AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021682.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021682.01.T01 MTR_3g058430 95.213 188 9 0 1 188 1 188 2.07e-115 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021682.01.T01 AT3G13120 64.398 191 65 1 1 188 1 191 3.86e-75 224
MsG0480021682.01.T01 AT3G13120 64.398 191 65 1 1 188 1 191 3.86e-75 224
MsG0480021682.01.T01 AT3G13120 64.398 191 65 1 1 188 1 191 3.86e-75 224

Find 40 sgRNAs with CRISPR-Local

Find 200 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATCTTTGTGCTTTGTTTC+TGG 0.060318 4:+62913739 MsG0480021682.01.T01:CDS
ATAAATCCATGTGCATAATT+TGG 0.219282 4:-62916895 None:intergenic
GACACAGTGAATTCGCTTCT+TGG 0.315569 4:-62916448 None:intergenic
ACCTCAGAATTCAAAGCTTC+AGG 0.320276 4:-62913823 None:intergenic
TGCATCCAGTATCTGCTTGC+AGG 0.346889 4:-62916379 None:intergenic
GCTCTAAATATATTTGCTTC+AGG 0.347187 4:+62916620 MsG0480021682.01.T01:exon
TGTGTACGTGTGGAGATTTA+AGG 0.348074 4:-62916470 None:intergenic
AAGCACAAAGATTGAAGCTT+TGG 0.358455 4:-62913730 None:intergenic
AAACTAACAAAATGATCATT+TGG 0.362526 4:-62916754 None:intergenic
GGATTCCTGCAAGCAGATAC+TGG 0.366808 4:+62916374 MsG0480021682.01.T01:CDS
AGATAACAATGGTGAAGAAT+TGG 0.371117 4:-62913701 None:intergenic
CTTCAGAGAGTTTGTTTCAA+TGG 0.392816 4:+62913630 MsG0480021682.01.T01:exon
TTCTCATTATGTTGTCATCT+AGG 0.397505 4:+62916776 MsG0480021682.01.T01:three_prime_UTR
TTCTTGGTTGGTAAAGGAAC+AGG 0.402200 4:-62916432 None:intergenic
AGACTTACATTACATTGAAT+AGG 0.410551 4:-62916843 None:intergenic
GAATCTATTGTTTGTGCTGT+AGG 0.413081 4:-62916552 None:intergenic
AACTTCAACTTCCTAGTAAT+AGG 0.416007 4:+62916668 MsG0480021682.01.T01:three_prime_UTR
GCAAATATCTATGTGACAAC+AGG 0.420997 4:-62916816 None:intergenic
TTACTTGGTCCCCTTGATAG+AGG 0.436195 4:+62916353 MsG0480021682.01.T01:CDS
AATCAAGCTTAGATCTTACT+TGG 0.443706 4:+62916338 MsG0480021682.01.T01:CDS
TCGACTCATTTCCTATTACT+AGG 0.459472 4:-62916679 None:intergenic
ATTCGCTTCTTGGTTGGTAA+AGG 0.474280 4:-62916438 None:intergenic
ATGCAGCTTGATCTTCCTGC+TGG 0.477604 4:+62916579 MsG0480021682.01.T01:CDS
GATGAGTTCTGATCTCGAAA+TGG 0.486839 4:-62916506 None:intergenic
CTTGCAGGAATCCTCTATCA+AGG 0.519406 4:-62916364 None:intergenic
CAGTGAATTCGCTTCTTGGT+TGG 0.546112 4:-62916444 None:intergenic
TTGGAAGAGACTGAAAGAGA+AGG 0.552691 4:-62913682 None:intergenic
ACTTCGACATCAACGCCAGC+AGG 0.555474 4:-62916594 None:intergenic
CATTGGGGATAATGCAGACA+TGG 0.557328 4:+62914967 MsG0480021682.01.T01:CDS
CACACGTACACAAGGATGCT+CGG 0.558591 4:+62916481 MsG0480021682.01.T01:CDS
AAAGAAATACATTCAGAGAG+TGG 0.565246 4:-62916724 None:intergenic
TCCTGAAGCTTTGAATTCTG+AGG 0.574072 4:+62913822 MsG0480021682.01.T01:CDS
ATTCTTCCAAATTATGCACA+TGG 0.574714 4:+62916889 MsG0480021682.01.T01:three_prime_UTR
TTGCAGGAATCCTCTATCAA+GGG 0.586905 4:-62916363 None:intergenic
TTTGGCTTTGAAGATAACAA+TGG 0.593808 4:-62913712 None:intergenic
CGAGCATCCTTGTGTACGTG+TGG 0.612723 4:-62916480 None:intergenic
ACAACAGTAGACAATTGAAG+AGG 0.619100 4:-62913790 None:intergenic
ATAGGAAATGAGTCGATACT+CGG 0.624257 4:+62916686 MsG0480021682.01.T01:three_prime_UTR
TAAATCTCCACACGTACACA+AGG 0.632451 4:+62916473 MsG0480021682.01.T01:CDS
TGCAGGAATCCTCTATCAAG+GGG 0.633408 4:-62916362 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATATATCACATTAATT+CGG - Chr4:62915443-62915462 None:intergenic 10.0%
!!! TTTAAAGAATTTAAAATTCT+AGG + Chr4:62914570-62914589 MsG0480021682.01.T01:intron 10.0%
!! AAAAAAAATGCATTAAAATC+TGG - Chr4:62915893-62915912 None:intergenic 15.0%
!! AAAATATATCACATTAATTC+GGG - Chr4:62915442-62915461 None:intergenic 15.0%
!! AACAGTGAAATAATAAAATA+AGG - Chr4:62915616-62915635 None:intergenic 15.0%
!! TTATATGTAGTTTAATATGT+TGG + Chr4:62914784-62914803 MsG0480021682.01.T01:intron 15.0%
!!! GAATATTGATTTTGTTTAAT+TGG + Chr4:62913890-62913909 MsG0480021682.01.T01:intron 15.0%
!!! TATTTTATTATTTCACTGTT+TGG + Chr4:62915616-62915635 MsG0480021682.01.T01:intron 15.0%
!! AAACTAACAAAATGATCATT+TGG - Chr4:62916757-62916776 None:intergenic 20.0%
!! AATCTGATTTATATTTGGAT+GGG + Chr4:62914142-62914161 MsG0480021682.01.T01:intron 20.0%
!! AATGCAATCTGATTTATATT+TGG + Chr4:62914137-62914156 MsG0480021682.01.T01:intron 20.0%
!! ACATATTAAATGACTGAAAA+TGG - Chr4:62915074-62915093 None:intergenic 20.0%
!! TGAACATATGAAAAACAATA+GGG + Chr4:62914498-62914517 MsG0480021682.01.T01:intron 20.0%
!! TTGAACATATGAAAAACAAT+AGG + Chr4:62914497-62914516 MsG0480021682.01.T01:intron 20.0%
!!! ATTGATTTTGTTTAATTGGT+TGG + Chr4:62913894-62913913 MsG0480021682.01.T01:intron 20.0%
!!! GCTTAAAGTTAGTATAATTT+TGG + Chr4:62914229-62914248 MsG0480021682.01.T01:intron 20.0%
!!! TAAAGTTAGTATAATTTTGG+AGG + Chr4:62914232-62914251 MsG0480021682.01.T01:intron 20.0%
!!! TTTTCAATCTATTCTTACAT+AGG + Chr4:62914415-62914434 MsG0480021682.01.T01:intron 20.0%
! AACTTTAAGCTAGAATTTGA+AGG - Chr4:62914219-62914238 None:intergenic 25.0%
! AAGAATGAAAACAGCTAAAT+AGG - Chr4:62915710-62915729 None:intergenic 25.0%
! ACAATACAAACATGAAGAAA+AGG - Chr4:62913852-62913871 None:intergenic 25.0%
! AGAATGAAAACAGCTAAATA+GGG - Chr4:62915709-62915728 None:intergenic 25.0%
! AGACTTACATTACATTGAAT+AGG - Chr4:62916846-62916865 None:intergenic 25.0%
! AGCTTACATTGTTAATGAAA+AGG + Chr4:62915565-62915584 MsG0480021682.01.T01:intron 25.0%
! ATAAATCCATGTGCATAATT+TGG - Chr4:62916898-62916917 None:intergenic 25.0%
! ATGTAATAGCAATGAAATCA+TGG + Chr4:62915090-62915109 MsG0480021682.01.T01:intron 25.0%
! CAATACAAACATGAAGAAAA+GGG - Chr4:62913851-62913870 None:intergenic 25.0%
! CAATCTGATTTATATTTGGA+TGG + Chr4:62914141-62914160 MsG0480021682.01.T01:intron 25.0%
! GAACATATGAAAAACAATAG+GGG + Chr4:62914499-62914518 MsG0480021682.01.T01:intron 25.0%
! TCAAACATTTAGAAAAACGT+AGG - Chr4:62914860-62914879 None:intergenic 25.0%
! TCTTTGTGATAAAAATGTCT+TGG + Chr4:62914897-62914916 MsG0480021682.01.T01:intron 25.0%
! TGTAATAGCAATGAAATCAT+GGG + Chr4:62915091-62915110 MsG0480021682.01.T01:intron 25.0%
! TGTTTGATAAGTCAAGTAAT+AGG + Chr4:62915250-62915269 MsG0480021682.01.T01:intron 25.0%
! TTACAAATTGAGTGTATGTT+TGG - Chr4:62915226-62915245 None:intergenic 25.0%
!! GAGTTAACTGATGATTTTTA+TGG + Chr4:62916204-62916223 MsG0480021682.01.T01:intron 25.0%
!! GGTTTATATTTGTTTGCTTT+TGG + Chr4:62915021-62915040 MsG0480021682.01.T01:intron 25.0%
!! TTAACTGATGATTTTTATGG+AGG + Chr4:62916207-62916226 MsG0480021682.01.T01:intron 25.0%
!! TTTTTCATCCAAAAAATCGA+AGG + Chr4:62915538-62915557 MsG0480021682.01.T01:intron 25.0%
!! TTTTTGGATGAAAAAAGTGA+TGG - Chr4:62915533-62915552 None:intergenic 25.0%
!!! AAAAATGTCTTGGTGTTTTT+AGG + Chr4:62914907-62914926 MsG0480021682.01.T01:intron 25.0%
!!! AATTTTGGCTTATGTAAAAG+TGG + Chr4:62914087-62914106 MsG0480021682.01.T01:intron 25.0%
!!! GATTTGCTATTTTCAATAGT+TGG + Chr4:62915000-62915019 MsG0480021682.01.T01:intron 25.0%
!!! TAAACTGATTTGATCATGTT+TGG - Chr4:62914056-62914075 None:intergenic 25.0%
!!! TGTTTCTTCGAATTTTTAGA+TGG + Chr4:62916296-62916315 MsG0480021682.01.T01:intron 25.0%
!!! TTATATTTGTTTGCTTTTGG+AGG + Chr4:62915024-62915043 MsG0480021682.01.T01:intron 25.0%
!!! TTTACCTCTAGAATCAATTT+TGG + Chr4:62914072-62914091 MsG0480021682.01.T01:intron 25.0%
AAAGAAATACATTCAGAGAG+TGG - Chr4:62916727-62916746 None:intergenic 30.0%
AACTACCAATGCAAAAACAA+TGG + Chr4:62916407-62916426 MsG0480021682.01.T01:CDS 30.0%
AACTTCAACTTCCTAGTAAT+AGG + Chr4:62916668-62916687 MsG0480021682.01.T01:three_prime_UTR 30.0%
AATAAGGTGCATATAGAGTA+AGG - Chr4:62915750-62915769 None:intergenic 30.0%
AATCAAGCTTAGATCTTACT+TGG + Chr4:62916338-62916357 MsG0480021682.01.T01:CDS 30.0%
AATCCAATGTTTCAGAAGAA+TGG - Chr4:62915799-62915818 None:intergenic 30.0%
AATGTTTCAGAAGAATGGAT+GGG - Chr4:62915794-62915813 None:intergenic 30.0%
AATTGAGTGTATGTTTGGAT+TGG - Chr4:62915221-62915240 None:intergenic 30.0%
ACTACCAATGCAAAAACAAT+GGG + Chr4:62916408-62916427 MsG0480021682.01.T01:CDS 30.0%
AGATAACAATGGTGAAGAAT+TGG - Chr4:62913704-62913723 None:intergenic 30.0%
ATGTTTGAACTCAATTCAGT+TGG + Chr4:62914872-62914891 MsG0480021682.01.T01:intron 30.0%
ATTCTTCCAAATTATGCACA+TGG + Chr4:62916889-62916908 MsG0480021682.01.T01:three_prime_UTR 30.0%
CTTCATGTTTGTATTGTGTT+TGG + Chr4:62913855-62913874 MsG0480021682.01.T01:intron 30.0%
GAGGAAATGTAATGTTATGA+GGG - Chr4:62914621-62914640 None:intergenic 30.0%
GGTAATAAAAAAGAGGGAAA+AGG + Chr4:62916081-62916100 MsG0480021682.01.T01:intron 30.0%
TACTCTATATGCACCTTATT+TGG + Chr4:62915750-62915769 MsG0480021682.01.T01:intron 30.0%
TGAGGAAATGTAATGTTATG+AGG - Chr4:62914622-62914641 None:intergenic 30.0%
TGATAAAGCCAAACCAAATA+AGG - Chr4:62915766-62915785 None:intergenic 30.0%
TGTAAATGAAAAAGCCGAAA+GGG - Chr4:62915686-62915705 None:intergenic 30.0%
TGTTAATGAAAAGGAACTGA+AGG + Chr4:62915574-62915593 MsG0480021682.01.T01:intron 30.0%
TTCGTGAATATGAATTTCAC+TGG + Chr4:62914807-62914826 MsG0480021682.01.T01:intron 30.0%
TTCTCATTATGTTGTCATCT+AGG + Chr4:62916776-62916795 MsG0480021682.01.T01:three_prime_UTR 30.0%
! AGCTTTTACCTTCGATTTTT+TGG - Chr4:62915549-62915568 None:intergenic 30.0%
! CTTAGTTCTTAGTGAATGTT+TGG - Chr4:62914367-62914386 None:intergenic 30.0%
! GCTCTAAATATATTTGCTTC+AGG + Chr4:62916620-62916639 MsG0480021682.01.T01:exon 30.0%
! TAAGCCAAAATTGATTCTAG+AGG - Chr4:62914079-62914098 None:intergenic 30.0%
! TATATGCACCTTATTTGGTT+TGG + Chr4:62915755-62915774 MsG0480021682.01.T01:intron 30.0%
! TGAGCTAAAACTGATTTCAA+AGG - Chr4:62914331-62914350 None:intergenic 30.0%
! TTGATTCTGATTTTCTGCTT+TGG - Chr4:62916324-62916343 None:intergenic 30.0%
!! AGCAATGTTACGTTTTAGAT+TGG + Chr4:62914834-62914853 MsG0480021682.01.T01:intron 30.0%
!! TTCTTCTGAAACATTGGATT+TGG + Chr4:62915799-62915818 MsG0480021682.01.T01:intron 30.0%
!! TTTGGCTTTGAAGATAACAA+TGG - Chr4:62913715-62913734 None:intergenic 30.0%
!!! AGTTTTAGCTCATGTAAAAG+TGG + Chr4:62914339-62914358 MsG0480021682.01.T01:intron 30.0%
AAAGGGTAAGTGAAAGACTT+TGG - Chr4:62915669-62915688 None:intergenic 35.0%
AAGCACAAAGATTGAAGCTT+TGG - Chr4:62913733-62913752 None:intergenic 35.0%
AAGGGTAAGTGAAAGACTTT+GGG - Chr4:62915668-62915687 None:intergenic 35.0%
AAGTCTTTCACTTACCCTTT+CGG + Chr4:62915669-62915688 MsG0480021682.01.T01:intron 35.0%
ACAACAGTAGACAATTGAAG+AGG - Chr4:62913793-62913812 None:intergenic 35.0%
AGAGTCCACAGATAAGTTAT+AGG - Chr4:62916250-62916269 None:intergenic 35.0%
AGCACGTCAAAAATTAGCAT+TGG + Chr4:62914950-62914969 MsG0480021682.01.T01:CDS 35.0%
ATAGGAAATGAGTCGATACT+CGG + Chr4:62916686-62916705 MsG0480021682.01.T01:three_prime_UTR 35.0%
CAATGTTTCAGAAGAATGGA+TGG - Chr4:62915795-62915814 None:intergenic 35.0%
CACGTCAAAAATTAGCATTG+GGG + Chr4:62914952-62914971 MsG0480021682.01.T01:CDS 35.0%
CCTGAGGGTAATAAAAAAGA+GGG + Chr4:62916075-62916094 MsG0480021682.01.T01:intron 35.0%
GAATCTATTGTTTGTGCTGT+AGG - Chr4:62916555-62916574 None:intergenic 35.0%
GAGGGAATGTAATGTTATGA+GGG - Chr4:62914702-62914721 None:intergenic 35.0%
GAGGGAATTCAAATACTTTG+AGG - Chr4:62914603-62914622 None:intergenic 35.0%
GCAAATATCTATGTGACAAC+AGG - Chr4:62916819-62916838 None:intergenic 35.0%
GCACGTCAAAAATTAGCATT+GGG + Chr4:62914951-62914970 MsG0480021682.01.T01:CDS 35.0%
GCATAAAAGCGATGAATTTG+AGG + Chr4:62914168-62914187 MsG0480021682.01.T01:intron 35.0%
GGGAATGTAATGTAATGTTG+AGG - Chr4:62914640-62914659 None:intergenic 35.0%
GTGAATTCCATTGTTTGGAT+GGG - Chr4:62914662-62914681 None:intergenic 35.0%
GTGTAAATGAAAAAGCCGAA+AGG - Chr4:62915687-62915706 None:intergenic 35.0%
GTTTCAGAACAAGGTTACAT+TGG + Chr4:62915336-62915355 MsG0480021682.01.T01:intron 35.0%
TACATAGGTAATGAGTACCT+AGG + Chr4:62914430-62914449 MsG0480021682.01.T01:intron 35.0%
TAGTCATCATCCAATTTCCA+TGG + Chr4:62916157-62916176 MsG0480021682.01.T01:intron 35.0%
TATGGCATAGTTTCAGAACA+AGG + Chr4:62915327-62915346 MsG0480021682.01.T01:intron 35.0%
TCAAAAACCTGTGTTTGGAT+GGG - Chr4:62914735-62914754 None:intergenic 35.0%
TCCAAACACACTCTAAATTC+TGG - Chr4:62914533-62914552 None:intergenic 35.0%
TCCTGAGGGTAATAAAAAAG+AGG + Chr4:62916074-62916093 MsG0480021682.01.T01:intron 35.0%
TCGACTCATTTCCTATTACT+AGG - Chr4:62916682-62916701 None:intergenic 35.0%
TGAATTCCATTGTTTGGATG+GGG - Chr4:62914661-62914680 None:intergenic 35.0%
TGAGGGAATGTAATGTTATG+AGG - Chr4:62914703-62914722 None:intergenic 35.0%
TGTGACCTATAACTTATCTG+TGG + Chr4:62916242-62916261 MsG0480021682.01.T01:intron 35.0%
TGTGTTTGGATGAGGTAATT+TGG + Chr4:62914543-62914562 MsG0480021682.01.T01:intron 35.0%
TTGAGGTGAATTCCATTGTT+TGG - Chr4:62914667-62914686 None:intergenic 35.0%
! ACTATGCCATACTTTTGACA+AGG - Chr4:62915318-62915337 None:intergenic 35.0%
! ACTGCAATTTTGCCAAATCA+TGG + Chr4:62915167-62915186 MsG0480021682.01.T01:intron 35.0%
! ATGATTTGGCAAAATTGCAG+TGG - Chr4:62915168-62915187 None:intergenic 35.0%
! ATGCTAATTTTTGACGTGCT+TGG - Chr4:62914950-62914969 None:intergenic 35.0%
! ATTTAGAGTGTGTTTGGATG+AGG + Chr4:62914535-62914554 MsG0480021682.01.T01:intron 35.0%
! CTAGGAATTTTCTCAATGCT+TGG + Chr4:62914448-62914467 MsG0480021682.01.T01:intron 35.0%
! CTATGCCATACTTTTGACAA+GGG - Chr4:62915317-62915336 None:intergenic 35.0%
! CTTCAGAGAGTTTGTTTCAA+TGG + Chr4:62913630-62913649 MsG0480021682.01.T01:exon 35.0%
! TCCAGAATTTAGAGTGTGTT+TGG + Chr4:62914529-62914548 MsG0480021682.01.T01:intron 35.0%
! TTAGTGCATCTTTGGATTAG+CGG + Chr4:62915119-62915138 MsG0480021682.01.T01:intron 35.0%
!! AGCTGTTTTCATTCTTCTGA+GGG + Chr4:62915714-62915733 MsG0480021682.01.T01:intron 35.0%
!! CAAGCATTGAGAAAATTCCT+AGG - Chr4:62914450-62914469 None:intergenic 35.0%
!! CAATCTTTGTGCTTTGTTTC+TGG + Chr4:62913739-62913758 MsG0480021682.01.T01:CDS 35.0%
!! CATCCATTCTTCTGAAACAT+TGG + Chr4:62915793-62915812 MsG0480021682.01.T01:intron 35.0%
!! TAGCTGTTTTCATTCTTCTG+AGG + Chr4:62915713-62915732 MsG0480021682.01.T01:intron 35.0%
!! TTTTGGAGGCTTCTTATATG+TGG + Chr4:62915038-62915057 MsG0480021682.01.T01:intron 35.0%
!!! GTGTTTTTAGGTTGATGACT+TGG + Chr4:62914919-62914938 MsG0480021682.01.T01:intron 35.0%
AAAAACCTGTGTTTGGATGG+GGG - Chr4:62914733-62914752 None:intergenic 40.0%
AATCCAAATCCCTGAAACAC+AGG + Chr4:62916027-62916046 MsG0480021682.01.T01:intron 40.0%
ACCACTGGATAGAAATCAGA+CGG - Chr4:62915953-62915972 None:intergenic 40.0%
ACCTCAGAATTCAAAGCTTC+AGG - Chr4:62913826-62913845 None:intergenic 40.0%
AGGCTAAGAATCAATCGTAG+AGG + Chr4:62914188-62914207 MsG0480021682.01.T01:intron 40.0%
ATGCTCCCTTGTCAAAAGTA+TGG + Chr4:62915309-62915328 MsG0480021682.01.T01:intron 40.0%
ATGTTTCACTGCTGAGTAAC+TGG - Chr4:62915289-62915308 None:intergenic 40.0%
CAAAAACCTGTGTTTGGATG+GGG - Chr4:62914734-62914753 None:intergenic 40.0%
CCAATTTCCATGGAAAAGTG+AGG + Chr4:62916167-62916186 MsG0480021682.01.T01:intron 40.0%
CTCAAAAACCTGTGTTTGGA+TGG - Chr4:62914736-62914755 None:intergenic 40.0%
GAATTCCATTGTTTGGATGG+GGG - Chr4:62914660-62914679 None:intergenic 40.0%
GGTGAATTCCATTGTTTGGA+TGG - Chr4:62914663-62914682 None:intergenic 40.0%
TAAATCTCCACACGTACACA+AGG + Chr4:62916473-62916492 MsG0480021682.01.T01:CDS 40.0%
TGAGTTAGGCAAAATCACAC+TGG - Chr4:62915195-62915214 None:intergenic 40.0%
TGTGTACGTGTGGAGATTTA+AGG - Chr4:62916473-62916492 None:intergenic 40.0%
TTGCAGGAATCCTCTATCAA+GGG - Chr4:62916366-62916385 None:intergenic 40.0%
TTGGAAGAGACTGAAAGAGA+AGG - Chr4:62913685-62913704 None:intergenic 40.0%
! GATGAGTTCTGATCTCGAAA+TGG - Chr4:62916509-62916528 None:intergenic 40.0%
! TGAGTGTATGTTTGGATTGG+CGG - Chr4:62915218-62915237 None:intergenic 40.0%
!! ATTCGCTTCTTGGTTGGTAA+AGG - Chr4:62916441-62916460 None:intergenic 40.0%
!! CCAAACACAGGTTTTTGAGA+CGG + Chr4:62914737-62914756 MsG0480021682.01.T01:intron 40.0%
!! CCTCACTTTTCCATGGAAAT+TGG - Chr4:62916170-62916189 None:intergenic 40.0%
!! GGGACATTTTAGTGCATCTT+TGG + Chr4:62915111-62915130 MsG0480021682.01.T01:intron 40.0%
!! TCCTGAAGCTTTGAATTCTG+AGG + Chr4:62913822-62913841 MsG0480021682.01.T01:CDS 40.0%
!! TTCTACTCCTCACTTTTCCA+TGG - Chr4:62916177-62916196 None:intergenic 40.0%
!! TTCTTGGTTGGTAAAGGAAC+AGG - Chr4:62916435-62916454 None:intergenic 40.0%
!!! AGGACCCATTGTTTTTGCAT+TGG - Chr4:62916415-62916434 None:intergenic 40.0%
!!! AGGTTTTTGAGACGGTGTAA+AGG + Chr4:62914745-62914764 MsG0480021682.01.T01:intron 40.0%
!!! CCCTCTTTTTTATTACCCTC+AGG - Chr4:62916078-62916097 None:intergenic 40.0%
!!! GGTTTTTGAGACGGTGTAAA+GGG + Chr4:62914746-62914765 MsG0480021682.01.T01:intron 40.0%
!!! GTTTTTGAGACGGTGTAAAG+GGG + Chr4:62914747-62914766 MsG0480021682.01.T01:intron 40.0%
ACATTCCCCCATCCAAACAA+TGG + Chr4:62914652-62914671 MsG0480021682.01.T01:intron 45.0%
ACCGTCTGATTTCTATCCAG+TGG + Chr4:62915949-62915968 MsG0480021682.01.T01:intron 45.0%
ATCACACTATGTGGTTCCTG+AGG + Chr4:62916059-62916078 MsG0480021682.01.T01:intron 45.0%
ATCACACTGGCACCATGATT+TGG - Chr4:62915182-62915201 None:intergenic 45.0%
CAGTGAATTCGCTTCTTGGT+TGG - Chr4:62916447-62916466 None:intergenic 45.0%
CATTGGGGATAATGCAGACA+TGG + Chr4:62914967-62914986 MsG0480021682.01.T01:CDS 45.0%
CCACATAGTGTGATTGCACA+AGG - Chr4:62916053-62916072 None:intergenic 45.0%
CCGTCTCAAAAACCTGTGTT+TGG - Chr4:62914740-62914759 None:intergenic 45.0%
CCTTGTGCAATCACACTATG+TGG + Chr4:62916050-62916069 MsG0480021682.01.T01:intron 45.0%
CTTGCAGGAATCCTCTATCA+AGG - Chr4:62916367-62916386 None:intergenic 45.0%
GACACAGTGAATTCGCTTCT+TGG - Chr4:62916451-62916470 None:intergenic 45.0%
TCACACTATGTGGTTCCTGA+GGG + Chr4:62916060-62916079 MsG0480021682.01.T01:intron 45.0%
TGCAGGAATCCTCTATCAAG+GGG - Chr4:62916365-62916384 None:intergenic 45.0%
TTACTTGGTCCCCTTGATAG+AGG + Chr4:62916353-62916372 MsG0480021682.01.T01:CDS 45.0%
! AGTGTTGGATCGAGACTAGA+CGG + Chr4:62915866-62915885 MsG0480021682.01.T01:intron 45.0%
! TTGGATGGGGGAATGTTTTG+AGG - Chr4:62914721-62914740 None:intergenic 45.0%
!! TGGATGGGGGAATGTTTTGA+GGG - Chr4:62914720-62914739 None:intergenic 45.0%
ACATTCCCCCATCCAAACAC+AGG + Chr4:62914725-62914744 MsG0480021682.01.T01:intron 50.0%
AGGCCTGTGTTTCAGGGATT+TGG - Chr4:62916033-62916052 None:intergenic 50.0%
AGTCATGGTCTCATGGACGT+AGG - Chr4:62915978-62915997 None:intergenic 50.0%
ATGCAGCTTGATCTTCCTGC+TGG + Chr4:62916579-62916598 MsG0480021682.01.T01:CDS 50.0%
CACACGTACACAAGGATGCT+CGG + Chr4:62916481-62916500 MsG0480021682.01.T01:CDS 50.0%
GGATTCCTGCAAGCAGATAC+TGG + Chr4:62916374-62916393 MsG0480021682.01.T01:CDS 50.0%
TCATGGACGTAGGTAACCAC+TGG - Chr4:62915968-62915987 None:intergenic 50.0%
TCCACACATTCACGCAGTCT+GGG + Chr4:62915834-62915853 MsG0480021682.01.T01:intron 50.0%
TGCACAAGGCCTGTGTTTCA+GGG - Chr4:62916039-62916058 None:intergenic 50.0%
TGCATCCAGTATCTGCTTGC+AGG - Chr4:62916382-62916401 None:intergenic 50.0%
TTCACGCAGTCATGGTCTCA+TGG - Chr4:62915985-62916004 None:intergenic 50.0%
TTCCACACATTCACGCAGTC+TGG + Chr4:62915833-62915852 MsG0480021682.01.T01:intron 50.0%
TTGCACAAGGCCTGTGTTTC+AGG - Chr4:62916040-62916059 None:intergenic 50.0%
TTTGGATTTGACGCTGTCCG+CGG - Chr4:62916015-62916034 None:intergenic 50.0%
! ATTCACGCAGTCTGGGATGT+CGG + Chr4:62915841-62915860 MsG0480021682.01.T01:intron 50.0%
!! GTTTGGATTGGCGGTGAGTT+AGG - Chr4:62915209-62915228 None:intergenic 50.0%
ACTTCGACATCAACGCCAGC+AGG - Chr4:62916597-62916616 None:intergenic 55.0%
CGAGCATCCTTGTGTACGTG+TGG - Chr4:62916483-62916502 None:intergenic 55.0%
GGTGCACATTCACGCAGTCA+TGG - Chr4:62915993-62916012 None:intergenic 55.0%
TCCCAGACTGCGTGAATGTG+TGG - Chr4:62915838-62915857 None:intergenic 55.0%
TTGGATTTGACGCTGTCCGC+GGG - Chr4:62916014-62916033 None:intergenic 55.0%
! TCTGGGATGTCGGTGAGTGT+TGG + Chr4:62915851-62915870 MsG0480021682.01.T01:intron 55.0%
ACTGCGTGAATGTGCACCCG+CGG + Chr4:62915995-62916014 MsG0480021682.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr4 gene 62913590 62916934 62913590 ID=MsG0480021682.01;Name=MsG0480021682.01
Chr4 mRNA 62913590 62916934 62913590 ID=MsG0480021682.01.T01;Parent=MsG0480021682.01;Name=MsG0480021682.01.T01;_AED=0.45;_eAED=0.45;_QI=59|1|1|1|1|1|3|308|188
Chr4 exon 62916315 62916934 62916315 ID=MsG0480021682.01.T01:exon:7260;Parent=MsG0480021682.01.T01
Chr4 exon 62914929 62914988 62914929 ID=MsG0480021682.01.T01:exon:7259;Parent=MsG0480021682.01.T01
Chr4 exon 62913590 62913843 62913590 ID=MsG0480021682.01.T01:exon:7258;Parent=MsG0480021682.01.T01
Chr4 five_prime_UTR 62913590 62913648 62913590 ID=MsG0480021682.01.T01:five_prime_utr;Parent=MsG0480021682.01.T01
Chr4 CDS 62913649 62913843 62913649 ID=MsG0480021682.01.T01:cds;Parent=MsG0480021682.01.T01
Chr4 CDS 62914929 62914988 62914929 ID=MsG0480021682.01.T01:cds;Parent=MsG0480021682.01.T01
Chr4 CDS 62916315 62916626 62916315 ID=MsG0480021682.01.T01:cds;Parent=MsG0480021682.01.T01
Chr4 three_prime_UTR 62916627 62916934 62916627 ID=MsG0480021682.01.T01:three_prime_utr;Parent=MsG0480021682.01.T01
Gene Sequence

>MsG0480021682.01.T01

ATGGCAGTTTCATCTCTCTCAGCAACATTCATTCCTTCTCTTTCAGTCTCTTCCAATTCTTCACCATTGTTATCTTCAAAGCCAAAGCTTCAATCTTTGTGCTTTGTTTCTGGTAACACGTTGAGAATTACAAATGCAAAACCTCTTCAATTGTCTACTGTTGTTCATGCTGCTCCTGAAGCTTTGAATTCTGAGGTTGATGACTTGGAGACTCCAAGCACGTCAAAAATTAGCATTGGGGATAATGCAGACATGATGGCACCAAAGCAGAAAATCAGAATCAAGCTTAGATCTTACTTGGTCCCCTTGATAGAGGATTCCTGCAAGCAGATACTGGATGCAGCAAGAACTACCAATGCAAAAACAATGGGTCCTGTTCCTTTACCAACCAAGAAGCGAATTCACTGTGTCCTTAAATCTCCACACGTACACAAGGATGCTCGGTTCCATTTCGAGATCAGAACTCATCAGCGTGTCATTGATATTCTGTTTCCTACAGCACAAACAATAGATTCTCTTATGCAGCTTGATCTTCCTGCTGGCGTTGATGTCGAAGTCAAGCTCTAA

Protein sequence

>MsG0480021682.01.T01

MAVSSLSATFIPSLSVSSNSSPLLSSKPKLQSLCFVSGNTLRITNAKPLQLSTVVHAAPEALNSEVDDLETPSTSKISIGDNADMMAPKQKIRIKLRSYLVPLIEDSCKQILDAARTTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRVIDILFPTAQTIDSLMQLDLPAGVDVEVKL*