATAAGAACTAAAAGC+AGG | - | chr2.3:1446885-1446904 | None:intergenic | 25.0% |
| ! | TAAATGATAACACAATAGGT+TGG | - | chr2.3:1447850-1447869 | None:intergenic | 25.0% |
| ! | TATGTAGTTACAGTTTGAAT+AGG | - | chr2.3:1446779-1446798 | None:intergenic | 25.0% |
| ! | TCAAAAACATCAAAATTCGA+CGG | - | chr2.3:1445403-1445422 | None:intergenic | 25.0% |
| ! | TCAAATTCACTATTGAGATT+GGG | - | chr2.3:1447271-1447290 | None:intergenic | 25.0% |
| ! | TCCCTAAAGGAAAAAAAAAA+GGG | - | chr2.3:1446506-1446525 | None:intergenic | 25.0% |
| ! | TTGAAGTAAGTAAAACATAC+AGG | - | chr2.3:1446402-1446421 | None:intergenic | 25.0% |
| ! | TTTCATTTCTTGAATGTGTA+GGG | + | chr2.3:1446750-1446769 | MS.gene86381:intron | 25.0% |
| ! | TTTCTGTTGCTAATGAATAT+TGG | + | chr2.3:1446270-1446289 | MS.gene86381:intron | 25.0% |
| !! | TAAATGCTTGATCATTTTGT+AGG | + | chr2.3:1447146-1447165 | MS.gene86381:intron | 25.0% |
| !! | TGATATTAAGGTATTATGCA+TGG | + | chr2.3:1447569-1447588 | MS.gene86381:intron | 25.0% |
| !! | TTCCTTTCAATTTTAGATGT+GGG | + | chr2.3:1445516-1445535 | MS.gene86381:intron | 25.0% |
| !! | TTTCCTTTCAATTTTAGATG+TGG | + | chr2.3:1445515-1445534 | MS.gene86381:intron | 25.0% |
| !!! | AATGAATATTGGTTTTTGCA+GGG | + | chr2.3:1446281-1446300 | MS.gene86381:intron | 25.0% |
| !!! | ACCCTTTTTTTTTTCCTTTA+GGG | + | chr2.3:1446502-1446521 | MS.gene86381:intron | 25.0% |
| !!! | ATCTTTAAGGATTTTGATGA+GGG | + | chr2.3:1445613-1445632 | MS.gene86381:intron | 25.0% |
| !!! | TAATGAATATTGGTTTTTGC+AGG | + | chr2.3:1446280-1446299 | MS.gene86381:intron | 25.0% |
| !!! | TACCCTTTTTTTTTTCCTTT+AGG | + | chr2.3:1446501-1446520 | MS.gene86381:intron | 25.0% |
| !!! | TATCTTTAAGGATTTTGATG+AGG | + | chr2.3:1445612-1445631 | MS.gene86381:intron | 25.0% |
| !!! | TGATTGAGTTGAATTGAATT+GGG | - | chr2.3:1445302-1445321 | None:intergenic | 25.0% |
| !!! | TTGATTGAGTTGAATTGAAT+TGG | - | chr2.3:1445303-1445322 | None:intergenic | 25.0% |
| AAACAGCAAAATACAAGAGA+CGG | - | chr2.3:1447363-1447382 | None:intergenic | 30.0% | |
| ACATTGCTTGTATTTGTCAA+TGG | + | chr2.3:1447749-1447768 | MS.gene86381:intron | 30.0% | |
| CAGCTAAATGATAACACAAT+AGG | - | chr2.3:1447854-1447873 | None:intergenic | 30.0% | |
| GAATGAGATCTGTGATATTA+AGG | + | chr2.3:1447557-1447576 | MS.gene86381:intron | 30.0% | |
| GATAAATTAGGATAAACCCT+TGG | - | chr2.3:1447654-1447673 | None:intergenic | 30.0% | |
| GTCCCTAAAGGAAAAAAAAA+AGG | - | chr2.3:1446507-1446526 | None:intergenic | 30.0% | |
| GTGAGGAATTCTAATGTTAA+GGG | + | chr2.3:1445642-1445661 | MS.gene86381:intron | 30.0% | |
| TCTTAACTATCATTCAATCC+AGG | - | chr2.3:1447108-1447127 | None:intergenic | 30.0% | |
| TGGATAAGATTGATATTACC+TGG | + | chr2.3:1447087-1447106 | MS.gene86381:intron | 30.0% | |
| TGTGAGGAATTCTAATGTTA+AGG | + | chr2.3:1445641-1445660 | MS.gene86381:intron | 30.0% | |
| TGTTATCATTTAGCTGAAGT+TGG | + | chr2.3:1447858-1447877 | MS.gene86381:intron | 30.0% | |
| TTATCATACGCTAATTCCTA+CGG | + | chr2.3:1447669-1447688 | MS.gene86381:intron | 30.0% | |
| TTGACAACTAAACGAGAAAA+AGG | - | chr2.3:1447309-1447328 | None:intergenic | 30.0% | |
| ! | AACCCACATCTAAAATTGAA+AGG | - | chr2.3:1445521-1445540 | None:intergenic | 30.0% |
| ! | ATTTTGTAGGTACATGAAAG+AGG | + | chr2.3:1447159-1447178 | MS.gene86381:intron | 30.0% |
| ! | GTTTTGCAGTATATTCTCAT+TGG | + | chr2.3:1448075-1448094 | MS.gene86381:intron | 30.0% |
| ! | TATATTCTCATTGGTGCTTT+GGG | + | chr2.3:1448084-1448103 | MS.gene86381:CDS | 30.0% |
| ! | TTTTTCGTGTTGTGGTTTAT+GGG | + | chr2.3:1445569-1445588 | MS.gene86381:intron | 30.0% |
| !! | GATTGAGTTGAATTGAATTG+GGG | - | chr2.3:1445301-1445320 | None:intergenic | 30.0% |
| !! | TCTTTAAGGATTTTGATGAG+GGG | + | chr2.3:1445614-1445633 | MS.gene86381:intron | 30.0% |
| !!! | ATGAATATTGGTTTTTGCAG+GGG | + | chr2.3:1446282-1446301 | MS.gene86381:intron | 30.0% |
| !!! | CTCTTGTATTTTGCTGTTTT+TGG | + | chr2.3:1447364-1447383 | MS.gene86381:intron | 30.0% |
| AAAATTCGACGGTTTCAAAG+TGG | - | chr2.3:1445392-1445411 | None:intergenic | 35.0% | |
| AACAGCAAAATACAAGAGAC+GGG | - | chr2.3:1447362-1447381 | None:intergenic | 35.0% | |
| ATACAGGATATACAACAGAG+AGG | - | chr2.3:1446386-1446405 | None:intergenic | 35.0% | |
| ATAGGACCCAGATACAAAAA+TGG | - | chr2.3:1446848-1446867 | None:intergenic | 35.0% | |
| ATCCACACATAATTGTCTTC+TGG | + | chr2.3:1446679-1446698 | MS.gene86381:intron | 35.0% | |
| ATGATCTGGAAGCAATTCTA+TGG | - | chr2.3:1445976-1445995 | None:intergenic | 35.0% | |
| CTTGTTCTTACACATGAGTA+AGG | + | chr2.3:1446310-1446329 | MS.gene86381:CDS | 35.0% | |
| GACTGAAAAACCTATCATCA+AGG | + | chr2.3:1447811-1447830 | MS.gene86381:CDS | 35.0% | |
| GATCTACTTGCTCTAATGTA+AGG | - | chr2.3:1448005-1448024 | None:intergenic | 35.0% | |
| GGCGTTCATATAATCTACAT+AGG | - | chr2.3:1445955-1445974 | None:intergenic | 35.0% | |
| GTCTCACAGACTTATATGAT+TGG | - | chr2.3:1445697-1445716 | None:intergenic | 35.0% | |
| GTGTTAGATATTCCACAAGT+AGG | - | chr2.3:1447611-1447630 | None:intergenic | 35.0% | |
| TAAACCCTTGGTATGTTCAA+AGG | - | chr2.3:1447642-1447661 | None:intergenic | 35.0% | |
| TACATGAAAGAGGAGATACT+GGG | + | chr2.3:1447169-1447188 | MS.gene86381:CDS | 35.0% | |
| TATAAGTCTGTGAGACTGTT+TGG | + | chr2.3:1445701-1445720 | MS.gene86381:intron | 35.0% | |
| TATGGTGAAACCTATCATCA+AGG | + | chr2.3:1447903-1447922 | MS.gene86381:intron | 35.0% | |
| TCCTTACTGACAAAATCTGT+TGG | + | chr2.3:1446474-1446493 | MS.gene86381:intron | 35.0% | |
| TGAACCTTTGAACATACCAA+GGG | + | chr2.3:1447635-1447654 | MS.gene86381:intron | 35.0% | |
| TGACACTGTACTGTTATTGT+AGG | - | chr2.3:1446205-1446224 | None:intergenic | 35.0% | |
| TTAAGGTAAGCTCAGTATGT+TGG | + | chr2.3:1446554-1446573 | MS.gene86381:intron | 35.0% | |
| TTAATTACACGATGCACGAT+CGG | - | chr2.3:1446538-1446557 | None:intergenic | 35.0% | |
| TTGAACCTTTGAACATACCA+AGG | + | chr2.3:1447634-1447653 | MS.gene86381:intron | 35.0% | |
| ! | AAGCATTTAGAGTCTCAAAC+AGG | - | chr2.3:1447135-1447154 | None:intergenic | 35.0% |
| ! | AGCAAACAAACCTTGATGAT+AGG | - | chr2.3:1447824-1447843 | None:intergenic | 35.0% |
| ! | ATATTCTCATTGGTGCTTTG+GGG | + | chr2.3:1448085-1448104 | MS.gene86381:CDS | 35.0% |
| ! | ATGATAACACAATAGGTTGG+CGG | - | chr2.3:1447847-1447866 | None:intergenic | 35.0% |
| ! | ATTCAAGGTTTTTCGTGTTG+TGG | + | chr2.3:1445561-1445580 | MS.gene86381:intron | 35.0% |
| ! | ATTTGGTAGCTACATTGATC+TGG | + | chr2.3:1445364-1445383 | MS.gene86381:intron | 35.0% |
| ! | CATAAGCAAACCTTGATGAT+AGG | - | chr2.3:1447916-1447935 | None:intergenic | 35.0% |
| ! | CGAAACATGCTTTGTTCTAT+AGG | - | chr2.3:1447703-1447722 | None:intergenic | 35.0% |
| ! | CTATCATCAAGGTTTGCTTA+TGG | + | chr2.3:1447914-1447933 | MS.gene86381:intron | 35.0% |
| ! | GTATATTCTCATTGGTGCTT+TGG | + | chr2.3:1448083-1448102 | MS.gene86381:intron | 35.0% |
| ! | GTTTTTCGTGTTGTGGTTTA+TGG | + | chr2.3:1445568-1445587 | MS.gene86381:intron | 35.0% |
| ! | TCTAATGTTAAGGGCATGTT+TGG | + | chr2.3:1445651-1445670 | MS.gene86381:intron | 35.0% |
| ! | TTACGTCTGCACTGATAATA+TGG | + | chr2.3:1446047-1446066 | MS.gene86381:CDS | 35.0% |
| ! | TTTGGTAGCTACATTGATCT+GGG | + | chr2.3:1445365-1445384 | MS.gene86381:intron | 35.0% |
| !!! | TGAATATTGGTTTTTGCAGG+GGG | + | chr2.3:1446283-1446302 | MS.gene86381:intron | 35.0% |
| !!! | TGTATTTTGCTGTTTTTGGC+AGG | + | chr2.3:1447368-1447387 | MS.gene86381:intron | 35.0% |
| AAGTGTCAACTTGTGGAAAC+TGG | + | chr2.3:1447032-1447051 | MS.gene86381:intron | 40.0% | |
| ACACATAATTGTCTTCTGGC+TGG | + | chr2.3:1446683-1446702 | MS.gene86381:intron | 40.0% | |
| ACATGAAAGAGGAGATACTG+GGG | + | chr2.3:1447170-1447189 | MS.gene86381:CDS | 40.0% | |
| ACATTATGGGTAGAGCTGTT+GGG | + | chr2.3:1447456-1447475 | MS.gene86381:CDS | 40.0% | |
| ACATTGTGAACTGATGCCAT+TGG | + | chr2.3:1446940-1446959 | MS.gene86381:intron | 40.0% | |
| ACCAGAGGTTCAAAAAGTGA+AGG | - | chr2.3:1446974-1446993 | None:intergenic | 40.0% | |
| ACGGATCTGAAGAGATTTGA+TGG | - | chr2.3:1445235-1445254 | None:intergenic | 40.0% | |
| AGAGGTTCAAAAAGTGAAGG+AGG | - | chr2.3:1446971-1446990 | None:intergenic | 40.0% | |
| AGCCAGAAGACAATTATGTG+TGG | - | chr2.3:1446684-1446703 | None:intergenic | 40.0% | |
| AGTGGAAAATCATAGCCCAT+TGG | - | chr2.3:1447963-1447982 | None:intergenic | 40.0% | |
| ATAACAACTATGGGGATGAC+AGG | + | chr2.3:1447393-1447412 | MS.gene86381:CDS | 40.0% | |
| CAGGTAGTGACTATGTTGAT+AGG | - | chr2.3:1446866-1446885 | None:intergenic | 40.0% | |
| CATTTGCAAGTGTCAACTTG+TGG | + | chr2.3:1447025-1447044 | MS.gene86381:intron | 40.0% | |
| GAAAAAGTTGTTCACAGTGC+TGG | + | chr2.3:1446714-1446733 | MS.gene86381:intron | 40.0% | |
| GAGCTTACCAAGCTTGATTT+GGG | + | chr2.3:1446815-1446834 | MS.gene86381:intron | 40.0% | |
| GATCGTGCATCGTGTAATTA+AGG | + | chr2.3:1446537-1446556 | MS.gene86381:CDS | 40.0% | |
| GTACATGAAAGAGGAGATAC+TGG | + | chr2.3:1447168-1447187 | MS.gene86381:CDS | 40.0% | |
| TAATCTACATAGGCCCTGTT+TGG | - | chr2.3:1445945-1445964 | None:intergenic | 40.0% | |
| TCTATAGGAATGCAAACCGT+AGG | - | chr2.3:1447688-1447707 | None:intergenic | 40.0% | |
| TGAGCTTACCAAGCTTGATT+TGG | + | chr2.3:1446814-1446833 | MS.gene86381:intron | 40.0% | |
| TGCTTGAAGATACCTACTTG+TGG | + | chr2.3:1447596-1447615 | MS.gene86381:intron | 40.0% | |
| TGCTTGTATTTGTCAATGGC+AGG | + | chr2.3:1447753-1447772 | MS.gene86381:intron | 40.0% | |
| TGGCAGGAGATAACAACTAT+GGG | + | chr2.3:1447384-1447403 | MS.gene86381:intron | 40.0% | |
| TTGCTTACACGTTTGAATCC+CGG | - | chr2.3:1446139-1446158 | None:intergenic | 40.0% | |
| TTGGCAGGAGATAACAACTA+TGG | + | chr2.3:1447383-1447402 | MS.gene86381:intron | 40.0% | |
| ! | CGTTGTTCTTTCTGGAAGTA+TGG | + | chr2.3:1446111-1446130 | MS.gene86381:CDS | 40.0% |
| ! | GCCAACAGATTTTGTCAGTA+AGG | - | chr2.3:1446478-1446497 | None:intergenic | 40.0% |
| ! | GTCTGCACTGATAATATGGA+AGG | + | chr2.3:1446051-1446070 | MS.gene86381:CDS | 40.0% |
| ! | GTTCTTACCTTATGTTGGCT+GGG | + | chr2.3:1447775-1447794 | MS.gene86381:CDS | 40.0% |
| ! | TCTTTCTGGAAGTATGGAAC+CGG | + | chr2.3:1446117-1446136 | MS.gene86381:CDS | 40.0% |
| ! | TGCTGAATGTGACTTTGAGA+CGG | + | chr2.3:1446612-1446631 | MS.gene86381:intron | 40.0% |
| ! | TGTCTTCTGGCTGGAATATT+AGG | + | chr2.3:1446692-1446711 | MS.gene86381:intron | 40.0% |
| ! | TGTTAAGGGCATGTTTGGAT+TGG | + | chr2.3:1445656-1445675 | MS.gene86381:intron | 40.0% |
| ! | TTTTCCTTGTGTTCTGCTTC+AGG | + | chr2.3:1446016-1446035 | MS.gene86381:intron | 40.0% |
| !! | GAGGTTGATGTTCTCACAAA+AGG | + | chr2.3:1447192-1447211 | MS.gene86381:CDS | 40.0% |
| !! | GTGGGTCCATTTTTGTATCT+GGG | + | chr2.3:1446839-1446858 | MS.gene86381:intron | 40.0% |
| !! | GTTGACTTGAGAGAGAAAAG+TGG | - | chr2.3:1447981-1448000 | None:intergenic | 40.0% |
| !! | TGTGGGTCCATTTTTGTATC+TGG | + | chr2.3:1446838-1446857 | MS.gene86381:intron | 40.0% |
| !!! | TCCTTCACTTTTTGAACCTC+TGG | + | chr2.3:1446970-1446989 | MS.gene86381:intron | 40.0% |
| AACTTGTGGAAACTGGAGAG+TGG | + | chr2.3:1447039-1447058 | MS.gene86381:intron | 45.0% | |
| ACCTTCTCATGTTAGAGCCT+TGG | + | chr2.3:1446645-1446664 | MS.gene86381:intron | 45.0% | |
| AGTAGTTCAAACAGCACCAG+AGG | - | chr2.3:1446989-1447008 | None:intergenic | 45.0% | |
| AGTGAAGGAGGAACTTCCAA+TGG | - | chr2.3:1446959-1446978 | None:intergenic | 45.0% | |
| ATTGTCACCCAGCCAACATA+AGG | - | chr2.3:1447785-1447804 | None:intergenic | 45.0% | |
| CAAATCTCTTCAGATCCGTC+AGG | + | chr2.3:1445236-1445255 | MS.gene86381:CDS | 45.0% | |
| CAACAGCTCTACCCATAATG+TGG | - | chr2.3:1447457-1447476 | None:intergenic | 45.0% | |
| CACATTATGGGTAGAGCTGT+TGG | + | chr2.3:1447455-1447474 | MS.gene86381:CDS | 45.0% | |
| CCAGAAAGAACAACGACAAC+AGG | - | chr2.3:1446106-1446125 | None:intergenic | 45.0% | |
| CCTGTTGTCGTTGTTCTTTC+TGG | + | chr2.3:1446103-1446122 | MS.gene86381:CDS | 45.0% | |
| GGCAGGAGATAACAACTATG+GGG | + | chr2.3:1447385-1447404 | MS.gene86381:intron | 45.0% | |
| GGCAGGTTCTTACCTTATGT+TGG | + | chr2.3:1447770-1447789 | MS.gene86381:intron | 45.0% | |
| GGTTCTTACCTTATGTTGGC+TGG | + | chr2.3:1447774-1447793 | MS.gene86381:intron | 45.0% | |
| GTGGATCATCTCATGATCCA+AGG | - | chr2.3:1446665-1446684 | None:intergenic | 45.0% | |
| TTTGATGAGGGGAGATTGTG+AGG | + | chr2.3:1445625-1445644 | MS.gene86381:intron | 45.0% | |
| ! | AAGTTGTTCACAGTGCTGGA+TGG | + | chr2.3:1446718-1446737 | MS.gene86381:intron | 45.0% |
| ! | CTTTCTGGAAGTATGGAACC+GGG | + | chr2.3:1446118-1446137 | MS.gene86381:CDS | 45.0% |
| ! | TCCAAGGCTCTAACATGAGA+AGG | - | chr2.3:1446649-1446668 | None:intergenic | 45.0% |
| !! | AAGGCATTGATGTGCATCAC+TGG | + | chr2.3:1446070-1446089 | MS.gene86381:CDS | 45.0% |
| !! | ACCAAGCTTGATTTGGGTGT+GGG | + | chr2.3:1446821-1446840 | MS.gene86381:intron | 45.0% |
| !! | CTGCAAAGGCACCACATTAT+GGG | + | chr2.3:1447443-1447462 | MS.gene86381:CDS | 45.0% |
| !! | TACCAAGCTTGATTTGGGTG+TGG | + | chr2.3:1446820-1446839 | MS.gene86381:intron | 45.0% |
| !! | ATATAATAATTGATTAAAAT+TGG | - | chr2.3:1445479-1445498 | None:intergenic | 5.0% |
| !! | CAATAAAAAAAAAATATATA+AGG | + | chr2.3:1446911-1446930 | MS.gene86381:intron | 5.0% |
| !!! | AATTTTAATCAATTATTATA+TGG | + | chr2.3:1445478-1445497 | MS.gene86381:intron | 5.0% |
| !!! | ATTTTAATCAATTATTATAT+GGG | + | chr2.3:1445479-1445498 | MS.gene86381:intron | 5.0% |
| !!! | TTTTTATTTTTGTATTTTTA+GGG | + | chr2.3:1445438-1445457 | MS.gene86381:intron | 5.0% |
| !!! | TTTTTTATTTTTGTATTTTT+AGG | + | chr2.3:1445437-1445456 | MS.gene86381:intron | 5.0% |
| ACAATCTCTCCTGCGCGAAT+TGG | - | chr2.3:1446338-1446357 | None:intergenic | 50.0% | |
| ACCCACACCCAAATCAAGCT+TGG | - | chr2.3:1446825-1446844 | None:intergenic | 50.0% | |
| AGTAAGGATCCAATTCGCGC+AGG | + | chr2.3:1446326-1446345 | MS.gene86381:CDS | 50.0% | |
| CATGCCTGAAGCAGAACACA+AGG | - | chr2.3:1446023-1446042 | None:intergenic | 50.0% | |
| GACAGGCTACTGTATGCTCA+TGG | + | chr2.3:1447410-1447429 | MS.gene86381:CDS | 50.0% | |
| GGGAAAGAGAGAACTGACCA+AGG | - | chr2.3:1445281-1445300 | None:intergenic | 50.0% | |
| TCGGAATCTCTCGTCCCTAA+AGG | - | chr2.3:1446519-1446538 | None:intergenic | 50.0% | |
| TGAAAGAGGAGATACTGGGG+AGG | + | chr2.3:1447173-1447192 | MS.gene86381:CDS | 50.0% | |
| TGTATGCTCATGGCCAGCTT+TGG | + | chr2.3:1447420-1447439 | MS.gene86381:CDS | 50.0% | |
| ! | TGTTCACAGTGCTGGATGGA+GGG | + | chr2.3:1446722-1446741 | MS.gene86381:intron | 50.0% |
| ! | TTGTTCACAGTGCTGGATGG+AGG | + | chr2.3:1446721-1446740 | MS.gene86381:intron | 50.0% |
| !! | GCTGCAAAGGCACCACATTA+TGG | + | chr2.3:1447442-1447461 | MS.gene86381:CDS | 50.0% |
| CAAGGCTAACAGCCTGAGTG+AGG | - | chr2.3:1445263-1445282 | None:intergenic | 55.0% | |
| ! | ATGGCCAGCTTTGGCTGCAA+AGG | + | chr2.3:1447429-1447448 | MS.gene86381:CDS | 55.0% |
| ! | CTCACTCAGGCTGTTAGCCT+TGG | + | chr2.3:1445261-1445280 | MS.gene86381:CDS | 55.0% |
| CAGCCTGAGTGAGGACCTGA+CGG | - | chr2.3:1445254-1445273 | None:intergenic | 60.0% | |
| GATCCGTCAGGTCCTCACTC+AGG | + | chr2.3:1445248-1445267 | MS.gene86381:CDS | 60.0% | |
| GGTGCCTTTGCAGCCAAAGC+TGG | - | chr2.3:1447436-1447455 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 1445204 | 1448134 | 1445204 | ID=MS.gene86381 |
| chr2.3 | mRNA | 1445204 | 1448134 | 1445204 | ID=MS.gene86381.t1;Parent=MS.gene86381 |
| chr2.3 | exon | 1445204 | 1445282 | 1445204 | ID=MS.gene86381.t1.exon1;Parent=MS.gene86381.t1 |
| chr2.3 | CDS | 1445204 | 1445282 | 1445204 | ID=cds.MS.gene86381.t1;Parent=MS.gene86381.t1 |
| chr2.3 | exon | 1446038 | 1446150 | 1446038 | ID=MS.gene86381.t1.exon2;Parent=MS.gene86381.t1 |
| chr2.3 | CDS | 1446038 | 1446150 | 1446038 | ID=cds.MS.gene86381.t1;Parent=MS.gene86381.t1 |
| chr2.3 | exon | 1446302 | 1446373 | 1446302 | ID=MS.gene86381.t1.exon3;Parent=MS.gene86381.t1 |
| chr2.3 | CDS | 1446302 | 1446373 | 1446302 | ID=cds.MS.gene86381.t1;Parent=MS.gene86381.t1 |
| chr2.3 | exon | 1446523 | 1446558 | 1446523 | ID=MS.gene86381.t1.exon4;Parent=MS.gene86381.t1 |
| chr2.3 | CDS | 1446523 | 1446558 | 1446523 | ID=cds.MS.gene86381.t1;Parent=MS.gene86381.t1 |
| chr2.3 | exon | 1447168 | 1447213 | 1447168 | ID=MS.gene86381.t1.exon5;Parent=MS.gene86381.t1 |
| chr2.3 | CDS | 1447168 | 1447213 | 1447168 | ID=cds.MS.gene86381.t1;Parent=MS.gene86381.t1 |
| chr2.3 | exon | 1447390 | 1447477 | 1447390 | ID=MS.gene86381.t1.exon6;Parent=MS.gene86381.t1 |
| chr2.3 | CDS | 1447390 | 1447477 | 1447390 | ID=cds.MS.gene86381.t1;Parent=MS.gene86381.t1 |
| chr2.3 | exon | 1447775 | 1447832 | 1447775 | ID=MS.gene86381.t1.exon7;Parent=MS.gene86381.t1 |
| chr2.3 | CDS | 1447775 | 1447832 | 1447775 | ID=cds.MS.gene86381.t1;Parent=MS.gene86381.t1 |
| chr2.3 | exon | 1448084 | 1448134 | 1448084 | ID=MS.gene86381.t1.exon8;Parent=MS.gene86381.t1 |
| chr2.3 | CDS | 1448084 | 1448134 | 1448084 | ID=cds.MS.gene86381.t1;Parent=MS.gene86381.t1 |
| Gene Sequence |
| Protein sequence |
