Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91282.t1 | XP_024626891.1 | 99.5 | 194 | 1 | 0 | 5 | 198 | 131 | 324 | 1.60E-94 | 355.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91282.t1 | A0A396K343 | 99.5 | 194 | 1 | 0 | 5 | 198 | 131 | 324 | 1.1e-94 | 355.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene91282 | 0.805666 | 1.20E-49 | -1.69E-46 |
| MS.gene049222 | MS.gene91282 | 0.848208 | 7.10E-60 | -1.69E-46 |
| MS.gene049232 | MS.gene91282 | 0.836136 | 1.12E-56 | -1.69E-46 |
| MS.gene049285 | MS.gene91282 | 0.826979 | 2.01E-54 | -1.69E-46 |
| MS.gene049320 | MS.gene91282 | 0.819943 | 8.91E-53 | -1.69E-46 |
| MS.gene049633 | MS.gene91282 | 0.830414 | 2.98E-55 | -1.69E-46 |
| MS.gene05010 | MS.gene91282 | 0.810327 | 1.22E-50 | -1.69E-46 |
| MS.gene050323 | MS.gene91282 | 0.854712 | 1.03E-61 | -1.69E-46 |
| MS.gene050504 | MS.gene91282 | 0.845218 | 4.66E-59 | -1.69E-46 |
| MS.gene050518 | MS.gene91282 | 0.824352 | 8.45E-54 | -1.69E-46 |
| MS.gene050577 | MS.gene91282 | 0.829884 | 4.01E-55 | -1.69E-46 |
| MS.gene050612 | MS.gene91282 | 0.828719 | 7.69E-55 | -1.69E-46 |
| MS.gene050675 | MS.gene91282 | 0.802468 | 5.53E-49 | -1.69E-46 |
| MS.gene050747 | MS.gene91282 | 0.844253 | 8.48E-59 | -1.69E-46 |
| MS.gene05080 | MS.gene91282 | 0.872669 | 2.66E-67 | -1.69E-46 |
| MS.gene050868 | MS.gene91282 | 0.874233 | 7.92E-68 | -1.69E-46 |
| MS.gene050871 | MS.gene91282 | 0.876833 | 1.02E-68 | -1.69E-46 |
| MS.gene050950 | MS.gene91282 | 0.836924 | 7.03E-57 | -1.69E-46 |
| MS.gene050986 | MS.gene91282 | 0.829389 | 5.29E-55 | -1.69E-46 |
| MS.gene051838 | MS.gene91282 | 0.811554 | 6.61E-51 | -1.69E-46 |
| MS.gene052066 | MS.gene91282 | 0.81168 | 6.20E-51 | -1.69E-46 |
| MS.gene052164 | MS.gene91282 | 0.867207 | 1.62E-65 | -1.69E-46 |
| MS.gene052482 | MS.gene91282 | 0.820222 | 7.69E-53 | -1.69E-46 |
| MS.gene052486 | MS.gene91282 | 0.821411 | 4.10E-53 | -1.69E-46 |
| MS.gene052503 | MS.gene91282 | 0.808823 | 2.56E-50 | -1.69E-46 |
| MS.gene052506 | MS.gene91282 | 0.810981 | 8.80E-51 | -1.69E-46 |
| MS.gene052823 | MS.gene91282 | 0.805595 | 1.24E-49 | -1.69E-46 |
| MS.gene052825 | MS.gene91282 | 0.802864 | 4.58E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene91282 | 0.846596 | 1.97E-59 | -1.69E-46 |
| MS.gene053203 | MS.gene91282 | 0.846649 | 1.90E-59 | -1.69E-46 |
| MS.gene053207 | MS.gene91282 | 0.806794 | 6.92E-50 | -1.69E-46 |
| MS.gene053213 | MS.gene91282 | 0.802263 | 6.10E-49 | -1.69E-46 |
| MS.gene053286 | MS.gene91282 | 0.812783 | 3.56E-51 | -1.69E-46 |
| MS.gene053436 | MS.gene91282 | 0.803865 | 2.84E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene91282 | 0.823069 | 1.69E-53 | -1.69E-46 |
| MS.gene053626 | MS.gene91282 | 0.892845 | 1.09E-74 | -1.69E-46 |
| MS.gene053632 | MS.gene91282 | 0.826242 | 3.02E-54 | -1.69E-46 |
| MS.gene053633 | MS.gene91282 | 0.829245 | 5.73E-55 | -1.69E-46 |
| MS.gene053916 | MS.gene91282 | 0.81052 | 1.11E-50 | -1.69E-46 |
| MS.gene054003 | MS.gene91282 | 0.863532 | 2.33E-64 | -1.69E-46 |
| MS.gene054408 | MS.gene91282 | 0.805644 | 1.21E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene91282 | 0.862377 | 5.29E-64 | -1.69E-46 |
| MS.gene054600 | MS.gene91282 | 0.809984 | 1.44E-50 | -1.69E-46 |
| MS.gene054642 | MS.gene91282 | 0.809267 | 2.06E-50 | -1.69E-46 |
| MS.gene05470 | MS.gene91282 | 0.802808 | 4.71E-49 | -1.69E-46 |
| MS.gene054954 | MS.gene91282 | 0.830132 | 3.49E-55 | -1.69E-46 |
| MS.gene055362 | MS.gene91282 | 0.808035 | 3.77E-50 | -1.69E-46 |
| MS.gene055502 | MS.gene91282 | 0.830615 | 2.66E-55 | -1.69E-46 |
| MS.gene055577 | MS.gene91282 | 0.837889 | 3.98E-57 | -1.69E-46 |
| MS.gene055748 | MS.gene91282 | 0.843472 | 1.37E-58 | -1.69E-46 |
| MS.gene055750 | MS.gene91282 | 0.851356 | 9.36E-61 | -1.69E-46 |
| MS.gene055751 | MS.gene91282 | 0.840266 | 9.65E-58 | -1.69E-46 |
| MS.gene055776 | MS.gene91282 | 0.804955 | 1.68E-49 | -1.69E-46 |
| MS.gene05589 | MS.gene91282 | 0.82245 | 2.35E-53 | -1.69E-46 |
| MS.gene055941 | MS.gene91282 | 0.805487 | 1.30E-49 | -1.69E-46 |
| MS.gene056040 | MS.gene91282 | 0.814361 | 1.60E-51 | -1.69E-46 |
| MS.gene056046 | MS.gene91282 | 0.801626 | 8.24E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene91282 | 0.834355 | 3.14E-56 | -1.69E-46 |
| MS.gene056446 | MS.gene91282 | 0.815954 | 7.09E-52 | -1.69E-46 |
| MS.gene056504 | MS.gene91282 | 0.840451 | 8.63E-58 | -1.69E-46 |
| MS.gene056510 | MS.gene91282 | 0.882041 | 1.45E-70 | -1.69E-46 |
| MS.gene056657 | MS.gene91282 | 0.828941 | 6.79E-55 | -1.69E-46 |
| MS.gene057086 | MS.gene91282 | 0.814245 | 1.70E-51 | -1.69E-46 |
| MS.gene057734 | MS.gene91282 | 0.809987 | 1.44E-50 | -1.69E-46 |
| MS.gene05787 | MS.gene91282 | 0.84948 | 3.15E-60 | -1.69E-46 |
| MS.gene058157 | MS.gene91282 | 0.805409 | 1.35E-49 | -1.69E-46 |
| MS.gene05837 | MS.gene91282 | 0.811399 | 7.14E-51 | -1.69E-46 |
| MS.gene058419 | MS.gene91282 | 0.802115 | 6.54E-49 | -1.69E-46 |
| MS.gene058773 | MS.gene91282 | 0.822434 | 2.37E-53 | -1.69E-46 |
| MS.gene059022 | MS.gene91282 | 0.807371 | 5.22E-50 | -1.69E-46 |
| MS.gene059367 | MS.gene91282 | 0.859403 | 4.24E-63 | -1.69E-46 |
| MS.gene059667 | MS.gene91282 | 0.821437 | 4.04E-53 | -1.69E-46 |
| MS.gene059699 | MS.gene91282 | -0.801535 | 8.60E-49 | -1.69E-46 |
| MS.gene059703 | MS.gene91282 | -0.811099 | 8.29E-51 | -1.69E-46 |
| MS.gene059718 | MS.gene91282 | 0.840994 | 6.22E-58 | -1.69E-46 |
| MS.gene059865 | MS.gene91282 | 0.852956 | 3.28E-61 | -1.69E-46 |
| MS.gene060295 | MS.gene91282 | 0.940161 | 3.74E-100 | -1.69E-46 |
| MS.gene060482 | MS.gene91282 | 0.825271 | 5.13E-54 | -1.69E-46 |
| MS.gene060762 | MS.gene91282 | 0.830747 | 2.47E-55 | -1.69E-46 |
| MS.gene060778 | MS.gene91282 | 0.830756 | 2.46E-55 | -1.69E-46 |
| MS.gene06077 | MS.gene91282 | 0.810432 | 1.16E-50 | -1.69E-46 |
| MS.gene06097 | MS.gene91282 | 0.810753 | 9.85E-51 | -1.69E-46 |
| MS.gene060982 | MS.gene91282 | 0.841628 | 4.23E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91282.t1 | MTR_6g008890 | 30.380 | 158 | 97 | 4 | 5 | 157 | 139 | 288 | 5.16e-11 | 61.2 |
| MS.gene91282.t1 | MTR_4g071610 | 30.380 | 158 | 97 | 4 | 5 | 157 | 139 | 288 | 5.16e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91282.t1 | AT2G14910 | 56.061 | 198 | 82 | 1 | 1 | 198 | 143 | 335 | 1.02e-65 | 206 |
| MS.gene91282.t1 | AT2G14910 | 56.061 | 198 | 82 | 1 | 1 | 198 | 143 | 335 | 2.38e-65 | 206 |
| MS.gene91282.t1 | AT5G14970 | 38.462 | 156 | 85 | 4 | 5 | 160 | 146 | 290 | 4.66e-19 | 84.0 |
Find 37 sgRNAs with CRISPR-Local
Find 153 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAAGAAAAGAATGATTTAC+TGG | 0.277554 | 1.3:-73269349 | MS.gene91282:CDS |
| GAGGGCTTTGAATGCATCTT+AGG | 0.310216 | 1.3:+73268413 | None:intergenic |
| CTTCAAATGCAGCAATTTGT+TGG | 0.343190 | 1.3:-73269372 | MS.gene91282:CDS |
| ATTTACATCCCCTGAGCTTA+AGG | 0.344914 | 1.3:-73268480 | MS.gene91282:CDS |
| TGCTGAGTATAGGCTTTGTT+TGG | 0.347450 | 1.3:-73270311 | MS.gene91282:CDS |
| AACTTAGTACTTTCTGCCTT+CGG | 0.377112 | 1.3:+73270250 | None:intergenic |
| GAGATCGCTTCAACCTGAAC+AGG | 0.407417 | 1.3:-73269319 | MS.gene91282:intron |
| ACAAAAGGCAAAACCTGTTC+AGG | 0.409693 | 1.3:+73269306 | None:intergenic |
| AAGCTCAGGGGATGTAAATT+CGG | 0.424523 | 1.3:+73268484 | None:intergenic |
| TTGAATGCATCTTAGGAGAA+AGG | 0.461924 | 1.3:+73268420 | None:intergenic |
| AGAAATATATTCTTGAGCTT+CGG | 0.466226 | 1.3:+73270102 | None:intergenic |
| AAGCTTTATTCATGTACTAC+AGG | 0.475618 | 1.3:-73270348 | None:intergenic |
| AGGATGATGTCCTTAAGCTC+AGG | 0.490001 | 1.3:+73268470 | None:intergenic |
| CATTGCGCAATGCTGAGTAT+AGG | 0.493261 | 1.3:-73270321 | MS.gene91282:CDS |
| ACAGTTGGATCAGCAAATGC+TGG | 0.494546 | 1.3:-73268371 | MS.gene91282:CDS |
| GGAGACCGTGGACAACAGAT+AGG | 0.510446 | 1.3:+73268450 | None:intergenic |
| TGAATGCATCTTAGGAGAAA+GGG | 0.514493 | 1.3:+73268421 | None:intergenic |
| AGTGTAAATGTTATTGACTT+TGG | 0.517614 | 1.3:-73270202 | MS.gene91282:CDS |
| TGCATTCTCTGATGTAGTAG+AGG | 0.521881 | 1.3:+73268394 | None:intergenic |
| GCATTCTCTGATGTAGTAGA+GGG | 0.533188 | 1.3:+73268395 | None:intergenic |
| ATCAGCAAATGCTGGGAATG+AGG | 0.548689 | 1.3:-73268363 | MS.gene91282:CDS |
| GGATGATGTCCTTAAGCTCA+GGG | 0.566566 | 1.3:+73268471 | None:intergenic |
| GACGTTGACATTCAAGACCT+TGG | 0.582269 | 1.3:-73270136 | MS.gene91282:CDS |
| ACATCAGAGAATGCAACAGT+TGG | 0.582607 | 1.3:-73268386 | MS.gene91282:CDS |
| CAGTTGGATCAGCAAATGCT+GGG | 0.591873 | 1.3:-73268370 | MS.gene91282:CDS |
| AGGAGCTACGTGAAGTGAAG+AGG | 0.593841 | 1.3:-73269407 | MS.gene91282:CDS |
| TGAATGTCAACGTCCTCGTG+AGG | 0.617337 | 1.3:+73270145 | None:intergenic |
| ATCATCCTATCTGTTGTCCA+CGG | 0.630634 | 1.3:-73268455 | MS.gene91282:CDS |
| AAAGGGTGGCAAGGAGACCG+TGG | 0.634725 | 1.3:+73268438 | None:intergenic |
| TCTTAGGAGAAAGGGTGGCA+AGG | 0.640314 | 1.3:+73268429 | None:intergenic |
| CAGAGATCTTGAGAAGCCGA+AGG | 0.645044 | 1.3:-73270266 | MS.gene91282:CDS |
| CAAAGTTGAAAAGCCTCACG+AGG | 0.665589 | 1.3:-73270158 | MS.gene91282:CDS |
| ATGCATCTTAGGAGAAAGGG+TGG | 0.676044 | 1.3:+73268424 | None:intergenic |
| CTTCGGCAGATATTTGACCA+AGG | 0.705206 | 1.3:+73270119 | None:intergenic |
| TAACATTTACACTGTCACGT+AGG | 0.718366 | 1.3:+73270212 | None:intergenic |
| TGGGAATGAGGATTGTGCTG+AGG | 0.725822 | 1.3:-73268351 | MS.gene91282:CDS |
| GATGATGTCCTTAAGCTCAG+GGG | 0.768594 | 1.3:+73268472 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATACATAGTAATATAAAAT+AGG | + | chr1.3:73270091-73270110 | None:intergenic | 10.0% |
| !!! | GATTTTATAAATAATGATTT+TGG | - | chr1.3:73269581-73269600 | MS.gene91282:intron | 10.0% |
| !! | GCTTTAATAAATCATATAAA+GGG | + | chr1.3:73269676-73269695 | None:intergenic | 15.0% |
| !! | TTAGTGTTTAAATGAATATT+TGG | + | chr1.3:73270011-73270030 | None:intergenic | 15.0% |
| !!! | AGCTTTAATAAATCATATAA+AGG | + | chr1.3:73269677-73269696 | None:intergenic | 15.0% |
| !!! | ATTTTAAGAATTTTATGCAT+TGG | - | chr1.3:73268646-73268665 | MS.gene91282:intron | 15.0% |
| !!! | TTATATTTTGTATTTGTGTA+AGG | - | chr1.3:73269526-73269545 | MS.gene91282:intron | 15.0% |
| !!! | TTTCTCTTATAGTTTTTTTT+AGG | + | chr1.3:73268910-73268929 | None:intergenic | 15.0% |
| !! | AATAAATAGAGTAGATCATA+TGG | - | chr1.3:73268852-73268871 | MS.gene91282:intron | 20.0% |
| !! | ACACAAATACAAAATATAAC+AGG | + | chr1.3:73269525-73269544 | None:intergenic | 20.0% |
| !! | AGATTTATAGATTAATGAGT+TGG | - | chr1.3:73268940-73268959 | MS.gene91282:intron | 20.0% |
| !! | ATAAAATTCTTAAAATGCCA+AGG | + | chr1.3:73268642-73268661 | None:intergenic | 20.0% |
| !! | ATATGATTTATTAAAGCTGA+GGG | - | chr1.3:73269679-73269698 | MS.gene91282:intron | 20.0% |
| !! | TATATGATTTATTAAAGCTG+AGG | - | chr1.3:73269678-73269697 | MS.gene91282:intron | 20.0% |
| !! | TTGTGATAAAAAAAACAGTA+TGG | - | chr1.3:73268976-73268995 | MS.gene91282:intron | 20.0% |
| !!! | TCTATAGTATACCTTTTTTA+TGG | + | chr1.3:73268606-73268625 | None:intergenic | 20.0% |
| ! | AGAAATATATTCTTGAGCTT+CGG | + | chr1.3:73268561-73268580 | None:intergenic | 25.0% |
| ! | AGAAGAAAAGAATGATTTAC+TGG | - | chr1.3:73269311-73269330 | MS.gene91282:intron | 25.0% |
| ! | ATATAGCATATAAAGAAAGC+TGG | + | chr1.3:73269410-73269429 | None:intergenic | 25.0% |
| ! | TATGATTTATTAAAGCTGAG+GGG | - | chr1.3:73269680-73269699 | MS.gene91282:intron | 25.0% |
| ! | TATTTGGATTTGTCACATAT+TGG | + | chr1.3:73269995-73270014 | None:intergenic | 25.0% |
| !! | CAAACAAGAATTTTCACAAA+AGG | + | chr1.3:73269372-73269391 | None:intergenic | 25.0% |
| !! | TTTTTATCACAAGCCATATT+TGG | + | chr1.3:73268968-73268987 | None:intergenic | 25.0% |
| !!! | AGTGTAAATGTTATTGACTT+TGG | - | chr1.3:73268458-73268477 | MS.gene91282:CDS | 25.0% |
| !!! | AGTTATATCAGTGTTTTAGT+CGG | - | chr1.3:73270117-73270136 | MS.gene91282:CDS | 25.0% |
| AAATAGAGTAGATCATATGG+AGG | - | chr1.3:73268855-73268874 | MS.gene91282:intron | 30.0% | |
| AACACCTAAAGTAGAAAAGA+TGG | - | chr1.3:73268774-73268793 | MS.gene91282:intron | 30.0% | |
| AACTACAAGATAACAAACCA+AGG | + | chr1.3:73269471-73269490 | None:intergenic | 30.0% | |
| AATTCTTAAAATGCCAAGGA+AGG | + | chr1.3:73268638-73268657 | None:intergenic | 30.0% | |
| AGAAAACGAGTTCAATGTAA+CGG | + | chr1.3:73269195-73269214 | None:intergenic | 30.0% | |
| ATGTTGCCAACATAAAACTT+TGG | + | chr1.3:73268734-73268753 | None:intergenic | 30.0% | |
| CATTAGCCATTGTTAGTTAT+TGG | - | chr1.3:73268707-73268726 | MS.gene91282:intron | 30.0% | |
| TAAAGAAAGCTGGTTGTAAA+TGG | + | chr1.3:73269400-73269419 | None:intergenic | 30.0% | |
| TATCTGTGCTTATTAACCAT+TGG | - | chr1.3:73269606-73269625 | MS.gene91282:intron | 30.0% | |
| TCGTTTGTCTTCCATAAAAA+AGG | - | chr1.3:73268592-73268611 | MS.gene91282:intron | 30.0% | |
| TTGGAATTTCATCCTAATGA+TGG | + | chr1.3:73269976-73269995 | None:intergenic | 30.0% | |
| TTTGATTGTCACATTTCTCA+TGG | - | chr1.3:73269078-73269097 | MS.gene91282:intron | 30.0% | |
| TTTGGACCAATAACTAACAA+TGG | + | chr1.3:73268716-73268735 | None:intergenic | 30.0% | |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr1.3:73268952-73268971 | MS.gene91282:intron | 30.0% |
| ! | TGTTTCTTTTCCTTCCTTTT+TGG | - | chr1.3:73269220-73269239 | MS.gene91282:intron | 30.0% |
| ! | TTCATCCTAATGATGGAAAA+CGG | + | chr1.3:73269969-73269988 | None:intergenic | 30.0% |
| !! | AATTGCCATGCATTTTAACA+TGG | - | chr1.3:73269430-73269449 | MS.gene91282:intron | 30.0% |
| !! | ATTGGTCCAAAGTTTTATGT+TGG | - | chr1.3:73268725-73268744 | MS.gene91282:intron | 30.0% |
| !! | TAGAAAAGATGGTGGAAAAT+AGG | - | chr1.3:73268785-73268804 | MS.gene91282:intron | 30.0% |
| !!! | GTTATATCAGTGTTTTAGTC+GGG | - | chr1.3:73270118-73270137 | MS.gene91282:CDS | 30.0% |
| AAATCATATAAAGGGCAACC+TGG | + | chr1.3:73269866-73269885 | None:intergenic | 35.0% | |
| AACATTAGAGAGAGAGAACT+GGG | - | chr1.3:73268749-73268768 | MS.gene91282:intron | 35.0% | |
| AACTTAGTACTTTCTGCCTT+CGG | + | chr1.3:73268413-73268432 | None:intergenic | 35.0% | |
| AATCAGATTACAAGAGGTAG+AGG | - | chr1.3:73268880-73268899 | MS.gene91282:intron | 35.0% | |
| ACCTAAAGTAGAAAAGATGG+TGG | - | chr1.3:73268777-73268796 | MS.gene91282:intron | 35.0% | |
| ACGAGGAAAAAAACTACCAA+TGG | + | chr1.3:73269625-73269644 | None:intergenic | 35.0% | |
| ATAATGCGTTGAATTGTGTG+TGG | - | chr1.3:73268673-73268692 | MS.gene91282:intron | 35.0% | |
| CAGTTATCTCAATTGCAGTT+AGG | - | chr1.3:73269166-73269185 | MS.gene91282:intron | 35.0% | |
| CTTCAAATGCAGCAATTTGT+TGG | - | chr1.3:73269288-73269307 | MS.gene91282:intron | 35.0% | |
| GAAACGTGAAATATATCACG+AGG | + | chr1.3:73269642-73269661 | None:intergenic | 35.0% | |
| GAGGATAATCAGATTACAAG+AGG | - | chr1.3:73268874-73268893 | MS.gene91282:intron | 35.0% | |
| TAACATGGTGCAATTCTATC+TGG | - | chr1.3:73269445-73269464 | MS.gene91282:intron | 35.0% | |
| TAACATTTACACTGTCACGT+AGG | + | chr1.3:73268451-73268470 | None:intergenic | 35.0% | |
| TAGAATTGAAGATCCTTCCT+TGG | - | chr1.3:73268622-73268641 | MS.gene91282:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr1.3:73269775-73269794 | MS.gene91282:intron | 35.0% | |
| TGAATGCATCTTAGGAGAAA+GGG | + | chr1.3:73270242-73270261 | None:intergenic | 35.0% | |
| TTGAATGCATCTTAGGAGAA+AGG | + | chr1.3:73270243-73270262 | None:intergenic | 35.0% | |
| TTGCACCATGTTAAAATGCA+TGG | + | chr1.3:73269438-73269457 | None:intergenic | 35.0% | |
| TTGTATTTGTGTAAGGTGTG+TGG | - | chr1.3:73269533-73269552 | MS.gene91282:intron | 35.0% | |
| ! | AAAGTCTTTTCCAACTAAGC+AGG | + | chr1.3:73269918-73269937 | None:intergenic | 35.0% |
| ! | AAGTCTTTTCCAACTAAGCA+GGG | + | chr1.3:73269917-73269936 | None:intergenic | 35.0% |
| ! | ATGGTCTCTAATTTGTCTGT+TGG | - | chr1.3:73269125-73269144 | MS.gene91282:intron | 35.0% |
| ! | TCCACCATCTTTTCTACTTT+AGG | + | chr1.3:73268781-73268800 | None:intergenic | 35.0% |
| ! | TCCTTTTTGGACACTTCTAA+AGG | - | chr1.3:73269233-73269252 | MS.gene91282:intron | 35.0% |
| ! | TGTATCCGTTTTCCATCATT+AGG | - | chr1.3:73269961-73269980 | MS.gene91282:intron | 35.0% |
| !! | TCCTTTAGAAGTGTCCAAAA+AGG | + | chr1.3:73269237-73269256 | None:intergenic | 35.0% |
| !! | TTAGAAGTGTCCAAAAAGGA+AGG | + | chr1.3:73269233-73269252 | None:intergenic | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr1.3:73269776-73269795 | None:intergenic | 35.0% |
| AAAATAGGCTCAGGTGGTTT+GGG | - | chr1.3:73268800-73268819 | MS.gene91282:intron | 40.0% | |
| AAGCTCAGGGGATGTAAATT+CGG | + | chr1.3:73270179-73270198 | None:intergenic | 40.0% | |
| ACAAAAGGCAAAACCTGTTC+AGG | + | chr1.3:73269357-73269376 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr1.3:73269769-73269788 | MS.gene91282:intron | 40.0% | |
| ACATCAGAGAATGCAACAGT+TGG | - | chr1.3:73270274-73270293 | MS.gene91282:CDS | 40.0% | |
| ACATTAGAGAGAGAGAACTG+GGG | - | chr1.3:73268750-73268769 | MS.gene91282:intron | 40.0% | |
| ATCATCCTATCTGTTGTCCA+CGG | - | chr1.3:73270205-73270224 | MS.gene91282:CDS | 40.0% | |
| ATTTACATCCCCTGAGCTTA+AGG | - | chr1.3:73270180-73270199 | MS.gene91282:CDS | 40.0% | |
| CAACATTAGAGAGAGAGAAC+TGG | - | chr1.3:73268748-73268767 | MS.gene91282:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr1.3:73269770-73269789 | MS.gene91282:intron | 40.0% | |
| GCATGTAGAGATAAGACTTG+TGG | - | chr1.3:73268822-73268841 | MS.gene91282:intron | 40.0% | |
| GCATTCTCTGATGTAGTAGA+GGG | + | chr1.3:73270268-73270287 | None:intergenic | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr1.3:73269725-73269744 | MS.gene91282:intron | 40.0% | |
| TATAACCAACCCTGCTTAGT+TGG | - | chr1.3:73269905-73269924 | MS.gene91282:intron | 40.0% | |
| TGCATTCTCTGATGTAGTAG+AGG | + | chr1.3:73270269-73270288 | None:intergenic | 40.0% | |
| !! | GTGACATTATTAGCTTGTGC+AGG | - | chr1.3:73270065-73270084 | MS.gene91282:intron | 40.0% |
| !! | TGCTGAGTATAGGCTTTGTT+TGG | - | chr1.3:73268349-73268368 | MS.gene91282:CDS | 40.0% |
| ACAGTTGGATCAGCAAATGC+TGG | - | chr1.3:73270289-73270308 | MS.gene91282:CDS | 45.0% | |
| AGAGACCATAATCACACCGA+AGG | + | chr1.3:73269114-73269133 | None:intergenic | 45.0% | |
| AGGATGATGTCCTTAAGCTC+AGG | + | chr1.3:73270193-73270212 | None:intergenic | 45.0% | |
| ATCAGCAAATGCTGGGAATG+AGG | - | chr1.3:73270297-73270316 | MS.gene91282:CDS | 45.0% | |
| ATGCATCTTAGGAGAAAGGG+TGG | + | chr1.3:73270239-73270258 | None:intergenic | 45.0% | |
| CAAAGTTGAAAAGCCTCACG+AGG | - | chr1.3:73268502-73268521 | MS.gene91282:intron | 45.0% | |
| CAGTTGGATCAGCAAATGCT+GGG | - | chr1.3:73270290-73270309 | MS.gene91282:CDS | 45.0% | |
| CATAATCACACCGAAGGATG+AGG | + | chr1.3:73269108-73269127 | None:intergenic | 45.0% | |
| CATTGCGCAATGCTGAGTAT+AGG | - | chr1.3:73268339-73268358 | MS.gene91282:CDS | 45.0% | |
| CTTCGGCAGATATTTGACCA+AGG | + | chr1.3:73268544-73268563 | None:intergenic | 45.0% | |
| GAAAATAGGCTCAGGTGGTT+TGG | - | chr1.3:73268799-73268818 | MS.gene91282:intron | 45.0% | |
| GACGTTGACATTCAAGACCT+TGG | - | chr1.3:73268524-73268543 | MS.gene91282:intron | 45.0% | |
| GATGATGTCCTTAAGCTCAG+GGG | + | chr1.3:73270191-73270210 | None:intergenic | 45.0% | |
| GCGTACATACACCAAATGGT+GGG | - | chr1.3:73269800-73269819 | MS.gene91282:intron | 45.0% | |
| GGATGATGTCCTTAAGCTCA+GGG | + | chr1.3:73270192-73270211 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr1.3:73269731-73269750 | MS.gene91282:intron | 45.0% | |
| TCATGGTATGCCTCATCCTT+CGG | - | chr1.3:73269095-73269114 | MS.gene91282:intron | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr1.3:73269732-73269751 | MS.gene91282:intron | 45.0% | |
| TGCGTACATACACCAAATGG+TGG | - | chr1.3:73269799-73269818 | MS.gene91282:intron | 45.0% | |
| TTAAAGCTGAGGGGTAACCT+TGG | - | chr1.3:73269689-73269708 | MS.gene91282:intron | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | + | chr1.3:73269025-73269044 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr1.3:73269026-73269045 | None:intergenic | 45.0% |
| ! | CTCATCCTTCGGTGTGATTA+TGG | - | chr1.3:73269106-73269125 | MS.gene91282:intron | 45.0% |
| ! | CTCGTGAGGCTTTTCAACTT+TGG | + | chr1.3:73268504-73268523 | None:intergenic | 45.0% |
| ! | CTTTTCCAACTAAGCAGGGT+TGG | + | chr1.3:73269913-73269932 | None:intergenic | 45.0% |
| ! | TGTGCATGTTGCTATTGAGC+AGG | - | chr1.3:73270141-73270160 | MS.gene91282:CDS | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr1.3:73269765-73269784 | None:intergenic | 45.0% |
| !! | AGATGGTGGAAAATAGGCTC+AGG | - | chr1.3:73268791-73268810 | MS.gene91282:intron | 45.0% |
| !! | GAGGGCTTTGAATGCATCTT+AGG | + | chr1.3:73270250-73270269 | None:intergenic | 45.0% |
| ACTAAGTGGGGTCGACTACA+AGG | + | chr1.3:73269013-73269032 | None:intergenic | 50.0% | |
| AGGAGCTACGTGAAGTGAAG+AGG | - | chr1.3:73269253-73269272 | MS.gene91282:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr1.3:73269709-73269728 | None:intergenic | 50.0% | |
| CAGAGATCTTGAGAAGCCGA+AGG | - | chr1.3:73268394-73268413 | MS.gene91282:CDS | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr1.3:73269024-73269043 | MS.gene91282:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | - | chr1.3:73269027-73269046 | MS.gene91282:intron | 50.0% | |
| GAGATCGCTTCAACCTGAAC+AGG | - | chr1.3:73269341-73269360 | MS.gene91282:CDS | 50.0% | |
| GGCTGCGTACATACACCAAA+TGG | - | chr1.3:73269796-73269815 | MS.gene91282:intron | 50.0% | |
| GGTGCAATTCTATCTGGCCT+TGG | - | chr1.3:73269451-73269470 | MS.gene91282:intron | 50.0% | |
| TCTTAGGAGAAAGGGTGGCA+AGG | + | chr1.3:73270234-73270253 | None:intergenic | 50.0% | |
| TGAATGTCAACGTCCTCGTG+AGG | + | chr1.3:73268518-73268537 | None:intergenic | 50.0% | |
| TGGGAATGAGGATTGTGCTG+AGG | - | chr1.3:73270309-73270328 | MS.gene91282:CDS | 50.0% | |
| TGGTGGAAAATAGGCTCAGG+TGG | - | chr1.3:73268794-73268813 | MS.gene91282:intron | 50.0% | |
| TGTAGTCGACCCCACTTAGT+GGG | - | chr1.3:73269013-73269032 | MS.gene91282:intron | 50.0% | |
| TTGTAGTCGACCCCACTTAG+TGG | - | chr1.3:73269012-73269031 | MS.gene91282:intron | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr1.3:73269027-73269046 | None:intergenic | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr1.3:73269744-73269763 | MS.gene91282:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr1.3:73269019-73269038 | MS.gene91282:intron | 55.0% | |
| GGAGACCGTGGACAACAGAT+AGG | + | chr1.3:73270213-73270232 | None:intergenic | 55.0% | |
| !! | AGTGGGATAAGGCTTGGTGG+TGG | - | chr1.3:73269030-73269049 | MS.gene91282:intron | 55.0% |
| AAAGGGTGGCAAGGAGACCG+TGG | + | chr1.3:73270225-73270244 | None:intergenic | 60.0% | |
| ACTGAAGCTCCCGCATACGC+AGG | + | chr1.3:73269840-73269859 | None:intergenic | 60.0% | |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr1.3:73269698-73269717 | MS.gene91282:intron | 60.0% | |
| CTGAAGCTCCCGCATACGCA+GGG | + | chr1.3:73269839-73269858 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+CGG | - | chr1.3:73269812-73269831 | MS.gene91282:intron | 60.0% |
| CATACGCAGGGTCCGGGAAG+GGG | + | chr1.3:73269827-73269846 | None:intergenic | 65.0% | |
| CGGGAAGGGGTCCCACCATT+TGG | + | chr1.3:73269814-73269833 | None:intergenic | 65.0% | |
| CTTCCCGGACCCTGCGTATG+CGG | - | chr1.3:73269827-73269846 | MS.gene91282:intron | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | + | chr1.3:73269828-73269847 | None:intergenic | 65.0% | |
| TGCGGGAGCTTCAGTGCACC+AGG | - | chr1.3:73269845-73269864 | MS.gene91282:intron | 65.0% | |
| TTCCCGGACCCTGCGTATGC+GGG | - | chr1.3:73269828-73269847 | MS.gene91282:intron | 65.0% | |
| CGCATACGCAGGGTCCGGGA+AGG | + | chr1.3:73269829-73269848 | None:intergenic | 70.0% | |
| CTCCCGCATACGCAGGGTCC+GGG | + | chr1.3:73269833-73269852 | None:intergenic | 70.0% | |
| GCTCCCGCATACGCAGGGTC+CGG | + | chr1.3:73269834-73269853 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 73268323 | 73270359 | 73268323 | ID=MS.gene91282 |
| chr1.3 | mRNA | 73268323 | 73270359 | 73268323 | ID=MS.gene91282.t1;Parent=MS.gene91282 |
| chr1.3 | exon | 73270069 | 73270359 | 73270069 | ID=MS.gene91282.t1.exon1;Parent=MS.gene91282.t1 |
| chr1.3 | CDS | 73270069 | 73270359 | 73270069 | ID=cds.MS.gene91282.t1;Parent=MS.gene91282.t1 |
| chr1.3 | exon | 73269320 | 73269427 | 73269320 | ID=MS.gene91282.t1.exon2;Parent=MS.gene91282.t1 |
| chr1.3 | CDS | 73269320 | 73269427 | 73269320 | ID=cds.MS.gene91282.t1;Parent=MS.gene91282.t1 |
| chr1.3 | exon | 73268323 | 73268519 | 73268323 | ID=MS.gene91282.t1.exon3;Parent=MS.gene91282.t1 |
| chr1.3 | CDS | 73268323 | 73268519 | 73268323 | ID=cds.MS.gene91282.t1;Parent=MS.gene91282.t1 |
| Gene Sequence |
| Protein sequence |
