AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580028552.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028552.01.T01 MTR_5g074130 89.599 548 56 1 13 559 1 548 0.0 1008
MsG0580028552.01.T01 MTR_5g073920 54.891 552 227 6 15 559 2 538 0.0 579
MsG0580028552.01.T01 MTR_3g464010 50.267 561 243 9 17 559 4 546 1.78e-175 512
MsG0580028552.01.T01 MTR_5g073480 52.158 533 226 12 21 528 6 534 1.05e-171 500
MsG0580028552.01.T01 MTR_5g073460 49.736 569 255 11 15 558 2 564 6.94e-171 501
MsG0580028552.01.T01 MTR_5g073620 48.714 583 241 11 21 558 6 575 1.03e-165 499
MsG0580028552.01.T01 MTR_5g073620 28.302 212 125 6 354 559 753 943 2.43e-13 73.6
MsG0580028552.01.T01 MTR_5g093530 87.109 256 32 1 13 267 1 256 1.80e-151 447
MsG0580028552.01.T01 MTR_5g093530 87.556 225 28 0 335 559 244 468 1.03e-138 414
MsG0580028552.01.T01 MTR_5g073960 52.693 427 185 6 15 436 2 416 3.54e-137 405
MsG0580028552.01.T01 MTR_5g073810 43.791 459 187 9 17 446 4 420 7.26e-107 327
MsG0580028552.01.T01 MTR_5g073770 42.263 433 174 12 21 436 6 379 6.85e-87 274
MsG0580028552.01.T01 MTR_5g073610 48.012 327 143 8 22 338 7 316 2.36e-86 271
MsG0580028552.01.T01 MTR_5g073880 55.311 273 95 6 13 280 1 251 8.25e-85 265
MsG0580028552.01.T01 MTR_5g074450 57.752 258 85 6 19 252 6 263 9.57e-84 271
MsG0580028552.01.T01 MTR_5g073750 50.725 276 129 4 22 290 7 282 6.85e-83 260
MsG0580028552.01.T01 MTR_5g073470 43.925 321 120 6 17 332 4 269 2.53e-74 238
MsG0580028552.01.T01 MTR_5g073450 48.243 313 144 7 260 559 199 506 6.50e-73 245
MsG0580028552.01.T01 MTR_5g074190 70.520 173 47 2 17 188 1 170 7.99e-72 238
MsG0580028552.01.T01 MTR_5g074190 32.432 148 95 2 398 544 184 327 3.33e-15 79.0
MsG0580028552.01.T01 MTR_5g073840 55.288 208 87 3 16 217 3 210 6.34e-69 223
MsG0580028552.01.T01 MTR_3g031130 46.057 317 150 9 259 559 188 499 1.57e-63 219
MsG0580028552.01.T01 MTR_5g073820 33.026 542 187 16 24 531 30 429 3.24e-63 215
MsG0580028552.01.T01 MTR_5g074150 64.968 157 54 1 26 181 24 180 3.52e-60 200
MsG0580028552.01.T01 MTR_5g073650 38.483 356 150 7 118 446 5 318 1.37e-59 201
MsG0580028552.01.T01 MTR_5g074090 60.759 158 60 1 26 181 13 170 1.07e-58 196
MsG0580028552.01.T01 MTR_5g073900 42.969 256 133 5 280 533 1 245 1.32e-51 180
MsG0580028552.01.T01 MTR_5g073860 48.205 195 92 2 16 204 17 208 8.89e-51 179
MsG0580028552.01.T01 MTR_5g074200 50.526 190 93 1 17 205 1 190 3.78e-50 176
MsG0580028552.01.T01 MTR_5g073660 41.111 270 89 6 24 263 30 259 4.61e-48 169
MsG0580028552.01.T01 MTR_5g074070 40.541 259 107 7 17 248 4 242 5.09e-42 151
MsG0580028552.01.T01 MTR_1g090620 30.745 322 205 7 244 559 190 499 8.80e-39 151
MsG0580028552.01.T01 MTR_6g078770 40.816 196 113 3 31 223 109 304 8.49e-35 135
MsG0580028552.01.T01 MTR_5g073500 48.366 153 49 2 26 178 1 123 1.01e-34 127
MsG0580028552.01.T01 MTR_1g057560 31.000 300 194 5 265 559 202 493 3.27e-34 137
MsG0580028552.01.T01 MTR_7g026630 31.692 325 191 8 244 548 199 512 1.04e-32 133
MsG0580028552.01.T01 MTR_6g078610 43.678 174 96 2 30 201 593 766 2.07e-32 133
MsG0580028552.01.T01 MTR_5g093540 44.156 154 61 2 17 170 1 129 1.76e-28 114
MsG0580028552.01.T01 MTR_8g021330 27.187 320 206 8 262 559 161 475 7.65e-28 118
MsG0580028552.01.T01 MTR_6g075870 39.326 178 104 4 10 184 593 769 1.38e-27 118
MsG0580028552.01.T01 MTR_4g103540 28.076 317 209 7 257 559 243 554 6.95e-26 112
MsG0580028552.01.T01 MTR_6g033310 30.263 304 184 6 268 548 288 586 9.21e-26 112
MsG0580028552.01.T01 MTR_1g067480 23.385 325 212 7 262 559 166 480 1.43e-21 99.0
MsG0580028552.01.T01 MTR_4g019260 68.333 60 19 0 343 402 10 69 3.14e-21 87.8
MsG0580028552.01.T01 MTR_4g023690 56.250 80 33 2 75 153 8 86 8.25e-21 87.4
MsG0580028552.01.T01 MTR_7g013770 25.617 324 211 8 261 559 225 543 2.32e-20 95.5
MsG0580028552.01.T01 MTR_1g067460 23.780 328 207 10 262 559 164 478 2.38e-20 95.1
MsG0580028552.01.T01 MTR_2g096230 21.184 321 231 6 257 559 152 468 2.33e-19 92.0
MsG0580028552.01.T01 MTR_3g025900 25.249 301 207 6 262 548 181 477 5.28e-19 91.3
MsG0580028552.01.T01 MTR_6g078770 31.633 196 100 4 31 223 109 273 1.82e-18 87.0
MsG0580028552.01.T01 MTR_4g062330 23.492 315 205 8 273 559 181 487 1.92e-18 89.4
MsG0580028552.01.T01 MTR_6g078620 32.955 176 88 3 18 192 79 225 1.57e-17 82.4
MsG0580028552.01.T01 MTR_5g073830 52.500 80 37 1 20 98 7 86 1.13e-16 79.7
MsG0580028552.01.T01 MTR_5g073850 38.298 141 72 2 97 237 14 139 1.46e-14 72.0
MsG0580028552.01.T01 MTR_5g073780 36.364 110 58 2 450 559 1 98 7.81e-14 71.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580028552.01.T01 AT5G58430 46.497 314 149 9 246 548 176 481 1.17e-68 233
MsG0580028552.01.T01 AT1G07000 38.312 308 175 9 260 559 176 476 1.21e-45 170
MsG0580028552.01.T01 AT5G50380 30.645 310 203 8 257 559 230 534 4.50e-32 131
MsG0580028552.01.T01 AT5G03540 30.233 301 196 6 265 559 87 379 1.70e-31 128
MsG0580028552.01.T01 AT5G03540 30.233 301 196 6 265 559 202 494 3.37e-31 128
MsG0580028552.01.T01 AT5G03540 30.233 301 196 6 265 559 228 520 3.49e-31 129
MsG0580028552.01.T01 AT5G52340 29.508 305 192 8 265 559 202 493 2.66e-30 125
MsG0580028552.01.T01 AT1G54090 28.990 307 191 8 262 548 170 469 2.37e-29 123
MsG0580028552.01.T01 AT1G72470 30.619 307 188 8 262 548 178 479 8.70e-28 118
MsG0580028552.01.T01 AT3G14090 27.541 305 199 8 262 549 173 472 1.12e-27 118
MsG0580028552.01.T01 AT5G13150 31.190 311 172 9 267 548 209 506 7.62e-26 112
MsG0580028552.01.T01 AT2G39380 24.189 339 233 7 241 559 153 487 6.19e-23 103
MsG0580028552.01.T01 AT5G13990 27.577 359 226 12 201 548 208 543 1.46e-21 99.4
MsG0580028552.01.T01 AT3G55150 25.321 312 206 7 269 559 183 488 4.03e-21 97.8
MsG0580028552.01.T01 AT3G29400 24.478 335 209 8 259 558 194 519 5.54e-20 94.4
MsG0580028552.01.T01 AT5G52350 26.821 302 204 8 265 559 156 447 3.12e-19 91.7
MsG0580028552.01.T01 AT2G28640 24.204 314 209 8 268 559 155 461 4.97e-17 85.1
MsG0580028552.01.T01 AT3G09520 22.291 323 223 8 260 559 162 479 1.99e-16 83.2
MsG0580028552.01.T01 AT5G61010 24.062 320 207 8 263 559 205 511 1.25e-15 80.5
MsG0580028552.01.T01 AT5G61010 24.062 320 207 8 263 559 205 511 1.25e-15 80.5
MsG0580028552.01.T01 AT1G07725 23.226 310 213 7 268 559 175 477 1.88e-15 80.1
MsG0580028552.01.T01 AT3G09530 21.672 323 226 9 260 559 157 475 2.86e-14 76.3
MsG0580028552.01.T01 AT5G59730 22.981 322 207 11 268 559 165 475 1.30e-13 74.3
MsG0580028552.01.T01 AT5G59730 22.981 322 207 11 268 559 165 475 1.94e-13 73.6

Find 88 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAATCAATCGTTACCAAATA+TGG 0.228759 5:+82185892 None:intergenic
TTGCTTCTCCTAATCTGTTT+TGG 0.232404 5:+82186269 None:intergenic
TTTAATTAAAAGGTGGGATT+TGG 0.239403 5:-82185918 MsG0580028552.01.T01:CDS
TGGGATTTGGAAACCATATT+TGG 0.243486 5:-82185905 MsG0580028552.01.T01:CDS
AAGTTGCAGTTATTTATTAT+TGG 0.254047 5:-82187063 MsG0580028552.01.T01:CDS
CTGATGGAAGCCCTTCCTTT+TGG 0.280534 5:-82186393 MsG0580028552.01.T01:CDS
ACTCATTAACACACTGTATA+AGG 0.294160 5:-82187545 MsG0580028552.01.T01:CDS
AGCAAGGTCTCTGTACTCTT+TGG 0.301069 5:+82185985 None:intergenic
TGTCTAATCAATAGATTATT+CGG 0.316039 5:-82186643 MsG0580028552.01.T01:CDS
ACATAGAAGATTTAATTAAA+AGG 0.323041 5:-82185928 MsG0580028552.01.T01:CDS
CCACTTGGGTGCTGATTCTT+CGG 0.339621 5:-82186314 MsG0580028552.01.T01:CDS
ACAACAGATGAAATGGATAA+TGG 0.343765 5:-82186038 MsG0580028552.01.T01:CDS
TGCTTCAGCTGCTGTTGGAC+TGG 0.347370 5:-82187445 MsG0580028552.01.T01:CDS
GACTCTGATTTGATGTTGCC+TGG 0.369550 5:-82186805 MsG0580028552.01.T01:CDS
TGAATTCCAAGATGAAAATT+CGG 0.373996 5:-82186971 MsG0580028552.01.T01:CDS
CGAGCAACTTTCTTTGCTGC+TGG 0.378507 5:+82186202 None:intergenic
TGAAGGGAGTTGATCAAATC+TGG 0.381983 5:+82186754 None:intergenic
GAATATCCCAAGGTGAATAA+TGG 0.388220 5:-82186085 MsG0580028552.01.T01:CDS
GATAATTTAGTTTCAAGAAA+AGG 0.391899 5:+82186239 None:intergenic
GAGTTTGTCGCGGAAATCTC+AGG 0.392478 5:-82187151 MsG0580028552.01.T01:CDS
TCATGAAACCGCGAAGTTCA+TGG 0.399822 5:-82186734 MsG0580028552.01.T01:CDS
ACAGATTAGGAGAAGCAATC+AGG 0.400494 5:-82186264 MsG0580028552.01.T01:CDS
AACTCATCGATCATGATGTT+AGG 0.400629 5:+82186781 None:intergenic
CTTTCTTTGCTGCTGGGACT+CGG 0.433860 5:+82186209 None:intergenic
GGATTTGCTTCAGCTGCTGT+TGG 0.441246 5:-82187450 MsG0580028552.01.T01:CDS
TCACAGAGTCGTCGCTCAAA+TGG 0.441429 5:+82186514 None:intergenic
CATGGTAAGTGCTGGGTTTG+AGG 0.442877 5:-82186716 MsG0580028552.01.T01:CDS
CAGTTATTTATTATTGGAGC+AGG 0.449950 5:-82187057 MsG0580028552.01.T01:CDS
AGAAGATTTAATTAAAAGGT+GGG 0.450847 5:-82185924 MsG0580028552.01.T01:CDS
ACTACTCCATTATTCACCTT+GGG 0.459128 5:+82186079 None:intergenic
GTTACAGTCCAAAACAGATT+AGG 0.467068 5:-82186277 MsG0580028552.01.T01:CDS
AATTTCTTCTACAGAAGAAA+AGG 0.469100 5:+82187002 None:intergenic
CCATTGCAGAAGGAAATGTT+TGG 0.471945 5:-82186671 MsG0580028552.01.T01:CDS
GCGAAGTTCATGGTAAGTGC+TGG 0.476769 5:-82186724 MsG0580028552.01.T01:CDS
GAGCAACTTTCTTTGCTGCT+GGG 0.482217 5:+82186203 None:intergenic
AAGCGACGTAGCTAATGATC+TGG 0.484649 5:+82186149 None:intergenic
TTGAATAAACACCAAAAGGA+AGG 0.485990 5:+82186382 None:intergenic
CCAAACATTTCCTTCTGCAA+TGG 0.491403 5:+82186671 None:intergenic
GAAATGAGGCTATATGCATC+TGG 0.496530 5:+82187201 None:intergenic
CTAATGATCTGGACCACCAT+TGG 0.498577 5:+82186160 None:intergenic
ACGAAGGTATGGAGATTTGT+CGG 0.506373 5:-82187471 MsG0580028552.01.T01:CDS
TTCGCTGATGCAGTTGCTGA+TGG 0.507020 5:-82186409 MsG0580028552.01.T01:CDS
TACTACTCCATTATTCACCT+TGG 0.508435 5:+82186078 None:intergenic
GGCTGATGCAGACGAAGGTA+TGG 0.509287 5:-82187482 MsG0580028552.01.T01:CDS
AAGAAAGTTGCTCGGTCTGA+TGG 0.517438 5:-82186193 MsG0580028552.01.T01:CDS
ACTCATCGATCATGATGTTA+GGG 0.526299 5:+82186782 None:intergenic
CGAAGTTCATGGTAAGTGCT+GGG 0.535756 5:-82186723 MsG0580028552.01.T01:CDS
GGAAACAGTCTAGAAGTCTT+CGG 0.536286 5:-82187302 MsG0580028552.01.T01:CDS
CAGATTAGGAGAAGCAATCA+GGG 0.537526 5:-82186263 MsG0580028552.01.T01:CDS
GGGTGCTGATTCTTCGGTGA+AGG 0.537582 5:-82186308 MsG0580028552.01.T01:CDS
GAACTTCGCGGTTTCATGAA+GGG 0.539523 5:+82186738 None:intergenic
TGAACTTCGCGGTTTCATGA+AGG 0.542330 5:+82186737 None:intergenic
ACATCGGGAATGAAAATCAA+AGG 0.543866 5:-82186606 MsG0580028552.01.T01:CDS
TAGAAGATTTAATTAAAAGG+TGG 0.546097 5:-82185925 MsG0580028552.01.T01:CDS
TGAATAAACACCAAAAGGAA+GGG 0.548745 5:+82186383 None:intergenic
TCGATCATGATGTTAGGGCC+AGG 0.553016 5:+82186787 None:intergenic
TTGCAGAAGGAAATGTTTGG+AGG 0.555339 5:-82186668 MsG0580028552.01.T01:CDS
CAAAGGCAGCACAAGAAATG+AGG 0.556020 5:+82187187 None:intergenic
GATTGCAGAAGATTAACATC+GGG 0.561302 5:-82186621 MsG0580028552.01.T01:CDS
GCTACGTCGCTTCTGCATGT+AGG 0.571994 5:-82186138 MsG0580028552.01.T01:CDS
TGAAAAGATTGCGCAAAGCA+AGG 0.573006 5:+82185969 None:intergenic
CATCGGGAATGAAAATCAAA+GGG 0.583551 5:-82186605 MsG0580028552.01.T01:CDS
AGCACTTACCATGAACTTCG+CGG 0.585018 5:+82186726 None:intergenic
ATGTATACATCCATTGCAGA+AGG 0.591121 5:-82186681 MsG0580028552.01.T01:CDS
TTGATATCGAAATTCCACTT+GGG 0.612668 5:-82186328 MsG0580028552.01.T01:CDS
TTTGATATCGAAATTCCACT+TGG 0.613822 5:-82186329 MsG0580028552.01.T01:CDS
AAACAACGAGTAGCAGAGGA+GGG 0.616280 5:+82186472 None:intergenic
ATCTCAGGGTGGATTCGAAG+TGG 0.619524 5:-82187136 MsG0580028552.01.T01:CDS
CAGCAGCAAAGAAAGTTGCT+CGG 0.622781 5:-82186201 MsG0580028552.01.T01:CDS
AGTTTGTCGCGGAAATCTCA+GGG 0.626165 5:-82187150 MsG0580028552.01.T01:CDS
TGATGGTCGACATCATCCAA+TGG 0.628831 5:-82186176 MsG0580028552.01.T01:CDS
CCGAAGAATCAGCACCCAAG+TGG 0.635114 5:+82186314 None:intergenic
TCAGCCATGTCTGAATTCTG+AGG 0.645050 5:+82187499 None:intergenic
GAAACAACGAGTAGCAGAGG+AGG 0.648023 5:+82186471 None:intergenic
GGATTGCAGAAGATTAACAT+CGG 0.649736 5:-82186622 MsG0580028552.01.T01:CDS
TGTGAAACAACGAGTAGCAG+AGG 0.656858 5:+82186468 None:intergenic
TGCTACTCGTTGTTTCACAG+AGG 0.669048 5:-82186464 MsG0580028552.01.T01:CDS
GACATGGCTGATGCAGACGA+AGG 0.670723 5:-82187487 MsG0580028552.01.T01:CDS
GCAAAACTTGTTCTAGCGTG+CGG 0.672133 5:+82186110 None:intergenic
ACTCAGTGACATGATAGCAA+AGG 0.674248 5:+82187170 None:intergenic
TCATGTCACTGAGTTTGTCG+CGG 0.675556 5:-82187161 MsG0580028552.01.T01:CDS
AACAACGAGTAGCAGAGGAG+GGG 0.675729 5:+82186473 None:intergenic
TGGTCGACATCATCCAATGG+TGG 0.692831 5:-82186173 MsG0580028552.01.T01:CDS
AGGGAGTTGATCAAATCTGG+AGG 0.695828 5:+82186757 None:intergenic
GAAGTAAAACGAATAGACAG+AGG 0.696789 5:+82187242 None:intergenic
TATAAGGAAGAACATGACAG+TGG 0.703912 5:-82187529 MsG0580028552.01.T01:CDS
TGTTCCTCAGAATTCAGACA+TGG 0.707083 5:-82187503 MsG0580028552.01.T01:CDS
TTGTCGCGGAAATCTCAGGG+TGG 0.756035 5:-82187147 MsG0580028552.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAGAAGATTTAATTAAA+AGG - Chr5:82187519-82187538 MsG0580028552.01.T01:CDS 15.0%
!! TAGATATTGTGATTAAAAAA+TGG - Chr5:82186874-82186893 MsG0580028552.01.T01:CDS 15.0%
!!! TGATTTTGTATGAAAATATA+TGG - Chr5:82186124-82186143 MsG0580028552.01.T01:CDS 15.0%
!! AAGTTGCAGTTATTTATTAT+TGG - Chr5:82186384-82186403 MsG0580028552.01.T01:CDS 20.0%
!! AGAAGATTTAATTAAAAGGT+GGG - Chr5:82187523-82187542 MsG0580028552.01.T01:CDS 20.0%
!! TAGAAGATTTAATTAAAAGG+TGG - Chr5:82187522-82187541 MsG0580028552.01.T01:CDS 20.0%
!! TGTCTAATCAATAGATTATT+CGG - Chr5:82186804-82186823 MsG0580028552.01.T01:CDS 20.0%
!!! GATAATTTAGTTTCAAGAAA+AGG + Chr5:82187211-82187230 None:intergenic 20.0%
! AATTTCTTCTACAGAAGAAA+AGG + Chr5:82186448-82186467 None:intergenic 25.0%
! GGAAGAATGAAAAATGATAA+CGG + Chr5:82186427-82186446 None:intergenic 25.0%
! TGAATTCCAAGATGAAAATT+CGG - Chr5:82186476-82186495 MsG0580028552.01.T01:CDS 25.0%
! TTTAATTAAAAGGTGGGATT+TGG - Chr5:82187529-82187548 MsG0580028552.01.T01:CDS 25.0%
!! ATCTTTTCATGATGAACAAT+AGG - Chr5:82187492-82187511 MsG0580028552.01.T01:CDS 25.0%
!! CATTTTGAATAAACACCAAA+AGG + Chr5:82187072-82187091 None:intergenic 25.0%
!! CTTTTATACAACAGATGAAA+TGG - Chr5:82187402-82187421 MsG0580028552.01.T01:CDS 25.0%
!! TAATTACCGAATTTTCATCT+TGG + Chr5:82186485-82186504 None:intergenic 25.0%
!! TTTTACTTCGATAAAGTGAA+CGG - Chr5:82186219-82186238 MsG0580028552.01.T01:CDS 25.0%
!! TTTTCTTCTGTAGAAGAAAT+TGG - Chr5:82186447-82186466 MsG0580028552.01.T01:CDS 25.0%
!!! GATCTTCTTTACTTTTTTCT+CGG - Chr5:82186333-82186352 MsG0580028552.01.T01:CDS 25.0%
ACAACAGATGAAATGGATAA+TGG - Chr5:82187409-82187428 MsG0580028552.01.T01:CDS 30.0%
ACTACCAAAAAGATAGTTGA+AGG + Chr5:82186049-82186068 None:intergenic 30.0%
ACTCATTAACACACTGTATA+AGG - Chr5:82185902-82185921 MsG0580028552.01.T01:CDS 30.0%
CAGTTATTTATTATTGGAGC+AGG - Chr5:82186390-82186409 MsG0580028552.01.T01:CDS 30.0%
TGAATAAACACCAAAAGGAA+GGG + Chr5:82187067-82187086 None:intergenic 30.0%
TTGAATAAACACCAAAAGGA+AGG + Chr5:82187068-82187087 None:intergenic 30.0%
TTGATATCGAAATTCCACTT+GGG - Chr5:82187119-82187138 MsG0580028552.01.T01:CDS 30.0%
TTTGATATCGAAATTCCACT+TGG - Chr5:82187118-82187137 MsG0580028552.01.T01:CDS 30.0%
! TCTTCCTTCAACTATCTTTT+TGG - Chr5:82186042-82186061 MsG0580028552.01.T01:CDS 30.0%
! TTTTCATGATGAACAATAGG+AGG - Chr5:82187495-82187514 MsG0580028552.01.T01:CDS 30.0%
!! TCAACTATCTTTTTGGTAGT+TGG - Chr5:82186049-82186068 MsG0580028552.01.T01:CDS 30.0%
AACTCATCGATCATGATGTT+AGG + Chr5:82186669-82186688 None:intergenic 35.0%
ACATCGGGAATGAAAATCAA+AGG - Chr5:82186841-82186860 MsG0580028552.01.T01:CDS 35.0%
ACTACTCCATTATTCACCTT+GGG + Chr5:82187371-82187390 None:intergenic 35.0%
ACTCATCGATCATGATGTTA+GGG + Chr5:82186668-82186687 None:intergenic 35.0%
ATGTATACATCCATTGCAGA+AGG - Chr5:82186766-82186785 MsG0580028552.01.T01:CDS 35.0%
CATCGGGAATGAAAATCAAA+GGG - Chr5:82186842-82186861 MsG0580028552.01.T01:CDS 35.0%
GAAGTAAAACGAATAGACAG+AGG + Chr5:82186208-82186227 None:intergenic 35.0%
GAATATCCCAAGGTGAATAA+TGG - Chr5:82187362-82187381 MsG0580028552.01.T01:CDS 35.0%
GATTGCAGAAGATTAACATC+GGG - Chr5:82186826-82186845 MsG0580028552.01.T01:CDS 35.0%
GGATTGCAGAAGATTAACAT+CGG - Chr5:82186825-82186844 MsG0580028552.01.T01:CDS 35.0%
GTTACAGTCCAAAACAGATT+AGG - Chr5:82187170-82187189 MsG0580028552.01.T01:CDS 35.0%
TACTACTCCATTATTCACCT+TGG + Chr5:82187372-82187391 None:intergenic 35.0%
TATAAGGAAGAACATGACAG+TGG - Chr5:82185918-82185937 MsG0580028552.01.T01:CDS 35.0%
TGGGATTTGGAAACCATATT+TGG - Chr5:82187542-82187561 MsG0580028552.01.T01:CDS 35.0%
! TTGCTTCTCCTAATCTGTTT+TGG + Chr5:82187181-82187200 None:intergenic 35.0%
ACAGATTAGGAGAAGCAATC+AGG - Chr5:82187183-82187202 MsG0580028552.01.T01:CDS 40.0%
ACTCAGTGACATGATAGCAA+AGG + Chr5:82186280-82186299 None:intergenic 40.0%
CAGATTAGGAGAAGCAATCA+GGG - Chr5:82187184-82187203 MsG0580028552.01.T01:CDS 40.0%
CCAAACATTTCCTTCTGCAA+TGG + Chr5:82186779-82186798 None:intergenic 40.0%
CCATTGCAGAAGGAAATGTT+TGG - Chr5:82186776-82186795 MsG0580028552.01.T01:CDS 40.0%
GAAATGAGGCTATATGCATC+TGG + Chr5:82186249-82186268 None:intergenic 40.0%
GGAAACAGTCTAGAAGTCTT+CGG - Chr5:82186145-82186164 MsG0580028552.01.T01:CDS 40.0%
TGAAAAGATTGCGCAAAGCA+AGG + Chr5:82187481-82187500 None:intergenic 40.0%
TGTTCCTCAGAATTCAGACA+TGG - Chr5:82185944-82185963 MsG0580028552.01.T01:CDS 40.0%
TTGCAGAAGGAAATGTTTGG+AGG - Chr5:82186779-82186798 MsG0580028552.01.T01:CDS 40.0%
! ACGAAGGTATGGAGATTTGT+CGG - Chr5:82185976-82185995 MsG0580028552.01.T01:CDS 40.0%
! AGTTTTGCAGGAATATCCCA+AGG - Chr5:82187352-82187371 MsG0580028552.01.T01:CDS 40.0%
! CTCTGTGATCATGTCTTTTC+AGG - Chr5:82186948-82186967 MsG0580028552.01.T01:CDS 40.0%
! TGAAGGGAGTTGATCAAATC+TGG + Chr5:82186696-82186715 None:intergenic 40.0%
!! CGTTGTTTCACAGAGGTTTT+CGG - Chr5:82186990-82187009 MsG0580028552.01.T01:CDS 40.0%
AAACAACGAGTAGCAGAGGA+GGG + Chr5:82186978-82186997 None:intergenic 45.0%
AAGAAAGTTGCTCGGTCTGA+TGG - Chr5:82187254-82187273 MsG0580028552.01.T01:CDS 45.0%
AAGCGACGTAGCTAATGATC+TGG + Chr5:82187301-82187320 None:intergenic 45.0%
AGCAAGGTCTCTGTACTCTT+TGG + Chr5:82187465-82187484 None:intergenic 45.0%
AGCACTTACCATGAACTTCG+CGG + Chr5:82186724-82186743 None:intergenic 45.0%
AGTTTGTCGCGGAAATCTCA+GGG - Chr5:82186297-82186316 MsG0580028552.01.T01:CDS 45.0%
CAAAGGCAGCACAAGAAATG+AGG + Chr5:82186263-82186282 None:intergenic 45.0%
CAGCAGCAAAGAAAGTTGCT+CGG - Chr5:82187246-82187265 MsG0580028552.01.T01:CDS 45.0%
CGAAGTTCATGGTAAGTGCT+GGG - Chr5:82186724-82186743 MsG0580028552.01.T01:CDS 45.0%
CTAATGATCTGGACCACCAT+TGG + Chr5:82187290-82187309 None:intergenic 45.0%
GAACTTCGCGGTTTCATGAA+GGG + Chr5:82186712-82186731 None:intergenic 45.0%
GAGCAACTTTCTTTGCTGCT+GGG + Chr5:82187247-82187266 None:intergenic 45.0%
TCAGCCATGTCTGAATTCTG+AGG + Chr5:82185951-82185970 None:intergenic 45.0%
TCATGAAACCGCGAAGTTCA+TGG - Chr5:82186713-82186732 MsG0580028552.01.T01:CDS 45.0%
TCATGTCACTGAGTTTGTCG+CGG - Chr5:82186286-82186305 MsG0580028552.01.T01:CDS 45.0%
TGAACTTCGCGGTTTCATGA+AGG + Chr5:82186713-82186732 None:intergenic 45.0%
TGATGGTCGACATCATCCAA+TGG - Chr5:82187271-82187290 MsG0580028552.01.T01:CDS 45.0%
TGTGAAACAACGAGTAGCAG+AGG + Chr5:82186982-82187001 None:intergenic 45.0%
! AGGGAGTTGATCAAATCTGG+AGG + Chr5:82186693-82186712 None:intergenic 45.0%
! CACGCTAGAACAAGTTTTGC+AGG - Chr5:82187340-82187359 MsG0580028552.01.T01:CDS 45.0%
! GACTCTGATTTGATGTTGCC+TGG - Chr5:82186642-82186661 MsG0580028552.01.T01:CDS 45.0%
! GCAAAACTTGTTCTAGCGTG+CGG + Chr5:82187340-82187359 None:intergenic 45.0%
! TGCTACTCGTTGTTTCACAG+AGG - Chr5:82186983-82187002 MsG0580028552.01.T01:CDS 45.0%
! TGTTTCACAGAGGTTTTCGG+CGG - Chr5:82186993-82187012 MsG0580028552.01.T01:CDS 45.0%
AACAACGAGTAGCAGAGGAG+GGG + Chr5:82186977-82186996 None:intergenic 50.0%
CGAGCAACTTTCTTTGCTGC+TGG + Chr5:82187248-82187267 None:intergenic 50.0%
CTTTCTTTGCTGCTGGGACT+CGG + Chr5:82187241-82187260 None:intergenic 50.0%
GAAACAACGAGTAGCAGAGG+AGG + Chr5:82186979-82186998 None:intergenic 50.0%
GAGTTTGTCGCGGAAATCTC+AGG - Chr5:82186296-82186315 MsG0580028552.01.T01:CDS 50.0%
GCGAAGTTCATGGTAAGTGC+TGG - Chr5:82186723-82186742 MsG0580028552.01.T01:CDS 50.0%
TCACAGAGTCGTCGCTCAAA+TGG + Chr5:82186936-82186955 None:intergenic 50.0%
TCGATCATGATGTTAGGGCC+AGG + Chr5:82186663-82186682 None:intergenic 50.0%
TGGTCGACATCATCCAATGG+TGG - Chr5:82187274-82187293 MsG0580028552.01.T01:CDS 50.0%
TTCGCTGATGCAGTTGCTGA+TGG - Chr5:82187038-82187057 MsG0580028552.01.T01:CDS 50.0%
! ATCTCAGGGTGGATTCGAAG+TGG - Chr5:82186311-82186330 MsG0580028552.01.T01:CDS 50.0%
! CTGATGGAAGCCCTTCCTTT+TGG - Chr5:82187054-82187073 MsG0580028552.01.T01:CDS 50.0%
! GGATTTGCTTCAGCTGCTGT+TGG - Chr5:82185997-82186016 MsG0580028552.01.T01:CDS 50.0%
!! CATGGTAAGTGCTGGGTTTG+AGG - Chr5:82186731-82186750 MsG0580028552.01.T01:CDS 50.0%
!! CCACTTGGGTGCTGATTCTT+CGG - Chr5:82187133-82187152 MsG0580028552.01.T01:CDS 50.0%
CCGAAGAATCAGCACCCAAG+TGG + Chr5:82187136-82187155 None:intergenic 55.0%
GACATGGCTGATGCAGACGA+AGG - Chr5:82185960-82185979 MsG0580028552.01.T01:CDS 55.0%
GCTACGTCGCTTCTGCATGT+AGG - Chr5:82187309-82187328 MsG0580028552.01.T01:CDS 55.0%
GGCTGATGCAGACGAAGGTA+TGG - Chr5:82185965-82185984 MsG0580028552.01.T01:CDS 55.0%
TGCTTCAGCTGCTGTTGGAC+TGG - Chr5:82186002-82186021 MsG0580028552.01.T01:CDS 55.0%
TTGTCGCGGAAATCTCAGGG+TGG - Chr5:82186300-82186319 MsG0580028552.01.T01:CDS 55.0%
!! GGGTGCTGATTCTTCGGTGA+AGG - Chr5:82187139-82187158 MsG0580028552.01.T01:CDS 55.0%
Chromosome Type Strat End Strand Name
Chr5 gene 82185895 82187574 82185895 ID=MsG0580028552.01;Name=MsG0580028552.01
Chr5 mRNA 82185895 82187574 82185895 ID=MsG0580028552.01.T01;Parent=MsG0580028552.01;Name=MsG0580028552.01.T01;_AED=0.50;_eAED=0.50;_QI=0|-1|0|1|-1|1|1|0|559
Chr5 exon 82185895 82187574 82185895 ID=MsG0580028552.01.T01:exon:18941;Parent=MsG0580028552.01.T01
Chr5 CDS 82185895 82187574 82185895 ID=MsG0580028552.01.T01:cds;Parent=MsG0580028552.01.T01
Gene Sequence

>MsG0580028552.01.T01

ATGCAAAACTCATTAACACACTGTATAAGGAAGAACATGACAGTGGACATGTTCCTCAGAATTCAGACATGGCTGATGCAGACGAAGGTATGGAGATTTGTCGGATTTGCTTCAGCTGCTGTTGGACTGGTTTGTTATACTCTAAGCTCTTCCTTCAACTATCTTTTTGGTAGTTGGAATTTGTTGAAGATAATTCTTTACACTGTTTTCAGTTTCATCATTTGCATCATGATTTTGTATGAAAATATATGGAAACAGTCTAGAAGTCTTCGGTTCAAAGCTCATACAGCTTTTTTAGTATTGACAATCACCTCTGTCTATTCGTTTTACTTCGATAAAGTGAACGGAAAACCAGATGCATATAGCCTCATTTCTTGTGCTGCCTTTGCTATCATGTCACTGAGTTTGTCGCGGAAATCTCAGGGTGGATTCGAAGTGGATCTTCTTTACTTTTTTCTCGGATGTCTAACTTTGCTACTCATGAAGATTAAGTTGCAGTTATTTATTATTGGAGCAGGTTTGAGTTACTCCGTTATCATTTTTCATTCTTCCTTTTCTTCTGTAGAAGAAATTGGATTCTTTGAATTCCAAGATGAAAATTCGGTAATTATTGATGTAGATTCGCAACAACTAGCTAATACTGATATTGCTAGTACAATTGAACAACTAAAAAATTATCTTAACATGCTTCAGCAGAAAAATTTGAACGTCGTCGACATGCTTTTGAAGCATGTGAATGAATATGATGACTCTGATTTGATGTTGCCTGGCCCTAACATCATGATCGATGAGTTGCCTCCAGATTTGATCAACTCCCTTCATGAAACCGCGAAGTTCATGGTAAGTGCTGGGTTTGAGGAAGAGTTTTCTAATGTATACATCCATTGCAGAAGGAAATGTTTGGAGGAGTGTCTAATCAATAGATTATTCGGATTGCAGAAGATTAACATCGGGAATGAAAATCAAAGGGCGAGATATGTAGATATTGTGATTAAAAAATGGATCACAGCATCAGAAATCGCTCTTAAGATTCTATTTCCATTTGAGCGACGACTCTGTGATCATGTCTTTTCAGGTTTCCCCTCCTCTGCTACTCGTTGTTTCACAGAGGTTTTCGGCGGAGCAACGTTTCAGCTTCTGAATTTCGCTGATGCAGTTGCTGATGGAAGCCCTTCCTTTTGGTGTTTATTCAAAATGCTCGCAGTCTTTGAGACATTGCATTATTTGATATCGAAATTCCACTTGGGTGCTGATTCTTCGGTGAAGGAAGCTGCAGTTACAGTCCAAAACAGATTAGGAGAAGCAATCAGGGACCTTTTCTTGAAACTAAATTATCTGACGTTCCGAGTCCCAGCAGCAAAGAAAGTTGCTCGGTCTGATGGTCGACATCATCCAATGGTGGTCCAGATCATTAGCTACGTCGCTTCTGCATGTAGGTCACGCCGCACGCTAGAACAAGTTTTGCAGGAATATCCCAAGGTGAATAATGGAGTAGTACTGAAAGAATCTTTTATACAACAGATGAAATGGATAATGGATATGTTAGAGAAAAGATTGAACTGTAAATCCAAAGAGTACAGAGACCTTGCTTTGCGCAATCTTTTCATGATGAACAATAGGAGGCACATAGAAGATTTAATTAAAAGGTGGGATTTGGAAACCATATTTGGTAACGATTGA

Protein sequence

>MsG0580028552.01.T01

MQNSLTHCIRKNMTVDMFLRIQTWLMQTKVWRFVGFASAAVGLVCYTLSSSFNYLFGSWNLLKIILYTVFSFIICIMILYENIWKQSRSLRFKAHTAFLVLTITSVYSFYFDKVNGKPDAYSLISCAAFAIMSLSLSRKSQGGFEVDLLYFFLGCLTLLLMKIKLQLFIIGAGLSYSVIIFHSSFSSVEEIGFFEFQDENSVIIDVDSQQLANTDIASTIEQLKNYLNMLQQKNLNVVDMLLKHVNEYDDSDLMLPGPNIMIDELPPDLINSLHETAKFMVSAGFEEEFSNVYIHCRRKCLEECLINRLFGLQKINIGNENQRARYVDIVIKKWITASEIALKILFPFERRLCDHVFSGFPSSATRCFTEVFGGATFQLLNFADAVADGSPSFWCLFKMLAVFETLHYLISKFHLGADSSVKEAAVTVQNRLGEAIRDLFLKLNYLTFRVPAAKKVARSDGRHHPMVVQIISYVASACRSRRTLEQVLQEYPKVNNGVVLKESFIQQMKWIMDMLEKRLNCKSKEYRDLALRNLFMMNNRRHIEDLIKRWDLETIFGND*