Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008180.01.T01 | XP_013442920.1 | 95.286 | 297 | 14 | 0 | 1 | 297 | 1 | 297 | 0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008180.01.T01 | Q7M443 | 36.545 | 301 | 157 | 13 | 4 | 297 | 2 | 275 | 4.28E-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008180.01.T01 | G7IG38 | 95.286 | 297 | 14 | 0 | 1 | 297 | 1 | 297 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001029.01 | MsG0280008180.01 | 0.807498 | 4.909196e-50 | 2.738675e-47 |
| MsG0180003237.01 | MsG0280008180.01 | 0.818257 | 2.154080e-52 | 1.604289e-49 |
| MsG0180003320.01 | MsG0280008180.01 | 0.815116 | 1.090286e-51 | 7.450440e-49 |
| MsG0180004424.01 | MsG0280008180.01 | 0.837280 | 5.706815e-57 | 7.376419e-54 |
| MsG0180005059.01 | MsG0280008180.01 | 0.829189 | 5.915391e-55 | 6.010788e-52 |
| MsG0180005130.01 | MsG0280008180.01 | 0.852384 | 4.783046e-61 | 9.977161e-58 |
| MsG0180005143.01 | MsG0280008180.01 | 0.849725 | 2.689421e-60 | 5.146099e-57 |
| MsG0180006195.01 | MsG0280008180.01 | 0.825332 | 4.967010e-54 | 4.513853e-51 |
| MsG0280007513.01 | MsG0280008180.01 | 0.814910 | 1.211188e-51 | 8.230646e-49 |
| MsG0280007670.01 | MsG0280008180.01 | 0.803566 | 3.280085e-49 | 1.653844e-46 |
| MsG0280007677.01 | MsG0280008180.01 | 0.841729 | 3.981728e-58 | 5.903444e-55 |
| MsG0280007689.01 | MsG0280008180.01 | 0.801414 | 9.105583e-49 | 4.345845e-46 |
| MsG0280007869.01 | MsG0280008180.01 | 0.808463 | 3.059090e-50 | 1.750324e-47 |
| MsG0280007910.01 | MsG0280008180.01 | 0.802280 | 6.047396e-49 | 2.950443e-46 |
| MsG0280008178.01 | MsG0280008180.01 | 0.938204 | 9.895949e-99 | 9.401255e-94 |
| MsG0280008180.01 | MsG0280010623.01 | 0.823246 | 1.535872e-53 | 1.315236e-50 |
| MsG0280008180.01 | MsG0280010926.01 | -0.800437 | 1.442060e-48 | 6.714531e-46 |
| MsG0280008180.01 | MsG0380013212.01 | 0.826198 | 3.094378e-54 | 2.882279e-51 |
| MsG0280008180.01 | MsG0380013213.01 | 0.843023 | 1.808191e-58 | 2.791902e-55 |
| MsG0280008180.01 | MsG0380015659.01 | 0.809688 | 1.672162e-50 | 9.883450e-48 |
| MsG0280008180.01 | MsG0380016299.01 | 0.801567 | 8.473364e-49 | 4.059671e-46 |
| MsG0280008180.01 | MsG0380016836.01 | -0.811214 | 7.830144e-51 | 4.818375e-48 |
| MsG0280008180.01 | MsG0380017976.01 | -0.807939 | 3.955653e-50 | 2.232175e-47 |
| MsG0280008180.01 | MsG0480018617.01 | 0.804224 | 2.393168e-49 | 1.227113e-46 |
| MsG0280008180.01 | MsG0480018621.01 | 0.804232 | 2.384156e-49 | 1.222723e-46 |
| MsG0280008180.01 | MsG0480018692.01 | 0.834835 | 2.382028e-56 | 2.860640e-53 |
| MsG0280008180.01 | MsG0480018693.01 | 0.815866 | 7.422382e-52 | 5.177569e-49 |
| MsG0280008180.01 | MsG0480018697.01 | 0.835643 | 1.488952e-56 | 1.831929e-53 |
| MsG0280008180.01 | MsG0480019146.01 | 0.801877 | 7.317088e-49 | 3.533627e-46 |
| MsG0280008180.01 | MsG0480019322.01 | 0.806564 | 7.737457e-50 | 4.213235e-47 |
| MsG0280008180.01 | MsG0480019346.01 | 0.817433 | 3.306352e-52 | 2.407617e-49 |
| MsG0280008180.01 | MsG0480019348.01 | 0.814466 | 1.518635e-51 | 1.019812e-48 |
| MsG0280008180.01 | MsG0480020285.01 | 0.828650 | 7.988505e-55 | 7.989498e-52 |
| MsG0280008180.01 | MsG0480020753.01 | -0.802321 | 5.928867e-49 | 2.895821e-46 |
| MsG0280008180.01 | MsG0480020904.01 | 0.805551 | 1.263783e-49 | 6.705363e-47 |
| MsG0280008180.01 | MsG0480021133.01 | 0.805035 | 1.620821e-49 | 8.486700e-47 |
| MsG0280008180.01 | MsG0480021640.01 | 0.801038 | 1.087185e-48 | 5.140153e-46 |
| MsG0280008180.01 | MsG0480021682.01 | -0.804556 | 2.041077e-49 | 1.055578e-46 |
| MsG0280008180.01 | MsG0580024994.01 | 0.819474 | 1.139499e-52 | 8.777978e-50 |
| MsG0280008180.01 | MsG0580025007.01 | 0.813873 | 2.053620e-51 | 1.357015e-48 |
| MsG0280008180.01 | MsG0580025024.01 | 0.839799 | 1.276626e-57 | 1.782677e-54 |
| MsG0280008180.01 | MsG0580025193.01 | 0.802083 | 6.637649e-49 | 3.222203e-46 |
| MsG0280008180.01 | MsG0580025965.01 | 0.809624 | 1.725739e-50 | 1.018331e-47 |
| MsG0280008180.01 | MsG0580026521.01 | 0.814692 | 1.353446e-51 | 9.143940e-49 |
| MsG0280008180.01 | MsG0580027751.01 | 0.818782 | 1.637374e-52 | 1.237359e-49 |
| MsG0280008180.01 | MsG0580027752.01 | 0.813550 | 2.418963e-51 | 1.584538e-48 |
| MsG0280008180.01 | MsG0580027753.01 | 0.831001 | 2.137750e-55 | 2.289980e-52 |
| MsG0280008180.01 | MsG0580029291.01 | 0.831990 | 1.220265e-55 | 1.346092e-52 |
| MsG0280008180.01 | MsG0580029937.01 | 0.819065 | 1.412628e-52 | 1.075857e-49 |
| MsG0280008180.01 | MsG0580029938.01 | 0.841903 | 3.583447e-58 | 5.342029e-55 |
| MsG0280008180.01 | MsG0680030379.01 | 0.814875 | 1.233188e-51 | 8.372164e-49 |
| MsG0280008180.01 | MsG0680032026.01 | 0.807687 | 4.475197e-50 | 2.508776e-47 |
| MsG0280008180.01 | MsG0680032461.01 | 0.836143 | 1.112222e-56 | 1.389323e-53 |
| MsG0280008180.01 | MsG0680032932.01 | 0.820166 | 7.917998e-53 | 6.218424e-50 |
| MsG0280008180.01 | MsG0680034974.01 | 0.813315 | 2.723320e-51 | 1.772515e-48 |
| MsG0280008180.01 | MsG0780036376.01 | 0.855578 | 5.741720e-62 | 1.331739e-58 |
| MsG0280008180.01 | MsG0780036839.01 | 0.802173 | 6.360270e-49 | 3.094617e-46 |
| MsG0280008180.01 | MsG0780038313.01 | 0.824574 | 7.499607e-54 | 6.669273e-51 |
| MsG0280008180.01 | MsG0780038519.01 | 0.807932 | 3.969063e-50 | 2.239289e-47 |
| MsG0280008180.01 | MsG0780039923.01 | 0.808431 | 3.107924e-50 | 1.776760e-47 |
| MsG0280008180.01 | MsG0780040615.01 | 0.802076 | 6.660284e-49 | 3.232556e-46 |
| MsG0280008180.01 | MsG0780041447.01 | 0.821354 | 4.220802e-53 | 3.425851e-50 |
| MsG0280008180.01 | MsG0880042642.01 | 0.830982 | 2.161320e-55 | 2.313944e-52 |
| MsG0280008180.01 | MsG0880042728.01 | 0.811901 | 5.552546e-51 | 3.479314e-48 |
| MsG0280008180.01 | MsG0880043997.01 | 0.804351 | 2.252110e-49 | 1.158612e-46 |
| MsG0280008180.01 | MsG0880044026.01 | 0.816543 | 5.237708e-52 | 3.721900e-49 |
| MsG0280008180.01 | MsG0880044028.01 | 0.802047 | 6.751536e-49 | 3.274441e-46 |
| MsG0280008180.01 | MsG0880044312.01 | -0.802053 | 6.734516e-49 | 3.266670e-46 |
| MsG0280008180.01 | MsG0880045801.01 | 0.833538 | 5.035055e-56 | 5.816054e-53 |
| MsG0280008180.01 | MsG0880045854.01 | 0.808045 | 3.756438e-50 | 2.125646e-47 |
| MsG0280008180.01 | MsG0880046038.01 | 0.810471 | 1.133770e-50 | 6.840321e-48 |
| MsG0280008180.01 | MsG0880046768.01 | 0.819951 | 8.866791e-53 | 6.921932e-50 |
| MsG0280008180.01 | MsG0880046946.01 | 0.817918 | 2.569620e-52 | 1.896152e-49 |
| MsG0280008180.01 | MsG0880047259.01 | 0.817477 | 3.231969e-52 | 2.356310e-49 |
| MsG0280008180.01 | MsG0880047312.01 | 0.825097 | 5.643004e-54 | 5.094086e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280008180.01.T01 | MTR_0062s0090 | 95.286 | 297 | 14 | 0 | 1 | 297 | 1 | 297 | 0.0 | 588 |
| MsG0280008180.01.T01 | MTR_0062s0040 | 95.286 | 297 | 14 | 0 | 1 | 297 | 1 | 297 | 0.0 | 588 |
| MsG0280008180.01.T01 | MTR_0062s0060 | 95.286 | 297 | 14 | 0 | 1 | 297 | 1 | 297 | 0.0 | 588 |
| MsG0280008180.01.T01 | MTR_0062s0020 | 63.333 | 300 | 104 | 4 | 1 | 296 | 1 | 298 | 5.33e-135 | 384 |
| MsG0280008180.01.T01 | MTR_0443s0040 | 45.246 | 305 | 143 | 10 | 3 | 295 | 15 | 307 | 1.79e-75 | 233 |
| MsG0280008180.01.T01 | MTR_0002s1060 | 45.973 | 298 | 139 | 10 | 4 | 295 | 16 | 297 | 4.54e-71 | 222 |
| MsG0280008180.01.T01 | MTR_0062s0170 | 42.475 | 299 | 158 | 6 | 4 | 295 | 15 | 306 | 7.48e-69 | 216 |
| MsG0280008180.01.T01 | MTR_0062s0110 | 42.475 | 299 | 158 | 6 | 4 | 295 | 15 | 306 | 7.48e-69 | 216 |
| MsG0280008180.01.T01 | MTR_0062s0130 | 42.475 | 299 | 158 | 6 | 4 | 295 | 15 | 306 | 7.48e-69 | 216 |
| MsG0280008180.01.T01 | MTR_2g036240 | 42.475 | 299 | 158 | 6 | 4 | 295 | 15 | 306 | 7.48e-69 | 216 |
| MsG0280008180.01.T01 | MTR_2g036260 | 42.475 | 299 | 158 | 6 | 4 | 295 | 15 | 306 | 7.48e-69 | 216 |
| MsG0280008180.01.T01 | MTR_2g036290 | 42.475 | 299 | 158 | 6 | 4 | 295 | 15 | 306 | 7.48e-69 | 216 |
| MsG0280008180.01.T01 | MTR_8g046730 | 42.475 | 299 | 158 | 6 | 4 | 295 | 15 | 306 | 7.48e-69 | 216 |
| MsG0280008180.01.T01 | MTR_0002s0040 | 42.808 | 292 | 151 | 7 | 4 | 295 | 15 | 290 | 1.97e-68 | 215 |
| MsG0280008180.01.T01 | MTR_0263s0020 | 43.345 | 293 | 144 | 8 | 4 | 293 | 15 | 288 | 6.99e-67 | 211 |
| MsG0280008180.01.T01 | MTR_1457s0010 | 41.284 | 218 | 108 | 8 | 58 | 273 | 1 | 200 | 1.54e-42 | 145 |
| MsG0280008180.01.T01 | MTR_2g096030 | 38.078 | 281 | 142 | 14 | 2 | 274 | 29 | 285 | 5.75e-42 | 147 |
| MsG0280008180.01.T01 | MTR_6g079630 | 35.842 | 279 | 147 | 13 | 4 | 274 | 34 | 288 | 7.17e-38 | 136 |
| MsG0280008180.01.T01 | MTR_2g096040 | 32.841 | 271 | 158 | 11 | 1 | 266 | 1 | 252 | 1.71e-25 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 69 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAGAATTCCACTTCATTT+TGG | 0.093829 | 2:+26799331 | MsG0280008180.01.T01:CDS |
| TTCAAATTTCTCACTGCTTC+TGG | 0.128250 | 2:-26799434 | None:intergenic |
| AGCCATTCTCAACAAATTTA+AGG | 0.166592 | 2:+26799276 | MsG0280008180.01.T01:CDS |
| AAAATGAGGCCAATATAAAT+TGG | 0.218265 | 2:+26799801 | MsG0280008180.01.T01:CDS |
| GAGAATGTCTAAAATCTTTC+GGG | 0.256008 | 2:+26799238 | None:intergenic |
| AACGAAAGGTTTATTCTCAT+TGG | 0.271867 | 2:-26800077 | None:intergenic |
| CTTATTACCACCTTCACATT+TGG | 0.282214 | 2:-26799467 | None:intergenic |
| TGAGAATGTCTAAAATCTTT+CGG | 0.303326 | 2:+26799237 | None:intergenic |
| GAAGTGGAATTCTGAGATAT+TGG | 0.303944 | 2:-26799324 | None:intergenic |
| GTAGTTAACCCAATTTATAT+TGG | 0.311688 | 2:-26799810 | None:intergenic |
| TCCCTTAAATTTGTTGAGAA+TGG | 0.328006 | 2:-26799278 | None:intergenic |
| CCAAGGGAGCACTTCATTGC+TGG | 0.335528 | 2:+26799977 | MsG0280008180.01.T01:CDS |
| GCCATTCTCAACAAATTTAA+GGG | 0.342684 | 2:+26799277 | MsG0280008180.01.T01:CDS |
| TACCAGGGAGTGATGCTATC+TGG | 0.345229 | 2:-26800015 | None:intergenic |
| AATGCCATCAATTATGTTGC+CGG | 0.364218 | 2:-26799603 | None:intergenic |
| ATCCAGATAGTTTCCTCAAC+AGG | 0.369815 | 2:-26799527 | None:intergenic |
| ATCCTGTTGAGGAAACTATC+TGG | 0.376187 | 2:+26799525 | MsG0280008180.01.T01:CDS |
| AAACCTAGTGTAGTCCTTCC+AGG | 0.379308 | 2:+26799911 | MsG0280008180.01.T01:CDS |
| GTTTAGATTGGTTGTAGAAC+TGG | 0.408788 | 2:-26799832 | None:intergenic |
| GACCTGTGTCACCTGTAGTA+TGG | 0.420193 | 2:-26799649 | None:intergenic |
| TCCCTTGGCATCTTGTCTAC+AGG | 0.422781 | 2:-26799962 | None:intergenic |
| ACGAAAGGTTTATTCTCATT+GGG | 0.427989 | 2:-26800076 | None:intergenic |
| TCCACTACCGCAACTTGTAT+TGG | 0.430990 | 2:+26799777 | MsG0280008180.01.T01:CDS |
| AGCTTGTCGGTGCTAACTCC+TGG | 0.441987 | 2:-26799929 | None:intergenic |
| GCCAATACAAGTTGCGGTAG+TGG | 0.444051 | 2:-26799778 | None:intergenic |
| CCAGCAATGAAGTGCTCCCT+TGG | 0.447592 | 2:-26799977 | None:intergenic |
| GTTTCCTCAACAGGATTGAA+TGG | 0.450198 | 2:-26799518 | None:intergenic |
| AAATGAGGCCAATATAAATT+GGG | 0.460346 | 2:+26799802 | MsG0280008180.01.T01:CDS |
| GTAGTGGATTTCATTGGTCT+CGG | 0.464555 | 2:-26799762 | None:intergenic |
| GTGTGGATACAGGTTTAGAT+TGG | 0.466973 | 2:-26799844 | None:intergenic |
| GTTGCGGTAGTGGATTTCAT+TGG | 0.476031 | 2:-26799768 | None:intergenic |
| CAAACCGGCAACATAATTGA+TGG | 0.487574 | 2:+26799599 | MsG0280008180.01.T01:CDS |
| GTTTGTAGTTTCTTGATACC+TGG | 0.496915 | 2:-26799892 | None:intergenic |
| ACTTGGAATACTAGAGCATT+CGG | 0.502901 | 2:+26799410 | MsG0280008180.01.T01:CDS |
| AGAAGCAGTGAGAAATTTGA+AGG | 0.503117 | 2:+26799436 | MsG0280008180.01.T01:CDS |
| AAGTCGTCAAGTGTGGATAC+AGG | 0.506124 | 2:-26799854 | None:intergenic |
| GGTTTATTCTCATTGGGTAG+AGG | 0.508257 | 2:-26800070 | None:intergenic |
| AGGCTCAATGTGAAGCTTGT+CGG | 0.519403 | 2:-26799942 | None:intergenic |
| TGGATTTCATTGGTCTCGGA+TGG | 0.520530 | 2:-26799758 | None:intergenic |
| GAGTATGACGCTCAAAATAG+AGG | 0.525674 | 2:+26799368 | MsG0280008180.01.T01:CDS |
| CTTAACGTCTTCCATACTAC+AGG | 0.526898 | 2:+26799638 | MsG0280008180.01.T01:CDS |
| TATAACTTGCCCTATGCACC+TGG | 0.529459 | 2:-26799684 | None:intergenic |
| GTGAAGGTGGTAATAAGCAT+TGG | 0.530420 | 2:+26799473 | MsG0280008180.01.T01:CDS |
| GACGCTCAAAATAGAGGCAC+AGG | 0.531681 | 2:+26799374 | MsG0280008180.01.T01:CDS |
| TATCTGGATTACGCGGGCTG+TGG | 0.534790 | 2:+26799541 | MsG0280008180.01.T01:CDS |
| AACTCCATTCAATCCTGTTG+AGG | 0.541015 | 2:+26799514 | MsG0280008180.01.T01:CDS |
| ACTCACGAGATTAACTTATG+AGG | 0.542547 | 2:-26800123 | None:intergenic |
| CTCCAGATAGCATCACTCCC+TGG | 0.543202 | 2:+26800013 | MsG0280008180.01.T01:CDS |
| AAAATCTTTCGGGAATACAT+TGG | 0.558429 | 2:+26799248 | MsG0280008180.01.T01:CDS |
| GGGAAATAATCCAAATGTGA+AGG | 0.562461 | 2:+26799457 | MsG0280008180.01.T01:CDS |
| AAGATATCCTCTAAAACGAA+AGG | 0.564294 | 2:-26800091 | None:intergenic |
| ATTGGTCTCGGATGGAGCAA+TGG | 0.568409 | 2:-26799750 | None:intergenic |
| CAACTTGTATTGGCAAAATG+AGG | 0.568523 | 2:+26799787 | MsG0280008180.01.T01:CDS |
| CACGAGATTAACTTATGAGG+AGG | 0.580594 | 2:-26800120 | None:intergenic |
| CTTTCTAAAACACTATGACC+AGG | 0.587302 | 2:+26799874 | MsG0280008180.01.T01:CDS |
| TGGCAAAGCCCAAAATGAAG+TGG | 0.590379 | 2:-26799340 | None:intergenic |
| AAGGTGGTAATAAGCATTGG+AGG | 0.601267 | 2:+26799476 | MsG0280008180.01.T01:CDS |
| AGCCTGTAGACAAGATGCCA+AGG | 0.602389 | 2:+26799960 | MsG0280008180.01.T01:CDS |
| AAATAATCCAAATGTGAAGG+TGG | 0.620554 | 2:+26799460 | MsG0280008180.01.T01:CDS |
| TGTCGGTGCTAACTCCTGGA+AGG | 0.636397 | 2:-26799925 | None:intergenic |
| TTCCATACTACAGGTGACAC+AGG | 0.642642 | 2:+26799647 | MsG0280008180.01.T01:CDS |
| ACTCCTGGAAGGACTACACT+AGG | 0.646709 | 2:-26799914 | None:intergenic |
| AGGAAACTATCTGGATTACG+CGG | 0.653571 | 2:+26799534 | MsG0280008180.01.T01:CDS |
| CTATGCACCTGGCAAAACGA+AGG | 0.654236 | 2:-26799673 | None:intergenic |
| GCCTGTAGACAAGATGCCAA+GGG | 0.657771 | 2:+26799961 | MsG0280008180.01.T01:CDS |
| GAAGCAGTGAGAAATTTGAA+GGG | 0.658608 | 2:+26799437 | MsG0280008180.01.T01:CDS |
| GGAAACTATCTGGATTACGC+GGG | 0.674836 | 2:+26799535 | MsG0280008180.01.T01:CDS |
| CAGGGAGTGATGCTATCTGG+AGG | 0.684672 | 2:-26800012 | None:intergenic |
| TTGAGCGTCATACTCCTCAG+TGG | 0.713125 | 2:-26799360 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | AAAATGAGGCCAATATAAAT+TGG | + | Chr2:26799801-26799820 | MsG0280008180.01.T01:CDS | 25.0% |
| ! | AAATGAGGCCAATATAAATT+GGG | + | Chr2:26799802-26799821 | MsG0280008180.01.T01:CDS | 25.0% |
| ! | GTAGTTAACCCAATTTATAT+TGG | - | Chr2:26799813-26799832 | None:intergenic | 25.0% |
| !!! | TTGGTTTTGATTATTTGAAC+TGG | - | Chr2:26799308-26799327 | None:intergenic | 25.0% |
| AAAATCTTTCGGGAATACAT+TGG | + | Chr2:26799248-26799267 | MsG0280008180.01.T01:CDS | 30.0% | |
| AAATAATCCAAATGTGAAGG+TGG | + | Chr2:26799460-26799479 | MsG0280008180.01.T01:CDS | 30.0% | |
| AACGAAAGGTTTATTCTCAT+TGG | - | Chr2:26800080-26800099 | None:intergenic | 30.0% | |
| ACGAAAGGTTTATTCTCATT+GGG | - | Chr2:26800079-26800098 | None:intergenic | 30.0% | |
| AGCCATTCTCAACAAATTTA+AGG | + | Chr2:26799276-26799295 | MsG0280008180.01.T01:CDS | 30.0% | |
| AGTGATCATCCAAAAATACA+AGG | + | Chr2:26799574-26799593 | MsG0280008180.01.T01:CDS | 30.0% | |
| CAAAAATACAAGGATCAAAC+CGG | + | Chr2:26799584-26799603 | MsG0280008180.01.T01:CDS | 30.0% | |
| GCCATTCTCAACAAATTTAA+GGG | + | Chr2:26799277-26799296 | MsG0280008180.01.T01:CDS | 30.0% | |
| ! | GAATAAACCTTTCGTTTTAG+AGG | + | Chr2:26800084-26800103 | MsG0280008180.01.T01:CDS | 30.0% |
| ! | TCAGAATTCCACTTCATTTT+GGG | + | Chr2:26799332-26799351 | MsG0280008180.01.T01:CDS | 30.0% |
| !! | AAGATATCCTCTAAAACGAA+AGG | - | Chr2:26800094-26800113 | None:intergenic | 30.0% |
| !! | AGGATTGAATGGAGTTTTAA+CGG | - | Chr2:26799510-26799529 | None:intergenic | 30.0% |
| !! | TCCCTTAAATTTGTTGAGAA+TGG | - | Chr2:26799281-26799300 | None:intergenic | 30.0% |
| AATGCCATCAATTATGTTGC+CGG | - | Chr2:26799606-26799625 | None:intergenic | 35.0% | |
| AGAAGCAGTGAGAAATTTGA+AGG | + | Chr2:26799436-26799455 | MsG0280008180.01.T01:CDS | 35.0% | |
| CGTTCCAAAGAAAAATACCA+GGG | - | Chr2:26800033-26800052 | None:intergenic | 35.0% | |
| CTTATTACCACCTTCACATT+TGG | - | Chr2:26799470-26799489 | None:intergenic | 35.0% | |
| GAAGCAGTGAGAAATTTGAA+GGG | + | Chr2:26799437-26799456 | MsG0280008180.01.T01:CDS | 35.0% | |
| GGGAAATAATCCAAATGTGA+AGG | + | Chr2:26799457-26799476 | MsG0280008180.01.T01:CDS | 35.0% | |
| GTTTGTAGTTTCTTGATACC+TGG | - | Chr2:26799895-26799914 | None:intergenic | 35.0% | |
| TTCAAATTTCTCACTGCTTC+TGG | - | Chr2:26799437-26799456 | None:intergenic | 35.0% | |
| ! | ACTTGGAATACTAGAGCATT+CGG | + | Chr2:26799410-26799429 | MsG0280008180.01.T01:CDS | 35.0% |
| ! | CAACTTGTATTGGCAAAATG+AGG | + | Chr2:26799787-26799806 | MsG0280008180.01.T01:CDS | 35.0% |
| ! | CATTTTGCCAATACAAGTTG+CGG | - | Chr2:26799787-26799806 | None:intergenic | 35.0% |
| ! | CGGTTTGATCCTTGTATTTT+TGG | - | Chr2:26799586-26799605 | None:intergenic | 35.0% |
| ! | CTCAGAATTCCACTTCATTT+TGG | + | Chr2:26799331-26799350 | MsG0280008180.01.T01:CDS | 35.0% |
| ! | GTTTAGATTGGTTGTAGAAC+TGG | - | Chr2:26799835-26799854 | None:intergenic | 35.0% |
| !! | CTTTCTAAAACACTATGACC+AGG | + | Chr2:26799874-26799893 | MsG0280008180.01.T01:CDS | 35.0% |
| !! | GAAGTGGAATTCTGAGATAT+TGG | - | Chr2:26799327-26799346 | None:intergenic | 35.0% |
| !! | TTTTAGAAAGTCGTCAAGTG+TGG | - | Chr2:26799864-26799883 | None:intergenic | 35.0% |
| AACTCCATTCAATCCTGTTG+AGG | + | Chr2:26799514-26799533 | MsG0280008180.01.T01:CDS | 40.0% | |
| AGGAAACTATCTGGATTACG+CGG | + | Chr2:26799534-26799553 | MsG0280008180.01.T01:CDS | 40.0% | |
| ATCCAGATAGTTTCCTCAAC+AGG | - | Chr2:26799530-26799549 | None:intergenic | 40.0% | |
| ATCCTGTTGAGGAAACTATC+TGG | + | Chr2:26799525-26799544 | MsG0280008180.01.T01:CDS | 40.0% | |
| CAAACCGGCAACATAATTGA+TGG | + | Chr2:26799599-26799618 | MsG0280008180.01.T01:CDS | 40.0% | |
| CTTAACGTCTTCCATACTAC+AGG | + | Chr2:26799638-26799657 | MsG0280008180.01.T01:CDS | 40.0% | |
| GAGTATGACGCTCAAAATAG+AGG | + | Chr2:26799368-26799387 | MsG0280008180.01.T01:CDS | 40.0% | |
| GCGTTCCAAAGAAAAATACC+AGG | - | Chr2:26800034-26800053 | None:intergenic | 40.0% | |
| GGTTTATTCTCATTGGGTAG+AGG | - | Chr2:26800073-26800092 | None:intergenic | 40.0% | |
| GTGAAGGTGGTAATAAGCAT+TGG | + | Chr2:26799473-26799492 | MsG0280008180.01.T01:CDS | 40.0% | |
| GTGTGGATACAGGTTTAGAT+TGG | - | Chr2:26799847-26799866 | None:intergenic | 40.0% | |
| GTTTCCTCAACAGGATTGAA+TGG | - | Chr2:26799521-26799540 | None:intergenic | 40.0% | |
| ! | CACTCCCTGGTATTTTTCTT+TGG | + | Chr2:26800026-26800045 | MsG0280008180.01.T01:CDS | 40.0% |
| !! | AAGGTGGTAATAAGCATTGG+AGG | + | Chr2:26799476-26799495 | MsG0280008180.01.T01:CDS | 40.0% |
| !! | CAGGAGTTTTCAAGGAAACT+TGG | + | Chr2:26799393-26799412 | MsG0280008180.01.T01:CDS | 40.0% |
| !! | GTAGTGGATTTCATTGGTCT+CGG | - | Chr2:26799765-26799784 | None:intergenic | 40.0% |
| AAACCTAGTGTAGTCCTTCC+AGG | + | Chr2:26799911-26799930 | MsG0280008180.01.T01:CDS | 45.0% | |
| AAGTCGTCAAGTGTGGATAC+AGG | - | Chr2:26799857-26799876 | None:intergenic | 45.0% | |
| AGGCTCAATGTGAAGCTTGT+CGG | - | Chr2:26799945-26799964 | None:intergenic | 45.0% | |
| GGAAACTATCTGGATTACGC+GGG | + | Chr2:26799535-26799554 | MsG0280008180.01.T01:CDS | 45.0% | |
| TCCACTACCGCAACTTGTAT+TGG | + | Chr2:26799777-26799796 | MsG0280008180.01.T01:CDS | 45.0% | |
| TGGCAAAGCCCAAAATGAAG+TGG | - | Chr2:26799343-26799362 | None:intergenic | 45.0% | |
| TTCCATACTACAGGTGACAC+AGG | + | Chr2:26799647-26799666 | MsG0280008180.01.T01:CDS | 45.0% | |
| ! | TATAACTTGCCCTATGCACC+TGG | - | Chr2:26799687-26799706 | None:intergenic | 45.0% |
| ! | TGGATTTCATTGGTCTCGGA+TGG | - | Chr2:26799761-26799780 | None:intergenic | 45.0% |
| ! | TTCGTTTTGCCAGGTGCATA+GGG | + | Chr2:26799675-26799694 | MsG0280008180.01.T01:CDS | 45.0% |
| !! | GTTGCGGTAGTGGATTTCAT+TGG | - | Chr2:26799771-26799790 | None:intergenic | 45.0% |
| !! | TAGAGGCACAGGAGTTTTCA+AGG | + | Chr2:26799385-26799404 | MsG0280008180.01.T01:CDS | 45.0% |
| ACTCCTGGAAGGACTACACT+AGG | - | Chr2:26799917-26799936 | None:intergenic | 50.0% | |
| AGCCTGTAGACAAGATGCCA+AGG | + | Chr2:26799960-26799979 | MsG0280008180.01.T01:CDS | 50.0% | |
| CTATGCACCTGGCAAAACGA+AGG | - | Chr2:26799676-26799695 | None:intergenic | 50.0% | |
| GACCTGTGTCACCTGTAGTA+TGG | - | Chr2:26799652-26799671 | None:intergenic | 50.0% | |
| GCCAATACAAGTTGCGGTAG+TGG | - | Chr2:26799781-26799800 | None:intergenic | 50.0% | |
| GCCTGTAGACAAGATGCCAA+GGG | + | Chr2:26799961-26799980 | MsG0280008180.01.T01:CDS | 50.0% | |
| TACCAGGGAGTGATGCTATC+TGG | - | Chr2:26800018-26800037 | None:intergenic | 50.0% | |
| TCCCTTGGCATCTTGTCTAC+AGG | - | Chr2:26799965-26799984 | None:intergenic | 50.0% | |
| TTGAGCGTCATACTCCTCAG+TGG | - | Chr2:26799363-26799382 | None:intergenic | 50.0% | |
| ! | ATTGGTCTCGGATGGAGCAA+TGG | - | Chr2:26799753-26799772 | None:intergenic | 50.0% |
| ! | CATTTTGGGCTTTGCCACTG+AGG | + | Chr2:26799346-26799365 | MsG0280008180.01.T01:CDS | 50.0% |
| ! | CTTCGTTTTGCCAGGTGCAT+AGG | + | Chr2:26799674-26799693 | MsG0280008180.01.T01:CDS | 50.0% |
| ! | GACGCTCAAAATAGAGGCAC+AGG | + | Chr2:26799374-26799393 | MsG0280008180.01.T01:CDS | 50.0% |
| CAGGGAGTGATGCTATCTGG+AGG | - | Chr2:26800015-26800034 | None:intergenic | 55.0% | |
| CTCCAGATAGCATCACTCCC+TGG | + | Chr2:26800013-26800032 | MsG0280008180.01.T01:CDS | 55.0% | |
| ! | CAGGTCACCTTCGTTTTGCC+AGG | + | Chr2:26799666-26799685 | MsG0280008180.01.T01:CDS | 55.0% |
| ! | CCAGCAATGAAGTGCTCCCT+TGG | - | Chr2:26799980-26799999 | None:intergenic | 55.0% |
| ! | TATCTGGATTACGCGGGCTG+TGG | + | Chr2:26799541-26799560 | MsG0280008180.01.T01:CDS | 55.0% |
| !! | AGCTTGTCGGTGCTAACTCC+TGG | - | Chr2:26799932-26799951 | None:intergenic | 55.0% |
| !! | CCAAGGGAGCACTTCATTGC+TGG | + | Chr2:26799977-26799996 | MsG0280008180.01.T01:CDS | 55.0% |
| !! | TGTCGGTGCTAACTCCTGGA+AGG | - | Chr2:26799928-26799947 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 26799242 | 26800135 | 26799242 | ID=MsG0280008180.01;Name=MsG0280008180.01 |
| Chr2 | mRNA | 26799242 | 26800135 | 26799242 | ID=MsG0280008180.01.T01;Parent=MsG0280008180.01;Name=MsG0280008180.01.T01;_AED=0.02;_eAED=0.02;_QI=0|-1|0|1|-1|1|1|0|297 |
| Chr2 | exon | 26799242 | 26800135 | 26799242 | ID=MsG0280008180.01.T01:exon:18741;Parent=MsG0280008180.01.T01 |
| Chr2 | CDS | 26799242 | 26800135 | 26799242 | ID=MsG0280008180.01.T01:cds;Parent=MsG0280008180.01.T01 |
| Gene Sequence |
| Protein sequence |
