AlfalfaGEDB | MsG0280010943.01

M. sativa cultivar ZhongmuNo.1 / MsG0280010943.01

KEGG: K13525
GO: -
PFAM: PF02359

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010943.01.T01	XP_004487074.1	95.312	64	3	0	1	64	1	64	2.35E-31	125

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010943.01.T01	P54774	90.323	62	6	0	3	64	4	65	1.33E-29	112

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010943.01.T01	A0A1S2XEL7	95.312	64	3	0	1	64	1	64	1.12e-31	125

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048178.01	MsG0280010943.01	0.808032	3.779572e-50	2.138060e-47
MsG0080048982.01	MsG0280010943.01	0.818095	2.343784e-52	1.737776e-49
MsG0180000271.01	MsG0280010943.01	0.810102	1.361887e-50	8.137558e-48
MsG0180000320.01	MsG0280010943.01	0.838265	3.186627e-57	4.245295e-54
MsG0180000856.01	MsG0280010943.01	0.814112	1.818097e-51	1.209182e-48
MsG0180001312.01	MsG0280010943.01	0.830399	3.002419e-55	3.159590e-52
MsG0180001922.01	MsG0280010943.01	0.835601	1.525902e-56	1.875043e-53
MsG0180002071.01	MsG0280010943.01	0.802502	5.443463e-49	2.670733e-46
MsG0180003088.01	MsG0280010943.01	0.847757	9.449889e-60	1.696730e-56
MsG0180004462.01	MsG0280010943.01	0.803164	3.972410e-49	1.982254e-46

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010943.01.T01	MTR_0041s0130	85.714	63	8	1	3	64	4	66	7.13e-32	107
MsG0280010943.01.T01	MTR_1g063380	88.710	62	7	0	3	64	4	65	1.16e-30	112
MsG0280010943.01.T01	MTR_2g095210	86.567	67	6	2	1	64	1	67	1.97e-30	111
MsG0280010943.01.T01	MTR_7g101870	85.714	63	8	1	3	64	4	66	4.59e-29	107
MsG0280010943.01.T01	MTR_6g025300	52.381	63	29	1	3	64	5	67	2.51e-14	65.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0280010943.01.T01	AT5G03340	85.484	62	8	1	3	64	4	64	2.61e-28	105
MsG0280010943.01.T01	AT3G09840	84.615	65	8	2	1	64	1	64	1.53e-27	103
MsG0280010943.01.T01	AT3G53230	80.645	62	12	0	3	64	4	65	5.70e-27	102

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Find 30 sgRNAs with CRISPR-Local

Find 35 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATTAATTTAAAGA+GGG	0.517648	2:+77399958	None:intergenic
AAACCGCCTTGTGGTGGATG+AGG	0.495300	2:-77400087	MsG0280010943.01.T01:CDS
AATGGCTCAACCTGAATCAT+CGG	0.555601	2:-77400280	MsG0280010943.01.T01:CDS
ACTTACGAGTCCGATGATTC+AGG	0.364075	2:+77400270	None:intergenic
ATCGCCAAACCGCCTTGTGG+TGG	0.554958	2:-77400093	MsG0280010943.01.T01:CDS
CCGCCTCATCCACCACAAGG+CGG	0.743300	2:+77400084	None:intergenic
CCGCCTTGTGGTGGATGAGG+CGG	0.565834	2:-77400084	MsG0280010943.01.T01:CDS
CTCTGAAACCATGGAAAAGT+TGG	0.382341	2:-77400030	MsG0280010943.01.T01:CDS
CTGAAACCATGGAAAAGTTG+GGG	0.594559	2:-77400028	MsG0280010943.01.T01:CDS
CTTACGTTCCAGAATCGCAG+TGG	0.649836	2:+77400118	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GTTTGAATTTCAGGAAATCA+GGG	-	Chr2:77400216-77400235	MsG0280010943.01.T01:intron	30.0%
TAGAGTAGTGAATAAAGACA+GGG	+	Chr2:77400003-77400022	None:intergenic	30.0%
TTGTCGATGGAATTTGAAAA+TGG	+	Chr2:77400072-77400091	None:intergenic	30.0%
GGTTTGAATTTCAGGAAATC+AGG	-	Chr2:77400215-77400234	MsG0280010943.01.T01:intron	35.0%
GTAGAGTAGTGAATAAAGAC+AGG	+	Chr2:77400004-77400023	None:intergenic	35.0%
TCATCACACAAACAAAGTCA+AGG	-	Chr2:77400035-77400054	MsG0280010943.01.T01:CDS	35.0%
TTTGAATGGAAAATCGAACG+CGG	+	Chr2:77400138-77400157	None:intergenic	35.0%
AATGGCTCAACCTGAATCAT+CGG	-	Chr2:77400090-77400109	MsG0280010943.01.T01:CDS	40.0%
CTGAAACCATGGAAAAGTTG+GGG	-	Chr2:77400342-77400361	MsG0280010943.01.T01:five_prime_UTR	40.0%
TCCAAAACAGTACCTTGATG+AGG	+	Chr2:77400388-77400407	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr2	gene	77399971	77400421	77399971	ID=MsG0280010943.01;Name=MsG0280010943.01
Chr2	mRNA	77399971	77400421	77399971	ID=MsG0280010943.01.T01;Parent=MsG0280010943.01;Name=MsG0280010943.01.T01;_AED=0.49;_eAED=0.53;_QI=120\|1\|0.5\|1\|0\|0.5\|2\|0\|72
Chr2	exon	77399971	77400163	77399971	ID=MsG0280010943.01.T01:exon:11465;Parent=MsG0280010943.01.T01
Chr2	exon	77400276	77400421	77400276	ID=MsG0280010943.01.T01:exon:11464;Parent=MsG0280010943.01.T01
Chr2	five_prime_UTR	77400302	77400421	77400302	ID=MsG0280010943.01.T01:five_prime_utr;Parent=MsG0280010943.01.T01
Chr2	CDS	77400276	77400301	77400276	ID=MsG0280010943.01.T01:cds;Parent=MsG0280010943.01.T01
Chr2	CDS	77399971	77400163	77399971	ID=MsG0280010943.01.T01:cds;Parent=MsG0280010943.01.T01

Gene Sequence	>MsG0280010943.01.T01 ATGGCTCAACCTGAATCATCGGACTCGAAATCAGGGAAGAAGGATTTCTCCACTGCGATTCTGGAACGTAAGAAATCGCCAAACCGCCTTGTGGTGGATGAGGCGGTTAACGATGACAACTCTGTTGTTGCCATGCACTCTGAAACCATGGAAAAGTTGGGGCTTTTCCGTGGTGATACTATCCTCATCAAGGTACTGTTTTGGATATACCCTCTTTAA
Protein sequence	>MsG0280010943.01.T01 MAQPESSDSKSGKKDFSTAILERKKSPNRLVVDEAVNDDNSVVAMHSETMEKLGLFRGDTILIKVLFWIYPL*