AlfalfaGEDB | MS.gene76900

M. sativa cultivar XinJiangDaYe / MS.gene76900

KEGG: K10717
GO: GO:0003674 GO:0003824 GO:0005488 GO:0005506 GO:0008150 GO:0008152 GO:0016491 GO:0016705 GO:0020037 GO:0043167 GO:0043169 GO:0046872 GO:0046906 GO:0046914 GO:0048037 GO:0055114 GO:0097159 GO:1901363
PFAM: PF00067.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76900.t1	KEH21516.1	98.1	474	9	0	1	474	1	474	9.10E-274	952.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76900.t1	Q9ZW95	71.8	475	129	4	1	473	40	511	1.4e-203	710.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76900.t1	A0A072TWF2	98.1	474	9	0	1	474	1	474	6.5e-274	952.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049171	MS.gene76900	-0.839173	1.86E-57	-1.69E-46
MS.gene049217	MS.gene76900	-0.815471	9.09E-52	-1.69E-46
MS.gene049222	MS.gene76900	-0.833304	5.76E-56	-1.69E-46
MS.gene049285	MS.gene76900	-0.810713	1.01E-50	-1.69E-46
MS.gene049320	MS.gene76900	-0.800334	1.51E-48	-1.69E-46
MS.gene049609	MS.gene76900	-0.801264	9.77E-49	-1.69E-46
MS.gene049611	MS.gene76900	0.827586	1.44E-54	-1.69E-46
MS.gene049633	MS.gene76900	-0.812296	4.55E-51	-1.69E-46
MS.gene050163	MS.gene76900	-0.813894	2.03E-51	-1.69E-46
MS.gene050165	MS.gene76900	-0.811748	5.99E-51	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene07377	MS.gene76900	PPI
MS.gene76900	MS.gene047456	PPI
MS.gene76900	MS.gene95986	PPI
MS.gene76900	MS.gene047450	PPI
MS.gene76900	MS.gene047453	PPI
MS.gene76900	MS.gene039269	PPI
MS.gene76900	MS.gene060975	PPI
MS.gene76900	MS.gene56607	PPI
MS.gene76900	MS.gene56611	PPI
MS.gene76900	MS.gene002268	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76900.t1	MTR_7g006900	98.101	474	9	0	1	474	1	474	0.0	968
MS.gene76900.t1	MTR_6g017325	79.325	474	96	2	1	473	36	508	0.0	798
MS.gene76900.t1	MTR_7g006900	97.904	334	7	0	1	334	38	371	0.0	683
MS.gene76900.t1	MTR_1g085680	41.856	485	259	7	4	473	41	517	1.05e-132	394
MS.gene76900.t1	MTR_1g101040	38.066	486	277	8	1	472	40	515	5.24e-114	345
MS.gene76900.t1	MTR_4g113650	37.238	478	290	5	4	472	43	519	1.36e-113	345
MS.gene76900.t1	MTR_1g101050	37.552	482	273	9	5	472	44	511	9.50e-112	340
MS.gene76900.t1	MTR_8g008530	36.495	485	282	8	1	467	38	514	1.90e-109	334
MS.gene76900.t1	MTR_3g093530	35.934	487	289	8	1	470	42	522	2.50e-109	334
MS.gene76900.t1	MTR_6g072490	36.667	480	276	8	8	473	49	514	2.38e-107	328

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene76900.t1	AT5G38450	71.130	478	132	3	1	472	39	516	0.0	669
MS.gene76900.t1	AT1G67110	71.368	475	131	3	1	473	40	511	0.0	662
MS.gene76900.t1	AT5G38450	67.742	341	105	2	1	336	39	379	7.89e-154	443
MS.gene76900.t1	AT1G67110	67.953	337	104	2	1	336	40	373	1.02e-148	429
MS.gene76900.t1	AT2G46950	40.580	483	265	8	4	473	98	571	2.00e-117	356
MS.gene76900.t1	AT2G26710	37.474	483	276	8	4	472	45	515	2.04e-115	349
MS.gene76900.t1	AT2G46960	38.477	486	281	6	1	473	38	518	2.46e-115	349
MS.gene76900.t1	AT5G24900	37.705	488	276	12	1	467	42	522	2.95e-111	339
MS.gene76900.t1	AT5G24910	37.854	494	272	11	1	467	42	527	4.19e-109	333
MS.gene76900.t1	AT5G52400	37.137	482	282	7	4	472	46	519	2.59e-107	328

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Find 117 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAGGGAAGCCATGTCG+AGG	0.656391	7.2:+91358337	None:intergenic
AAAGTCATTGAAGATGGAAG+TGG	0.510520	7.2:-91356392	MS.gene76900:CDS
AAGAAAATCATGGAGATGCA+AGG	0.597678	7.2:-91358399	None:intergenic
AAGAGGTATATATATTGGAA+TGG	0.592355	7.2:-91357975	MS.gene76900:CDS
AAGTTAGAGCTGAGGTTAAA+AGG	0.201156	7.2:-91356126	MS.gene76900:CDS
AATTGACGTACGTACCGAAT+TGG	0.341867	7.2:+91358232	None:intergenic
ACAAATTTGAACCCCATGCT+TGG	0.402150	7.2:+91354277	None:intergenic
ACCCAATATTATGTCTTCAA+AGG	0.556442	7.2:+91354589	None:intergenic
ACCTGCTGCCAGGAAAGCAA+AGG	0.628029	7.2:+91357067	None:intergenic
ACCTTTGCTTTCCTGGCAGC+AGG	0.434313	7.2:-91357068	MS.gene76900:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGGAAAAAGGAAAATTGG+TGG	+	chr7.2:91355640-91355659	None:intergenic	30.0%
AAGATGCAATTGGTGTATAT+AGG	-	chr7.2:91356202-91356221	MS.gene76900:CDS	30.0%
ACCCAATATTATGTCTTCAA+AGG	+	chr7.2:91358060-91358079	None:intergenic	30.0%
ACTTCAAAATCATTCATTCC+TGG	-	chr7.2:91358188-91358207	MS.gene76900:intron	30.0%
AGAAAAGATTGTGTTGAGAT+TGG	-	chr7.2:91356306-91356325	MS.gene76900:CDS	30.0%
ATGTTAGAATCGCTACAAAA+AGG	-	chr7.2:91355394-91355413	MS.gene76900:intron	30.0%
ATTGGAAGAAGCAATTCTTA+TGG	-	chr7.2:91356324-91356343	MS.gene76900:CDS	30.0%
ATTTCTCTATTGTACTTGCT+TGG	+	chr7.2:91356234-91356253	None:intergenic	30.0%
CATATCATGAACTAATACAC+CGG	-	chr7.2:91356682-91356701	MS.gene76900:intron	30.0%
CATCATAGTGAAAAACTATG+GGG	-	chr7.2:91358131-91358150	MS.gene76900:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.2	gene	91354256	91358412	91354256	ID=MS.gene76900
chr7.2	mRNA	91354256	91358412	91354256	ID=MS.gene76900.t1;Parent=MS.gene76900
chr7.2	exon	91358247	91358412	91358247	ID=MS.gene76900.t1.exon1;Parent=MS.gene76900.t1
chr7.2	CDS	91358247	91358412	91358247	ID=cds.MS.gene76900.t1;Parent=MS.gene76900.t1
chr7.2	exon	91357773	91357999	91357773	ID=MS.gene76900.t1.exon2;Parent=MS.gene76900.t1
chr7.2	CDS	91357773	91357999	91357773	ID=cds.MS.gene76900.t1;Parent=MS.gene76900.t1
chr7.2	exon	91357069	91357310	91357069	ID=MS.gene76900.t1.exon3;Parent=MS.gene76900.t1
chr7.2	CDS	91357069	91357310	91357069	ID=cds.MS.gene76900.t1;Parent=MS.gene76900.t1
chr7.2	exon	91356075	91356444	91356075	ID=MS.gene76900.t1.exon4;Parent=MS.gene76900.t1
chr7.2	CDS	91356075	91356444	91356075	ID=cds.MS.gene76900.t1;Parent=MS.gene76900.t1
chr7.2	exon	91354256	91354675	91354256	ID=MS.gene76900.t1.exon5;Parent=MS.gene76900.t1
chr7.2	CDS	91354256	91354675	91354256	ID=cds.MS.gene76900.t1;Parent=MS.gene76900.t1

Gene Sequence

>MS.gene76900

ATGGAGATGCAAGGTGTTCGGGGCCCGAAACCTTGCTTCTTCACCGGGAACATCCTCGACATGGCTTCCCTTGTTTCCAAATCAACCTCACAAGACATGAAAACTATAAGCCATGACATTGTCGGTCGCCTTCTTCCTCATTTTGTTCTCTGGTCGTCCCAATTCGGTACGTACGTCAATTATACGTATAGATAACGACTCAGGTGAAACACTTTGTTGTGATTCAAATATAACAAATTGTTCTCATCTATATATATATATATATATATATATATATATATATATATATATATATGATGATAATAATAACATATAATAATAATTTTTTGAGGGGAATATAATAATAATAATAATAATAATAATAATAGTAATTATAATTAGTTTAATTGGACATGTTAATTTTGATTGTGTAGGAAAGAGGTATATATATTGGAATGGTCCAGAGCCAAGGCTGTGTTTGACAGAAACTGAATTGATAAAAGAGTTTCTTTCAAAATACAGTACAGTATCTGGAAAATCATGGTTACAAAAACAGGGTTCAAAACATTTCATTGGAGAAGGAGTATTGATGGCAAATGGTGAAAATTGGTATCACCAACGTCACATTGTTGCCCCTGCATTCATGGGGGACAGACTTAAGGTATTATTCAATCATACTCATCATGGGTTTGAATTGACTTTACTCATCATGGGTCTAGCGGCGCAGCTTGTTGCCTGCTTGCCTTCTATTTAAGCGTAAATAATGGTTTATATAAAGTATTTTAACTTTCTCTAAAATGTTATCATCACATTGGTGATTGTTGAATCAAGATCAAACGGCACAGAAAGCAATTATATTTTCATTTTTTTTAAACCATTAAATACCAAGTTTGAAATATTGACGGTCTGATCTTGATCTAACATCCACCAGTATGCTAATTGCATTAAATTTGTAACTGCGGACAACCCTATAATATTATAATACACAAACACAGATATCAGACATAACACTAAAAAAAGCTATTAAATATCTCAAACACTTACACGTGTCACACACTCAAACATGCTTTCAATTTGAAGTGTCAGTGCTCTGCATAGAAAAACATTGATGATGTTATTGCAGAGCTATGCAGGGCATATGGTGGAATGTACTAAAGAGATGTTAGAATCGCTACAAAAAGGGTTGGAGTGTGGACAAAGTGAGGTGGAGATTGGTGAGTACATGGCTAAACTTACTGCAGATATTATCTCTAGAACTGAGTTTGGTACAAGCTACCAAAAGGGAAGAAAAATATTCCATCTCCTCACAGTTCTCCAGACTCTCTGTGCTCAAGCAAGTCGCCACCTTTGCTTTCCTGGCAGCAGGTAGGTACTTTCACTTTACAACAACTTTGTTTCCAAACCACCAATTTTCCTTTTTCCTTTTCCAAAATAATAATAATAATAGTTGGTATTTGTGTCATTCAGTGTTTATTTAAAATTGCGAGCGCGACTATGTTAAATTATTCTTATTAACTATTGATGTATTTTGCTTTAAAAAAACTGTTGACGTATTTCGGTTACAATAAAAGTAAAGTGAGAGAATATCAAATTGAGAGTGTTGCACTAAAAATAATATTAATTAGAGGATATAATTAAAAAAATTGCATCGAAAACTAAATGCAACACGTACTTTTGGTAAAAAAAAGTAACACAAATTTGCAGAGACTTAAATCGTGCTTGCAAAACTTTAAAAATAATTAGAGAAAAAGTAAAATTTATGTATTAAAGCGACATGAATGAACATTGTAGAAATGAAAATTTGAATCCGTCTATTAAGATTACAGTGTCAAACTCTTACCACTATGAGATTTCTTTTTTAAGGTTCAATAAAATCTATTTATTTTTTTACCAAGCATTCAATGCATGTCCTAATCAACACATTCATGTTCATTTTATTTTCCTTTTCATTGATGTCAAAATCATGTAAGATGCAATTGGTGTATATAGGTTTTTTCCAAGCAAGTACAATAGAGAAATAAAGTCATTGAAGATGGAAGTGGAGAGATTATTAATGGAAATAATACAAAGCAGAAAAGATTGTGTTGAGATTGGAAGAAGCAATTCTTATGGGAATGATTTGTTGGGTATACTATTGAATGAGATGCAGAAGAAGGAAACTAGCTTAAATTTGCAATTAGTGATGGATGAATGCAAAACATTTTTCTTTTCTGGACATGAAACTACAGCACTTTTACTCACTTGGACGGTTATGTTACTGGCAAGTAATCCATCTTGGCAAGAAAAAGTTAGAGCTGAGGTTAAAAGGGTATGCAATGGAGGAATTCCCTCTTTGGATAAACTCTCCAAGCTCACTACGGTAAGTAATTAACAAAATCTTCTTAAAAAAAAAGTAATTAACAAAATCTTCTTGTTTTAAATGAATAAAAGAAAAGGTGCGATCATATCATATCATGAACTAATACACCGGATCTTATTCGAACTTCACAGTTAAGCGTGCTTAAGCGAGAGTACCTCGATAATCTTAACACACGCTTCAAAATTTTTAAAGCACTAGTCCTTGTAGTTGTGCATTAGTGATATCTTTAAAAGCAAAACATAAAAATACTTCATAGTTTATTTGATTCTTTATAACTTCTCCCTAATATGAATGTGAAAGCTTTTATTTTTTTAATTTACACTTACAAGAGAAGAAAGAGTCGTACAAAAAAAAAAGTCATATTACACTATTTTTTAAGTTATGAGGGACAAGTGGCGGGTTTGGTCAAATTTTGGTATCCAATATTCTCATGCACATTATACAATCATTTTCTACGATTTGTTTTTACTTTTATTTTACAATTGTTTTACTTTTAGAAGTGTTAAGTACGTAATTCTCTTCATTACTTCAAAAAAAATATTGTGTAACTCAGTTAATAGAGACATTGTATTATATACAGAGGTTATGGTTTTTCTAACCACTTGAACAAAAAAAGTAATTTCTTCATCTCTTAAAAAATAATTCTCTTCATGAAACCTATACATTAAAAATAAGTCTTACTTGCACACAAATACAAATAAAAAATGTTTAAAACCGTTGACACTTTTCCCCATTTTATATTGGTGTTATATGGTAGTGTAAGTTTAGGCTATAGTATTTCACCTAAAAGCCTAATCAATCAAAAGATCCTAGACTTTTAATTAATTAAGTTATTATCAGCACGATGTTTAGAAAAGACAGTTTGGAAATATTTTAGTTTAACCTAGATATGTATGTTTTGAGAAAAAAACAAAAAATATGATTTGCTTTTTAAAAACAAAATTAAACTATGATTTATTCAGCTATCATCTTTGCACTCGTGTGTAGCTGGTGTCGTTTAGAATAATATATCAATATTATTATCATGGTTATCTTTCTTTTTAGAGGGACCCAAGTGCACAAAAGGTAAAAGATATTTGTTCAAGTTCTGAATAACGATACAACCATACTTTTATGAGAAGAAAAAACATGTATCATATCATAGGAAAAGAGAACAAAAGGAAAATGATTTGACCTAATCACTCAACATAGTGAGATATATTTATATCACCTTAAAAACAATATATATTATATTTTTTTAACAAATAACGGTTTGGAGTTCGAACTATAATCTTTATATATATTACGCAATGTCTCTATCAACTGAGATAAACTAACGAAGATATATATTATATTTTTTGTCGACAGAACTATATTATAATATATAATCTAACCAATTTATTATTATTTACTTTTGCAGTTGCATATGGTAATCAACGAGTCATTGAGGCTCTATCCTCCGGCATCTGTACTCCCTAGAATGGCCTTTGAAGACATAATATTGGGTGACCTTTACATCCCTAAAGGGTTATCAATATGGATTCCTGTGTTGGCAATTCATCATAGTGAAAAACTATGGGGTAAAGATGCAAATGAATTCAATCCAGAGAGGTTTACTTCAAAATCATTCATTCCTGGCCGTTTTTTACCATTTGCTTTTGGCCCAAGAAATTGTGTTGGACAAACATTTGCCTTAATGGAAGCTAAAATTATATTAGCAATGTTAATCTCTCGATTTAGCTTCACAATTTCGGATAATTACCGTCACGCACCCGTGGTTGTGCTCACAATTAAGCCCAAGCATGGGGTTCAAATTTGTTTGAAGTCGCTGGAGACATGA

Protein sequence

>MS.gene76900.t1

MEMQGVRGPKPCFFTGNILDMASLVSKSTSQDMKTISHDIVGRLLPHFVLWSSQFGKRYIYWNGPEPRLCLTETELIKEFLSKYSTVSGKSWLQKQGSKHFIGEGVLMANGENWYHQRHIVAPAFMGDRLKSYAGHMVECTKEMLESLQKGLECGQSEVEIGEYMAKLTADIISRTEFGTSYQKGRKIFHLLTVLQTLCAQASRHLCFPGSRFFPSKYNREIKSLKMEVERLLMEIIQSRKDCVEIGRSNSYGNDLLGILLNEMQKKETSLNLQLVMDECKTFFFSGHETTALLLTWTVMLLASNPSWQEKVRAEVKRVCNGGIPSLDKLSKLTTLHMVINESLRLYPPASVLPRMAFEDIILGDLYIPKGLSIWIPVLAIHHSEKLWGKDANEFNPERFTSKSFIPGRFLPFAFGPRNCVGQTFALMEAKIILAMLISRFSFTISDNYRHAPVVVLTIKPKHGVQICLKSLET