AlfalfaGEDB | MsG0880046390.01

M. sativa cultivar ZhongmuNo.1 / MsG0880046390.01

KEGG: K15436
GO: GO:0005488
PFAM: PF08389

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046390.01.T01	XP_013457848.1	89.152	1014	9	3	1	967	1	960	0	1811

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046390.01.T01	Q8GUL2	65.381	1011	245	5	1	964	1	953	0	1312

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046390.01.T01	A0A072UQ05	89.152	1014	9	3	1	967	1	960	0.0	1811

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048694.01	MsG0880046390.01	-0.808207	3.468563e-50	1.971337e-47
MsG0080048695.01	MsG0880046390.01	-0.808569	2.903455e-50	1.665795e-47
MsG0080049066.01	MsG0880046390.01	-0.826911	2.092351e-54	1.989193e-51
MsG0080049133.01	MsG0880046390.01	-0.810233	1.275938e-50	7.649715e-48
MsG0180000467.01	MsG0880046390.01	-0.826787	2.240028e-54	2.121711e-51
MsG0180000583.01	MsG0880046390.01	0.821210	4.558269e-53	3.685117e-50
MsG0180001054.01	MsG0880046390.01	-0.801259	9.794753e-49	4.656646e-46
MsG0180002099.01	MsG0880046390.01	-0.857412	1.661249e-62	4.096316e-59
MsG0180002425.01	MsG0880046390.01	-0.834293	3.259406e-56	3.851386e-53
MsG0180003114.01	MsG0880046390.01	-0.810986	8.773914e-51	5.367491e-48

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PPI

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Gene1	Gene2	Type
MsG0880046716.01	MsG0880046390.01	PPI
MsG0880046726.01	MsG0880046390.01	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046390.01.T01	MTR_4g107290	89.152	1014	9	3	1	967	1	960	0.0	1811
MsG0880046390.01.T01	MTR_4g107290	86.797	871	14	3	1	824	1	817	0.0	1512

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0880046390.01.T01	AT5G62600	65.381	1011	245	5	1	964	1	953	0.0	1312
MsG0880046390.01.T01	AT1G12930	21.327	844	521	35	148	931	200	960	1.33e-13	75.9

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Find 222 sgRNAs with CRISPR-Local

Find 1002 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAGCTTACTTCTCAAA+TGG	0.411218	8:-72760781	MsG0880046390.01.T01:CDS
AAAATGTGTACCCATGCTTT+AGG	0.430489	8:+72760557	None:intergenic
AAAATTCTGAAGAAAGCGAT+CGG	0.591927	8:+72762580	None:intergenic
AAACAATCATCTGCTATATC+AGG	0.347089	8:+72749245	None:intergenic
AAAGAAATGCAATATGGAAT+TGG	0.385953	8:+72748569	None:intergenic
AAATGGTCTTATCATATCAT+AGG	0.397067	8:+72748010	None:intergenic
AACCAAAATTCTGGTAATGC+TGG	0.513710	8:+72748464	None:intergenic
AACCAATGCTCCATCATAAG+AGG	0.445130	8:+72758147	None:intergenic
AACTAGCCTAACTGATAGAC+AGG	0.479700	8:+72747978	None:intergenic
AAGAATCCTGGTATATATTC+TGG	0.399730	8:+72761463	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAATATCACTGGGTTGTT+GGG	-	Chr8:72753000-72753019	MsG0880046390.01.T01:intron	30.0%
AAAACATTGGAAGAAGAGAA+TGG	-	Chr8:72757415-72757434	MsG0880046390.01.T01:intron	30.0%
AAAAGAGCTTACTTCTCAAA+TGG	-	Chr8:72749689-72749708	MsG0880046390.01.T01:intron	30.0%
AAACAATCATCTGCTATATC+AGG	+	Chr8:72761228-72761247	None:intergenic	30.0%
AAACATTGGAAGAAGAGAAT+GGG	-	Chr8:72757416-72757435	MsG0880046390.01.T01:intron	30.0%
AAGAATCCTGGTATATATTC+TGG	+	Chr8:72749010-72749029	None:intergenic	30.0%
AATAACTACTTGGCATTTAG+CGG	+	Chr8:72749132-72749151	None:intergenic	30.0%
AATATCCTTGGACTTCAATT+TGG	-	Chr8:72755225-72755244	MsG0880046390.01.T01:intron	30.0%
AATGTTTAGGAGGATGAAAA+GGG	-	Chr8:72751197-72751216	MsG0880046390.01.T01:intron	30.0%
AATTCTTAAATTGCACTTGC+TGG	-	Chr8:72754942-72754961	MsG0880046390.01.T01:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
Chr8	gene	72747639	72762853	72747639	ID=MsG0880046390.01;Name=MsG0880046390.01
Chr8	mRNA	72747639	72762853	72747639	ID=MsG0880046390.01.T01;Parent=MsG0880046390.01;Name=MsG0880046390.01.T01;_AED=0.39;_eAED=0.42;_QI=175\|0.84\|0.92\|1\|1\|1\|26\|408\|967
Chr8	exon	72747639	72748325	72747639	ID=MsG0880046390.01.T01:exon:11561;Parent=MsG0880046390.01.T01
Chr8	exon	72748422	72748599	72748422	ID=MsG0880046390.01.T01:exon:11560;Parent=MsG0880046390.01.T01
Chr8	exon	72749137	72749282	72749137	ID=MsG0880046390.01.T01:exon:11559;Parent=MsG0880046390.01.T01
Chr8	exon	72749367	72749459	72749367	ID=MsG0880046390.01.T01:exon:11558;Parent=MsG0880046390.01.T01
Chr8	exon	72751009	72751128	72751009	ID=MsG0880046390.01.T01:exon:11557;Parent=MsG0880046390.01.T01
Chr8	exon	72751906	72751960	72751906	ID=MsG0880046390.01.T01:exon:11556;Parent=MsG0880046390.01.T01
Chr8	exon	72752084	72752158	72752084	ID=MsG0880046390.01.T01:exon:11555;Parent=MsG0880046390.01.T01
Chr8	exon	72752265	72752353	72752265	ID=MsG0880046390.01.T01:exon:11554;Parent=MsG0880046390.01.T01
Chr8	exon	72752435	72752516	72752435	ID=MsG0880046390.01.T01:exon:11553;Parent=MsG0880046390.01.T01
Chr8	exon	72752611	72752734	72752611	ID=MsG0880046390.01.T01:exon:11552;Parent=MsG0880046390.01.T01
Chr8	exon	72753510	72753665	72753510	ID=MsG0880046390.01.T01:exon:11551;Parent=MsG0880046390.01.T01
Chr8	exon	72753752	72753884	72753752	ID=MsG0880046390.01.T01:exon:11550;Parent=MsG0880046390.01.T01
Chr8	exon	72754401	72754520	72754401	ID=MsG0880046390.01.T01:exon:11549;Parent=MsG0880046390.01.T01
Chr8	exon	72754810	72754892	72754810	ID=MsG0880046390.01.T01:exon:11548;Parent=MsG0880046390.01.T01
Chr8	exon	72755801	72755882	72755801	ID=MsG0880046390.01.T01:exon:11547;Parent=MsG0880046390.01.T01
Chr8	exon	72756371	72756470	72756371	ID=MsG0880046390.01.T01:exon:11546;Parent=MsG0880046390.01.T01
Chr8	exon	72756556	72756676	72756556	ID=MsG0880046390.01.T01:exon:11545;Parent=MsG0880046390.01.T01
Chr8	exon	72756822	72756897	72756822	ID=MsG0880046390.01.T01:exon:11544;Parent=MsG0880046390.01.T01
Chr8	exon	72758150	72758230	72758150	ID=MsG0880046390.01.T01:exon:11543;Parent=MsG0880046390.01.T01
Chr8	exon	72758351	72758478	72758351	ID=MsG0880046390.01.T01:exon:11542;Parent=MsG0880046390.01.T01
Chr8	exon	72759823	72759914	72759823	ID=MsG0880046390.01.T01:exon:11541;Parent=MsG0880046390.01.T01
Chr8	exon	72760568	72760608	72760568	ID=MsG0880046390.01.T01:exon:11540;Parent=MsG0880046390.01.T01
Chr8	exon	72760725	72760856	72760725	ID=MsG0880046390.01.T01:exon:11539;Parent=MsG0880046390.01.T01
Chr8	exon	72761438	72761584	72761438	ID=MsG0880046390.01.T01:exon:11538;Parent=MsG0880046390.01.T01
Chr8	exon	72761708	72761755	72761708	ID=MsG0880046390.01.T01:exon:11537;Parent=MsG0880046390.01.T01
Chr8	exon	72762556	72762853	72762556	ID=MsG0880046390.01.T01:exon:11536;Parent=MsG0880046390.01.T01
Chr8	five_prime_UTR	72762679	72762853	72762679	ID=MsG0880046390.01.T01:five_prime_utr;Parent=MsG0880046390.01.T01
Chr8	CDS	72762556	72762678	72762556	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72761708	72761755	72761708	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72761438	72761584	72761438	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72760725	72760856	72760725	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72760568	72760608	72760568	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72759823	72759914	72759823	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72758351	72758478	72758351	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72758150	72758230	72758150	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72756822	72756897	72756822	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72756556	72756676	72756556	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72756371	72756470	72756371	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72755801	72755882	72755801	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72754810	72754892	72754810	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72754401	72754520	72754401	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72753752	72753884	72753752	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72753510	72753665	72753510	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72752611	72752734	72752611	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72752435	72752516	72752435	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72752265	72752353	72752265	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72752084	72752158	72752084	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72751906	72751960	72751906	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72751009	72751128	72751009	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72749367	72749459	72749367	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72749137	72749282	72749137	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72748422	72748599	72748422	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	CDS	72748047	72748325	72748047	ID=MsG0880046390.01.T01:cds;Parent=MsG0880046390.01.T01
Chr8	three_prime_UTR	72747639	72748046	72747639	ID=MsG0880046390.01.T01:three_prime_utr;Parent=MsG0880046390.01.T01

Gene Sequence

>MsG0880046390.01.T01

ATGGAGCTTCAAAACACTGTCAAAGATGCCCTAAATGCACTCTACCATCACCCTGATGATACCGTTCGCATGCAAGCCGATCGCTTTCTTCAGAATTTTCAACGAACTCTCGATGCGTGGCAGAACTTATTGAAGATGTTTCACAGGGGTCCTCCAAAAGTCAGAACTCAGATTAGCATTGCAGTGGCTGCATTGGCCGTGCACGTGCCTGCGCAAGACTGGGGGGATGGTGGAATAGTGAAATGGCTCAGGGATGAGATGGATTCCAATCCAGAATATATACCAGGATTCTTGGAGTTACTTACAGTTTTACCAGAGGAAGTATTAAACTATAAGATAGCAGCTCGTCCAGAAAGGCGCCGTCAATTTGAAAAAGAGCTTACTTCTCAAATGGAGGTTGCTCTTAATATATTGACAGCTTGTTTGAGTATTGCTGAGCTTAAGGAGCAGGTTCTTGAGGCATTTGCTTCGTGGCTTCGCCTAAAGCATGGGATTCCCGGATCTGTTCTTAGTTCTCATCCATTAGTTCTCACAGCACTGTCGAACTTGAATTCTGAGCTACTTTCAGAGGCATCTGTAAATGTGATTTCCGAGTTGATACACTACACTGCAGCAGGAAACATTGATGGTGTTTCCACTAATGCGCCGTTAATTCAAGTCATTGTTCCTCAAGTTATGAATCTTAAATCACAGCTGAGTGATTCTACGAAGTGTAAAATTTATAATGCAATTTTTTGTGATAGCATTGATTTGACTTATAGCACTAGGTTGCCCTCTTATGATGGAGCATTGGATGAGGAAGACGTGAAGGCAATTGCTAGGTTATTTGCGGACATGGGTGATTCATATGTGGAACTGATTGCAACTGGTTCTGATGAATCAATGTTAATAGTGCATGCATTGTTGGAAGTTGCTTCTCATCCAGAATATGATATTGCTTCTATGACATTTAACTTCTGGCATAGTCTTCAGTTGAACTTAACTAGAAGGGAGTCCTATATTTCATATGGTAATGAAGCATGCATCGAAGCTGAGAGAAATAAGAGGCTGCAGGTTTTTCGTCCTGCTTATGAGTCACTTGTATCGCTGGTTAGCTACCGGGTTCAGTATCCTGAAGATTATCAAGATCTTTCGTCTGAGGACCTTAAGGATCTTAAGCATACTAAATTTGCTGTTGCGGATGTATTAACAGATGCTGCTTCAGTTCTTGGTGGTGATGCCACACTTAAAATTCTGTATATGAAACTTCTTGAGGCAGTATCTGGTAATAGTAGTAATGAACAAAAGGAATGGCGTCCAGCAGAAGCTGCTTTGTTTTGTATTCGGGCTATATCAAGTTATGTGTCAGTTGTTGAAGCAGAAGTAATGCCTCAGATCATGGCCTTGCTTCCGAAACTTCCTCCTGTACCCCAGTTACTCCAGACAGGTAATGTAAAGAAAAATTGTGTATTCACCTTCTCACGTGACTTACAGATTTATGAATTCTCTCCTTGTAATTCTGTACATGTCTGCGGAACTATTGGAGCTTATTCAAAATGGCTTGATACAGCACCATGTGGACTGTCTATACTCCCTTCAGTTTTAGATATCCTAATGAACGGAATGAGTACATCTGAAGAATGTGCAGCTGCTGCTGCTTTGGCGTTTAGGCACATCTGTGATGACTGCCGTAAAAAGCTTTGTGGATGCCTAGATGGTTTGTTCCACATCTACAATCGGACAGTTAGCGGGGAAGATAGTTTCAAAGTTTCTGCTGAAGACTCGTTGCACCTGGTTGAAGCCTTGAGTATGGTTGTTACTGAACTTCCTTTGGATGATGCTAAGAGAGCTCTTGAGGCATTATGCATACCAATTATATCTCCTTTACAGGAAGCCATCAATCAAGGTCCTGAAAGCTTAAGTAAAAGTTCTTGTCGTCAGTTAACGATTCATATCGATCGTTTTGCTTACATATTTAGATATGTAAAACATCCTCAAGTTGTGGCAGATGCTATCCAACGGCTTTGGCCTATTTTTAAAGCTATTTTTGACGTTCGTGCTTGGGACATGAGAACAATGGAATCTCTTTGCAGAGCATGTAAATATGCAGTGAGAACTTCTGGAAGGTTCATGGGGCTCACAATTGGTGCAATGCTGGAAGAGATTCAGAGTCTGTATATGCAGCACCACCAGCCATGCTTTCTTTATCTCTCTAGTGAAGTTATAAAGATATTTGGATCTGATCCATCTTGTGCTGACTACTTGAAGAATTTGATTGAGGCGCTTTTCCGGCACACAACGCGCCTTCTCACAAGTATTCAGGAATTCACAGCCCGGCCTGATATAGCAGATGATTGTTTTTTGTTGGCTTCAAGGTGTATTCGCTACTGTCCTCAGTTGTTTATCCCCTCGCCAGTTTTTCCTTCGTTAGTTGATTGCTCTATGATTGGGATCACAGTACAGCATAGGGAGGCTTCCAATTCCATATTGCATTTCTTTTCTGATATTTTTGATCTGGCAAACACCACAACGGGGGAGCCATTTTTACCAATCAGAGATAGTATAATTATTCCTAGAGGTTCCAGCATTACCAGAATTTTGGTTGCTTCATTAACTGGAGCACTTCCAAAATCTCGAGTAGAAGTGGTGTCTTACACACTACTGGCATTAACTCGATCATATGGGATGCTAGCACTGGAATGGGCAAAAAAGAGTATTACGTTAATTCCATCAACTGCTGTCACAGACTTGGAACGATCAAGATTCTTAAAAGCACTTTCAGATGTAGCATCTGGAGGTGATACTAATGGCCTATCTGTTCCAATTGAAGAGCTCTCAGATGTTTGCCGGCGCAATAGAGCAGTTCAGGAAATAGTTCAAGATGCTCTGAGACCACTCGAGTTGAATTTGGTGTGTGTATCATAG

Protein sequence

>MsG0880046390.01.T01

MELQNTVKDALNALYHHPDDTVRMQADRFLQNFQRTLDAWQNLLKMFHRGPPKVRTQISIAVAALAVHVPAQDWGDGGIVKWLRDEMDSNPEYIPGFLELLTVLPEEVLNYKIAARPERRRQFEKELTSQMEVALNILTACLSIAELKEQVLEAFASWLRLKHGIPGSVLSSHPLVLTALSNLNSELLSEASVNVISELIHYTAAGNIDGVSTNAPLIQVIVPQVMNLKSQLSDSTKCKIYNAIFCDSIDLTYSTRLPSYDGALDEEDVKAIARLFADMGDSYVELIATGSDESMLIVHALLEVASHPEYDIASMTFNFWHSLQLNLTRRESYISYGNEACIEAERNKRLQVFRPAYESLVSLVSYRVQYPEDYQDLSSEDLKDLKHTKFAVADVLTDAASVLGGDATLKILYMKLLEAVSGNSSNEQKEWRPAEAALFCIRAISSYVSVVEAEVMPQIMALLPKLPPVPQLLQTGNVKKNCVFTFSRDLQIYEFSPCNSVHVCGTIGAYSKWLDTAPCGLSILPSVLDILMNGMSTSEECAAAAALAFRHICDDCRKKLCGCLDGLFHIYNRTVSGEDSFKVSAEDSLHLVEALSMVVTELPLDDAKRALEALCIPIISPLQEAINQGPESLSKSSCRQLTIHIDRFAYIFRYVKHPQVVADAIQRLWPIFKAIFDVRAWDMRTMESLCRACKYAVRTSGRFMGLTIGAMLEEIQSLYMQHHQPCFLYLSSEVIKIFGSDPSCADYLKNLIEALFRHTTRLLTSIQEFTARPDIADDCFLLASRCIRYCPQLFIPSPVFPSLVDCSMIGITVQHREASNSILHFFSDIFDLANTTTGEPFLPIRDSIIIPRGSSITRILVASLTGALPKSRVEVVSYTLLALTRSYGMLALEWAKKSITLIPSTAVTDLERSRFLKALSDVASGGDTNGLSVPIEELSDVCRRNRAVQEIVQDALRPLELNLVCVS*