Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010943.01.T01 | XP_004487074.1 | 95.312 | 64 | 3 | 0 | 1 | 64 | 1 | 64 | 2.35E-31 | 125 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010943.01.T01 | P54774 | 90.323 | 62 | 6 | 0 | 3 | 64 | 4 | 65 | 1.33E-29 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010943.01.T01 | A0A1S2XEL7 | 95.312 | 64 | 3 | 0 | 1 | 64 | 1 | 64 | 1.12e-31 | 125 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048178.01 | MsG0280010943.01 | 0.808032 | 3.779572e-50 | 2.138060e-47 |
| MsG0080048982.01 | MsG0280010943.01 | 0.818095 | 2.343784e-52 | 1.737776e-49 |
| MsG0180000271.01 | MsG0280010943.01 | 0.810102 | 1.361887e-50 | 8.137558e-48 |
| MsG0180000320.01 | MsG0280010943.01 | 0.838265 | 3.186627e-57 | 4.245295e-54 |
| MsG0180000856.01 | MsG0280010943.01 | 0.814112 | 1.818097e-51 | 1.209182e-48 |
| MsG0180001312.01 | MsG0280010943.01 | 0.830399 | 3.002419e-55 | 3.159590e-52 |
| MsG0180001922.01 | MsG0280010943.01 | 0.835601 | 1.525902e-56 | 1.875043e-53 |
| MsG0180002071.01 | MsG0280010943.01 | 0.802502 | 5.443463e-49 | 2.670733e-46 |
| MsG0180003088.01 | MsG0280010943.01 | 0.847757 | 9.449889e-60 | 1.696730e-56 |
| MsG0180004462.01 | MsG0280010943.01 | 0.803164 | 3.972410e-49 | 1.982254e-46 |
| MsG0180004986.01 | MsG0280010943.01 | 0.834893 | 2.302629e-56 | 2.769965e-53 |
| MsG0180006023.01 | MsG0280010943.01 | 0.807639 | 4.582826e-50 | 2.565847e-47 |
| MsG0280006356.01 | MsG0280010943.01 | 0.817417 | 3.332943e-52 | 2.425928e-49 |
| MsG0280010943.01 | MsG0280011032.01 | 0.815034 | 1.136526e-51 | 7.749757e-49 |
| MsG0280010943.01 | MsG0280011131.01 | 0.844880 | 5.747204e-59 | 9.407916e-56 |
| MsG0280010943.01 | MsG0280011191.01 | 0.812521 | 4.066006e-51 | 2.590998e-48 |
| MsG0280010943.01 | MsG0380012458.01 | 0.804015 | 2.645135e-49 | 1.349156e-46 |
| MsG0280010943.01 | MsG0380012566.01 | 0.803867 | 2.839429e-49 | 1.442808e-46 |
| MsG0280010943.01 | MsG0380014561.01 | 0.810448 | 1.147013e-50 | 6.915670e-48 |
| MsG0280010943.01 | MsG0380014573.01 | 0.821297 | 4.352211e-53 | 3.526804e-50 |
| MsG0280010943.01 | MsG0380015400.01 | 0.817973 | 2.498105e-52 | 1.846022e-49 |
| MsG0280010943.01 | MsG0380015404.01 | 0.830408 | 2.986854e-55 | 3.144160e-52 |
| MsG0280010943.01 | MsG0380015770.01 | 0.893722 | 4.824230e-75 | 4.652308e-71 |
| MsG0280010943.01 | MsG0380015771.01 | 0.878445 | 2.791714e-69 | 1.458195e-65 |
| MsG0280010943.01 | MsG0380015931.01 | 0.821651 | 3.604435e-53 | 2.950004e-50 |
| MsG0280010943.01 | MsG0380016004.01 | 0.812724 | 3.670765e-51 | 2.351660e-48 |
| MsG0280010943.01 | MsG0380016342.01 | -0.842950 | 1.890734e-58 | 2.912676e-55 |
| MsG0280010943.01 | MsG0380016624.01 | 0.802259 | 6.107862e-49 | 2.978306e-46 |
| MsG0280010943.01 | MsG0380017178.01 | -0.807213 | 5.640188e-50 | 3.123225e-47 |
| MsG0280010943.01 | MsG0380017226.01 | 0.822347 | 2.486872e-53 | 2.076206e-50 |
| MsG0280010943.01 | MsG0380017286.01 | 0.821618 | 3.668248e-53 | 2.999349e-50 |
| MsG0280010943.01 | MsG0480018321.01 | 0.816830 | 4.517551e-52 | 3.235530e-49 |
| MsG0280010943.01 | MsG0480018332.01 | 0.827212 | 1.772127e-54 | 1.699633e-51 |
| MsG0280010943.01 | MsG0480019373.01 | 0.813900 | 2.025009e-51 | 1.339109e-48 |
| MsG0280010943.01 | MsG0480019434.01 | 0.828138 | 1.061666e-54 | 1.046115e-51 |
| MsG0280010943.01 | MsG0480019871.01 | 0.800804 | 1.213810e-48 | 5.704412e-46 |
| MsG0280010943.01 | MsG0480020445.01 | 0.838296 | 3.127773e-57 | 4.170836e-54 |
| MsG0280010943.01 | MsG0480020839.01 | 0.832391 | 9.710334e-56 | 1.083848e-52 |
| MsG0280010943.01 | MsG0480021034.01 | 0.805298 | 1.428396e-49 | 7.529746e-47 |
| MsG0280010943.01 | MsG0480021134.01 | 0.850424 | 1.712957e-60 | 3.354086e-57 |
| MsG0280010943.01 | MsG0480022479.01 | 0.801453 | 8.940517e-49 | 4.271303e-46 |
| MsG0280010943.01 | MsG0480022752.01 | 0.825571 | 4.358701e-54 | 3.987926e-51 |
| MsG0280010943.01 | MsG0480022827.01 | 0.809899 | 1.506222e-50 | 8.951981e-48 |
| MsG0280010943.01 | MsG0480023174.01 | 0.822818 | 1.932984e-53 | 1.635515e-50 |
| MsG0280010943.01 | MsG0480023654.01 | 0.814803 | 1.279252e-51 | 8.668534e-49 |
| MsG0280010943.01 | MsG0580024274.01 | 0.802271 | 6.073406e-49 | 2.962429e-46 |
| MsG0280010943.01 | MsG0580024581.01 | 0.806583 | 7.667202e-50 | 4.176897e-47 |
| MsG0280010943.01 | MsG0580024946.01 | 0.807058 | 6.084564e-50 | 3.355662e-47 |
| MsG0280010943.01 | MsG0580025758.01 | 0.802746 | 4.847003e-49 | 2.393044e-46 |
| MsG0280010943.01 | MsG0580025907.01 | 0.830153 | 3.447209e-55 | 3.602226e-52 |
| MsG0280010943.01 | MsG0580026047.01 | 0.803475 | 3.425751e-49 | 1.723130e-46 |
| MsG0280010943.01 | MsG0580027034.01 | 0.808440 | 3.094703e-50 | 1.769623e-47 |
| MsG0280010943.01 | MsG0580027129.01 | 0.811629 | 6.361322e-51 | 3.957438e-48 |
| MsG0280010943.01 | MsG0580027228.01 | 0.818595 | 1.806259e-52 | 1.357857e-49 |
| MsG0280010943.01 | MsG0580027344.01 | 0.816081 | 6.646547e-52 | 4.664076e-49 |
| MsG0280010943.01 | MsG0580027773.01 | 0.820030 | 8.507930e-53 | 6.656636e-50 |
| MsG0280010943.01 | MsG0580028185.01 | 0.806619 | 7.533705e-50 | 4.107875e-47 |
| MsG0280010943.01 | MsG0680030351.01 | 0.817502 | 3.190214e-52 | 2.327398e-49 |
| MsG0280010943.01 | MsG0680030841.01 | 0.805980 | 1.027098e-49 | 5.510304e-47 |
| MsG0280010943.01 | MsG0680031334.01 | 0.813854 | 2.073565e-51 | 1.369421e-48 |
| MsG0280010943.01 | MsG0680031712.01 | 0.816461 | 5.463533e-52 | 3.873629e-49 |
| MsG0280010943.01 | MsG0680032641.01 | 0.811680 | 6.203364e-51 | 3.864189e-48 |
| MsG0280010943.01 | MsG0680034067.01 | 0.807289 | 5.436026e-50 | 3.016129e-47 |
| MsG0280010943.01 | MsG0680034190.01 | 0.811444 | 6.981626e-51 | 4.322505e-48 |
| MsG0280010943.01 | MsG0680034450.01 | 0.811784 | 5.888267e-51 | 3.678249e-48 |
| MsG0280010943.01 | MsG0680035737.01 | 0.815379 | 9.528688e-52 | 6.558946e-49 |
| MsG0280010943.01 | MsG0780036705.01 | 0.806723 | 7.160551e-50 | 3.915051e-47 |
| MsG0280010943.01 | MsG0780038135.01 | 0.813864 | 2.062624e-51 | 1.362625e-48 |
| MsG0280010943.01 | MsG0780038231.01 | 0.846104 | 2.677700e-59 | 4.559119e-56 |
| MsG0280010943.01 | MsG0780038444.01 | 0.853504 | 2.287553e-61 | 4.954036e-58 |
| MsG0280010943.01 | MsG0780038911.01 | 0.812954 | 3.269404e-51 | 2.107067e-48 |
| MsG0280010943.01 | MsG0780039452.01 | 0.835079 | 2.066997e-56 | 2.500359e-53 |
| MsG0280010943.01 | MsG0780040442.01 | 0.800875 | 1.173872e-48 | 5.527040e-46 |
| MsG0280010943.01 | MsG0780040445.01 | 0.834904 | 2.288921e-56 | 2.754395e-53 |
| MsG0280010943.01 | MsG0780040679.01 | 0.809297 | 2.028365e-50 | 1.186479e-47 |
| MsG0280010943.01 | MsG0780040742.01 | 0.801332 | 9.465175e-49 | 4.508176e-46 |
| MsG0280010943.01 | MsG0780040929.01 | 0.809214 | 2.113105e-50 | 1.233323e-47 |
| MsG0280010943.01 | MsG0780041294.01 | 0.818057 | 2.390810e-52 | 1.770863e-49 |
| MsG0280010943.01 | MsG0880041830.01 | -0.801245 | 9.862761e-49 | 4.687326e-46 |
| MsG0280010943.01 | MsG0880042055.01 | 0.801719 | 7.885643e-49 | 3.792650e-46 |
| MsG0280010943.01 | MsG0880042065.01 | 0.807786 | 4.264080e-50 | 2.396622e-47 |
| MsG0280010943.01 | MsG0880042314.01 | 0.825120 | 5.572766e-54 | 5.033955e-51 |
| MsG0280010943.01 | MsG0880042404.01 | 0.837939 | 3.866491e-57 | 5.100716e-54 |
| MsG0280010943.01 | MsG0880042811.01 | 0.815485 | 9.023087e-52 | 6.229517e-49 |
| MsG0280010943.01 | MsG0880043144.01 | 0.827942 | 1.184082e-54 | 1.160025e-51 |
| MsG0280010943.01 | MsG0880043591.01 | 0.819240 | 1.288569e-52 | 9.861472e-50 |
| MsG0280010943.01 | MsG0880043867.01 | 0.819286 | 1.258156e-52 | 9.640370e-50 |
| MsG0280010943.01 | MsG0880044079.01 | 0.806750 | 7.067204e-50 | 3.866679e-47 |
| MsG0280010943.01 | MsG0880044546.01 | 0.818945 | 1.503619e-52 | 1.141534e-49 |
| MsG0280010943.01 | MsG0880044573.01 | 0.809129 | 2.204435e-50 | 1.283693e-47 |
| MsG0280010943.01 | MsG0880045133.01 | 0.809737 | 1.632414e-50 | 9.661143e-48 |
| MsG0280010943.01 | MsG0880045290.01 | 0.805179 | 1.512313e-49 | 7.947901e-47 |
| MsG0280010943.01 | MsG0880046058.01 | 0.800148 | 1.650982e-48 | 7.630928e-46 |
| MsG0280010943.01 | MsG0880046088.01 | 0.814974 | 1.172146e-51 | 7.979534e-49 |
| MsG0280010943.01 | MsG0880046209.01 | 0.832936 | 7.111625e-56 | 8.067841e-53 |
| MsG0280010943.01 | MsG0880047019.01 | 0.835780 | 1.374805e-56 | 1.698490e-53 |
| MsG0280010943.01 | MsG0880047497.01 | 0.812600 | 3.907507e-51 | 2.495053e-48 |
| MsG0280010943.01 | MsG0880047608.01 | 0.838682 | 2.486864e-57 | 3.355854e-54 |
| MsG0280006473.01 | MsG0280010943.01 | 0.807381 | 5.197453e-50 | 2.890645e-47 |
| MsG0280007272.01 | MsG0280010943.01 | 0.832145 | 1.117112e-55 | 1.237750e-52 |
| MsG0280007610.01 | MsG0280010943.01 | 0.802209 | 6.252191e-49 | 3.044768e-46 |
| MsG0280007714.01 | MsG0280010943.01 | 0.832365 | 9.853803e-56 | 1.098973e-52 |
| MsG0280007848.01 | MsG0280010943.01 | 0.802433 | 5.623696e-49 | 2.754495e-46 |
| MsG0280007948.01 | MsG0280010943.01 | 0.813851 | 2.076121e-51 | 1.371046e-48 |
| MsG0280009024.01 | MsG0280010943.01 | 0.812692 | 3.729955e-51 | 2.387577e-48 |
| MsG0280009637.01 | MsG0280010943.01 | -0.802571 | 5.265679e-49 | 2.588098e-46 |
| MsG0280009739.01 | MsG0280010943.01 | 0.851640 | 7.780610e-61 | 1.585084e-57 |
| MsG0280010287.01 | MsG0280010943.01 | 0.802990 | 4.315196e-49 | 2.143636e-46 |
| MsG0280010416.01 | MsG0280010943.01 | 0.828017 | 1.135683e-54 | 1.115143e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010943.01.T01 | MTR_0041s0130 | 85.714 | 63 | 8 | 1 | 3 | 64 | 4 | 66 | 7.13e-32 | 107 |
| MsG0280010943.01.T01 | MTR_1g063380 | 88.710 | 62 | 7 | 0 | 3 | 64 | 4 | 65 | 1.16e-30 | 112 |
| MsG0280010943.01.T01 | MTR_2g095210 | 86.567 | 67 | 6 | 2 | 1 | 64 | 1 | 67 | 1.97e-30 | 111 |
| MsG0280010943.01.T01 | MTR_7g101870 | 85.714 | 63 | 8 | 1 | 3 | 64 | 4 | 66 | 4.59e-29 | 107 |
| MsG0280010943.01.T01 | MTR_6g025300 | 52.381 | 63 | 29 | 1 | 3 | 64 | 5 | 67 | 2.51e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0280010943.01.T01 | AT5G03340 | 85.484 | 62 | 8 | 1 | 3 | 64 | 4 | 64 | 2.61e-28 | 105 |
| MsG0280010943.01.T01 | AT3G09840 | 84.615 | 65 | 8 | 2 | 1 | 64 | 1 | 64 | 1.53e-27 | 103 |
| MsG0280010943.01.T01 | AT3G53230 | 80.645 | 62 | 12 | 0 | 3 | 64 | 4 | 65 | 5.70e-27 | 102 |
Find 30 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGATTTCTCCACTGCGATTC+TGG | 0.202960 | 2:-77400126 | MsG0280010943.01.T01:CDS |
| TTGTCGATGGAATTTGAAAA+TGG | 0.308232 | 2:+77400301 | None:intergenic |
| GGTTTGAATTTCAGGAAATC+AGG | 0.325143 | 2:-77400155 | MsG0280010943.01.T01:intron |
| TCCTCATCAAGGTACTGTTT+TGG | 0.346624 | 2:-77399986 | MsG0280010943.01.T01:CDS |
| ACTTACGAGTCCGATGATTC+AGG | 0.364075 | 2:+77400270 | None:intergenic |
| GAAAAGTGATTAATTTAAAG+AGG | 0.378693 | 2:+77399957 | None:intergenic |
| CTCTGAAACCATGGAAAAGT+TGG | 0.382341 | 2:-77400030 | MsG0280010943.01.T01:CDS |
| TCTGAAACCATGGAAAAGTT+GGG | 0.427446 | 2:-77400029 | MsG0280010943.01.T01:CDS |
| TCATCCACCACAAGGCGGTT+TGG | 0.459564 | 2:+77400089 | None:intergenic |
| TTTCAGGAAATCAGGGAAGA+AGG | 0.463432 | 2:-77400147 | MsG0280010943.01.T01:intron |
| GTAGAGTAGTGAATAAAGAC+AGG | 0.492037 | 2:+77400369 | None:intergenic |
| AAACCGCCTTGTGGTGGATG+AGG | 0.495300 | 2:-77400087 | MsG0280010943.01.T01:CDS |
| TTCCATGGTTTCAGAGTGCA+TGG | 0.496237 | 2:+77400037 | None:intergenic |
| TGCCATGCACTCTGAAACCA+TGG | 0.505814 | 2:-77400039 | MsG0280010943.01.T01:CDS |
| AAAAGTGATTAATTTAAAGA+GGG | 0.517648 | 2:+77399958 | None:intergenic |
| TCAGGTTGAGCCATTGTCGA+TGG | 0.539590 | 2:+77400288 | None:intergenic |
| ATCGCCAAACCGCCTTGTGG+TGG | 0.554958 | 2:-77400093 | MsG0280010943.01.T01:CDS |
| AATGGCTCAACCTGAATCAT+CGG | 0.555601 | 2:-77400280 | MsG0280010943.01.T01:CDS |
| GTTTGAATTTCAGGAAATCA+GGG | 0.561660 | 2:-77400154 | MsG0280010943.01.T01:intron |
| CCGCCTTGTGGTGGATGAGG+CGG | 0.565834 | 2:-77400084 | MsG0280010943.01.T01:CDS |
| TCATCACACAAACAAAGTCA+AGG | 0.576116 | 2:-77400335 | MsG0280010943.01.T01:five_prime_UTR |
| CTGAAACCATGGAAAAGTTG+GGG | 0.594559 | 2:-77400028 | MsG0280010943.01.T01:CDS |
| TGGTGATACTATCCTCATCA+AGG | 0.601146 | 2:-77399997 | MsG0280010943.01.T01:CDS |
| TCCAAAACAGTACCTTGATG+AGG | 0.648639 | 2:+77399985 | None:intergenic |
| CTTACGTTCCAGAATCGCAG+TGG | 0.649836 | 2:+77400118 | None:intergenic |
| GAAATCGCCAAACCGCCTTG+TGG | 0.658822 | 2:-77400096 | MsG0280010943.01.T01:CDS |
| TAACCGCCTCATCCACCACA+AGG | 0.671534 | 2:+77400081 | None:intergenic |
| TAGAGTAGTGAATAAAGACA+GGG | 0.689607 | 2:+77400370 | None:intergenic |
| CCGCCTCATCCACCACAAGG+CGG | 0.743300 | 2:+77400084 | None:intergenic |
| TGATGAGGATAGTATCACCA+CGG | 0.747718 | 2:+77400000 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATGATATTGAAGTTTGT+TGG | - | Chr2:77400194-77400213 | MsG0280010943.01.T01:intron | 20.0% |
| ! | CGAAAATCGAAAAATTTGAA+TGG | + | Chr2:77400152-77400171 | None:intergenic | 25.0% |
| GTTTGAATTTCAGGAAATCA+GGG | - | Chr2:77400216-77400235 | MsG0280010943.01.T01:intron | 30.0% | |
| TAGAGTAGTGAATAAAGACA+GGG | + | Chr2:77400003-77400022 | None:intergenic | 30.0% | |
| TTGTCGATGGAATTTGAAAA+TGG | + | Chr2:77400072-77400091 | None:intergenic | 30.0% | |
| ! | TTTTCAAATTCCATCGACAA+TGG | - | Chr2:77400072-77400091 | MsG0280010943.01.T01:CDS | 30.0% |
| !! | AGTTTGTTGGTTTGAATTTC+AGG | - | Chr2:77400207-77400226 | MsG0280010943.01.T01:intron | 30.0% |
| GGTTTGAATTTCAGGAAATC+AGG | - | Chr2:77400215-77400234 | MsG0280010943.01.T01:intron | 35.0% | |
| GTAGAGTAGTGAATAAAGAC+AGG | + | Chr2:77400004-77400023 | None:intergenic | 35.0% | |
| TCATCACACAAACAAAGTCA+AGG | - | Chr2:77400035-77400054 | MsG0280010943.01.T01:CDS | 35.0% | |
| TTTGAATGGAAAATCGAACG+CGG | + | Chr2:77400138-77400157 | None:intergenic | 35.0% | |
| ! | TCTGAAACCATGGAAAAGTT+GGG | - | Chr2:77400341-77400360 | MsG0280010943.01.T01:five_prime_UTR | 35.0% |
| AATGGCTCAACCTGAATCAT+CGG | - | Chr2:77400090-77400109 | MsG0280010943.01.T01:CDS | 40.0% | |
| CTGAAACCATGGAAAAGTTG+GGG | - | Chr2:77400342-77400361 | MsG0280010943.01.T01:five_prime_UTR | 40.0% | |
| TCCAAAACAGTACCTTGATG+AGG | + | Chr2:77400388-77400407 | None:intergenic | 40.0% | |
| TGATGAGGATAGTATCACCA+CGG | + | Chr2:77400373-77400392 | None:intergenic | 40.0% | |
| TGGTGATACTATCCTCATCA+AGG | - | Chr2:77400373-77400392 | MsG0280010943.01.T01:five_prime_UTR | 40.0% | |
| TTTCAGGAAATCAGGGAAGA+AGG | - | Chr2:77400223-77400242 | MsG0280010943.01.T01:intron | 40.0% | |
| !! | CTCTGAAACCATGGAAAAGT+TGG | - | Chr2:77400340-77400359 | MsG0280010943.01.T01:five_prime_UTR | 40.0% |
| !!! | TCCTCATCAAGGTACTGTTT+TGG | - | Chr2:77400384-77400403 | MsG0280010943.01.T01:five_prime_UTR | 40.0% |
| ACTTACGAGTCCGATGATTC+AGG | + | Chr2:77400103-77400122 | None:intergenic | 45.0% | |
| TTCCATGGTTTCAGAGTGCA+TGG | + | Chr2:77400336-77400355 | None:intergenic | 45.0% | |
| ! | GAAAAGCCCCAACTTTTCCA+TGG | + | Chr2:77400351-77400370 | None:intergenic | 45.0% |
| CTTACGTTCCAGAATCGCAG+TGG | + | Chr2:77400255-77400274 | None:intergenic | 50.0% | |
| GGATTTCTCCACTGCGATTC+TGG | - | Chr2:77400244-77400263 | MsG0280010943.01.T01:intron | 50.0% | |
| ! | GAAAAGTTGGGGCTTTTCCG+TGG | - | Chr2:77400353-77400372 | MsG0280010943.01.T01:five_prime_UTR | 50.0% |
| !! | TCAGGTTGAGCCATTGTCGA+TGG | + | Chr2:77400085-77400104 | None:intergenic | 50.0% |
| !! | TGCCATGCACTCTGAAACCA+TGG | - | Chr2:77400331-77400350 | MsG0280010943.01.T01:five_prime_UTR | 50.0% |
| GAAATCGCCAAACCGCCTTG+TGG | - | Chr2:77400274-77400293 | MsG0280010943.01.T01:intron | 55.0% | |
| TAACCGCCTCATCCACCACA+AGG | + | Chr2:77400292-77400311 | None:intergenic | 55.0% | |
| TCATCCACCACAAGGCGGTT+TGG | + | Chr2:77400284-77400303 | None:intergenic | 55.0% | |
| !! | AAACCGCCTTGTGGTGGATG+AGG | - | Chr2:77400283-77400302 | MsG0280010943.01.T01:exon | 55.0% |
| ATCGCCAAACCGCCTTGTGG+TGG | - | Chr2:77400277-77400296 | MsG0280010943.01.T01:CDS | 60.0% | |
| CCGCCTCATCCACCACAAGG+CGG | + | Chr2:77400289-77400308 | None:intergenic | 65.0% | |
| !! | CCGCCTTGTGGTGGATGAGG+CGG | - | Chr2:77400286-77400305 | MsG0280010943.01.T01:exon | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr2 | gene | 77399971 | 77400421 | 77399971 | ID=MsG0280010943.01;Name=MsG0280010943.01 |
| Chr2 | mRNA | 77399971 | 77400421 | 77399971 | ID=MsG0280010943.01.T01;Parent=MsG0280010943.01;Name=MsG0280010943.01.T01;_AED=0.49;_eAED=0.53;_QI=120|1|0.5|1|0|0.5|2|0|72 |
| Chr2 | exon | 77399971 | 77400163 | 77399971 | ID=MsG0280010943.01.T01:exon:11465;Parent=MsG0280010943.01.T01 |
| Chr2 | exon | 77400276 | 77400421 | 77400276 | ID=MsG0280010943.01.T01:exon:11464;Parent=MsG0280010943.01.T01 |
| Chr2 | five_prime_UTR | 77400302 | 77400421 | 77400302 | ID=MsG0280010943.01.T01:five_prime_utr;Parent=MsG0280010943.01.T01 |
| Chr2 | CDS | 77400276 | 77400301 | 77400276 | ID=MsG0280010943.01.T01:cds;Parent=MsG0280010943.01.T01 |
| Chr2 | CDS | 77399971 | 77400163 | 77399971 | ID=MsG0280010943.01.T01:cds;Parent=MsG0280010943.01.T01 |
| Gene Sequence |
| Protein sequence |
