AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene27917


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27917.t1 MTR_8g088470 93.456 489 32 0 4 492 5 493 0.0 966
MS.gene27917.t1 MTR_7g033580 81.670 491 89 1 1 491 6 495 0.0 846
MS.gene27917.t1 MTR_7g033570 79.381 485 99 1 7 491 12 495 0.0 816
MS.gene27917.t1 MTR_6g004670 59.711 484 187 4 14 490 23 505 0.0 578
MS.gene27917.t1 MTR_6g004630 57.526 485 197 5 14 491 22 504 0.0 566
MS.gene27917.t1 MTR_1g035670 53.939 495 217 5 5 490 10 502 0.0 564
MS.gene27917.t1 MTR_6g004590 53.770 504 213 6 5 490 14 515 0.0 553
MS.gene27917.t1 MTR_6g004600 53.175 504 216 5 5 490 14 515 0.0 548
MS.gene27917.t1 MTR_1g036130 52.906 499 220 6 5 490 10 506 0.0 548
MS.gene27917.t1 MTR_6g004610 57.173 467 191 4 33 492 1 465 0.0 546
MS.gene27917.t1 MTR_1g035750 53.707 499 215 4 5 490 10 505 0.0 540
MS.gene27917.t1 MTR_1g035760 52.834 494 201 7 5 490 10 479 0.0 539
MS.gene27917.t1 MTR_1g035790 52.621 496 226 4 3 490 8 502 0.0 536
MS.gene27917.t1 MTR_1g036200 51.815 496 225 6 5 490 8 499 0.0 523
MS.gene27917.t1 MTR_1g036010 51.093 503 226 8 5 491 10 508 0.0 521
MS.gene27917.t1 MTR_1g035580 52.390 502 209 8 5 490 9 496 0.0 521
MS.gene27917.t1 MTR_1g035830 51.394 502 226 7 5 491 10 508 0.0 521
MS.gene27917.t1 MTR_1g035800 51.683 505 227 5 3 490 8 512 0.0 519
MS.gene27917.t1 MTR_1g050362 51.292 503 226 7 4 490 7 506 2.85e-180 515
MS.gene27917.t1 MTR_1g036270 50.298 503 232 5 5 490 10 511 4.65e-180 515
MS.gene27917.t1 MTR_1g035940 48.902 501 240 6 5 491 10 508 6.15e-174 499
MS.gene27917.t1 MTR_1g035860 49.087 438 212 5 4 432 15 450 3.44e-153 446
MS.gene27917.t1 MTR_1g069715 51.589 409 180 7 78 471 1 406 2.50e-145 432
MS.gene27917.t1 MTR_1g037560 40.246 487 277 4 18 490 57 543 4.48e-132 394
MS.gene27917.t1 MTR_1g037550 39.676 494 280 4 15 490 54 547 8.61e-132 393
MS.gene27917.t1 MTR_4g075110 38.922 501 291 5 4 490 50 549 4.17e-131 392
MS.gene27917.t1 MTR_4g012320 78.761 226 47 1 267 492 1 225 8.41e-129 373
MS.gene27917.t1 MTR_8g030590 40.625 480 270 8 28 492 33 512 1.77e-117 356
MS.gene27917.t1 MTR_5g070010 39.167 480 274 7 28 492 34 510 1.12e-112 343
MS.gene27917.t1 MTR_8g098435 38.542 480 275 8 28 492 33 507 4.00e-110 336
MS.gene27917.t1 MTR_3g463060 38.806 469 264 7 29 485 40 497 7.58e-107 328
MS.gene27917.t1 MTR_3g080580 35.020 494 298 10 14 490 30 517 2.43e-92 291
MS.gene27917.t1 MTR_4g119660 34.095 525 303 13 1 491 1 516 1.34e-88 281
MS.gene27917.t1 MTR_7g088330 35.236 508 294 15 4 490 15 508 9.31e-88 278
MS.gene27917.t1 MTR_5g019140 34.034 523 303 13 2 491 18 531 1.04e-87 279
MS.gene27917.t1 MTR_7g029275 33.595 509 299 12 4 490 17 508 7.44e-86 273
MS.gene27917.t1 MTR_1g070365 34.631 488 289 12 18 490 32 504 1.05e-85 273
MS.gene27917.t1 MTR_1g060550 36.069 463 271 11 39 490 64 512 4.22e-85 271
MS.gene27917.t1 MTR_7g096320 33.753 477 286 11 28 490 43 503 3.27e-83 266
MS.gene27917.t1 MTR_7g096340 33.800 429 263 8 72 490 85 502 2.89e-82 264
MS.gene27917.t1 MTR_4g054920 34.690 467 272 11 43 491 66 517 1.81e-81 262
MS.gene27917.t1 MTR_1g070345 33.197 488 290 14 22 491 36 505 1.74e-80 259
MS.gene27917.t1 MTR_8g035860 32.075 477 302 10 29 491 42 510 5.98e-80 258
MS.gene27917.t1 MTR_8g035820 32.420 438 278 9 68 491 77 510 5.86e-77 250
MS.gene27917.t1 MTR_2g086040 32.403 466 289 11 28 487 50 495 5.57e-76 247
MS.gene27917.t1 MTR_8g035810 31.797 434 278 9 72 491 82 511 8.41e-76 247
MS.gene27917.t1 MTR_1g102220 31.724 435 281 9 68 491 78 507 4.38e-75 245
MS.gene27917.t1 MTR_8g035780 32.102 433 276 9 72 490 82 510 5.79e-75 245
MS.gene27917.t1 MTR_7g406990 36.752 351 211 5 25 365 47 396 4.89e-74 241
MS.gene27917.t1 MTR_8g035680 29.375 480 307 13 29 491 49 513 1.33e-69 231
MS.gene27917.t1 MTR_8g035760 29.079 478 308 12 29 490 49 511 1.20e-67 226
MS.gene27917.t1 MTR_8g035810 31.551 374 239 8 72 432 82 451 5.72e-62 209
MS.gene27917.t1 MTR_8g035680 29.155 367 238 9 139 491 8 366 5.47e-55 188
MS.gene27917.t1 MTR_1g102210 27.731 357 222 7 144 491 33 362 6.56e-46 164
MS.gene27917.t1 MTR_1g070370 35.458 251 144 5 163 408 5 242 5.34e-45 158
MS.gene27917.t1 MTR_6g084040 44.186 172 77 2 7 177 12 165 4.10e-42 148
MS.gene27917.t1 MTR_8g035810 30.164 305 197 7 72 363 82 383 5.52e-42 154
MS.gene27917.t1 MTR_5g009110 26.695 472 279 16 72 492 117 572 3.69e-38 147
MS.gene27917.t1 MTR_7g079440 29.345 443 267 19 70 490 230 648 6.25e-36 142
MS.gene27917.t1 MTR_5g009110 26.757 441 254 16 104 492 1 424 3.89e-35 136
MS.gene27917.t1 MTR_1g062190 25.682 440 288 15 70 490 120 539 2.27e-28 118
MS.gene27917.t1 MTR_7g079440 30.387 362 212 15 70 413 230 569 2.30e-27 115
MS.gene27917.t1 MTR_2g062670 36.957 184 110 3 158 340 63 241 6.16e-26 110
MS.gene27917.t1 MTR_5g009110 28.614 332 197 12 72 379 117 432 2.34e-25 108
MS.gene27917.t1 MTR_1g040110 44.444 117 62 1 114 227 51 167 3.53e-25 102
MS.gene27917.t1 MTR_5g009110 28.094 299 177 10 104 379 1 284 2.71e-22 97.8
MS.gene27917.t1 MTR_1g101040 28.125 256 170 6 238 488 267 513 3.52e-22 99.8
MS.gene27917.t1 MTR_2g010250 26.174 298 197 7 209 490 215 505 1.64e-21 97.8
MS.gene27917.t1 MTR_1g050590 40.000 120 65 3 239 353 1 118 1.67e-21 90.1
MS.gene27917.t1 MTR_6g072490 27.344 256 172 6 238 488 265 511 1.81e-21 97.8
MS.gene27917.t1 MTR_3g093530 24.946 465 305 16 45 489 83 523 5.13e-21 96.3
MS.gene27917.t1 MTR_1g101050 26.953 256 173 6 238 488 263 509 7.21e-21 95.9
MS.gene27917.t1 MTR_8g046580 45.161 93 50 1 373 465 201 292 1.16e-20 92.8
MS.gene27917.t1 MTR_2g072270 21.868 439 308 13 58 485 104 518 1.24e-20 95.1
MS.gene27917.t1 MTR_8g104030 27.419 248 147 8 228 456 8 241 1.37e-20 92.4
MS.gene27917.t1 MTR_8g042000 23.291 468 307 13 42 489 88 523 2.33e-20 94.4
MS.gene27917.t1 MTR_8g098565 30.097 206 138 4 290 490 302 506 2.47e-20 94.4
MS.gene27917.t1 MTR_6g008500 26.398 322 203 11 160 461 194 501 3.12e-20 94.0
MS.gene27917.t1 MTR_0147s0030 23.750 480 298 18 41 489 88 530 4.91e-20 93.6
MS.gene27917.t1 MTR_6g017325 24.615 390 262 13 104 485 137 502 7.43e-20 92.8
MS.gene27917.t1 MTR_2g010290 29.327 208 135 5 290 490 330 532 8.87e-20 92.8
MS.gene27917.t1 MTR_7g006900 22.277 404 260 14 104 488 102 470 2.04e-19 91.3
MS.gene27917.t1 MTR_6g008530 28.085 235 148 8 238 461 271 495 2.06e-19 91.7
MS.gene27917.t1 MTR_8g012585 25.735 272 188 7 227 490 184 449 2.98e-19 90.5
MS.gene27917.t1 MTR_8g008530 26.415 265 155 8 246 489 273 518 3.91e-19 90.5
MS.gene27917.t1 MTR_5g070920 28.061 196 131 4 260 451 270 459 4.10e-19 90.5
MS.gene27917.t1 MTR_8g104100 28.125 224 133 7 247 456 13 222 4.60e-19 87.4
MS.gene27917.t1 MTR_4g104610 24.786 351 208 10 139 462 142 463 6.08e-19 90.1
MS.gene27917.t1 MTR_5g070710 25.856 263 175 8 231 485 238 488 1.02e-18 89.4
MS.gene27917.t1 MTR_5g070830 28.571 196 130 3 260 451 381 570 1.67e-18 89.0
MS.gene27917.t1 MTR_0025s0110 22.198 464 315 16 42 488 90 524 2.05e-18 88.6
MS.gene27917.t1 MTR_2g010330 27.523 218 150 4 280 490 291 507 2.09e-18 88.2
MS.gene27917.t1 MTR_2g010380 23.636 275 201 5 222 490 238 509 2.94e-18 87.8
MS.gene27917.t1 MTR_5g034900 28.311 219 147 5 277 490 304 517 3.21e-18 87.8
MS.gene27917.t1 MTR_6g004570 47.170 106 39 2 234 322 2 107 3.24e-18 84.7
MS.gene27917.t1 MTR_5g070690 26.961 204 133 4 260 456 269 463 3.24e-18 87.8
MS.gene27917.t1 MTR_5g070800 26.961 204 133 4 260 456 269 463 3.24e-18 87.8
MS.gene27917.t1 MTR_4g113650 23.362 458 315 13 39 485 82 514 3.39e-18 87.8
MS.gene27917.t1 MTR_2g072400 23.404 470 308 17 39 489 79 515 4.94e-18 87.0
MS.gene27917.t1 MTR_5g095230 22.864 433 267 14 87 489 118 513 7.02e-18 86.7
MS.gene27917.t1 MTR_7g055793 22.658 459 298 15 53 489 45 468 1.18e-17 85.9
MS.gene27917.t1 MTR_6g008600 29.167 216 135 9 238 445 270 475 1.23e-17 85.9
MS.gene27917.t1 MTR_1g085680 22.174 460 293 15 56 488 93 514 1.24e-17 85.9
MS.gene27917.t1 MTR_4g062510 28.962 183 110 6 282 456 307 477 1.45e-17 85.9
MS.gene27917.t1 MTR_2g023680 22.760 413 270 12 99 489 132 517 1.49e-17 85.9
MS.gene27917.t1 MTR_7g087520 26.690 281 171 11 204 458 205 476 1.54e-17 85.9
MS.gene27917.t1 MTR_6g008620 26.957 230 144 7 223 438 249 468 1.60e-17 85.9
MS.gene27917.t1 MTR_7g055793 22.658 459 298 15 53 489 100 523 1.61e-17 85.5
MS.gene27917.t1 MTR_7g079440 30.258 271 157 12 70 322 230 486 1.67e-17 85.5
MS.gene27917.t1 MTR_1g015860 29.864 221 145 5 274 491 316 529 1.83e-17 85.5
MS.gene27917.t1 MTR_7g012860 28.085 235 150 7 230 458 241 462 1.85e-17 85.5
MS.gene27917.t1 MTR_0287s0060 28.085 235 150 7 230 458 241 462 1.85e-17 85.5
MS.gene27917.t1 MTR_6g008430 28.571 231 148 7 223 445 245 466 2.01e-17 85.5
MS.gene27917.t1 MTR_6g042540 26.154 260 160 8 228 469 247 492 2.18e-17 85.1
MS.gene27917.t1 MTR_6g042610 29.130 230 142 9 228 445 247 467 2.66e-17 85.1
MS.gene27917.t1 MTR_1g022040 26.131 398 243 16 105 485 135 498 3.08e-17 84.7
MS.gene27917.t1 MTR_8g042020 21.656 471 310 12 42 489 88 522 3.49e-17 84.7
MS.gene27917.t1 MTR_3g014880 24.823 282 192 7 223 490 248 523 4.24e-17 84.3
MS.gene27917.t1 MTR_8g063280 26.106 226 153 5 244 459 243 464 4.93e-17 84.0
MS.gene27917.t1 MTR_2g010320 23.509 285 211 5 212 490 220 503 5.99e-17 84.0
MS.gene27917.t1 MTR_1g091003 29.327 208 131 6 239 444 251 444 7.68e-17 83.6
MS.gene27917.t1 MTR_6g084770 27.083 240 158 6 228 456 233 466 7.79e-17 83.6
MS.gene27917.t1 MTR_4g104570 33.333 156 89 4 289 440 1 145 8.45e-17 79.3
MS.gene27917.t1 MTR_4g104540 32.143 168 99 4 277 440 220 376 8.64e-17 82.8
MS.gene27917.t1 MTR_2g061200 22.294 462 290 15 59 489 105 528 9.03e-17 83.2
MS.gene27917.t1 MTR_1g069200 25.000 256 179 5 238 488 263 510 1.08e-16 83.2
MS.gene27917.t1 MTR_8g027040 24.046 262 187 7 234 490 291 545 1.32e-16 82.8
MS.gene27917.t1 MTR_8g042060 27.094 203 130 4 292 489 298 487 1.99e-16 82.0
MS.gene27917.t1 MTR_8g042060 27.094 203 130 4 292 489 334 523 2.10e-16 82.0
MS.gene27917.t1 MTR_1g107300 29.341 167 101 4 295 456 9 163 2.63e-16 78.2
MS.gene27917.t1 MTR_6g008650 26.154 260 175 8 221 469 246 499 2.77e-16 82.0
MS.gene27917.t1 MTR_1g107295 27.778 180 113 4 282 456 308 475 4.52e-16 81.3
MS.gene27917.t1 MTR_1g031700 25.781 256 173 7 217 466 223 467 4.55e-16 80.9
MS.gene27917.t1 MTR_8g035790 38.776 98 58 2 394 490 1 97 5.10e-16 73.9
MS.gene27917.t1 MTR_2g010280 27.451 204 144 3 290 490 301 503 5.57e-16 80.9
MS.gene27917.t1 MTR_7g098550 23.182 440 290 13 56 485 91 492 5.59e-16 80.9
MS.gene27917.t1 MTR_2g072340 28.500 200 131 5 292 489 326 515 6.51e-16 80.5
MS.gene27917.t1 MTR_2g010300 25.980 204 133 4 290 490 301 489 7.36e-16 80.5
MS.gene27917.t1 MTR_6g084900 25.116 215 150 4 247 456 20 228 7.50e-16 78.2
MS.gene27917.t1 MTR_2g072380 28.500 200 131 5 292 489 161 350 7.83e-16 79.3
MS.gene27917.t1 MTR_3g104560 28.112 249 168 6 247 491 161 402 8.08e-16 79.7
MS.gene27917.t1 MTR_8g469360 24.594 431 281 15 76 489 20 423 9.27e-16 79.7
MS.gene27917.t1 MTR_7g103450 26.829 246 168 7 215 456 241 478 9.40e-16 80.1
MS.gene27917.t1 MTR_3g104560 28.112 249 168 6 247 491 296 537 9.91e-16 80.1
MS.gene27917.t1 MTR_2g072250 28.000 200 132 4 292 489 324 513 1.10e-15 80.1
MS.gene27917.t1 MTR_2g055430 28.000 200 132 5 292 489 328 517 1.11e-15 80.1
MS.gene27917.t1 MTR_5g470730 27.950 161 107 3 260 416 271 426 1.18e-15 79.3
MS.gene27917.t1 MTR_2g072380 28.500 200 131 5 292 489 301 490 1.31e-15 79.7
MS.gene27917.t1 MTR_1g036140 39.362 94 53 1 243 332 69 162 1.50e-15 74.7
MS.gene27917.t1 MTR_1g036140 55.000 60 24 2 5 62 10 68 6.37e-14 70.1
MS.gene27917.t1 MTR_0171s0030 26.255 259 171 9 217 463 138 388 1.69e-15 79.0
MS.gene27917.t1 MTR_4g094775 28.194 227 146 6 231 457 245 454 2.26e-15 79.0
MS.gene27917.t1 MTR_0171s0020 23.662 355 241 13 106 445 119 458 3.27e-15 78.6
MS.gene27917.t1 MTR_2g055470 28.000 200 132 5 292 489 328 517 3.57e-15 78.2
MS.gene27917.t1 MTR_7g012330 26.937 271 157 9 200 466 237 470 3.57e-15 78.2
MS.gene27917.t1 MTR_5g070700 26.341 205 137 5 253 451 264 460 3.99e-15 78.2
MS.gene27917.t1 MTR_1g091023 27.885 208 134 6 239 444 251 444 4.02e-15 78.2
MS.gene27917.t1 MTR_2g072310 27.500 200 133 5 292 489 161 350 4.03e-15 77.0
MS.gene27917.t1 MTR_4g088160 23.881 268 173 9 217 463 217 474 4.14e-15 78.2
MS.gene27917.t1 MTR_8g012590 23.396 265 180 8 231 489 240 487 4.19e-15 78.2
MS.gene27917.t1 MTR_8g076290 25.234 214 139 8 240 440 245 450 4.79e-15 77.8
MS.gene27917.t1 MTR_1g091010 27.885 208 134 6 239 444 250 443 4.81e-15 77.8
MS.gene27917.t1 MTR_4g088195 24.074 270 178 9 217 467 217 478 4.85e-15 77.8
MS.gene27917.t1 MTR_5g070850 23.288 365 252 11 105 458 119 466 4.90e-15 77.8
MS.gene27917.t1 MTR_1g103670 25.217 230 156 6 217 440 223 442 5.17e-15 77.8
MS.gene27917.t1 MTR_7g098550 22.870 446 292 14 56 485 91 500 5.29e-15 77.8
MS.gene27917.t1 MTR_5g007460 24.887 221 159 3 239 459 227 440 6.14e-15 77.4
MS.gene27917.t1 MTR_4g088170 23.897 272 178 9 217 467 217 480 7.12e-15 77.4
MS.gene27917.t1 MTR_2g031930 24.330 448 288 20 28 462 52 461 8.77e-15 77.0
MS.gene27917.t1 MTR_4g095050 23.264 288 206 6 160 444 171 446 1.01e-14 77.0
MS.gene27917.t1 MTR_8g036185 29.348 184 107 6 287 458 308 480 1.06e-14 77.0
MS.gene27917.t1 MTR_5g007450 27.027 222 147 6 239 459 254 461 1.45e-14 76.3
MS.gene27917.t1 MTR_2g073480 26.794 209 142 4 239 445 164 363 1.55e-14 75.9
MS.gene27917.t1 MTR_2g031930 24.439 446 286 20 28 460 48 455 1.69e-14 75.9
MS.gene27917.t1 MTR_2g073440 26.794 209 142 4 239 445 231 430 1.73e-14 75.9
MS.gene27917.t1 MTR_2g061750 27.368 190 113 7 69 239 12 195 2.08e-14 72.4
MS.gene27917.t1 MTR_2g061740 27.368 190 113 7 69 239 12 195 2.10e-14 72.4
MS.gene27917.t1 MTR_8g042040 26.738 187 119 4 308 489 333 506 2.11e-14 75.9
MS.gene27917.t1 MTR_4g077210 25.333 225 157 5 223 444 235 451 2.47e-14 75.9
MS.gene27917.t1 MTR_6g022450 25.472 212 143 5 279 489 301 498 2.51e-14 75.9
MS.gene27917.t1 MTR_7g075610 28.261 184 117 4 287 466 302 474 3.21e-14 75.5
MS.gene27917.t1 MTR_5g073020 26.000 250 164 8 227 466 235 473 3.22e-14 75.5
MS.gene27917.t1 MTR_4g088400 27.843 255 166 9 223 469 250 494 3.69e-14 75.1
MS.gene27917.t1 MTR_5g056720 26.792 265 153 11 233 485 185 420 4.35e-14 74.7
MS.gene27917.t1 MTR_5g073250 26.442 208 138 5 251 453 263 460 4.43e-14 74.7
MS.gene27917.t1 MTR_5g016410 24.390 287 201 8 161 444 169 442 5.99e-14 74.3
MS.gene27917.t1 MTR_6g008640 26.042 192 135 4 279 469 312 497 6.65e-14 74.3
MS.gene27917.t1 MTR_4g104550 30.723 166 104 4 277 440 281 437 7.60e-14 73.9
MS.gene27917.t1 MTR_2g072260 26.000 200 136 4 292 489 321 510 9.65e-14 73.9
MS.gene27917.t1 MTR_4g078110 28.125 192 126 5 252 440 240 422 1.26e-13 73.2
MS.gene27917.t1 MTR_5g007550 25.676 222 150 6 239 459 254 461 1.29e-13 73.6
MS.gene27917.t1 MTR_0171s0010 26.496 234 156 9 219 445 236 460 1.47e-13 73.2
MS.gene27917.t1 MTR_0638s0020 23.734 316 216 8 151 456 90 390 1.57e-13 72.8
MS.gene27917.t1 MTR_4g035330 23.711 291 201 7 155 445 162 431 1.67e-13 73.2
MS.gene27917.t1 MTR_3g436540 25.194 258 169 8 238 490 259 497 2.04e-13 72.8
MS.gene27917.t1 MTR_5g073320 25.103 243 163 8 220 453 229 461 2.30e-13 72.8
MS.gene27917.t1 MTR_2g073420 24.889 225 157 5 237 459 257 471 2.54e-13 72.4
MS.gene27917.t1 MTR_4g025980 28.151 238 156 7 228 459 232 460 2.55e-13 72.4
MS.gene27917.t1 MTR_2g437840 25.000 320 208 13 137 446 152 449 3.29e-13 72.0
MS.gene27917.t1 MTR_8g076510 22.103 466 270 16 28 460 46 451 3.70e-13 72.0
MS.gene27917.t1 MTR_4g089030 28.659 164 110 3 277 440 306 462 4.61e-13 71.6
MS.gene27917.t1 MTR_1g031710 27.381 168 114 4 248 414 67 227 5.15e-13 70.1
MS.gene27917.t1 MTR_4g071710 26.126 222 135 9 252 456 265 474 5.41e-13 71.6
MS.gene27917.t1 MTR_2g450040 27.236 246 158 10 224 458 243 478 5.68e-13 71.6
MS.gene27917.t1 MTR_5g026520 24.664 223 156 5 273 490 293 508 7.25e-13 71.2
MS.gene27917.t1 MTR_5g095290 28.279 244 151 9 222 453 229 460 8.20e-13 70.9
MS.gene27917.t1 MTR_4g088405 27.686 242 147 7 235 469 188 408 1.15e-12 70.1
MS.gene27917.t1 MTR_1g037370 25.824 182 123 5 261 440 268 439 1.60e-12 70.1
MS.gene27917.t1 MTR_1g035140 27.928 222 141 10 245 460 255 463 1.70e-12 70.1
MS.gene27917.t1 MTR_8g077810 22.095 525 315 19 1 488 11 478 1.79e-12 69.7
MS.gene27917.t1 MTR_5g094550 26.496 234 151 9 220 445 228 448 2.45e-12 69.3
MS.gene27917.t1 MTR_3g436390 27.434 226 146 9 231 451 246 458 2.85e-12 69.3
MS.gene27917.t1 MTR_3g076550 25.506 247 152 6 241 483 254 472 3.44e-12 68.9
MS.gene27917.t1 MTR_3g057860 25.283 265 182 7 230 485 240 497 3.91e-12 68.9
MS.gene27917.t1 MTR_4g031820 22.955 440 287 18 65 482 111 520 4.08e-12 68.9
MS.gene27917.t1 MTR_6g035115 31.638 177 103 6 288 459 297 460 4.72e-12 68.6
MS.gene27917.t1 MTR_6g034940 25.778 225 148 7 233 448 226 440 5.12e-12 68.2
MS.gene27917.t1 MTR_2g065360 22.188 329 231 8 138 456 120 433 6.10e-12 68.2
MS.gene27917.t1 MTR_5g095260 28.395 243 153 8 222 453 229 461 6.53e-12 68.2
MS.gene27917.t1 MTR_7g075540 22.946 353 220 16 138 466 147 471 7.07e-12 67.8
MS.gene27917.t1 MTR_3g058220 26.971 241 140 12 238 460 242 464 8.73e-12 67.8
MS.gene27917.t1 MTR_7g056103 22.273 220 156 6 245 456 257 469 9.67e-12 67.4
MS.gene27917.t1 MTR_7g028020 23.307 502 316 19 1 464 1 471 9.77e-12 67.4
MS.gene27917.t1 MTR_0451s0010 23.899 318 195 11 148 460 9 284 1.50e-11 65.9
MS.gene27917.t1 MTR_4g094772 28.141 199 127 7 242 440 247 429 1.57e-11 67.0
MS.gene27917.t1 MTR_5g070840 32.143 112 71 2 342 451 23 131 1.92e-11 63.2
MS.gene27917.t1 MTR_8g020940 24.569 232 153 8 232 458 252 466 2.13e-11 66.6
MS.gene27917.t1 MTR_4g088425 27.344 256 167 11 223 469 233 478 2.96e-11 65.9
MS.gene27917.t1 MTR_3g467200 26.633 199 135 6 247 440 281 473 3.00e-11 66.2
MS.gene27917.t1 MTR_5g070973 28.676 136 90 3 317 451 2 131 3.95e-11 62.4
MS.gene27917.t1 MTR_8g012970 25.833 240 167 5 238 476 244 473 5.16e-11 65.1
MS.gene27917.t1 MTR_3g467220 27.128 188 126 6 256 438 285 466 6.00e-11 65.1
MS.gene27917.t1 MTR_1g090987 30.935 139 84 5 308 444 4 132 6.51e-11 61.6
MS.gene27917.t1 MTR_2g072420 28.058 139 92 3 354 489 7 140 9.07e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene27917.t1 AT2G23180 45.187 509 254 5 4 491 9 513 2.33e-160 465
MS.gene27917.t1 AT4G39490 44.291 508 262 5 4 490 9 516 6.31e-158 459
MS.gene27917.t1 AT4G39480 46.204 461 233 3 45 490 53 513 7.86e-149 435
MS.gene27917.t1 AT4G32170 43.083 506 260 7 3 490 8 503 4.72e-147 431
MS.gene27917.t1 AT2G21910 45.397 478 244 6 28 492 35 508 2.51e-146 429
MS.gene27917.t1 AT1G65340 44.148 487 247 5 19 489 25 502 1.41e-145 427
MS.gene27917.t1 AT4G39500 42.490 506 260 6 6 490 21 516 3.39e-143 421
MS.gene27917.t1 AT1G57750 41.851 497 268 5 4 490 11 496 1.14e-142 419
MS.gene27917.t1 AT4G39510 41.235 502 273 3 4 490 11 505 1.13e-141 417
MS.gene27917.t1 AT5G52320 42.887 485 255 4 19 489 25 501 6.44e-141 415
MS.gene27917.t1 AT1G47620 43.158 475 255 5 28 490 44 515 1.41e-139 412
MS.gene27917.t1 AT5G52320 42.708 480 253 4 19 484 25 496 3.32e-139 410
MS.gene27917.t1 AT4G39500 43.524 471 248 4 33 490 1 466 4.75e-139 409
MS.gene27917.t1 AT5G02900 41.235 502 245 10 6 490 11 479 2.01e-128 382
MS.gene27917.t1 AT5G23190 39.243 502 290 6 4 491 41 541 2.17e-128 385
MS.gene27917.t1 AT5G08250 38.933 506 287 8 3 491 41 541 5.66e-127 380
MS.gene27917.t1 AT5G08250 39.917 481 267 8 28 491 4 479 7.21e-124 370
MS.gene27917.t1 AT1G63710 38.067 507 291 10 4 492 8 509 6.52e-114 346
MS.gene27917.t1 AT3G26125 37.576 495 283 8 20 491 42 533 1.44e-113 346
MS.gene27917.t1 AT1G24540 36.275 510 303 9 1 492 17 522 2.55e-112 342
MS.gene27917.t1 AT5G58860 37.228 505 290 7 6 491 13 509 4.67e-110 336
MS.gene27917.t1 AT2G45970 38.017 484 277 8 28 492 33 512 1.12e-109 336
MS.gene27917.t1 AT1G57750 39.529 425 236 5 4 418 11 424 1.76e-108 329
MS.gene27917.t1 AT4G00360 36.576 514 301 9 1 492 3 513 2.78e-108 333
MS.gene27917.t1 AT1G01600 36.842 513 293 11 8 492 6 515 4.50e-108 332
MS.gene27917.t1 AT1G13140 34.331 501 313 6 5 491 27 525 9.80e-106 325
MS.gene27917.t1 AT1G13150 35.802 486 296 8 20 491 35 518 2.59e-104 322
MS.gene27917.t1 AT1G13140 34.756 492 297 5 5 491 27 499 3.16e-103 318
MS.gene27917.t1 AT3G56630 37.263 475 278 12 28 491 34 499 1.28e-90 285
MS.gene27917.t1 AT1G34540 35.745 470 291 9 28 491 34 498 2.81e-88 279
MS.gene27917.t1 AT2G27690 35.011 457 277 8 43 491 51 495 6.12e-87 276
MS.gene27917.t1 AT1G69500 33.333 528 302 13 4 491 7 524 6.38e-86 274
MS.gene27917.t1 AT3G48520 33.891 478 286 10 28 491 39 500 3.83e-83 266
MS.gene27917.t1 AT5G63450 34.161 483 281 12 26 490 39 502 2.38e-80 259
MS.gene27917.t1 AT5G63450 34.161 483 281 12 26 490 97 560 1.18e-79 259
MS.gene27917.t1 AT2G44890 31.474 502 321 12 4 491 17 509 1.66e-77 251
MS.gene27917.t1 AT3G01900 32.505 483 293 13 21 490 28 490 4.12e-76 248
MS.gene27917.t1 AT2G44890 30.785 497 313 11 4 491 17 491 2.31e-74 243
MS.gene27917.t1 AT2G45510 32.488 434 274 10 72 491 81 509 2.61e-72 238
MS.gene27917.t1 AT1G31800 26.591 440 285 15 70 491 151 570 2.52e-35 139
MS.gene27917.t1 AT4G15110 24.736 473 286 16 72 491 124 579 8.68e-31 126
MS.gene27917.t1 AT3G53130 26.304 441 284 17 70 490 120 539 9.09e-29 119
MS.gene27917.t1 AT5G51900 40.441 136 60 2 209 326 1 133 2.51e-23 99.0
MS.gene27917.t1 AT2G26710 23.769 467 305 15 39 489 83 514 2.38e-22 100
MS.gene27917.t1 AT5G24900 23.629 474 302 18 45 487 80 524 1.29e-21 98.2
MS.gene27917.t1 AT5G24900 24.074 432 278 16 80 487 2 407 6.14e-21 95.1
MS.gene27917.t1 AT4G27710 25.268 467 297 19 37 485 80 512 1.42e-20 95.1
MS.gene27917.t1 AT5G52400 29.694 229 149 5 261 488 300 517 2.48e-20 94.4
MS.gene27917.t1 AT3G61040 27.700 213 146 5 248 459 255 460 7.23e-20 92.8
MS.gene27917.t1 AT1G66030 35.156 128 75 2 28 154 43 163 5.69e-19 84.7
MS.gene27917.t1 AT2G46950 23.543 446 299 16 54 485 148 565 5.86e-19 90.5
MS.gene27917.t1 AT5G24910 22.642 477 310 17 45 490 84 532 7.12e-19 90.1
MS.gene27917.t1 AT3G14640 23.696 460 296 17 51 489 110 535 1.39e-18 89.0
MS.gene27917.t1 AT3G14640 23.696 460 296 17 51 489 88 513 1.40e-18 89.0
MS.gene27917.t1 AT3G14680 22.747 466 291 15 51 489 88 511 1.71e-18 88.6
MS.gene27917.t1 AT3G48300 28.000 300 198 11 162 458 164 448 3.54e-18 87.4
MS.gene27917.t1 AT3G48300 28.000 300 198 11 162 458 166 450 3.57e-18 87.4
MS.gene27917.t1 AT4G37340 24.390 287 198 7 161 444 170 440 5.37e-18 87.0
MS.gene27917.t1 AT3G14650 23.028 469 294 16 47 489 84 511 6.46e-18 87.0
MS.gene27917.t1 AT3G25180 25.296 253 175 7 224 469 238 483 7.26e-18 86.7
MS.gene27917.t1 AT1G64940 23.954 263 180 7 238 491 259 510 1.27e-17 85.9
MS.gene27917.t1 AT4G13290 28.328 293 181 9 155 440 165 435 1.78e-17 85.5
MS.gene27917.t1 AT1G01190 28.986 207 130 7 293 490 338 536 3.47e-17 84.7
MS.gene27917.t1 AT1G01190 28.986 207 130 7 293 490 333 531 3.48e-17 84.7
MS.gene27917.t1 AT5G06900 25.591 254 167 9 218 463 226 465 7.71e-17 83.6
MS.gene27917.t1 AT3G20940 27.799 259 159 10 247 491 266 510 9.92e-17 83.2
MS.gene27917.t1 AT4G13310 27.389 314 202 10 137 440 145 442 1.04e-16 83.2
MS.gene27917.t1 AT4G37370 26.846 298 178 10 160 444 169 439 2.34e-16 82.0
MS.gene27917.t1 AT5G07990 26.446 242 159 8 227 459 235 466 2.79e-16 81.6
MS.gene27917.t1 AT3G48270 29.775 178 116 4 282 458 281 450 3.53e-16 81.3
MS.gene27917.t1 AT2G27000 22.946 353 248 11 151 491 167 507 4.68e-16 81.3
MS.gene27917.t1 AT1G01280 22.535 426 273 17 66 460 71 470 5.43e-16 80.9
MS.gene27917.t1 AT4G37410 24.332 337 226 10 126 455 135 449 6.05e-16 80.9
MS.gene27917.t1 AT3G14690 25.373 268 176 8 231 489 259 511 6.08e-16 80.9
MS.gene27917.t1 AT3G14660 21.319 455 319 14 47 489 84 511 6.08e-16 80.9
MS.gene27917.t1 AT3G14690 25.373 268 176 8 231 489 294 546 6.58e-16 80.9
MS.gene27917.t1 AT3G14660 25.373 268 176 7 231 489 113 365 8.27e-16 79.3
MS.gene27917.t1 AT4G15350 26.639 244 162 9 258 492 269 504 8.53e-16 80.5
MS.gene27917.t1 AT3G20935 27.907 301 180 13 211 492 54 336 1.11e-15 79.0
MS.gene27917.t1 AT2G46960 22.126 461 301 15 52 488 89 515 1.23e-15 79.7
MS.gene27917.t1 AT3G14610 26.616 263 166 8 231 482 258 504 1.26e-15 79.7
MS.gene27917.t1 AT1G64950 24.790 238 169 5 257 491 279 509 1.62e-15 79.3
MS.gene27917.t1 AT1G13080 23.810 378 253 12 106 466 113 472 2.11e-15 79.0
MS.gene27917.t1 AT1G13080 23.249 357 250 11 120 466 12 354 2.67e-15 78.2
MS.gene27917.t1 AT1G16410 21.557 501 330 15 28 490 52 527 3.60e-15 78.6
MS.gene27917.t1 AT2G14100 24.595 309 214 10 158 460 177 472 3.79e-15 78.2
MS.gene27917.t1 AT2G24180 24.648 284 201 7 215 492 227 503 5.58e-15 77.8
MS.gene27917.t1 AT4G37330 27.826 230 152 6 215 444 222 437 8.58e-15 77.0
MS.gene27917.t1 AT4G13770 26.776 183 124 3 287 466 295 470 8.99e-15 77.0
MS.gene27917.t1 AT4G31950 25.095 263 169 10 224 469 231 482 1.05e-14 77.0
MS.gene27917.t1 AT2G45580 23.200 250 158 9 216 459 97 318 1.41e-14 75.5
MS.gene27917.t1 AT5G35715 24.324 370 247 11 116 469 58 410 1.59e-14 75.9
MS.gene27917.t1 AT3G14630 24.907 269 176 8 231 489 255 507 1.97e-14 75.9
MS.gene27917.t1 AT4G31940 23.849 239 167 7 239 469 263 494 2.22e-14 75.9
MS.gene27917.t1 AT2G23220 28.774 212 136 6 230 440 254 451 2.25e-14 75.9
MS.gene27917.t1 AT3G14630 25.651 269 174 9 231 489 310 562 2.36e-14 75.9
MS.gene27917.t1 AT2G45580 23.200 250 158 9 216 459 251 472 2.53e-14 75.9
MS.gene27917.t1 AT3G26830 24.359 234 165 6 228 456 232 458 3.07e-14 75.5
MS.gene27917.t1 AT2G46960 22.727 396 252 13 116 488 35 399 3.75e-14 74.7
MS.gene27917.t1 AT5G47990 23.757 362 234 12 151 492 170 509 3.97e-14 75.1
MS.gene27917.t1 AT4G37400 23.203 306 202 7 161 455 166 449 3.98e-14 75.1
MS.gene27917.t1 AT5G38450 27.830 212 131 4 280 485 316 511 4.65e-14 75.1
MS.gene27917.t1 AT2G23190 25.338 296 202 8 148 440 201 480 6.98e-14 74.3
MS.gene27917.t1 AT3G61880 22.936 218 156 5 232 445 272 481 7.62e-14 74.3
MS.gene27917.t1 AT2G45550 24.519 208 150 3 259 466 278 478 8.89e-14 73.9
MS.gene27917.t1 AT4G37310 25.097 259 171 8 215 465 225 468 9.61e-14 73.9
MS.gene27917.t1 AT1G33730 25.403 248 161 9 223 466 115 342 1.04e-13 73.2
MS.gene27917.t1 AT1G33730 25.403 248 161 9 223 466 115 342 1.04e-13 73.2
MS.gene27917.t1 AT3G61880 22.936 218 156 5 232 445 272 481 1.18e-13 73.6
MS.gene27917.t1 AT3G03470 25.217 230 157 5 271 490 285 509 1.41e-13 73.6
MS.gene27917.t1 AT2G26170 25.100 251 176 7 246 490 194 438 1.67e-13 72.8
MS.gene27917.t1 AT2G26170 25.100 251 176 7 246 490 277 521 1.81e-13 73.2
MS.gene27917.t1 AT2G45560 23.932 234 165 6 237 466 254 478 1.86e-13 73.2
MS.gene27917.t1 AT1G67110 28.082 146 100 2 340 485 365 505 2.10e-13 72.8
MS.gene27917.t1 AT1G50520 22.321 448 301 16 68 490 85 510 2.44e-13 72.8
MS.gene27917.t1 AT2G30770 28.272 191 128 5 278 468 287 468 2.89e-13 72.4
MS.gene27917.t1 AT2G12190 24.583 240 169 6 257 491 279 511 3.13e-13 72.4
MS.gene27917.t1 AT3G20130 25.794 252 170 9 248 490 237 480 4.27e-13 71.6
MS.gene27917.t1 AT3G20130 25.794 252 170 9 248 490 265 508 4.52e-13 71.6
MS.gene27917.t1 AT3G14620 26.289 194 131 3 292 482 323 507 4.56e-13 71.6
MS.gene27917.t1 AT3G26210 22.343 367 257 12 116 469 123 474 6.75e-13 71.2
MS.gene27917.t1 AT4G39950 25.926 243 158 6 228 459 267 498 7.39e-13 71.2
MS.gene27917.t1 AT3G20120 23.902 205 143 5 248 446 264 461 7.59e-13 71.2
MS.gene27917.t1 AT3G20120 23.902 205 143 5 248 446 128 325 7.85e-13 70.5
MS.gene27917.t1 AT3G20120 23.902 205 143 5 248 446 128 325 7.85e-13 70.5
MS.gene27917.t1 AT3G20120 23.902 205 143 5 248 446 128 325 7.85e-13 70.5
MS.gene27917.t1 AT4G39950 25.926 243 158 6 228 459 307 538 7.89e-13 71.2
MS.gene27917.t1 AT3G26270 25.532 235 150 8 240 461 248 470 9.70e-13 70.9
MS.gene27917.t1 AT1G64930 24.167 240 170 7 257 491 278 510 1.08e-12 70.5
MS.gene27917.t1 AT2G45570 24.896 241 168 7 222 459 242 472 1.67e-12 70.1
MS.gene27917.t1 AT2G42250 24.211 190 130 4 287 469 305 487 1.79e-12 70.1
MS.gene27917.t1 AT5G57220 23.453 307 198 8 159 455 164 443 2.31e-12 69.3
MS.gene27917.t1 AT5G05260 27.528 178 112 4 272 443 306 472 2.91e-12 69.3
MS.gene27917.t1 AT5G05260 27.528 178 112 4 272 443 274 440 3.14e-12 68.9
MS.gene27917.t1 AT3G48280 25.424 177 116 3 282 458 281 441 3.40e-12 68.9
MS.gene27917.t1 AT3G48290 25.664 226 148 7 240 458 240 452 5.27e-12 68.6
MS.gene27917.t1 AT1G13100 24.118 340 229 13 116 440 117 442 5.88e-12 68.2
MS.gene27917.t1 AT5G24950 28.780 205 127 7 260 458 267 458 5.91e-12 68.2
MS.gene27917.t1 AT3G48310 22.667 225 159 5 240 459 239 453 9.30e-12 67.8
MS.gene27917.t1 AT4G37430 22.712 295 186 8 162 440 172 440 9.59e-12 67.8
MS.gene27917.t1 AT4G31500 25.833 240 161 7 206 438 212 441 9.65e-12 67.4
MS.gene27917.t1 AT2G42850 23.113 212 150 5 240 448 241 442 1.83e-11 66.6
MS.gene27917.t1 AT2G40890 25.106 235 146 10 223 445 229 445 1.94e-11 66.6
MS.gene27917.t1 AT5G25140 21.448 373 266 10 104 466 109 464 2.36e-11 66.2
MS.gene27917.t1 AT1G16400 23.404 282 198 7 221 490 251 526 2.87e-11 66.2
MS.gene27917.t1 AT1G79370 22.709 251 158 6 217 444 246 483 3.02e-11 66.2
MS.gene27917.t1 AT3G26230 24.658 219 146 6 231 440 236 444 4.27e-11 65.5
MS.gene27917.t1 AT4G15380 22.630 327 222 11 154 458 152 469 4.34e-11 65.5
MS.gene27917.t1 AT4G12300 21.401 257 190 4 217 467 233 483 4.53e-11 65.5
MS.gene27917.t1 AT3G44970 23.045 243 180 4 247 489 240 475 5.83e-11 65.1
MS.gene27917.t1 AT3G20960 25.743 202 128 8 255 446 272 461 9.14e-11 64.7
MS.gene27917.t1 AT3G20960 26.131 199 125 8 258 446 172 358 9.20e-11 64.3

Find 85 sgRNAs with CRISPR-Local

Find 112 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAGCTATATGTGAAGCTTTA+AGG 0.193503 4.1:+12105804 MS.gene27917:CDS
TTGGAAGGGTGGAGGAAATA+TGG 0.200813 4.1:+12105936 MS.gene27917:CDS
GATAATGATTGGAAAGATTT+AGG 0.206426 4.1:+12105746 MS.gene27917:CDS
AAAACTTTCCTGCTTGAAAA+TGG 0.214529 4.1:-12105129 None:intergenic
TTGTCCTTGCGTTTCTCTTT+TGG 0.237205 4.1:-12105504 None:intergenic
AACAGAAAGACTTGGGATTA+TGG 0.258538 4.1:-12106158 None:intergenic
GTTTGTGTAATCATGGAAAT+TGG 0.325321 4.1:-12104880 None:intergenic
TTCTGTTTAGCCTCCAATAA+TGG 0.327958 4.1:-12104797 None:intergenic
TTTCACCTCTTCAAGAATCT+TGG 0.334631 4.1:-12105702 None:intergenic
TGTGATATGTTGCACGTTCA+TGG 0.346302 4.1:-12104985 None:intergenic
TGCTGGACCAAGGAGTTGTT+TGG 0.352265 4.1:+12106051 MS.gene27917:CDS
AAAGTGAGTTTGTGTAATCA+TGG 0.369896 4.1:-12104887 None:intergenic
ACAGAAAGACTTGGGATTAT+GGG 0.382050 4.1:-12106157 None:intergenic
GAAACACACCCATCACAAAA+TGG 0.382719 4.1:+12104817 MS.gene27917:CDS
TCAGGTCCGATTCTCACATT+TGG 0.385485 4.1:+12105081 MS.gene27917:CDS
AGAATCTTGGCTTCAACAAA+AGG 0.387762 4.1:-12105689 None:intergenic
TGGAAGGGTGGAGGAAATAT+GGG 0.387925 4.1:+12105937 MS.gene27917:CDS
CATCACAAAATGGCCTTTCA+TGG 0.390466 4.1:+12104827 MS.gene27917:CDS
TTCTTAGAAATCCACCTCTC+TGG 0.395719 4.1:-12105983 None:intergenic
CTATTAGTTCTGCCTTAACT+TGG 0.401598 4.1:+12105642 MS.gene27917:CDS
ACAGAGATATTTGAAGTCCT+TGG 0.402398 4.1:+12105047 MS.gene27917:CDS
CATCTCCTACTTGAAACATA+AGG 0.408931 4.1:-12105550 None:intergenic
ATATTAAAATTGTTGATCAA+TGG 0.418326 4.1:+12105462 MS.gene27917:CDS
CCTTTCATGGGAATGCTACC+TGG 0.419350 4.1:+12104840 MS.gene27917:CDS
TGTCATGGGAAATATCCTTT+TGG 0.419886 4.1:+12104752 None:intergenic
AAGTTCATTGCTTTCAATGC+TGG 0.422395 4.1:+12106034 MS.gene27917:CDS
CATCAAGAGAAGATAATGAT+TGG 0.428959 4.1:+12105735 MS.gene27917:CDS
GAAAGCAATGAACTTGTAAG+AGG 0.446809 4.1:-12106026 None:intergenic
ACATATGAAGCATGGCTTGA+AGG 0.446818 4.1:+12106186 MS.gene27917:CDS
TTCAAGTTGGTGAAGAGAAA+AGG 0.448909 4.1:+12105429 MS.gene27917:CDS
AAGTTAGATTTATGCTCAAA+AGG 0.450399 4.1:-12105842 None:intergenic
ATGATTGGAAAGATTTAGGA+AGG 0.454765 4.1:+12105750 MS.gene27917:CDS
AAGCTTCATTGAATTGAAGA+TGG 0.465414 4.1:+12106084 MS.gene27917:CDS
GCTTTCTCACATGAAATGTC+AGG 0.466520 4.1:-12105332 None:intergenic
GCAATTAATCTACTTGCTGC+TGG 0.467366 4.1:+12105611 MS.gene27917:CDS
AGCAATTTAGTTTATCTACA+TGG 0.468448 4.1:+12105782 MS.gene27917:CDS
GCTGGACCAAGGAGTTGTTT+GGG 0.470264 4.1:+12106052 MS.gene27917:CDS
AGATCGATAGAAAGACAAAC+AGG 0.485342 4.1:-12105308 None:intergenic
GATTTATGCTCAAAAGGTAC+TGG 0.494389 4.1:-12105836 None:intergenic
TCAAGCCATGCTTCATATGT+AGG 0.498108 4.1:-12106183 None:intergenic
GAGAGGTGGATTTCTAAGAA+AGG 0.501802 4.1:+12105986 MS.gene27917:CDS
CGAAAAGAAGCACTGCCAAA+AGG 0.503653 4.1:-12104767 None:intergenic
TCGTTGCAATCCATTATTGG+AGG 0.504054 4.1:+12104787 MS.gene27917:CDS
AATATGGGGAGAAGATTGCT+TGG 0.509538 4.1:+12105952 MS.gene27917:CDS
ATCTCCTACTTGAAACATAA+GGG 0.517308 4.1:-12105549 None:intergenic
TCTTTACCCAAACAACTCCT+TGG 0.517578 4.1:-12106058 None:intergenic
ATATTTGAAGTCCTTGGAGA+TGG 0.519247 4.1:+12105053 MS.gene27917:CDS
GTACTTCCAAATGTGAGAAT+CGG 0.520095 4.1:-12105087 None:intergenic
GAATCTTGGCTTCAACAAAA+GGG 0.520382 4.1:-12105688 None:intergenic
CTTATGTTTCAAGTAGGAGA+TGG 0.527807 4.1:+12105551 MS.gene27917:CDS
TGGAAAGATTTAGGAAGGGA+AGG 0.532284 4.1:+12105755 MS.gene27917:CDS
AATACCCTTATGTTTCAAGT+AGG 0.532528 4.1:+12105545 MS.gene27917:CDS
CATTGTTCTATAGACATGTA+AGG 0.545180 4.1:+12105375 MS.gene27917:CDS
TGAAGCCAAGATTCTTGAAG+AGG 0.546650 4.1:+12105697 MS.gene27917:CDS
GGAAAGATTTAGGAAGGGAA+GGG 0.546663 4.1:+12105756 MS.gene27917:CDS
ATCACAAAATGGCCTTTCAT+GGG 0.556424 4.1:+12104828 MS.gene27917:CDS
GACTTAATCATATGACCACT+TGG 0.561909 4.1:-12105881 None:intergenic
TTCTCTATACTCAGTTGGAA+GGG 0.571547 4.1:+12105922 MS.gene27917:CDS
TTATGCTCAAAAGGTACTGG+TGG 0.574882 4.1:-12105833 None:intergenic
TGTAGGACAACAGAAAGACT+TGG 0.575895 4.1:-12106166 None:intergenic
ACCTGAAAATTCCATCTCCA+AGG 0.576187 4.1:-12105064 None:intergenic
TCTATACTCAGTTGGAAGGG+TGG 0.580101 4.1:+12105925 MS.gene27917:CDS
ATTCTCTATACTCAGTTGGA+AGG 0.582327 4.1:+12105921 MS.gene27917:CDS
TTGCACGTTCATGGAGTCAC+TGG 0.583109 4.1:-12104976 None:intergenic
AGGTGGATTTCTAAGAAAGG+AGG 0.583250 4.1:+12105989 MS.gene27917:CDS
GTTGTCCTACATATGAAGCA+TGG 0.583617 4.1:+12106178 MS.gene27917:CDS
TATCACATTCACGTGGTGGA+AGG 0.583671 4.1:+12106130 MS.gene27917:CDS
CTGTATTCTCTATACTCAGT+TGG 0.584110 4.1:+12105917 MS.gene27917:CDS
CCAGGTAGCATTCCCATGAA+AGG 0.585060 4.1:-12104840 None:intergenic
ATACTCAGTTGGAAGGGTGG+AGG 0.586488 4.1:+12105928 MS.gene27917:CDS
TGGAATTTAAACCAGAGAGG+TGG 0.591655 4.1:+12105972 MS.gene27917:CDS
CTTTCTCACATGAAATGTCA+GGG 0.618479 4.1:-12105331 None:intergenic
TTGCTTTCAATGCTGGACCA+AGG 0.618716 4.1:+12106041 MS.gene27917:CDS
AAAGCAATGAACTTGTAAGA+GGG 0.622819 4.1:-12106025 None:intergenic
GGTGGATTTCTAAGAAAGGA+GGG 0.623329 4.1:+12105990 MS.gene27917:CDS
GGAAGGGTGGAGGAAATATG+GGG 0.623365 4.1:+12105938 MS.gene27917:CDS
AAAGACTTGGGATTATGGGA+TGG 0.635373 4.1:-12106153 None:intergenic
GTAGGACAACAGAAAGACTT+GGG 0.636482 4.1:-12106165 None:intergenic
TGATTGGAAAGATTTAGGAA+GGG 0.646421 4.1:+12105751 MS.gene27917:CDS
GCTTGGAATTTAAACCAGAG+AGG 0.654033 4.1:+12105969 MS.gene27917:CDS
AAATCCAAAAGAGAAACGCA+AGG 0.660883 4.1:+12105500 MS.gene27917:CDS
AAATCTGATGTGCTTCCAAG+TGG 0.663862 4.1:+12105866 MS.gene27917:CDS
GACACGTTACGTAAGAAACC+AGG 0.687165 4.1:-12104858 None:intergenic
GAACTATCACATTCACGTGG+TGG 0.709817 4.1:+12106126 MS.gene27917:CDS
GTTGAACTATCACATTCACG+TGG 0.753004 4.1:+12106123 MS.gene27917:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAAAATTGTTGATCAA+TGG + chr4.1:12105462-12105481 MS.gene27917:CDS 15.0%
!!! AACTCACTTTTAAAACAAAA+TGG + chr4.1:12104900-12104919 MS.gene27917:CDS 20.0%
!!! AGTACAAATTTTGAAAACTA+TGG + chr4.1:12105008-12105027 MS.gene27917:CDS 20.0%
!!! GTACAAATTTTGAAAACTAT+GGG + chr4.1:12105009-12105028 MS.gene27917:CDS 20.0%
! AAGTTAGATTTATGCTCAAA+AGG - chr4.1:12105845-12105864 None:intergenic 25.0%
! GATAATGATTGGAAAGATTT+AGG + chr4.1:12105746-12105765 MS.gene27917:CDS 25.0%
!! AACATATGTTGTGTAGTTTT+AGG + chr4.1:12105278-12105297 MS.gene27917:CDS 25.0%
!! AGCAATTTAGTTTATCTACA+TGG + chr4.1:12105782-12105801 MS.gene27917:CDS 25.0%
!!! AATTTTGAAAACTATGGGAA+AGG + chr4.1:12105014-12105033 MS.gene27917:CDS 25.0%
!!! ACATATGTTGTGTAGTTTTA+GGG + chr4.1:12105279-12105298 MS.gene27917:CDS 25.0%
!!! ACTAGAAATTTTTTGCTCAA+TGG - chr4.1:12105174-12105193 None:intergenic 25.0%
!!! TCACTTTTAAAACAAAATGG+AGG + chr4.1:12104903-12104922 MS.gene27917:CDS 25.0%
AAAACTTTCCTGCTTGAAAA+TGG - chr4.1:12105132-12105151 None:intergenic 30.0%
AAAGCAATGAACTTGTAAGA+GGG - chr4.1:12106028-12106047 None:intergenic 30.0%
AAAGTGAGTTTGTGTAATCA+TGG - chr4.1:12104890-12104909 None:intergenic 30.0%
AAGCTTCATTGAATTGAAGA+TGG + chr4.1:12106084-12106103 MS.gene27917:CDS 30.0%
ATCTCCTACTTGAAACATAA+GGG - chr4.1:12105552-12105571 None:intergenic 30.0%
ATGATTGGAAAGATTTAGGA+AGG + chr4.1:12105750-12105769 MS.gene27917:CDS 30.0%
CATCAAGAGAAGATAATGAT+TGG + chr4.1:12105735-12105754 MS.gene27917:CDS 30.0%
CATTGTTCTATAGACATGTA+AGG + chr4.1:12105375-12105394 MS.gene27917:CDS 30.0%
CTTGATCATGCTTGTAAAAA+AGG + chr4.1:12105209-12105228 MS.gene27917:CDS 30.0%
GTTTGTGTAATCATGGAAAT+TGG - chr4.1:12104883-12104902 None:intergenic 30.0%
TGATTGGAAAGATTTAGGAA+GGG + chr4.1:12105751-12105770 MS.gene27917:CDS 30.0%
! AATACCCTTATGTTTCAAGT+AGG + chr4.1:12105545-12105564 MS.gene27917:CDS 30.0%
! TTTCAAGCAGGAAAGTTTTA+AGG + chr4.1:12105133-12105152 MS.gene27917:CDS 30.0%
! TTTTCGTTGCAATCCATTAT+TGG + chr4.1:12104784-12104803 MS.gene27917:CDS 30.0%
!! ACTTGCAAGATGTTTTTCAA+AGG + chr4.1:12105243-12105262 MS.gene27917:CDS 30.0%
!! TGACAAGTTTTTGAGAGATA+CGG + chr4.1:12105589-12105608 MS.gene27917:CDS 30.0%
!!! ATGTAAGGCCAAGATTTTTT+TGG + chr4.1:12105390-12105409 MS.gene27917:CDS 30.0%
!!! TTTTTTGGAAGCTGCAAAAA+TGG + chr4.1:12105405-12105424 MS.gene27917:CDS 30.0%
AAATCCAAAAGAGAAACGCA+AGG + chr4.1:12105500-12105519 MS.gene27917:CDS 35.0%
AACAGAAAGACTTGGGATTA+TGG - chr4.1:12106161-12106180 None:intergenic 35.0%
AAGTTCATTGCTTTCAATGC+TGG + chr4.1:12106034-12106053 MS.gene27917:CDS 35.0%
ACAGAAAGACTTGGGATTAT+GGG - chr4.1:12106160-12106179 None:intergenic 35.0%
AGAATCTTGGCTTCAACAAA+AGG - chr4.1:12105692-12105711 None:intergenic 35.0%
AGATCGATAGAAAGACAAAC+AGG - chr4.1:12105311-12105330 None:intergenic 35.0%
ATCACAAAATGGCCTTTCAT+GGG + chr4.1:12104828-12104847 MS.gene27917:CDS 35.0%
ATTCTCTATACTCAGTTGGA+AGG + chr4.1:12105921-12105940 MS.gene27917:CDS 35.0%
CAACCAGAAAAACCAAGTTA+AGG - chr4.1:12105657-12105676 None:intergenic 35.0%
CATCTCCTACTTGAAACATA+AGG - chr4.1:12105553-12105572 None:intergenic 35.0%
CTGTATTCTCTATACTCAGT+TGG + chr4.1:12105917-12105936 MS.gene27917:CDS 35.0%
CTTTCTCACATGAAATGTCA+GGG - chr4.1:12105334-12105353 None:intergenic 35.0%
GAAAGCAATGAACTTGTAAG+AGG - chr4.1:12106029-12106048 None:intergenic 35.0%
GAATCTTGGCTTCAACAAAA+GGG - chr4.1:12105691-12105710 None:intergenic 35.0%
GACTTAATCATATGACCACT+TGG - chr4.1:12105884-12105903 None:intergenic 35.0%
GAGCTATATGTGAAGCTTTA+AGG + chr4.1:12105804-12105823 MS.gene27917:CDS 35.0%
GTACTTCCAAATGTGAGAAT+CGG - chr4.1:12105090-12105109 None:intergenic 35.0%
TGCAGCTTCCAAAAAAATCT+TGG - chr4.1:12105401-12105420 None:intergenic 35.0%
TTCTCTATACTCAGTTGGAA+GGG + chr4.1:12105922-12105941 MS.gene27917:CDS 35.0%
TTCTGTTTAGCCTCCAATAA+TGG - chr4.1:12104800-12104819 None:intergenic 35.0%
TTTCACCTCTTCAAGAATCT+TGG - chr4.1:12105705-12105724 None:intergenic 35.0%
! ACAGAGATATTTGAAGTCCT+TGG + chr4.1:12105047-12105066 MS.gene27917:CDS 35.0%
! ATATTTGAAGTCCTTGGAGA+TGG + chr4.1:12105053-12105072 MS.gene27917:CDS 35.0%
! CTTATGTTTCAAGTAGGAGA+TGG + chr4.1:12105551-12105570 MS.gene27917:CDS 35.0%
! GATTTATGCTCAAAAGGTAC+TGG - chr4.1:12105839-12105858 None:intergenic 35.0%
! TGTGTTTTCTGCTTGAGTAA+AGG - chr4.1:12105357-12105376 None:intergenic 35.0%
!! ACTTCATTCCATTTTCAAGC+AGG + chr4.1:12105121-12105140 MS.gene27917:CDS 35.0%
!! ATGAAAGGCCATTTTGTGAT+GGG - chr4.1:12104828-12104847 None:intergenic 35.0%
!! CTATTAGTTCTGCCTTAACT+TGG + chr4.1:12105642-12105661 MS.gene27917:CDS 35.0%
!! CTTAACTTGGTTTTTCTGGT+TGG + chr4.1:12105655-12105674 MS.gene27917:CDS 35.0%
!! CTTTCATTTTTGAAGGAGCA+TGG + chr4.1:12104928-12104947 MS.gene27917:CDS 35.0%
!! GGAGGAACTTTCATTTTTGA+AGG + chr4.1:12104921-12104940 MS.gene27917:CDS 35.0%
!! TTCAAGTTGGTGAAGAGAAA+AGG + chr4.1:12105429-12105448 MS.gene27917:CDS 35.0%
AAAGACTTGGGATTATGGGA+TGG - chr4.1:12106156-12106175 None:intergenic 40.0%
AAATCTGATGTGCTTCCAAG+TGG + chr4.1:12105866-12105885 MS.gene27917:CDS 40.0%
AATATGGGGAGAAGATTGCT+TGG + chr4.1:12105952-12105971 MS.gene27917:CDS 40.0%
ACATATGAAGCATGGCTTGA+AGG + chr4.1:12106186-12106205 MS.gene27917:CDS 40.0%
ACCTGAAAATTCCATCTCCA+AGG - chr4.1:12105067-12105086 None:intergenic 40.0%
CATCACAAAATGGCCTTTCA+TGG + chr4.1:12104827-12104846 MS.gene27917:CDS 40.0%
CTGCAAAAATGGCTTCAAGT+TGG + chr4.1:12105416-12105435 MS.gene27917:CDS 40.0%
GAAACACACCCATCACAAAA+TGG + chr4.1:12104817-12104836 MS.gene27917:CDS 40.0%
GCTTGGAATTTAAACCAGAG+AGG + chr4.1:12105969-12105988 MS.gene27917:CDS 40.0%
GCTTTCTCACATGAAATGTC+AGG - chr4.1:12105335-12105354 None:intergenic 40.0%
GGAAAGATTTAGGAAGGGAA+GGG + chr4.1:12105756-12105775 MS.gene27917:CDS 40.0%
GTAGGACAACAGAAAGACTT+GGG - chr4.1:12106168-12106187 None:intergenic 40.0%
GTTGAACTATCACATTCACG+TGG + chr4.1:12106123-12106142 MS.gene27917:CDS 40.0%
GTTGTCCTACATATGAAGCA+TGG + chr4.1:12106178-12106197 MS.gene27917:CDS 40.0%
TCAAGCCATGCTTCATATGT+AGG - chr4.1:12106186-12106205 None:intergenic 40.0%
TCGTTGCAATCCATTATTGG+AGG + chr4.1:12104787-12104806 MS.gene27917:CDS 40.0%
TCTTTACCCAAACAACTCCT+TGG - chr4.1:12106061-12106080 None:intergenic 40.0%
TGAAGCCAAGATTCTTGAAG+AGG + chr4.1:12105697-12105716 MS.gene27917:CDS 40.0%
TGGAAAGATTTAGGAAGGGA+AGG + chr4.1:12105755-12105774 MS.gene27917:CDS 40.0%
TGGAATTTAAACCAGAGAGG+TGG + chr4.1:12105972-12105991 MS.gene27917:CDS 40.0%
TGTAGGACAACAGAAAGACT+TGG - chr4.1:12106169-12106188 None:intergenic 40.0%
TGTGATATGTTGCACGTTCA+TGG - chr4.1:12104988-12105007 None:intergenic 40.0%
TTCTTAGAAATCCACCTCTC+TGG - chr4.1:12105986-12106005 None:intergenic 40.0%
! AGGTGGATTTCTAAGAAAGG+AGG + chr4.1:12105989-12106008 MS.gene27917:CDS 40.0%
! GAGAGGTGGATTTCTAAGAA+AGG + chr4.1:12105986-12106005 MS.gene27917:CDS 40.0%
! GCAATTAATCTACTTGCTGC+TGG + chr4.1:12105611-12105630 MS.gene27917:CDS 40.0%
! GGTGGATTTCTAAGAAAGGA+GGG + chr4.1:12105990-12106009 MS.gene27917:CDS 40.0%
! TCCTTGGAGATGGAATTTTC+AGG + chr4.1:12105063-12105082 MS.gene27917:CDS 40.0%
! TTGTCCTTGCGTTTCTCTTT+TGG - chr4.1:12105507-12105526 None:intergenic 40.0%
!! CATGAAAGGCCATTTTGTGA+TGG - chr4.1:12104829-12104848 None:intergenic 40.0%
!! CTGCCTTAACTTGGTTTTTC+TGG + chr4.1:12105651-12105670 MS.gene27917:CDS 40.0%
!! TTATGCTCAAAAGGTACTGG+TGG - chr4.1:12105836-12105855 None:intergenic 40.0%
!!! AACTTGGTTTTTCTGGTTGG+TGG + chr4.1:12105658-12105677 MS.gene27917:CDS 40.0%
GAACTATCACATTCACGTGG+TGG + chr4.1:12106126-12106145 MS.gene27917:CDS 45.0%
GACACGTTACGTAAGAAACC+AGG - chr4.1:12104861-12104880 None:intergenic 45.0%
TCAGGTCCGATTCTCACATT+TGG + chr4.1:12105081-12105100 MS.gene27917:CDS 45.0%
TCTATACTCAGTTGGAAGGG+TGG + chr4.1:12105925-12105944 MS.gene27917:CDS 45.0%
TGGAAGGGTGGAGGAAATAT+GGG + chr4.1:12105937-12105956 MS.gene27917:CDS 45.0%
TTGCTTTCAATGCTGGACCA+AGG + chr4.1:12106041-12106060 MS.gene27917:CDS 45.0%
TTGGAAGGGTGGAGGAAATA+TGG + chr4.1:12105936-12105955 MS.gene27917:CDS 45.0%
! TATCACATTCACGTGGTGGA+AGG + chr4.1:12106130-12106149 MS.gene27917:CDS 45.0%
!! CGAAAAGAAGCACTGCCAAA+AGG - chr4.1:12104770-12104789 None:intergenic 45.0%
ATACTCAGTTGGAAGGGTGG+AGG + chr4.1:12105928-12105947 MS.gene27917:CDS 50.0%
CCAGGTAGCATTCCCATGAA+AGG - chr4.1:12104843-12104862 None:intergenic 50.0%
CCTTTCATGGGAATGCTACC+TGG + chr4.1:12104840-12104859 MS.gene27917:CDS 50.0%
GCTGGACCAAGGAGTTGTTT+GGG + chr4.1:12106052-12106071 MS.gene27917:CDS 50.0%
GGAAGGGTGGAGGAAATATG+GGG + chr4.1:12105938-12105957 MS.gene27917:CDS 50.0%
TGCTGGACCAAGGAGTTGTT+TGG + chr4.1:12106051-12106070 MS.gene27917:CDS 50.0%
TTGCACGTTCATGGAGTCAC+TGG - chr4.1:12104979-12104998 None:intergenic 50.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 12104756 12106234 12104756 ID=MS.gene27917
chr4.1 mRNA 12104756 12106234 12104756 ID=MS.gene27917.t1;Parent=MS.gene27917
chr4.1 exon 12104756 12106234 12104756 ID=MS.gene27917.t1.exon1;Parent=MS.gene27917.t1
chr4.1 CDS 12104756 12106234 12104756 ID=cds.MS.gene27917.t1;Parent=MS.gene27917.t1
Gene Sequence

>MS.gene27917

ATGGGAAATATCCTTTTGGCAGTGCTTCTTTTCGTTGCAATCCATTATTGGAGGCTAAACAGAAACACACCCATCACAAAATGGCCTTTCATGGGAATGCTACCTGGTTTCTTACGTAACGTGTCCAATTTCCATGATTACACAAACTCACTTTTAAAACAAAATGGAGGAACTTTCATTTTTGAAGGAGCATGGTTAACAAACATGAATATTGTTTTCACCAGTGACTCCATGAACGTGCAACATATCACAAGTACAAATTTTGAAAACTATGGGAAAGGAAATGAATTCACAGAGATATTTGAAGTCCTTGGAGATGGAATTTTCAGGTCCGATTCTCACATTTGGAAGTACAATAGAACACTACTTCATTCCATTTTCAAGCAGGAAAGTTTTAAGGTATTTCTTCACAAAACCATTGAGCAAAAAATTTCTAGTTGTCTTCTTATGTTTCTTGATCATGCTTGTAAAAAAGGAATGCAAGTTGACTTGCAAGATGTTTTTCAAAGGTTAACGTTTGACAACATATGTTGTGTAGTTTTAGGGTTTGATCCTGTTTGTCTTTCTATCGATCTCCCTGACATTTCATGTGAGAAAGCCTTTACTCAAGCAGAAAACACATTGTTCTATAGACATGTAAGGCCAAGATTTTTTTGGAAGCTGCAAAAATGGCTTCAAGTTGGTGAAGAGAAAAGGTTTACAGAGAATATTAAAATTGTTGATCAATGGTTGTATTCAGAAATCAAATCCAAAAGAGAAACGCAAGGACAAAAAAACATTGACTTGCTAAATACCCTTATGTTTCAAGTAGGAGATGGACAAAATCTCATAGATGACAAGTTTTTGAGAGATACGGCAATTAATCTACTTGCTGCTGGAAGAGATACTATTAGTTCTGCCTTAACTTGGTTTTTCTGGTTGGTGGCAACACACCCTTTTGTTGAAGCCAAGATTCTTGAAGAGGTGAAAGAAAATTTATCATCAAGAGAAGATAATGATTGGAAAGATTTAGGAAGGGAAGGGCTTAGCAATTTAGTTTATCTACATGGAGCTATATGTGAAGCTTTAAGGCTATATCCACCAGTACCTTTTGAGCATAAATCTAACTTGAAATCTGATGTGCTTCCAAGTGGTCATATGATTAAGTCAAATACTATGATACTGTATTCTCTATACTCAGTTGGAAGGGTGGAGGAAATATGGGGAGAAGATTGCTTGGAATTTAAACCAGAGAGGTGGATTTCTAAGAAAGGAGGGACAATTCATGTACCCTCTTACAAGTTCATTGCTTTCAATGCTGGACCAAGGAGTTGTTTGGGTAAAGATATAAGCTTCATTGAATTGAAGATGGTTGCTATAGCAATATTGTTGAACTATCACATTCACGTGGTGGAAGGCCATCCCATAATCCCAAGTCTTTCTGTTGTCCTACATATGAAGCATGGCTTGAAGGTTAATGTCCAAAAAAGAAGCTTTTGA

Protein sequence

>MS.gene27917.t1

MGNILLAVLLFVAIHYWRLNRNTPITKWPFMGMLPGFLRNVSNFHDYTNSLLKQNGGTFIFEGAWLTNMNIVFTSDSMNVQHITSTNFENYGKGNEFTEIFEVLGDGIFRSDSHIWKYNRTLLHSIFKQESFKVFLHKTIEQKISSCLLMFLDHACKKGMQVDLQDVFQRLTFDNICCVVLGFDPVCLSIDLPDISCEKAFTQAENTLFYRHVRPRFFWKLQKWLQVGEEKRFTENIKIVDQWLYSEIKSKRETQGQKNIDLLNTLMFQVGDGQNLIDDKFLRDTAINLLAAGRDTISSALTWFFWLVATHPFVEAKILEEVKENLSSREDNDWKDLGREGLSNLVYLHGAICEALRLYPPVPFEHKSNLKSDVLPSGHMIKSNTMILYSLYSVGRVEEIWGEDCLEFKPERWISKKGGTIHVPSYKFIAFNAGPRSCLGKDISFIELKMVAIAILLNYHIHVVEGHPIIPSLSVVLHMKHGLKVNVQKRSF