Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98953.t1 | KEH40572.1 | 96.8 | 686 | 19 | 1 | 28 | 713 | 1 | 683 | 0.00E+00 | 1316.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98953.t1 | Q15024 | 37.0 | 281 | 172 | 1 | 429 | 709 | 4 | 279 | 6.8e-48 | 193.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98953.t1 | A0A072VFI7 | 96.8 | 686 | 19 | 1 | 28 | 713 | 1 | 683 | 0.0e+00 | 1316.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049207 | MS.gene98953 | 0.832138 | 1.12E-55 | -1.69E-46 |
| MS.gene049254 | MS.gene98953 | 0.806495 | 8.00E-50 | -1.69E-46 |
| MS.gene049343 | MS.gene98953 | 0.814634 | 1.39E-51 | -1.69E-46 |
| MS.gene049473 | MS.gene98953 | 0.804525 | 2.07E-49 | -1.69E-46 |
| MS.gene049666 | MS.gene98953 | 0.842618 | 2.32E-58 | -1.69E-46 |
| MS.gene049824 | MS.gene98953 | 0.84962 | 2.88E-60 | -1.69E-46 |
| MS.gene049825 | MS.gene98953 | 0.856543 | 3.00E-62 | -1.69E-46 |
| MS.gene049850 | MS.gene98953 | 0.824939 | 6.15E-54 | -1.69E-46 |
| MS.gene049873 | MS.gene98953 | 0.853361 | 2.51E-61 | -1.69E-46 |
| MS.gene050303 | MS.gene98953 | 0.842109 | 3.16E-58 | -1.69E-46 |
| MS.gene050355 | MS.gene98953 | 0.817575 | 3.07E-52 | -1.69E-46 |
| MS.gene050559 | MS.gene98953 | 0.805136 | 1.54E-49 | -1.69E-46 |
| MS.gene050885 | MS.gene98953 | 0.814877 | 1.23E-51 | -1.69E-46 |
| MS.gene051247 | MS.gene98953 | 0.824177 | 9.30E-54 | -1.69E-46 |
| MS.gene05134 | MS.gene98953 | 0.810446 | 1.15E-50 | -1.69E-46 |
| MS.gene051363 | MS.gene98953 | 0.802729 | 4.89E-49 | -1.69E-46 |
| MS.gene051574 | MS.gene98953 | 0.848681 | 5.25E-60 | -1.69E-46 |
| MS.gene051594 | MS.gene98953 | 0.804911 | 1.72E-49 | -1.69E-46 |
| MS.gene051700 | MS.gene98953 | 0.824524 | 7.70E-54 | -1.69E-46 |
| MS.gene051720 | MS.gene98953 | 0.807894 | 4.04E-50 | -1.69E-46 |
| MS.gene051744 | MS.gene98953 | 0.842542 | 2.43E-58 | -1.69E-46 |
| MS.gene051791 | MS.gene98953 | 0.804921 | 1.71E-49 | -1.69E-46 |
| MS.gene05188 | MS.gene98953 | 0.812401 | 4.32E-51 | -1.69E-46 |
| MS.gene051957 | MS.gene98953 | 0.801575 | 8.44E-49 | -1.69E-46 |
| MS.gene051975 | MS.gene98953 | 0.809696 | 1.67E-50 | -1.69E-46 |
| MS.gene052519 | MS.gene98953 | 0.8287 | 7.77E-55 | -1.69E-46 |
| MS.gene052582 | MS.gene98953 | 0.855861 | 4.75E-62 | -1.69E-46 |
| MS.gene052584 | MS.gene98953 | 0.868843 | 4.83E-66 | -1.69E-46 |
| MS.gene052773 | MS.gene98953 | 0.805914 | 1.06E-49 | -1.69E-46 |
| MS.gene052867 | MS.gene98953 | 0.802434 | 5.62E-49 | -1.69E-46 |
| MS.gene053006 | MS.gene98953 | 0.803336 | 3.66E-49 | -1.69E-46 |
| MS.gene053054 | MS.gene98953 | -0.806094 | 9.72E-50 | -1.69E-46 |
| MS.gene053080 | MS.gene98953 | 0.828063 | 1.11E-54 | -1.69E-46 |
| MS.gene053122 | MS.gene98953 | 0.825757 | 3.94E-54 | -1.69E-46 |
| MS.gene053195 | MS.gene98953 | 0.813178 | 2.92E-51 | -1.69E-46 |
| MS.gene053226 | MS.gene98953 | 0.884124 | 2.51E-71 | -1.69E-46 |
| MS.gene053294 | MS.gene98953 | 0.804087 | 2.56E-49 | -1.69E-46 |
| MS.gene05365 | MS.gene98953 | 0.801233 | 9.92E-49 | -1.69E-46 |
| MS.gene053995 | MS.gene98953 | 0.807274 | 5.47E-50 | -1.69E-46 |
| MS.gene054651 | MS.gene98953 | 0.821585 | 3.73E-53 | -1.69E-46 |
| MS.gene054657 | MS.gene98953 | 0.816858 | 4.45E-52 | -1.69E-46 |
| MS.gene054775 | MS.gene98953 | 0.816279 | 6.00E-52 | -1.69E-46 |
| MS.gene054967 | MS.gene98953 | 0.803406 | 3.54E-49 | -1.69E-46 |
| MS.gene055166 | MS.gene98953 | 0.835147 | 1.99E-56 | -1.69E-46 |
| MS.gene055512 | MS.gene98953 | 0.821028 | 5.02E-53 | -1.69E-46 |
| MS.gene055586 | MS.gene98953 | 0.824029 | 1.01E-53 | -1.69E-46 |
| MS.gene055589 | MS.gene98953 | 0.80725 | 5.54E-50 | -1.69E-46 |
| MS.gene055694 | MS.gene98953 | 0.808278 | 3.35E-50 | -1.69E-46 |
| MS.gene055778 | MS.gene98953 | 0.825077 | 5.71E-54 | -1.69E-46 |
| MS.gene055808 | MS.gene98953 | 0.867974 | 9.21E-66 | -1.69E-46 |
| MS.gene056050 | MS.gene98953 | 0.821028 | 5.02E-53 | -1.69E-46 |
| MS.gene056091 | MS.gene98953 | 0.830803 | 2.39E-55 | -1.69E-46 |
| MS.gene056215 | MS.gene98953 | 0.811946 | 5.43E-51 | -1.69E-46 |
| MS.gene056366 | MS.gene98953 | 0.831377 | 1.73E-55 | -1.69E-46 |
| MS.gene056403 | MS.gene98953 | 0.81847 | 1.93E-52 | -1.69E-46 |
| MS.gene05659 | MS.gene98953 | 0.800227 | 1.59E-48 | -1.69E-46 |
| MS.gene056605 | MS.gene98953 | 0.800053 | 1.73E-48 | -1.69E-46 |
| MS.gene056631 | MS.gene98953 | 0.805009 | 1.64E-49 | -1.69E-46 |
| MS.gene05689 | MS.gene98953 | 0.810701 | 1.01E-50 | -1.69E-46 |
| MS.gene057060 | MS.gene98953 | 0.841846 | 3.71E-58 | -1.69E-46 |
| MS.gene057208 | MS.gene98953 | 0.805569 | 1.25E-49 | -1.69E-46 |
| MS.gene057314 | MS.gene98953 | 0.826446 | 2.70E-54 | -1.69E-46 |
| MS.gene057555 | MS.gene98953 | 0.802015 | 6.85E-49 | -1.69E-46 |
| MS.gene057693 | MS.gene98953 | 0.818597 | 1.80E-52 | -1.69E-46 |
| MS.gene057705 | MS.gene98953 | 0.803967 | 2.71E-49 | -1.69E-46 |
| MS.gene057915 | MS.gene98953 | 0.825272 | 5.13E-54 | -1.69E-46 |
| MS.gene058037 | MS.gene98953 | 0.8127 | 3.72E-51 | -1.69E-46 |
| MS.gene058085 | MS.gene98953 | 0.807033 | 6.16E-50 | -1.69E-46 |
| MS.gene058216 | MS.gene98953 | 0.80236 | 5.82E-49 | -1.69E-46 |
| MS.gene058548 | MS.gene98953 | 0.804954 | 1.69E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene98953 | 0.840813 | 6.94E-58 | -1.69E-46 |
| MS.gene05950 | MS.gene98953 | 0.834872 | 2.33E-56 | -1.69E-46 |
| MS.gene05953 | MS.gene98953 | 0.819506 | 1.12E-52 | -1.69E-46 |
| MS.gene05954 | MS.gene98953 | 0.870543 | 1.35E-66 | -1.69E-46 |
| MS.gene059625 | MS.gene98953 | 0.8251 | 5.63E-54 | -1.69E-46 |
| MS.gene05978 | MS.gene98953 | 0.803052 | 4.19E-49 | -1.69E-46 |
| MS.gene05979 | MS.gene98953 | 0.807952 | 3.93E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene98953 | 0.808749 | 2.66E-50 | -1.69E-46 |
| MS.gene059935 | MS.gene98953 | 0.884237 | 2.28E-71 | -1.69E-46 |
| MS.gene060365 | MS.gene98953 | 0.835342 | 1.77E-56 | -1.69E-46 |
| MS.gene060429 | MS.gene98953 | 0.859479 | 4.02E-63 | -1.69E-46 |
| MS.gene060521 | MS.gene98953 | 0.816669 | 4.91E-52 | -1.69E-46 |
| MS.gene060586 | MS.gene98953 | 0.804666 | 1.94E-49 | -1.69E-46 |
| MS.gene060830 | MS.gene98953 | 0.820633 | 6.19E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98953.t1 | MTR_1g031820 | 96.793 | 686 | 19 | 1 | 28 | 713 | 1 | 683 | 0.0 | 1376 |
| MS.gene98953.t1 | MTR_8g077430 | 88.811 | 286 | 32 | 0 | 428 | 713 | 1 | 286 | 0.0 | 519 |
| MS.gene98953.t1 | MTR_8g077430 | 88.018 | 217 | 26 | 0 | 497 | 713 | 1 | 217 | 7.59e-134 | 394 |
| MS.gene98953.t1 | MTR_3g118420 | 76.667 | 90 | 21 | 0 | 23 | 112 | 3 | 92 | 1.32e-41 | 147 |
| MS.gene98953.t1 | MTR_1g063090 | 31.716 | 268 | 163 | 8 | 431 | 692 | 11 | 264 | 1.19e-28 | 117 |
| MS.gene98953.t1 | MTR_2g019210 | 28.929 | 280 | 180 | 7 | 431 | 704 | 11 | 277 | 1.60e-27 | 115 |
| MS.gene98953.t1 | MTR_2g019210 | 28.929 | 280 | 180 | 7 | 431 | 704 | 11 | 277 | 1.08e-26 | 114 |
| MS.gene98953.t1 | MTR_1g007060 | 29.787 | 282 | 185 | 5 | 437 | 710 | 28 | 304 | 3.11e-20 | 92.4 |
| MS.gene98953.t1 | MTR_1g007060 | 29.960 | 247 | 161 | 4 | 438 | 677 | 29 | 270 | 1.10e-17 | 84.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene98953.t1 | AT3G07750 | 79.720 | 286 | 57 | 1 | 429 | 713 | 1 | 286 | 2.56e-166 | 479 |
| MS.gene98953.t1 | AT3G07750 | 79.720 | 286 | 57 | 1 | 429 | 713 | 1 | 286 | 2.56e-166 | 479 |
| MS.gene98953.t1 | AT5G25500 | 50.000 | 394 | 180 | 7 | 28 | 413 | 32 | 416 | 1.35e-127 | 385 |
| MS.gene98953.t1 | AT3G12990 | 31.086 | 267 | 167 | 5 | 428 | 689 | 8 | 262 | 2.12e-27 | 113 |
| MS.gene98953.t1 | AT3G12990 | 31.086 | 267 | 167 | 5 | 428 | 689 | 8 | 262 | 4.32e-27 | 112 |
| MS.gene98953.t1 | AT3G12990 | 31.086 | 267 | 167 | 5 | 428 | 689 | 8 | 262 | 4.32e-27 | 112 |
| MS.gene98953.t1 | AT3G60500 | 30.712 | 267 | 168 | 7 | 428 | 689 | 8 | 262 | 2.24e-24 | 106 |
| MS.gene98953.t1 | AT3G60500 | 30.337 | 267 | 169 | 7 | 428 | 689 | 8 | 262 | 2.67e-23 | 103 |
| MS.gene98953.t1 | AT3G60500 | 30.337 | 267 | 169 | 7 | 428 | 689 | 8 | 262 | 2.67e-23 | 103 |
| MS.gene98953.t1 | AT3G60500 | 30.337 | 267 | 169 | 7 | 428 | 689 | 8 | 262 | 2.67e-23 | 103 |
| MS.gene98953.t1 | AT3G12990 | 30.622 | 209 | 130 | 4 | 428 | 633 | 8 | 204 | 3.66e-19 | 87.4 |
| MS.gene98953.t1 | AT1G60080 | 28.261 | 276 | 173 | 5 | 437 | 696 | 26 | 292 | 2.53e-18 | 86.7 |
Find 146 sgRNAs with CRISPR-Local
Find 416 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGAACATCTTCCCATTTC+TGG | 0.105835 | 1.4:-16661625 | None:intergenic |
| ACCTATGGTATTCATAATTT+TGG | 0.116551 | 1.4:+16662736 | MS.gene98953:CDS |
| TGCAGTTGATTTGGATTATT+TGG | 0.124181 | 1.4:+16661451 | MS.gene98953:CDS |
| TGGGTCAACTTTATTATCTT+TGG | 0.175781 | 1.4:-16661056 | None:intergenic |
| CTCATTTGTGATTCCTCTTC+AGG | 0.233900 | 1.4:-16666567 | None:intergenic |
| TTTGGATTATTTGGCTTCTC+AGG | 0.311307 | 1.4:+16661460 | MS.gene98953:CDS |
| TTATTACAGTATTACCTCTA+TGG | 0.317225 | 1.4:+16661860 | MS.gene98953:CDS |
| GCAAATGTGGATACAATTAA+TGG | 0.317610 | 1.4:+16661086 | MS.gene98953:CDS |
| TCTCTTGTCCGAGTGTTTAT+CGG | 0.325868 | 1.4:+16661182 | MS.gene98953:CDS |
| TATCCACATTTGCAAGCAAT+TGG | 0.331097 | 1.4:-16661076 | None:intergenic |
| TCCAAGTGTCATTCTTGATA+TGG | 0.333896 | 1.4:+16666665 | MS.gene98953:CDS |
| CAGTTTCTATCTCTATTAAC+AGG | 0.340045 | 1.4:+16666595 | MS.gene98953:CDS |
| TATCGGGTCTCCGTTTGTTC+AGG | 0.340377 | 1.4:+16661199 | MS.gene98953:CDS |
| ATTCTTCTGATTCCCAGAAA+TGG | 0.349988 | 1.4:+16661612 | MS.gene98953:CDS |
| CGACCAATCCATGTTGAAAC+TGG | 0.353287 | 1.4:+16662991 | MS.gene98953:CDS |
| TAGTAATGGCTTGTAGAATT+CGG | 0.361938 | 1.4:+16660913 | None:intergenic |
| AGCTGGAATGAAAGGGCATT+TGG | 0.362554 | 1.4:+16662057 | MS.gene98953:CDS |
| CAACCCTGCACCTCCTCGTT+TGG | 0.362588 | 1.4:-16666640 | None:intergenic |
| TGCTCTTCAACGATGTCTCT+TGG | 0.365642 | 1.4:+16665254 | MS.gene98953:CDS |
| AGGTTACGCAGCATCATATA+TGG | 0.377900 | 1.4:+16661396 | MS.gene98953:CDS |
| TCGTCACTTACGTCAACTTC+TGG | 0.393816 | 1.4:-16666385 | None:intergenic |
| ATGAAGACTTTCCCTTTGTC+AGG | 0.394376 | 1.4:-16663367 | None:intergenic |
| AAAACACTGGGCCACTCATC+TGG | 0.396971 | 1.4:+16661824 | MS.gene98953:CDS |
| TTTCTGCAGTTTGACACATC+TGG | 0.404024 | 1.4:+16666412 | MS.gene98953:CDS |
| AGTAATGGCTTGTAGAATTC+GGG | 0.410188 | 1.4:+16660914 | None:intergenic |
| AAGAACATCTTCCCATTTCT+GGG | 0.411509 | 1.4:-16661624 | None:intergenic |
| ATTTGATGATCTTAGGCAAA+TGG | 0.422479 | 1.4:+16663122 | MS.gene98953:intron |
| CATTCAAGGTGGCATTGCTC+AGG | 0.431527 | 1.4:+16662933 | MS.gene98953:CDS |
| AATAGGGTTCTTAGATATAG+AGG | 0.433740 | 1.4:+16662115 | MS.gene98953:CDS |
| TTCTTCTGATTCCCAGAAAT+GGG | 0.435961 | 1.4:+16661613 | MS.gene98953:CDS |
| CGAGCAGTTAATGAATAAGT+TGG | 0.436047 | 1.4:+16666710 | MS.gene98953:CDS |
| TGTGATAATTACTCTGACTA+AGG | 0.439782 | 1.4:+16666441 | MS.gene98953:CDS |
| GGAGAACAACATTTCATTCA+AGG | 0.439872 | 1.4:+16662919 | MS.gene98953:CDS |
| GCTCTTCAACGATGTCTCTT+GGG | 0.440822 | 1.4:+16665255 | MS.gene98953:CDS |
| CTGCTCCAACACACCACAAA+TGG | 0.442942 | 1.4:-16662090 | None:intergenic |
| AACTTTGACGCTTGGAATAC+CGG | 0.445709 | 1.4:-16666335 | None:intergenic |
| TGTTGGGATCTTTATATTGA+CGG | 0.446236 | 1.4:+16665458 | MS.gene98953:CDS |
| AATCACTCTAGGTTCCCTTT+CGG | 0.446245 | 1.4:-16661294 | None:intergenic |
| ACACAAGTGCAGGCTGAACT+TGG | 0.446246 | 1.4:+16663325 | MS.gene98953:intron |
| ACACAGATCTACTTCAATAT+CGG | 0.452155 | 1.4:-16661891 | None:intergenic |
| CGATAACAGTATTGCTTACA+AGG | 0.452528 | 1.4:+16661760 | MS.gene98953:CDS |
| TTGTCAGGTTGCATTGAGCT+TGG | 0.453846 | 1.4:-16663352 | None:intergenic |
| CTCTTGTCCGAGTGTTTATC+GGG | 0.454494 | 1.4:+16661183 | MS.gene98953:CDS |
| ATTGCATGTCGTAAACATCT+TGG | 0.455700 | 1.4:-16661016 | None:intergenic |
| GGTGTGTTGGAGCAGACAAT+AGG | 0.458874 | 1.4:+16662098 | MS.gene98953:CDS |
| AAGCAGTTGGATCGAGCACT+TGG | 0.459065 | 1.4:+16662010 | MS.gene98953:CDS |
| TGGACTTACGAGGCCATTTG+TGG | 0.462532 | 1.4:+16662077 | MS.gene98953:CDS |
| TGCTAAATATCTACAAATCC+TGG | 0.463188 | 1.4:+16661784 | MS.gene98953:CDS |
| TTGGATTATTTGGCTTCTCA+GGG | 0.472517 | 1.4:+16661461 | MS.gene98953:CDS |
| CTATCTCTATTAACAGGAAA+GGG | 0.476100 | 1.4:+16666601 | MS.gene98953:CDS |
| ATCATGTTGTGTATTTGTGT+TGG | 0.476728 | 1.4:-16661246 | None:intergenic |
| ATCCACATTTGCAAGCAATT+GGG | 0.479746 | 1.4:-16661075 | None:intergenic |
| ATAACCAAACGAGGAGGTGC+AGG | 0.480137 | 1.4:+16666636 | MS.gene98953:CDS |
| CGCTCTAGGTGCTGTCATCA+AGG | 0.481363 | 1.4:+16665514 | MS.gene98953:CDS |
| GTATATTTATATAGGGAAGA+GGG | 0.482364 | 1.4:+16665202 | MS.gene98953:intron |
| ATGTTGTGTATTTGTGTTGG+AGG | 0.484915 | 1.4:-16661243 | None:intergenic |
| TCAGCAGTAACTTTGACGCT+TGG | 0.491144 | 1.4:-16666343 | None:intergenic |
| ATGATCTTAGGCAAATGGTT+CGG | 0.496959 | 1.4:+16663127 | MS.gene98953:intron |
| TTGAAAGCTTCTTCTGCACC+AGG | 0.497079 | 1.4:-16661802 | None:intergenic |
| TCAGATAGTGAGAGGATGGT+TGG | 0.498427 | 1.4:+16661977 | MS.gene98953:CDS |
| TTGCATGTCGTAAACATCTT+GGG | 0.499093 | 1.4:-16661015 | None:intergenic |
| TAGGCTGCTTTGAGCAATAC+CGG | 0.499103 | 1.4:+16666316 | MS.gene98953:intron |
| CGAGGCCATTTGTGGTGTGT+TGG | 0.500443 | 1.4:+16662085 | MS.gene98953:CDS |
| TGTATATTTATATAGGGAAG+AGG | 0.500539 | 1.4:+16665201 | MS.gene98953:intron |
| ACTCCAGTTTCAACATGGAT+TGG | 0.501265 | 1.4:-16662994 | None:intergenic |
| TCAAACGAAGGTACTACATT+GGG | 0.502961 | 1.4:+16661485 | MS.gene98953:CDS |
| AAGTTTGTATGGGAAACAGC+TGG | 0.504294 | 1.4:+16662040 | MS.gene98953:CDS |
| AGTGATTGATTCACTGACTA+AGG | 0.506669 | 1.4:+16661310 | MS.gene98953:CDS |
| ATTAAAGTCGCATGTGGCTA+AGG | 0.506689 | 1.4:+16661691 | MS.gene98953:CDS |
| GTCGCATGTGGCTAAGGTTG+AGG | 0.512828 | 1.4:+16661697 | MS.gene98953:CDS |
| GACTTCAGATAGTGAGAGGA+TGG | 0.512900 | 1.4:+16661973 | MS.gene98953:CDS |
| GGAATGGTGGGTTTATCTCT+AGG | 0.515128 | 1.4:+16662898 | MS.gene98953:intron |
| GGACTTGTTGTCAGTTCAGA+TGG | 0.517057 | 1.4:+16665479 | MS.gene98953:CDS |
| TGGGAAACAGCTGGAATGAA+AGG | 0.517632 | 1.4:+16662049 | MS.gene98953:CDS |
| CAGATAGTGAGAGGATGGTT+GGG | 0.520974 | 1.4:+16661978 | MS.gene98953:CDS |
| GTGTGTTGGAGCAGACAATA+GGG | 0.521939 | 1.4:+16662099 | MS.gene98953:CDS |
| TCTATCTCTATTAACAGGAA+AGG | 0.524743 | 1.4:+16666600 | MS.gene98953:CDS |
| TGTTGCTACCAGGGACTGAC+AGG | 0.527873 | 1.4:+16662709 | MS.gene98953:intron |
| TTGGGTGCTAAAAGTGGAGC+AGG | 0.530873 | 1.4:+16665273 | MS.gene98953:CDS |
| TGTCTCTTGGGTGCTAAAAG+TGG | 0.537968 | 1.4:+16665267 | MS.gene98953:CDS |
| GCTCAATGCAACCTGACAAA+GGG | 0.537976 | 1.4:+16663356 | MS.gene98953:CDS |
| TATTACAGTATTACCTCTAT+GGG | 0.544003 | 1.4:+16661861 | MS.gene98953:CDS |
| GACCCAATTGCTTGCAAATG+TGG | 0.546655 | 1.4:+16661073 | MS.gene98953:CDS |
| GGAAATTTGTTAGACGCTCT+AGG | 0.547273 | 1.4:+16665500 | MS.gene98953:CDS |
| CTGACGCCGACTCAACATCA+TGG | 0.548702 | 1.4:+16661561 | MS.gene98953:CDS |
| GCTCAGGATCTTCGCTGTGA+TGG | 0.551212 | 1.4:+16662949 | MS.gene98953:CDS |
| CATTCTTGATATGGTATCTG+TGG | 0.557275 | 1.4:+16666674 | MS.gene98953:CDS |
| GAATATGCAACCTCAAAAGC+AGG | 0.557617 | 1.4:-16663418 | None:intergenic |
| CCTGTGGGCATACTTTGAAA+CGG | 0.559647 | 1.4:-16661376 | None:intergenic |
| TTAGTCAGAGTAATTATCAC+AGG | 0.560528 | 1.4:-16666439 | None:intergenic |
| TGAAACTGGAGTTATTCCTC+AGG | 0.561714 | 1.4:+16663005 | MS.gene98953:CDS |
| CGTAAACATCTTGGGAAGAG+TGG | 0.562619 | 1.4:-16661007 | None:intergenic |
| GCTTCTCAGGGCTCAAACGA+AGG | 0.563728 | 1.4:+16661473 | MS.gene98953:CDS |
| CAAACGAGGAGGTGCAGGGT+TGG | 0.566265 | 1.4:+16666641 | MS.gene98953:CDS |
| TATATTTATATAGGGAAGAG+GGG | 0.568714 | 1.4:+16665203 | MS.gene98953:intron |
| TTTCAGTAAAACAACCGAAA+GGG | 0.575185 | 1.4:+16661280 | MS.gene98953:CDS |
| TGTGGATGCCACGCCTGAAG+AGG | 0.575584 | 1.4:+16666554 | MS.gene98953:CDS |
| GGACTGACAGGTGACACCTA+TGG | 0.577446 | 1.4:+16662721 | MS.gene98953:CDS |
| GTCAGTGAATCAATCACTCT+AGG | 0.577579 | 1.4:-16661305 | None:intergenic |
| TTTACGACATGCAATGGTAT+CGG | 0.577995 | 1.4:+16661024 | MS.gene98953:CDS |
| TCTCTATTTGCTAGGTTGGG+AGG | 0.581168 | 1.4:+16666523 | MS.gene98953:intron |
| AGAGGTCATTGCCAGTGTGA+AGG | 0.582587 | 1.4:+16663172 | MS.gene98953:CDS |
| GGCTAAGGTTGAGGTCATGA+AGG | 0.583224 | 1.4:+16661706 | MS.gene98953:CDS |
| ACCAAAATTATGAATACCAT+AGG | 0.583328 | 1.4:-16662737 | None:intergenic |
| TGTTTCTGCTCAACAGAGGA+AGG | 0.585615 | 1.4:+16661349 | MS.gene98953:CDS |
| CCGTTTCAAAGTATGCCCAC+AGG | 0.587026 | 1.4:+16661376 | MS.gene98953:CDS |
| GGTTGGGAGGCACTATATTG+TGG | 0.587146 | 1.4:+16666536 | MS.gene98953:intron |
| CTTCATCCATGATGTTGAGT+CGG | 0.589560 | 1.4:-16661567 | None:intergenic |
| CTCAAACGAAGGTACTACAT+TGG | 0.590470 | 1.4:+16661484 | MS.gene98953:CDS |
| TGGGCGTGGTGTGAAGCAGT+TGG | 0.590551 | 1.4:+16661997 | MS.gene98953:CDS |
| TTGTGATTCCTCTTCAGGCG+TGG | 0.591330 | 1.4:-16666562 | None:intergenic |
| ACGCAGCATCATATATGGAC+TGG | 0.593009 | 1.4:+16661401 | MS.gene98953:CDS |
| TATCGGTAACTCTCCCATAG+AGG | 0.594976 | 1.4:-16661874 | None:intergenic |
| TGTGCTGTTGTAGGAATGGT+GGG | 0.595846 | 1.4:+16662886 | MS.gene98953:intron |
| ACCATATCAAGAATGACACT+TGG | 0.596140 | 1.4:-16666666 | None:intergenic |
| GGGAAACAGCTGGAATGAAA+GGG | 0.597117 | 1.4:+16662050 | MS.gene98953:CDS |
| TTGAAGTAGATCTGTGTGGT+GGG | 0.597240 | 1.4:+16661897 | MS.gene98953:CDS |
| AGCTCAATGCAACCTGACAA+AGG | 0.602731 | 1.4:+16663355 | MS.gene98953:CDS |
| AAGATGTTTACGACATGCAA+TGG | 0.607770 | 1.4:+16661018 | MS.gene98953:CDS |
| TAAGGTTGAGGTCATGAAGG+AGG | 0.611559 | 1.4:+16661709 | MS.gene98953:CDS |
| GAATAACTCCAGTTTCAACA+TGG | 0.614523 | 1.4:-16662999 | None:intergenic |
| GTGTGCTGTTGTAGGAATGG+TGG | 0.616982 | 1.4:+16662885 | MS.gene98953:intron |
| AACAGGAAAGGGCACATCTG+TGG | 0.618289 | 1.4:+16666612 | MS.gene98953:CDS |
| TGAATAAGCAACCAGATGAG+TGG | 0.633002 | 1.4:-16661835 | None:intergenic |
| AGTGAGAGGATGGTTGGGCG+TGG | 0.634026 | 1.4:+16661983 | MS.gene98953:CDS |
| AAGGTTGAGGTCATGAAGGA+GGG | 0.634710 | 1.4:+16661710 | MS.gene98953:CDS |
| ATAGGGTTCTTAGATATAGA+GGG | 0.638788 | 1.4:+16662116 | MS.gene98953:CDS |
| AGCAGTTGGATCGAGCACTT+GGG | 0.640857 | 1.4:+16662011 | MS.gene98953:CDS |
| TAACCAAACGAGGAGGTGCA+GGG | 0.641504 | 1.4:+16666637 | MS.gene98953:CDS |
| ACTTCTCTAGTTGTCGTCGA+AGG | 0.641982 | 1.4:+16665428 | MS.gene98953:CDS |
| CTTTCAGTAAAACAACCGAA+AGG | 0.649469 | 1.4:+16661279 | MS.gene98953:CDS |
| AACAAGATTAAAGTCGCATG+TGG | 0.652178 | 1.4:+16661685 | MS.gene98953:CDS |
| ATATTTATATAGGGAAGAGG+GGG | 0.653215 | 1.4:+16665204 | MS.gene98953:intron |
| TTGATGTTTCTGCTCAACAG+AGG | 0.657003 | 1.4:+16661345 | MS.gene98953:CDS |
| GAACAACATTTCATTCAAGG+TGG | 0.667860 | 1.4:+16662922 | MS.gene98953:CDS |
| ATTGAAGTAGATCTGTGTGG+TGG | 0.671996 | 1.4:+16661896 | MS.gene98953:CDS |
| ATCTGTGGTATAACCAAACG+AGG | 0.678878 | 1.4:+16666627 | MS.gene98953:CDS |
| AAAGGGCATTTGGACTTACG+AGG | 0.683908 | 1.4:+16662067 | MS.gene98953:CDS |
| TATGATGCTGCGTAACCTGT+GGG | 0.691436 | 1.4:-16661391 | None:intergenic |
| ACGGAGACCCGATAAACACT+CGG | 0.692551 | 1.4:-16661190 | None:intergenic |
| TTCTGCTCAACAGAGGAAGG+TGG | 0.698018 | 1.4:+16661352 | MS.gene98953:CDS |
| ATATGATGCTGCGTAACCTG+TGG | 0.701943 | 1.4:-16661392 | None:intergenic |
| TAGTCAGAGTAATTATCACA+GGG | 0.704592 | 1.4:-16666438 | None:intergenic |
| AGAAGTTGACGTAAGTGACG+AGG | 0.710797 | 1.4:+16666387 | MS.gene98953:CDS |
| TGTGGTATAACCAAACGAGG+AGG | 0.748915 | 1.4:+16666630 | MS.gene98953:CDS |
| GATATTGAAGTAGATCTGTG+TGG | 0.793807 | 1.4:+16661893 | MS.gene98953:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAAAATTAAACAACT+AGG | - | chr1.4:16665864-16665883 | None:intergenic | 10.0% |
| !!! | TATCTTTTGTATATTTATAT+AGG | + | chr1.4:16665194-16665213 | MS.gene98953:intron | 10.0% |
| !!! | TCAATATAATTAGTTTTATT+TGG | + | chr1.4:16665164-16665183 | MS.gene98953:intron | 10.0% |
| !!! | TGATTTTAAATAAAAAACAA+GGG | + | chr1.4:16664303-16664322 | MS.gene98953:intron | 10.0% |
| !!! | TTGATTTTAAATAAAAAACA+AGG | + | chr1.4:16664302-16664321 | MS.gene98953:intron | 10.0% |
| !!! | TTGTTTTTTATTTAAAATCA+AGG | - | chr1.4:16664303-16664322 | None:intergenic | 10.0% |
| !! | AAAACTCCTATTTATAAAAA+AGG | - | chr1.4:16665769-16665788 | None:intergenic | 15.0% |
| !! | AATTCAAATAAGTTGTAAAT+AGG | - | chr1.4:16666001-16666020 | None:intergenic | 15.0% |
| !! | TTAATAAGTTACTAATGTTA+TGG | - | chr1.4:16662553-16662572 | None:intergenic | 15.0% |
| !! | TTATATAAGTATCTTGAATA+GGG | + | chr1.4:16663503-16663522 | MS.gene98953:intron | 15.0% |
| !!! | GAGAATATAAAGATATTTTT+AGG | + | chr1.4:16665954-16665973 | MS.gene98953:intron | 15.0% |
| !!! | GTTTTTTTTTTTTATCAAAG+AGG | - | chr1.4:16666183-16666202 | None:intergenic | 15.0% |
| !!! | TATATGAATAAAAGTACAAA+GGG | - | chr1.4:16662853-16662872 | None:intergenic | 15.0% |
| !! | AAAATGTTTGTTCACTTAAA+AGG | - | chr1.4:16663974-16663993 | None:intergenic | 20.0% |
| !! | AAATGAGATAATGTGAAATT+GGG | + | chr1.4:16662350-16662369 | MS.gene98953:intron | 20.0% |
| !! | AAATGTTTGTTCACTTAAAA+GGG | - | chr1.4:16663973-16663992 | None:intergenic | 20.0% |
| !! | AGAAACTGAAGTTATTAATT+AGG | - | chr1.4:16664352-16664371 | None:intergenic | 20.0% |
| !! | ATATAATGAACAAGACAAAT+TGG | - | chr1.4:16665680-16665699 | None:intergenic | 20.0% |
| !! | CAAAAAGTTATATGAAATAG+CGG | + | chr1.4:16664933-16664952 | MS.gene98953:intron | 20.0% |
| !! | GAAACTGAAGTTATTAATTA+GGG | - | chr1.4:16664351-16664370 | None:intergenic | 20.0% |
| !! | GATAATACAAACATGATATT+GGG | + | chr1.4:16665710-16665729 | MS.gene98953:intron | 20.0% |
| !! | GTCTATAAAAGTAACAAATA+TGG | - | chr1.4:16664069-16664088 | None:intergenic | 20.0% |
| !! | GTTATATAAGTATCTTGAAT+AGG | + | chr1.4:16663502-16663521 | MS.gene98953:intron | 20.0% |
| !! | TATCATGTTTGTATTATCAA+TGG | - | chr1.4:16665708-16665727 | None:intergenic | 20.0% |
| !! | TCTTTATATTCTCAACATTA+TGG | - | chr1.4:16665947-16665966 | None:intergenic | 20.0% |
| !! | TGATAATACAAACATGATAT+TGG | + | chr1.4:16665709-16665728 | MS.gene98953:intron | 20.0% |
| !! | TGTACTATTAAACTAAAGTA+AGG | - | chr1.4:16663241-16663260 | None:intergenic | 20.0% |
| !! | TTGAAAAGAAATAAGAACAT+TGG | - | chr1.4:16665346-16665365 | None:intergenic | 20.0% |
| !! | TTTCATAAACTAACTTGAAA+AGG | - | chr1.4:16666113-16666132 | None:intergenic | 20.0% |
| !!! | AAAAAAGTCAAGAAGTATAA+AGG | - | chr1.4:16662475-16662494 | None:intergenic | 20.0% |
| !!! | AATTATATTGAAGCACTAAA+AGG | - | chr1.4:16665155-16665174 | None:intergenic | 20.0% |
| !!! | ATTCTACTATAGCATTTTTT+GGG | + | chr1.4:16662673-16662692 | MS.gene98953:intron | 20.0% |
| !!! | CTATATGAATAAAAGTACAA+AGG | - | chr1.4:16662854-16662873 | None:intergenic | 20.0% |
| ! | AAAGAAATAAGAACATTGGA+AGG | - | chr1.4:16665342-16665361 | None:intergenic | 25.0% |
| ! | AAGAAATAAGAACATTGGAA+GGG | - | chr1.4:16665341-16665360 | None:intergenic | 25.0% |
| ! | AATAACAAGAACCATATGTT+AGG | - | chr1.4:16666292-16666311 | None:intergenic | 25.0% |
| ! | AATGAGATAATGTGAAATTG+GGG | + | chr1.4:16662351-16662370 | MS.gene98953:intron | 25.0% |
| ! | ACCAAAATTATGAATACCAT+AGG | - | chr1.4:16662740-16662759 | None:intergenic | 25.0% |
| ! | ACTCCTATTTATAAAAAAGG+AGG | - | chr1.4:16665766-16665785 | None:intergenic | 25.0% |
| ! | ATAAAAATGGAAATGATAGC+AGG | + | chr1.4:16661924-16661943 | MS.gene98953:CDS | 25.0% |
| ! | ATAACAAGAACCATATGTTA+GGG | - | chr1.4:16666291-16666310 | None:intergenic | 25.0% |
| ! | CAAATGAGATAATGTGAAAT+TGG | + | chr1.4:16662349-16662368 | MS.gene98953:intron | 25.0% |
| ! | CCACAAAAACAACAAAAATA+AGG | - | chr1.4:16664533-16664552 | None:intergenic | 25.0% |
| ! | CTCAATTTGATCATCAAAAA+TGG | - | chr1.4:16661141-16661160 | None:intergenic | 25.0% |
| ! | CTCCTATTTATAAAAAAGGA+GGG | - | chr1.4:16665765-16665784 | None:intergenic | 25.0% |
| ! | CTTGAAAAAGATGATGATAA+TGG | + | chr1.4:16665576-16665595 | MS.gene98953:intron | 25.0% |
| ! | TAAAAGTAACAAATATGGTG+TGG | - | chr1.4:16664064-16664083 | None:intergenic | 25.0% |
| ! | TATTACAGTATTACCTCTAT+GGG | + | chr1.4:16661861-16661880 | MS.gene98953:CDS | 25.0% |
| ! | TCCTATTTATAAAAAAGGAG+GGG | - | chr1.4:16665764-16665783 | None:intergenic | 25.0% |
| ! | TGAATAAAGAAAAATTCAGC+TGG | - | chr1.4:16663084-16663103 | None:intergenic | 25.0% |
| ! | TTATTACAGTATTACCTCTA+TGG | + | chr1.4:16661860-16661879 | MS.gene98953:CDS | 25.0% |
| ! | TTCTACTGATCATACTATAT+TGG | + | chr1.4:16663300-16663319 | MS.gene98953:intron | 25.0% |
| ! | TTTCACGTAAAATGAAATAG+CGG | - | chr1.4:16664268-16664287 | None:intergenic | 25.0% |
| !! | ACCTATGGTATTCATAATTT+TGG | + | chr1.4:16662736-16662755 | MS.gene98953:CDS | 25.0% |
| !! | GAAATGCTATTCTCATTTTA+TGG | - | chr1.4:16665610-16665629 | None:intergenic | 25.0% |
| !! | GAAGAATTAACAATTTTTGC+AGG | - | chr1.4:16661599-16661618 | None:intergenic | 25.0% |
| !! | GAATAATTTTGCAGTTGATT+TGG | + | chr1.4:16661442-16661461 | MS.gene98953:CDS | 25.0% |
| !! | TTTTCATAAAAGTTGCAAGT+TGG | - | chr1.4:16666136-16666155 | None:intergenic | 25.0% |
| !!! | AATACCATCTTATTTTACAC+TGG | + | chr1.4:16662188-16662207 | MS.gene98953:intron | 25.0% |
| !!! | AATCTGATGCAAAAGTATTA+CGG | - | chr1.4:16665041-16665060 | None:intergenic | 25.0% |
| !!! | ATGGTTCTTGTTATTCTTTT+AGG | + | chr1.4:16666297-16666316 | MS.gene98953:intron | 25.0% |
| !!! | CATTCTACTATAGCATTTTT+TGG | + | chr1.4:16662672-16662691 | MS.gene98953:intron | 25.0% |
| !!! | CCTTATTTTTGTTGTTTTTG+TGG | + | chr1.4:16664530-16664549 | MS.gene98953:intron | 25.0% |
| !!! | CGCTATTTCATATAACTTTT+TGG | - | chr1.4:16664935-16664954 | None:intergenic | 25.0% |
| !!! | GGTTTGCTATAAAAGTATTT+AGG | - | chr1.4:16664711-16664730 | None:intergenic | 25.0% |
| !!! | TAAATAGGAGTTTTGTGAAA+TGG | + | chr1.4:16665775-16665794 | MS.gene98953:intron | 25.0% |
| !!! | TATTCATAATTTTGGTATGG+TGG | + | chr1.4:16662744-16662763 | MS.gene98953:intron | 25.0% |
| !!! | TGGTATTCATAATTTTGGTA+TGG | + | chr1.4:16662741-16662760 | MS.gene98953:intron | 25.0% |
| !!! | TTCTACTATAGCATTTTTTG+GGG | + | chr1.4:16662674-16662693 | MS.gene98953:intron | 25.0% |
| !!! | TTTTAGGATAAGATTGTGTT+TGG | + | chr1.4:16665970-16665989 | MS.gene98953:intron | 25.0% |
| AAGAAGCTTTCAAAAACACT+GGG | + | chr1.4:16661812-16661831 | MS.gene98953:CDS | 30.0% | |
| AATAGGGTTCTTAGATATAG+AGG | + | chr1.4:16662115-16662134 | MS.gene98953:CDS | 30.0% | |
| ACACAGATCTACTTCAATAT+CGG | - | chr1.4:16661894-16661913 | None:intergenic | 30.0% | |
| ACTTTGTGAATGTAATGAAG+TGG | + | chr1.4:16664785-16664804 | MS.gene98953:intron | 30.0% | |
| AGAGAAGATTTAATGAAGAG+AGG | - | chr1.4:16664441-16664460 | None:intergenic | 30.0% | |
| ATAAGTATCTTGAATAGGGA+TGG | + | chr1.4:16663507-16663526 | MS.gene98953:intron | 30.0% | |
| ATAGGGTTCTTAGATATAGA+GGG | + | chr1.4:16662116-16662135 | MS.gene98953:CDS | 30.0% | |
| ATCATGTTGTGTATTTGTGT+TGG | - | chr1.4:16661249-16661268 | None:intergenic | 30.0% | |
| ATGCATAATCTTCAGTATAG+TGG | + | chr1.4:16662648-16662667 | MS.gene98953:intron | 30.0% | |
| CAATCCAGTGTAAAATAAGA+TGG | - | chr1.4:16662195-16662214 | None:intergenic | 30.0% | |
| CAGTTTCTATCTCTATTAAC+AGG | + | chr1.4:16666595-16666614 | MS.gene98953:CDS | 30.0% | |
| CATGTTAAACTATCTTGGAT+TGG | + | chr1.4:16662800-16662819 | MS.gene98953:intron | 30.0% | |
| CCTATTTATAAAAAAGGAGG+GGG | - | chr1.4:16665763-16665782 | None:intergenic | 30.0% | |
| CGCTATTAACTACTATGTTA+CGG | - | chr1.4:16664111-16664130 | None:intergenic | 30.0% | |
| CGTAACATAGTAGTTAATAG+CGG | + | chr1.4:16664109-16664128 | MS.gene98953:intron | 30.0% | |
| CTATCTCTATTAACAGGAAA+GGG | + | chr1.4:16666601-16666620 | MS.gene98953:CDS | 30.0% | |
| CTTCCTTCTTTCATTCTTTA+CGG | + | chr1.4:16664374-16664393 | MS.gene98953:intron | 30.0% | |
| GCAAATGTGGATACAATTAA+TGG | + | chr1.4:16661086-16661105 | MS.gene98953:CDS | 30.0% | |
| GTGAAGTCAATCAAATATTC+TGG | + | chr1.4:16663469-16663488 | MS.gene98953:intron | 30.0% | |
| TAGTCAGAGTAATTATCACA+GGG | - | chr1.4:16666441-16666460 | None:intergenic | 30.0% | |
| TCATACAATCTCTATTTGCT+AGG | + | chr1.4:16666515-16666534 | MS.gene98953:intron | 30.0% | |
| TCTATCTCTATTAACAGGAA+AGG | + | chr1.4:16666600-16666619 | MS.gene98953:CDS | 30.0% | |
| TGCATAATCTTCAGTATAGT+GGG | + | chr1.4:16662649-16662668 | MS.gene98953:intron | 30.0% | |
| TGCTAAATATCTACAAATCC+TGG | + | chr1.4:16661784-16661803 | MS.gene98953:CDS | 30.0% | |
| TGCTTCATGTTAAACTATCT+TGG | + | chr1.4:16662795-16662814 | MS.gene98953:intron | 30.0% | |
| TGGGTCAACTTTATTATCTT+TGG | - | chr1.4:16661059-16661078 | None:intergenic | 30.0% | |
| TGTGATAATTACTCTGACTA+AGG | + | chr1.4:16666441-16666460 | MS.gene98953:CDS | 30.0% | |
| TGTTGGGATCTTTATATTGA+CGG | + | chr1.4:16665458-16665477 | MS.gene98953:CDS | 30.0% | |
| TTAGTCAGAGTAATTATCAC+AGG | - | chr1.4:16666442-16666461 | None:intergenic | 30.0% | |
| TTCACAATGTCATGAAAGAA+TGG | - | chr1.4:16665645-16665664 | None:intergenic | 30.0% | |
| TTGAATTAGTTATCAGTCAG+TGG | + | chr1.4:16662212-16662231 | MS.gene98953:intron | 30.0% | |
| TTGTTTGGCAATTTAATCAC+TGG | + | chr1.4:16664655-16664674 | MS.gene98953:intron | 30.0% | |
| TTTCAGTAAAACAACCGAAA+GGG | + | chr1.4:16661280-16661299 | MS.gene98953:CDS | 30.0% | |
| TTTCCAGTATTATCAAAACG+TGG | + | chr1.4:16663663-16663682 | MS.gene98953:intron | 30.0% | |
| ! | ATCATGAAAGTCGTCAATTT+TGG | + | chr1.4:16662572-16662591 | MS.gene98953:intron | 30.0% |
| ! | ATTTGATGATCTTAGGCAAA+TGG | + | chr1.4:16663122-16663141 | MS.gene98953:intron | 30.0% |
| ! | TGTGGTGGGATTTATAAAAA+TGG | + | chr1.4:16661911-16661930 | MS.gene98953:CDS | 30.0% |
| ! | TTCGTACATTTGATGATCTT+AGG | + | chr1.4:16663115-16663134 | MS.gene98953:intron | 30.0% |
| !! | AAAACAGAGGATGCTTTTTA+GGG | - | chr1.4:16664483-16664502 | None:intergenic | 30.0% |
| !! | AGATGATGATAATGGATTCT+TGG | + | chr1.4:16665584-16665603 | MS.gene98953:intron | 30.0% |
| !! | ATTTTAACAAACCTTCACAC+TGG | - | chr1.4:16663186-16663205 | None:intergenic | 30.0% |
| !! | GTGAAGGTTTGTTAAAATGT+TGG | + | chr1.4:16663188-16663207 | MS.gene98953:intron | 30.0% |
| !! | TGCAGTTGATTTGGATTATT+TGG | + | chr1.4:16661451-16661470 | MS.gene98953:CDS | 30.0% |
| !! | TTTCGGTTGTTTTACTGAAA+GGG | - | chr1.4:16661280-16661299 | None:intergenic | 30.0% |
| !!! | CTCATTTTTTCCTGAACAAA+CGG | - | chr1.4:16661212-16661231 | None:intergenic | 30.0% |
| AAAATCAGGGGAGAAACATT+TGG | - | chr1.4:16662294-16662313 | None:intergenic | 35.0% | |
| AAAGAAAAATTCAGCTGGCT+GGG | - | chr1.4:16663079-16663098 | None:intergenic | 35.0% | |
| AACAAGATTAAAGTCGCATG+TGG | + | chr1.4:16661685-16661704 | MS.gene98953:CDS | 35.0% | |
| AACAATGTCGAGATTATCAC+CGG | - | chr1.4:16664640-16664659 | None:intergenic | 35.0% | |
| AACCAATTGCAAGATCGTTT+GGG | - | chr1.4:16665889-16665908 | None:intergenic | 35.0% | |
| AACTACTATGTTACGGTCTA+TGG | - | chr1.4:16664104-16664123 | None:intergenic | 35.0% | |
| AAGAACATCTTCCCATTTCT+GGG | - | chr1.4:16661627-16661646 | None:intergenic | 35.0% | |
| AAGATGTTTACGACATGCAA+TGG | + | chr1.4:16661018-16661037 | MS.gene98953:CDS | 35.0% | |
| AAGGGAACTTTGCCATAAAA+TGG | - | chr1.4:16663955-16663974 | None:intergenic | 35.0% | |
| AATGTGCTCAAAGACATAAG+TGG | + | chr1.4:16664613-16664632 | MS.gene98953:intron | 35.0% | |
| ACCATATCAAGAATGACACT+TGG | - | chr1.4:16666669-16666688 | None:intergenic | 35.0% | |
| AGAAGTTTGGCAGTAAATGA+AGG | - | chr1.4:16663892-16663911 | None:intergenic | 35.0% | |
| AGAGAATACACAGATGAATG+AGG | - | chr1.4:16662441-16662460 | None:intergenic | 35.0% | |
| AGGAAACTAGGTAACAAATG+TGG | + | chr1.4:16662316-16662335 | MS.gene98953:intron | 35.0% | |
| ATACTTATGCCTAAAACCGA+TGG | + | chr1.4:16662511-16662530 | MS.gene98953:intron | 35.0% | |
| ATAGAGGATGAACAAAACAG+AGG | - | chr1.4:16664496-16664515 | None:intergenic | 35.0% | |
| ATCCACATTTGCAAGCAATT+GGG | - | chr1.4:16661078-16661097 | None:intergenic | 35.0% | |
| ATGATCTTAGGCAAATGGTT+CGG | + | chr1.4:16663127-16663146 | MS.gene98953:intron | 35.0% | |
| ATGTTGTGTATTTGTGTTGG+AGG | - | chr1.4:16661246-16661265 | None:intergenic | 35.0% | |
| ATTCTTCTGATTCCCAGAAA+TGG | + | chr1.4:16661612-16661631 | MS.gene98953:CDS | 35.0% | |
| ATTGCATGTCGTAAACATCT+TGG | - | chr1.4:16661019-16661038 | None:intergenic | 35.0% | |
| ATTTGAAAGGGAACAGAACA+AGG | - | chr1.4:16664035-16664054 | None:intergenic | 35.0% | |
| CAGCTAAAGTGAAGAGTAAT+AGG | - | chr1.4:16663828-16663847 | None:intergenic | 35.0% | |
| CATTCTTGATATGGTATCTG+TGG | + | chr1.4:16666674-16666693 | MS.gene98953:CDS | 35.0% | |
| CATTTACTGCCAAACTTCTT+TGG | + | chr1.4:16663893-16663912 | MS.gene98953:intron | 35.0% | |
| CCAACCAAGAAAAAGTAAGT+GGG | - | chr1.4:16662774-16662793 | None:intergenic | 35.0% | |
| CGAGCAGTTAATGAATAAGT+TGG | + | chr1.4:16666710-16666729 | MS.gene98953:CDS | 35.0% | |
| CGATAACAGTATTGCTTACA+AGG | + | chr1.4:16661760-16661779 | MS.gene98953:CDS | 35.0% | |
| CGATCTTGCAATTGGTTAAA+TGG | + | chr1.4:16665892-16665911 | MS.gene98953:intron | 35.0% | |
| CTATCCGCTATTAACTACTA+TGG | + | chr1.4:16665014-16665033 | MS.gene98953:intron | 35.0% | |
| CTATTACTCTTCACTTTAGC+TGG | + | chr1.4:16663826-16663845 | MS.gene98953:intron | 35.0% | |
| CTTTCAGTAAAACAACCGAA+AGG | + | chr1.4:16661279-16661298 | MS.gene98953:CDS | 35.0% | |
| GAACAACATTTCATTCAAGG+TGG | + | chr1.4:16662922-16662941 | MS.gene98953:CDS | 35.0% | |
| GAACTTTGCCATAAAATGGA+AGG | - | chr1.4:16663951-16663970 | None:intergenic | 35.0% | |
| GAAGAAGCTTTCAAAAACAC+TGG | + | chr1.4:16661811-16661830 | MS.gene98953:CDS | 35.0% | |
| GAATAACTCCAGTTTCAACA+TGG | - | chr1.4:16663002-16663021 | None:intergenic | 35.0% | |
| GATATTGAAGTAGATCTGTG+TGG | + | chr1.4:16661893-16661912 | MS.gene98953:CDS | 35.0% | |
| GGAGAACAACATTTCATTCA+AGG | + | chr1.4:16662919-16662938 | MS.gene98953:CDS | 35.0% | |
| GTGATAATCTCGACATTGTT+TGG | + | chr1.4:16664640-16664659 | MS.gene98953:intron | 35.0% | |
| GTTCTGTTCCCTTTCAAATA+TGG | + | chr1.4:16664036-16664055 | MS.gene98953:intron | 35.0% | |
| TAAAGAAAAATTCAGCTGGC+TGG | - | chr1.4:16663080-16663099 | None:intergenic | 35.0% | |
| TAAAGTGAAGAGTAATAGGC+TGG | - | chr1.4:16663824-16663843 | None:intergenic | 35.0% | |
| TAACCAATTGCAAGATCGTT+TGG | - | chr1.4:16665890-16665909 | None:intergenic | 35.0% | |
| TACACAAACACAACCTTAAC+CGG | + | chr1.4:16666260-16666279 | MS.gene98953:intron | 35.0% | |
| TATCCACATTTGCAAGCAAT+TGG | - | chr1.4:16661079-16661098 | None:intergenic | 35.0% | |
| TCATGAAAGAATGGTCACTT+CGG | - | chr1.4:16665636-16665655 | None:intergenic | 35.0% | |
| TCGTCGAAGGAAAAATTTGT+TGG | + | chr1.4:16665441-16665460 | MS.gene98953:CDS | 35.0% | |
| TCTTGCAATTGGTTAAATGG+AGG | + | chr1.4:16665895-16665914 | MS.gene98953:intron | 35.0% | |
| TTAGAGAAGACCACAAGATT+CGG | - | chr1.4:16665812-16665831 | None:intergenic | 35.0% | |
| TTCTTCTGATTCCCAGAAAT+GGG | + | chr1.4:16661613-16661632 | MS.gene98953:CDS | 35.0% | |
| TTGCATGTCGTAAACATCTT+GGG | - | chr1.4:16661018-16661037 | None:intergenic | 35.0% | |
| TTGGCAATTTAATCACTGGA+AGG | + | chr1.4:16664659-16664678 | MS.gene98953:intron | 35.0% | |
| TTTACGACATGCAATGGTAT+CGG | + | chr1.4:16661024-16661043 | MS.gene98953:CDS | 35.0% | |
| ! | ACAATCTCTATTTGCTAGGT+TGG | + | chr1.4:16666519-16666538 | MS.gene98953:intron | 35.0% |
| ! | AGTGATTGATTCACTGACTA+AGG | + | chr1.4:16661310-16661329 | MS.gene98953:CDS | 35.0% |
| ! | CAATCTCTATTTGCTAGGTT+GGG | + | chr1.4:16666520-16666539 | MS.gene98953:intron | 35.0% |
| ! | CGCTTTTACAGCATTTAATC+AGG | - | chr1.4:16661664-16661683 | None:intergenic | 35.0% |
| ! | CGTCGAAGGAAAAATTTGTT+GGG | + | chr1.4:16665442-16665461 | MS.gene98953:CDS | 35.0% |
| ! | GGAAAAAATGAGACGTGTTT+TGG | + | chr1.4:16661220-16661239 | MS.gene98953:CDS | 35.0% |
| ! | TAAATGGAGGTTTTTGCTCA+TGG | + | chr1.4:16665908-16665927 | MS.gene98953:intron | 35.0% |
| ! | TATCCCGCTATAGCATTTTT+GGG | + | chr1.4:16664972-16664991 | MS.gene98953:intron | 35.0% |
| ! | TCCAAGTGTCATTCTTGATA+TGG | + | chr1.4:16666665-16666684 | MS.gene98953:CDS | 35.0% |
| ! | TTGGATTATTTGGCTTCTCA+GGG | + | chr1.4:16661461-16661480 | MS.gene98953:CDS | 35.0% |
| ! | TTTGGATTATTTGGCTTCTC+AGG | + | chr1.4:16661460-16661479 | MS.gene98953:CDS | 35.0% |
| !! | ACCTAGTTTCCTCTAAAATC+AGG | - | chr1.4:16662308-16662327 | None:intergenic | 35.0% |
| !! | AGTAAAAATTGGTGCTACAG+AGG | + | chr1.4:16663154-16663173 | MS.gene98953:CDS | 35.0% |
| !! | CAAAACAGAGGATGCTTTTT+AGG | - | chr1.4:16664484-16664503 | None:intergenic | 35.0% |
| !! | CCTAGTTTCCTCTAAAATCA+GGG | - | chr1.4:16662307-16662326 | None:intergenic | 35.0% |
| !! | CTAGTTTCCTCTAAAATCAG+GGG | - | chr1.4:16662306-16662325 | None:intergenic | 35.0% |
| !! | CTTTCGGTTGTTTTACTGAA+AGG | - | chr1.4:16661281-16661300 | None:intergenic | 35.0% |
| !! | TAGTAGTTAATAGCGGATAG+CGG | - | chr1.4:16665014-16665033 | None:intergenic | 35.0% |
| !! | TCAAACGAAGGTACTACATT+GGG | + | chr1.4:16661485-16661504 | MS.gene98953:CDS | 35.0% |
| !! | TTCGGTTGTTTTACTGAAAG+GGG | - | chr1.4:16661279-16661298 | None:intergenic | 35.0% |
| !!! | ACATAATCACCATCGGTTTT+AGG | - | chr1.4:16662523-16662542 | None:intergenic | 35.0% |
| !!! | ATTGGGGAAAAGTATTTTGC+TGG | + | chr1.4:16662367-16662386 | MS.gene98953:intron | 35.0% |
| !!! | CCCCCTCCTTTTTTATAAAT+AGG | + | chr1.4:16665760-16665779 | MS.gene98953:intron | 35.0% |
| !!! | GGGAACATGTATTTTTTGCA+CGG | + | chr1.4:16662136-16662155 | MS.gene98953:CDS | 35.0% |
| !!! | TGGGCTTTTCAAGTTTGTAT+GGG | + | chr1.4:16662030-16662049 | MS.gene98953:CDS | 35.0% |
| !!! | TTGGGCTTTTCAAGTTTGTA+TGG | + | chr1.4:16662029-16662048 | MS.gene98953:CDS | 35.0% |
| !!! | TTTTGACTTCAGATAGTGAG+AGG | + | chr1.4:16661969-16661988 | MS.gene98953:CDS | 35.0% |
| AAACACAACCTTAACCGGAA+AGG | + | chr1.4:16666265-16666284 | MS.gene98953:intron | 40.0% | |
| AACTTTGACGCTTGGAATAC+CGG | - | chr1.4:16666338-16666357 | None:intergenic | 40.0% | |
| AAGAAAAATTCAGCTGGCTG+GGG | - | chr1.4:16663078-16663097 | None:intergenic | 40.0% | |
| AAGCATTTGTGCAAGTGCTA+GGG | + | chr1.4:16666033-16666052 | MS.gene98953:intron | 40.0% | |
| AAGTTTGTATGGGAAACAGC+TGG | + | chr1.4:16662040-16662059 | MS.gene98953:CDS | 40.0% | |
| AATAGGGATGGAAATGAGTC+GGG | + | chr1.4:16663519-16663538 | MS.gene98953:intron | 40.0% | |
| AATCACTCTAGGTTCCCTTT+CGG | - | chr1.4:16661297-16661316 | None:intergenic | 40.0% | |
| ACTCCAGTTTCAACATGGAT+TGG | - | chr1.4:16662997-16663016 | None:intergenic | 40.0% | |
| ACTGCACCATAGCATGTATA+GGG | - | chr1.4:16663734-16663753 | None:intergenic | 40.0% | |
| AGGTTACGCAGCATCATATA+TGG | + | chr1.4:16661396-16661415 | MS.gene98953:CDS | 40.0% | |
| ATCCCAAACGATCTTGCAAT+TGG | + | chr1.4:16665884-16665903 | MS.gene98953:intron | 40.0% | |
| ATCTGTGGTATAACCAAACG+AGG | + | chr1.4:16666627-16666646 | MS.gene98953:CDS | 40.0% | |
| ATGAAGACTTTCCCTTTGTC+AGG | - | chr1.4:16663370-16663389 | None:intergenic | 40.0% | |
| ATGCAAACCTCTCAGCAATT+TGG | - | chr1.4:16664751-16664770 | None:intergenic | 40.0% | |
| ATGTAATGAAGTGGCAGACT+TGG | + | chr1.4:16664794-16664813 | MS.gene98953:intron | 40.0% | |
| ATTAAAGTCGCATGTGGCTA+AGG | + | chr1.4:16661691-16661710 | MS.gene98953:CDS | 40.0% | |
| ATTGAAGTAGATCTGTGTGG+TGG | + | chr1.4:16661896-16661915 | MS.gene98953:CDS | 40.0% | |
| ATTGATTGAACACCAGAAGC+TGG | - | chr1.4:16664688-16664707 | None:intergenic | 40.0% | |
| CAAGAACATCTTCCCATTTC+TGG | - | chr1.4:16661628-16661647 | None:intergenic | 40.0% | |
| CCAAGAAAAAGTAAGTGGGA+TGG | - | chr1.4:16662770-16662789 | None:intergenic | 40.0% | |
| CGGTCCATAGTAGTTAATAG+CGG | - | chr1.4:16665021-16665040 | None:intergenic | 40.0% | |
| CTCATTTGTGATTCCTCTTC+AGG | - | chr1.4:16666570-16666589 | None:intergenic | 40.0% | |
| CTTCATCCATGATGTTGAGT+CGG | - | chr1.4:16661570-16661589 | None:intergenic | 40.0% | |
| CTTTGCCATAAAATGGAAGG+CGG | - | chr1.4:16663948-16663967 | None:intergenic | 40.0% | |
| GAATAGGGATGGAAATGAGT+CGG | + | chr1.4:16663518-16663537 | MS.gene98953:intron | 40.0% | |
| GAATATGCAACCTCAAAAGC+AGG | - | chr1.4:16663421-16663440 | None:intergenic | 40.0% | |
| GCCAACCAAGAAAAAGTAAG+TGG | - | chr1.4:16662775-16662794 | None:intergenic | 40.0% | |
| GGTTCGGCAAGAGTAAAAAT+TGG | + | chr1.4:16663143-16663162 | MS.gene98953:CDS | 40.0% | |
| GTAAGCACGATCTTCACATT+AGG | - | chr1.4:16665310-16665329 | None:intergenic | 40.0% | |
| GTCAGTGAATCAATCACTCT+AGG | - | chr1.4:16661308-16661327 | None:intergenic | 40.0% | |
| GTTTGATTGAACACCAGAAG+CGG | - | chr1.4:16664577-16664596 | None:intergenic | 40.0% | |
| TAGAGAAGACCACAAGATTC+GGG | - | chr1.4:16665811-16665830 | None:intergenic | 40.0% | |
| TCTCGACACATAATCACCAT+CGG | - | chr1.4:16662530-16662549 | None:intergenic | 40.0% | |
| TCTCTTGTCCGAGTGTTTAT+CGG | + | chr1.4:16661182-16661201 | MS.gene98953:CDS | 40.0% | |
| TGAAACTGGAGTTATTCCTC+AGG | + | chr1.4:16663005-16663024 | MS.gene98953:CDS | 40.0% | |
| TGAATAAGCAACCAGATGAG+TGG | - | chr1.4:16661838-16661857 | None:intergenic | 40.0% | |
| TGCAAACCTCTCAGCAATTT+GGG | - | chr1.4:16664750-16664769 | None:intergenic | 40.0% | |
| TGGTATTGCAATGCTATCAC+TGG | - | chr1.4:16662175-16662194 | None:intergenic | 40.0% | |
| TTGAAGTAGATCTGTGTGGT+GGG | + | chr1.4:16661897-16661916 | MS.gene98953:CDS | 40.0% | |
| TTGAAGTTACCCGAATCTTG+TGG | + | chr1.4:16665799-16665818 | MS.gene98953:intron | 40.0% | |
| TTGATTGAACACCAGAAGCT+GGG | - | chr1.4:16664687-16664706 | None:intergenic | 40.0% | |
| TTGGGATCTGTCTCAATTTC+TGG | - | chr1.4:16664732-16664751 | None:intergenic | 40.0% | |
| TTTCTGCAGTTTGACACATC+TGG | + | chr1.4:16666412-16666431 | MS.gene98953:CDS | 40.0% | |
| ! | AAAGCATTTGTGCAAGTGCT+AGG | + | chr1.4:16666032-16666051 | MS.gene98953:intron | 40.0% |
| ! | AGACTTGGTTACAACTCAGT+TGG | + | chr1.4:16664809-16664828 | MS.gene98953:intron | 40.0% |
| ! | AGCAGGTTTTGCTTGTCTAT+GGG | + | chr1.4:16661941-16661960 | MS.gene98953:CDS | 40.0% |
| ! | AGTCATCAAAGCATTACCTG+AGG | - | chr1.4:16663024-16663043 | None:intergenic | 40.0% |
| ! | ATCCCGCTATAGCATTTTTG+GGG | + | chr1.4:16664973-16664992 | MS.gene98953:intron | 40.0% |
| ! | CAGGTAATGCTTTGATGACT+TGG | + | chr1.4:16663024-16663043 | MS.gene98953:intron | 40.0% |
| ! | CTATCCCGCTATAGCATTTT+TGG | + | chr1.4:16664971-16664990 | MS.gene98953:intron | 40.0% |
| ! | GACTTGGTTACAACTCAGTT+GGG | + | chr1.4:16664810-16664829 | MS.gene98953:intron | 40.0% |
| ! | GAGAACACAGCTGTTATTTG+TGG | - | chr1.4:16665092-16665111 | None:intergenic | 40.0% |
| ! | TACTGGAAGTCTAGAATCGA+AGG | - | chr1.4:16663800-16663819 | None:intergenic | 40.0% |
| ! | TAGCAGGTTTTGCTTGTCTA+TGG | + | chr1.4:16661940-16661959 | MS.gene98953:CDS | 40.0% |
| ! | TATATTGGCTACACAAGTGC+AGG | + | chr1.4:16663315-16663334 | MS.gene98953:intron | 40.0% |
| ! | TGTTTCTCCCCTGATTTTAG+AGG | + | chr1.4:16662296-16662315 | MS.gene98953:intron | 40.0% |
| ! | TTGATGTTTCTGCTCAACAG+AGG | + | chr1.4:16661345-16661364 | MS.gene98953:CDS | 40.0% |
| ! | TTTTGTGGACAACACAGTCA+TGG | + | chr1.4:16664545-16664564 | MS.gene98953:intron | 40.0% |
| !! | AGTCAAGCTTTGAGTTGAAC+TGG | - | chr1.4:16663581-16663600 | None:intergenic | 40.0% |
| !! | CCCTGATTTTAGAGGAAACT+AGG | + | chr1.4:16662304-16662323 | MS.gene98953:intron | 40.0% |
| !! | CTCAAACGAAGGTACTACAT+TGG | + | chr1.4:16661484-16661503 | MS.gene98953:CDS | 40.0% |
| !! | GGAAATTTGTTAGACGCTCT+AGG | + | chr1.4:16665500-16665519 | MS.gene98953:CDS | 40.0% |
| !! | GTGTGGTGCCATATTTGAAA+GGG | - | chr1.4:16664047-16664066 | None:intergenic | 40.0% |
| !! | TCCTGAATTTGAGTTGCCAT+TGG | - | chr1.4:16662240-16662259 | None:intergenic | 40.0% |
| !! | TGGCCACGTTTTGATAATAC+TGG | - | chr1.4:16663669-16663688 | None:intergenic | 40.0% |
| !!! | CCATCCCACTTACTTTTTCT+TGG | + | chr1.4:16662767-16662786 | MS.gene98953:intron | 40.0% |
| !!! | CCCACTTACTTTTTCTTGGT+TGG | + | chr1.4:16662771-16662790 | MS.gene98953:intron | 40.0% |
| AAAACCGCTATGCAGTGTTG+CGG | - | chr1.4:16664234-16664253 | None:intergenic | 45.0% | |
| AAGCCACCCTATACATGCTA+TGG | + | chr1.4:16663725-16663744 | MS.gene98953:intron | 45.0% | |
| AAGGTTGAGGTCATGAAGGA+GGG | + | chr1.4:16661710-16661729 | MS.gene98953:CDS | 45.0% | |
| ACAGATCCCAAATTGCTGAG+AGG | + | chr1.4:16664741-16664760 | MS.gene98953:intron | 45.0% | |
| ACCATATGTTAGGGCCTTTC+CGG | - | chr1.4:16666282-16666301 | None:intergenic | 45.0% | |
| ACCCCCAAAAATGCTATAGC+GGG | - | chr1.4:16664978-16664997 | None:intergenic | 45.0% | |
| ACGCAGCATCATATATGGAC+TGG | + | chr1.4:16661401-16661420 | MS.gene98953:CDS | 45.0% | |
| ACTTCTCTAGTTGTCGTCGA+AGG | + | chr1.4:16665428-16665447 | MS.gene98953:CDS | 45.0% | |
| AGAAGTTGACGTAAGTGACG+AGG | + | chr1.4:16666387-16666406 | MS.gene98953:CDS | 45.0% | |
| AGCATTTGTGCAAGTGCTAG+GGG | + | chr1.4:16666034-16666053 | MS.gene98953:intron | 45.0% | |
| AGCTCAATGCAACCTGACAA+AGG | + | chr1.4:16663355-16663374 | MS.gene98953:CDS | 45.0% | |
| AGTTAATAGCGGCGCTATAG+CGG | + | chr1.4:16664120-16664139 | MS.gene98953:intron | 45.0% | |
| ATATGATGCTGCGTAACCTG+TGG | - | chr1.4:16661395-16661414 | None:intergenic | 45.0% | |
| ATGTTACGGTCTATGGCAGA+TGG | - | chr1.4:16664097-16664116 | None:intergenic | 45.0% | |
| CACTGCACCATAGCATGTAT+AGG | - | chr1.4:16663735-16663754 | None:intergenic | 45.0% | |
| CAGATAGTGAGAGGATGGTT+GGG | + | chr1.4:16661978-16661997 | MS.gene98953:CDS | 45.0% | |
| CAGATGCGTACAGATCTGAA+AGG | - | chr1.4:16664402-16664421 | None:intergenic | 45.0% | |
| CGACCAATCCATGTTGAAAC+TGG | + | chr1.4:16662991-16663010 | MS.gene98953:CDS | 45.0% | |
| CGTAAACATCTTGGGAAGAG+TGG | - | chr1.4:16661010-16661029 | None:intergenic | 45.0% | |
| CTCTTGTCCGAGTGTTTATC+GGG | + | chr1.4:16661183-16661202 | MS.gene98953:CDS | 45.0% | |
| GACCCAATTGCTTGCAAATG+TGG | + | chr1.4:16661073-16661092 | MS.gene98953:CDS | 45.0% | |
| GACCCCCAAAAATGCTATAG+CGG | - | chr1.4:16664979-16664998 | None:intergenic | 45.0% | |
| GACTAATCAGCTGAGGAGTT+CGG | - | chr1.4:16663868-16663887 | None:intergenic | 45.0% | |
| GACTTCAGATAGTGAGAGGA+TGG | + | chr1.4:16661973-16661992 | MS.gene98953:CDS | 45.0% | |
| GCAACAACGCCAAAGAAGTT+TGG | - | chr1.4:16663905-16663924 | None:intergenic | 45.0% | |
| GCCAATGGCAACTCAAATTC+AGG | + | chr1.4:16662236-16662255 | MS.gene98953:intron | 45.0% | |
| GCGCCGTAAAGAATGAAAGA+AGG | - | chr1.4:16664380-16664399 | None:intergenic | 45.0% | |
| GCTCAAAGACATAAGTGGAC+CGG | + | chr1.4:16664618-16664637 | MS.gene98953:intron | 45.0% | |
| GCTCAATGCAACCTGACAAA+GGG | + | chr1.4:16663356-16663375 | MS.gene98953:CDS | 45.0% | |
| GCTCTTCAACGATGTCTCTT+GGG | + | chr1.4:16665255-16665274 | MS.gene98953:CDS | 45.0% | |
| GGAAACAGAGAGCAGAATAG+AGG | - | chr1.4:16664512-16664531 | None:intergenic | 45.0% | |
| GGGAAACAGCTGGAATGAAA+GGG | + | chr1.4:16662050-16662069 | MS.gene98953:CDS | 45.0% | |
| GTACCATCATTGCACTAGCA+TGG | - | chr1.4:16663689-16663708 | None:intergenic | 45.0% | |
| GTGTGTTGGAGCAGACAATA+GGG | + | chr1.4:16662099-16662118 | MS.gene98953:CDS | 45.0% | |
| TAAGGTTGAGGTCATGAAGG+AGG | + | chr1.4:16661709-16661728 | MS.gene98953:CDS | 45.0% | |
| TATCGGTAACTCTCCCATAG+AGG | - | chr1.4:16661877-16661896 | None:intergenic | 45.0% | |
| TATCTCATAACGCTACGCCA+TGG | - | chr1.4:16664196-16664215 | None:intergenic | 45.0% | |
| TATGATGCTGCGTAACCTGT+GGG | - | chr1.4:16661394-16661413 | None:intergenic | 45.0% | |
| TCAGATAGTGAGAGGATGGT+TGG | + | chr1.4:16661977-16661996 | MS.gene98953:CDS | 45.0% | |
| TCAGCAGTAACTTTGACGCT+TGG | - | chr1.4:16666346-16666365 | None:intergenic | 45.0% | |
| TCGTCACTTACGTCAACTTC+TGG | - | chr1.4:16666388-16666407 | None:intergenic | 45.0% | |
| TGAAGGTGACTAATCAGCTG+AGG | - | chr1.4:16663875-16663894 | None:intergenic | 45.0% | |
| TGCTCTTCAACGATGTCTCT+TGG | + | chr1.4:16665254-16665273 | MS.gene98953:CDS | 45.0% | |
| TGGGAAACAGCTGGAATGAA+AGG | + | chr1.4:16662049-16662068 | MS.gene98953:CDS | 45.0% | |
| TGTCTCTTGGGTGCTAAAAG+TGG | + | chr1.4:16665267-16665286 | MS.gene98953:CDS | 45.0% | |
| TGTGGTATAACCAAACGAGG+AGG | + | chr1.4:16666630-16666649 | MS.gene98953:CDS | 45.0% | |
| TTGAAAGCTTCTTCTGCACC+AGG | - | chr1.4:16661805-16661824 | None:intergenic | 45.0% | |
| ! | AACGTGTGCTGTTGTAGGAA+TGG | + | chr1.4:16662882-16662901 | MS.gene98953:intron | 45.0% |
| ! | AAGAGTAATAGGCTGGCTAC+TGG | - | chr1.4:16663817-16663836 | None:intergenic | 45.0% |
| ! | ACAGAGAGCTGCAGTCTTTT+TGG | - | chr1.4:16660970-16660989 | None:intergenic | 45.0% |
| ! | CAGCTGTTATTTGTGGCAGA+AGG | - | chr1.4:16665085-16665104 | None:intergenic | 45.0% |
| ! | CCTGTGGGCATACTTTGAAA+CGG | - | chr1.4:16661379-16661398 | None:intergenic | 45.0% |
| ! | CTCTAAACGTGTGCTGTTGT+AGG | + | chr1.4:16662877-16662896 | MS.gene98953:intron | 45.0% |
| ! | GGAGGGACTTTTACACATCA+AGG | + | chr1.4:16661727-16661746 | MS.gene98953:CDS | 45.0% |
| ! | TAGGCTGCTTTGAGCAATAC+CGG | + | chr1.4:16666316-16666335 | MS.gene98953:intron | 45.0% |
| ! | TCTCTATTTGCTAGGTTGGG+AGG | + | chr1.4:16666523-16666542 | MS.gene98953:intron | 45.0% |
| ! | TGATGACTTGGCACTTGCAA+GGG | + | chr1.4:16663036-16663055 | MS.gene98953:intron | 45.0% |
| ! | TGTGCTGTTGTAGGAATGGT+GGG | + | chr1.4:16662886-16662905 | MS.gene98953:intron | 45.0% |
| ! | TGTTTCTGCTCAACAGAGGA+AGG | + | chr1.4:16661349-16661368 | MS.gene98953:CDS | 45.0% |
| ! | TTATCAGTCAGTGGTGCCAA+TGG | + | chr1.4:16662221-16662240 | MS.gene98953:intron | 45.0% |
| ! | TTGATGACTTGGCACTTGCA+AGG | + | chr1.4:16663035-16663054 | MS.gene98953:intron | 45.0% |
| ! | TTGTCAGGTTGCATTGAGCT+TGG | - | chr1.4:16663355-16663374 | None:intergenic | 45.0% |
| !! | AAAGGGCATTTGGACTTACG+AGG | + | chr1.4:16662067-16662086 | MS.gene98953:CDS | 45.0% |
| !! | AGCTGGAATGAAAGGGCATT+TGG | + | chr1.4:16662057-16662076 | MS.gene98953:CDS | 45.0% |
| !! | ATTCGGGAGCTGTTTTACAG+TGG | + | chr1.4:16660930-16660949 | MS.gene98953:CDS | 45.0% |
| !! | GCTATAGCATTTTTGGGGGT+CGG | + | chr1.4:16664978-16664997 | MS.gene98953:intron | 45.0% |
| !! | GGAATGGTGGGTTTATCTCT+AGG | + | chr1.4:16662898-16662917 | MS.gene98953:intron | 45.0% |
| !! | GGACTTGTTGTCAGTTCAGA+TGG | + | chr1.4:16665479-16665498 | MS.gene98953:CDS | 45.0% |
| !! | GGTGTGGTGCCATATTTGAA+AGG | - | chr1.4:16664048-16664067 | None:intergenic | 45.0% |
| !! | TCCCGCTATAGCATTTTTGG+GGG | + | chr1.4:16664974-16664993 | MS.gene98953:intron | 45.0% |
| AAAACACTGGGCCACTCATC+TGG | + | chr1.4:16661824-16661843 | MS.gene98953:CDS | 50.0% | |
| AAAATGGAAGGCGGTGGAGA+GGG | - | chr1.4:16663939-16663958 | None:intergenic | 50.0% | |
| AAGCAGTTGGATCGAGCACT+TGG | + | chr1.4:16662010-16662029 | MS.gene98953:CDS | 50.0% | |
| ACACAAGTGCAGGCTGAACT+TGG | + | chr1.4:16663325-16663344 | MS.gene98953:intron | 50.0% | |
| ACCGGAAAGGCCCTAACATA+TGG | + | chr1.4:16666278-16666297 | MS.gene98953:intron | 50.0% | |
| ACGGAGACCCGATAAACACT+CGG | - | chr1.4:16661193-16661212 | None:intergenic | 50.0% | |
| AGAGGTCATTGCCAGTGTGA+AGG | + | chr1.4:16663172-16663191 | MS.gene98953:CDS | 50.0% | |
| AGCACCTGGCAGGGAAAAAA+GGG | - | chr1.4:16665396-16665415 | None:intergenic | 50.0% | |
| AGCAGTTGGATCGAGCACTT+GGG | + | chr1.4:16662011-16662030 | MS.gene98953:CDS | 50.0% | |
| ATCAATTCCAGCACCTGGCA+GGG | - | chr1.4:16665405-16665424 | None:intergenic | 50.0% | |
| CATTCAAGGTGGCATTGCTC+AGG | + | chr1.4:16662933-16662952 | MS.gene98953:CDS | 50.0% | |
| CCGTTTCAAAGTATGCCCAC+AGG | + | chr1.4:16661376-16661395 | MS.gene98953:CDS | 50.0% | |
| CGCCATGGCTTATTGCATAG+CGG | - | chr1.4:16664181-16664200 | None:intergenic | 50.0% | |
| CTGCTCCAACACACCACAAA+TGG | - | chr1.4:16662093-16662112 | None:intergenic | 50.0% | |
| GAAATAGCGGTCATAGCGCT+AGG | + | chr1.4:16664946-16664965 | MS.gene98953:intron | 50.0% | |
| GACCGCTATGCAATAAGCCA+TGG | + | chr1.4:16664176-16664195 | MS.gene98953:intron | 50.0% | |
| GCAATGCTATCACTGGTCAC+AGG | - | chr1.4:16662168-16662187 | None:intergenic | 50.0% | |
| GCACCATAGCATGTATAGGG+TGG | - | chr1.4:16663731-16663750 | None:intergenic | 50.0% | |
| GCATTTGTGCAAGTGCTAGG+GGG | + | chr1.4:16666035-16666054 | MS.gene98953:intron | 50.0% | |
| GGCGTAGCGTTATGAGATAG+CGG | + | chr1.4:16664197-16664216 | MS.gene98953:intron | 50.0% | |
| GGCTAAGGTTGAGGTCATGA+AGG | + | chr1.4:16661706-16661725 | MS.gene98953:CDS | 50.0% | |
| GGTGTGTTGGAGCAGACAAT+AGG | + | chr1.4:16662098-16662117 | MS.gene98953:CDS | 50.0% | |
| GTGTGATCAATTCCAGCACC+TGG | - | chr1.4:16665410-16665429 | None:intergenic | 50.0% | |
| TAAAATGGAAGGCGGTGGAG+AGG | - | chr1.4:16663940-16663959 | None:intergenic | 50.0% | |
| TACGGTCTATGGCAGATGGA+TGG | - | chr1.4:16664093-16664112 | None:intergenic | 50.0% | |
| TATCGGGTCTCCGTTTGTTC+AGG | + | chr1.4:16661199-16661218 | MS.gene98953:CDS | 50.0% | |
| TGAGTCGGCGTCAGAAAAAC+TGG | - | chr1.4:16661555-16661574 | None:intergenic | 50.0% | |
| TGCCATAAAATGGAAGGCGG+TGG | - | chr1.4:16663945-16663964 | None:intergenic | 50.0% | |
| TGGACTTACGAGGCCATTTG+TGG | + | chr1.4:16662077-16662096 | MS.gene98953:CDS | 50.0% | |
| TGGCCATGCTAGTGCAATGA+TGG | + | chr1.4:16663683-16663702 | MS.gene98953:intron | 50.0% | |
| TGTTAGGGCCTTTCCGGTTA+AGG | - | chr1.4:16666276-16666295 | None:intergenic | 50.0% | |
| TTCTGCTCAACAGAGGAAGG+TGG | + | chr1.4:16661352-16661371 | MS.gene98953:CDS | 50.0% | |
| TTGGGTGCTAAAAGTGGAGC+AGG | + | chr1.4:16665273-16665292 | MS.gene98953:CDS | 50.0% | |
| TTGTGATTCCTCTTCAGGCG+TGG | - | chr1.4:16666565-16666584 | None:intergenic | 50.0% | |
| TTGTGGCAGAAGGCTGTTCA+TGG | - | chr1.4:16665075-16665094 | None:intergenic | 50.0% | |
| ! | AACAGGAAAGGGCACATCTG+TGG | + | chr1.4:16666612-16666631 | MS.gene98953:CDS | 50.0% |
| ! | AAGCTTGACTCGAGTTCGAC+AGG | + | chr1.4:16663591-16663610 | MS.gene98953:intron | 50.0% |
| ! | AGCTTGACTCGAGTTCGACA+GGG | + | chr1.4:16663592-16663611 | MS.gene98953:intron | 50.0% |
| ! | ATAACCAAACGAGGAGGTGC+AGG | + | chr1.4:16666636-16666655 | MS.gene98953:CDS | 50.0% |
| ! | ATGAGATAGCGGCGCAATAG+CGG | + | chr1.4:16664208-16664227 | MS.gene98953:intron | 50.0% |
| ! | CTCCACCGCCTTCCATTTTA+TGG | + | chr1.4:16663940-16663959 | MS.gene98953:intron | 50.0% |
| ! | GCTTCTTCGTGTTGCTACCA+GGG | + | chr1.4:16662700-16662719 | MS.gene98953:intron | 50.0% |
| ! | GTGTGCTGTTGTAGGAATGG+TGG | + | chr1.4:16662885-16662904 | MS.gene98953:intron | 50.0% |
| ! | TAACCAAACGAGGAGGTGCA+GGG | + | chr1.4:16666637-16666656 | MS.gene98953:CDS | 50.0% |
| ! | TGCTTCTTCGTGTTGCTACC+AGG | + | chr1.4:16662699-16662718 | MS.gene98953:intron | 50.0% |
| !! | GAATCGAAGGCTGTTTTCGC+TGG | - | chr1.4:16663787-16663806 | None:intergenic | 50.0% |
| !! | GGTTGGGAGGCACTATATTG+TGG | + | chr1.4:16666536-16666555 | MS.gene98953:intron | 50.0% |
| ACTGGAAGGATCCCAGCTTC+TGG | + | chr1.4:16664673-16664692 | MS.gene98953:intron | 55.0% | |
| CAGCACCTGGCAGGGAAAAA+AGG | - | chr1.4:16665397-16665416 | None:intergenic | 55.0% | |
| CATGCTATGGTGCAGTGCAG+TGG | + | chr1.4:16663738-16663757 | MS.gene98953:intron | 55.0% | |
| CGAGGCCATTTGTGGTGTGT+TGG | + | chr1.4:16662085-16662104 | MS.gene98953:CDS | 55.0% | |
| CTGGCAGGGAAAAAAGGGCA+TGG | - | chr1.4:16665391-16665410 | None:intergenic | 55.0% | |
| GAGTCGGGCTGAGTCAAACT+TGG | + | chr1.4:16663534-16663553 | MS.gene98953:intron | 55.0% | |
| GATCAATTCCAGCACCTGGC+AGG | - | chr1.4:16665406-16665425 | None:intergenic | 55.0% | |
| GCTCAGGATCTTCGCTGTGA+TGG | + | chr1.4:16662949-16662968 | MS.gene98953:CDS | 55.0% | |
| GCTTCTCAGGGCTCAAACGA+AGG | + | chr1.4:16661473-16661492 | MS.gene98953:CDS | 55.0% | |
| GGACTGACAGGTGACACCTA+TGG | + | chr1.4:16662721-16662740 | MS.gene98953:CDS | 55.0% | |
| GGCTTATTGCATAGCGGTCC+TGG | - | chr1.4:16664175-16664194 | None:intergenic | 55.0% | |
| GTCGCATGTGGCTAAGGTTG+AGG | + | chr1.4:16661697-16661716 | MS.gene98953:CDS | 55.0% | |
| TGTTGCTACCAGGGACTGAC+AGG | + | chr1.4:16662709-16662728 | MS.gene98953:intron | 55.0% | |
| ! | CGCTCTAGGTGCTGTCATCA+AGG | + | chr1.4:16665514-16665533 | MS.gene98953:CDS | 55.0% |
| !! | CGCTGGTGGTGTCATGAGAA+TGG | - | chr1.4:16663770-16663789 | None:intergenic | 55.0% |
| !! | CTGACGCCGACTCAACATCA+TGG | + | chr1.4:16661561-16661580 | MS.gene98953:CDS | 55.0% |
| !! | GACTGCAGAGCCTGCTTTTG+AGG | + | chr1.4:16663408-16663427 | MS.gene98953:CDS | 55.0% |
| !! | TCGAAGGCTGTTTTCGCTGG+TGG | - | chr1.4:16663784-16663803 | None:intergenic | 55.0% |
| !!! | CATGCCCTTTTTTCCCTGCC+AGG | + | chr1.4:16665389-16665408 | MS.gene98953:intron | 55.0% |
| !!! | CTTTTTTCCCTGCCAGGTGC+TGG | + | chr1.4:16665395-16665414 | MS.gene98953:intron | 55.0% |
| AGTGAGAGGATGGTTGGGCG+TGG | + | chr1.4:16661983-16662002 | MS.gene98953:CDS | 60.0% | |
| CAACCCTGCACCTCCTCGTT+TGG | - | chr1.4:16666643-16666662 | None:intergenic | 60.0% | |
| GCTATGGTGCAGTGCAGTGG+TGG | + | chr1.4:16663741-16663760 | MS.gene98953:intron | 60.0% | |
| GGCGCTATAGCGGCCAATAG+CGG | + | chr1.4:16664130-16664149 | MS.gene98953:intron | 60.0% | |
| GTCATGGCAGCTTCCGCTTC+TGG | + | chr1.4:16664561-16664580 | MS.gene98953:intron | 60.0% | |
| TGGGCGTGGTGTGAAGCAGT+TGG | + | chr1.4:16661997-16662016 | MS.gene98953:CDS | 60.0% | |
| TGTGGATGCCACGCCTGAAG+AGG | + | chr1.4:16666554-16666573 | MS.gene98953:CDS | 60.0% | |
| ! | AGGTGTCACCTGTCAGTCCC+TGG | - | chr1.4:16662720-16662739 | None:intergenic | 60.0% |
| ! | CAAACGAGGAGGTGCAGGGT+TGG | + | chr1.4:16666641-16666660 | MS.gene98953:CDS | 60.0% |
| AAGGCGGTGGAGAGGGTCAC+TGG | - | chr1.4:16663932-16663951 | None:intergenic | 65.0% | |
| GCGGCCGCAACACTGCATAG+CGG | + | chr1.4:16664227-16664246 | MS.gene98953:intron | 65.0% | |
| ! | TAGCGGATAGCGGCGCGTAG+CGG | - | chr1.4:16665004-16665023 | None:intergenic | 65.0% |
| AGCGGCCAATAGCGGCCGCG+CGG | + | chr1.4:16664138-16664157 | MS.gene98953:intron | 75.0% | |
| CCAATAGCGGCCGCGCGGTG+CGG | + | chr1.4:16664143-16664162 | MS.gene98953:intron | 75.0% | |
| CTGGAACGCACCGCACCGCG+CGG | - | chr1.4:16664156-16664175 | None:intergenic | 75.0% | |
| ! | CCGCACCGCGCGGCCGCTAT+TGG | - | chr1.4:16664146-16664165 | None:intergenic | 80.0% |
| ! | CGCGCGGTGCGGTGCGTTCC+AGG | + | chr1.4:16664154-16664173 | MS.gene98953:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 16660918 | 16666773 | 16660918 | ID=MS.gene98953 |
| chr1.4 | mRNA | 16660918 | 16666773 | 16660918 | ID=MS.gene98953.t1;Parent=MS.gene98953 |
| chr1.4 | exon | 16660918 | 16662159 | 16660918 | ID=MS.gene98953.t1.exon1;Parent=MS.gene98953.t1 |
| chr1.4 | CDS | 16660918 | 16662159 | 16660918 | ID=cds.MS.gene98953.t1;Parent=MS.gene98953.t1 |
| chr1.4 | exon | 16662721 | 16662757 | 16662721 | ID=MS.gene98953.t1.exon2;Parent=MS.gene98953.t1 |
| chr1.4 | CDS | 16662721 | 16662757 | 16662721 | ID=cds.MS.gene98953.t1;Parent=MS.gene98953.t1 |
| chr1.4 | exon | 16662899 | 16663026 | 16662899 | ID=MS.gene98953.t1.exon3;Parent=MS.gene98953.t1 |
| chr1.4 | CDS | 16662899 | 16663026 | 16662899 | ID=cds.MS.gene98953.t1;Parent=MS.gene98953.t1 |
| chr1.4 | exon | 16663137 | 16663193 | 16663137 | ID=MS.gene98953.t1.exon4;Parent=MS.gene98953.t1 |
| chr1.4 | CDS | 16663137 | 16663193 | 16663137 | ID=cds.MS.gene98953.t1;Parent=MS.gene98953.t1 |
| chr1.4 | exon | 16663337 | 16663429 | 16663337 | ID=MS.gene98953.t1.exon5;Parent=MS.gene98953.t1 |
| chr1.4 | CDS | 16663337 | 16663429 | 16663337 | ID=cds.MS.gene98953.t1;Parent=MS.gene98953.t1 |
| chr1.4 | exon | 16665216 | 16665294 | 16665216 | ID=MS.gene98953.t1.exon6;Parent=MS.gene98953.t1 |
| chr1.4 | CDS | 16665216 | 16665294 | 16665216 | ID=cds.MS.gene98953.t1;Parent=MS.gene98953.t1 |
| chr1.4 | exon | 16665411 | 16665535 | 16665411 | ID=MS.gene98953.t1.exon7;Parent=MS.gene98953.t1 |
| chr1.4 | CDS | 16665411 | 16665535 | 16665411 | ID=cds.MS.gene98953.t1;Parent=MS.gene98953.t1 |
| chr1.4 | exon | 16666319 | 16666462 | 16666319 | ID=MS.gene98953.t1.exon8;Parent=MS.gene98953.t1 |
| chr1.4 | CDS | 16666319 | 16666462 | 16666319 | ID=cds.MS.gene98953.t1;Parent=MS.gene98953.t1 |
| chr1.4 | exon | 16666537 | 16666773 | 16666537 | ID=MS.gene98953.t1.exon9;Parent=MS.gene98953.t1 |
| chr1.4 | CDS | 16666537 | 16666773 | 16666537 | ID=cds.MS.gene98953.t1;Parent=MS.gene98953.t1 |
| Gene Sequence |
| Protein sequence |
