AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480021160.01

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021160.01.T03 MTR_4g068010 88.514 444 19 3 1 443 1 413 0.0 631
MsG0480021160.01.T01 MTR_4g068010 88.514 444 19 3 1 443 1 413 0.0 631
MsG0480021160.01.T02 MTR_4g068010 88.514 444 19 3 1 443 1 413 0.0 631
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480021160.01.T03 AT2G46200 47.404 443 166 8 1 443 1 376 6.19e-124 365
MsG0480021160.01.T03 AT2G46200 47.404 443 166 8 1 443 1 376 6.19e-124 365
MsG0480021160.01.T03 AT2G46200 45.215 418 162 8 1 418 1 351 1.37e-105 317
MsG0480021160.01.T03 AT2G46200 44.828 406 157 8 1 406 1 339 3.21e-98 298
MsG0480021160.01.T01 AT2G46200 47.404 443 166 8 1 443 1 376 6.19e-124 365
MsG0480021160.01.T01 AT2G46200 47.404 443 166 8 1 443 1 376 6.19e-124 365
MsG0480021160.01.T01 AT2G46200 45.215 418 162 8 1 418 1 351 1.37e-105 317
MsG0480021160.01.T01 AT2G46200 44.828 406 157 8 1 406 1 339 3.21e-98 298
MsG0480021160.01.T02 AT2G46200 47.404 443 166 8 1 443 1 376 6.19e-124 365
MsG0480021160.01.T02 AT2G46200 47.404 443 166 8 1 443 1 376 6.19e-124 365
MsG0480021160.01.T02 AT2G46200 45.215 418 162 8 1 418 1 351 1.37e-105 317
MsG0480021160.01.T02 AT2G46200 44.828 406 157 8 1 406 1 339 3.21e-98 298

Find 52 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCAAAGTCAAGTTCCTTT+TGG 0.217981 4:+54538989 MsG0480021160.01.T01:CDS
AAAATTCATGATTCAAGTTT+TGG 0.220637 4:+54537656 MsG0480021160.01.T01:five_prime_UTR
AAGGAGTTGGATGACTTTAT+TGG 0.247707 4:+54537612 MsG0480021160.01.T01:five_prime_UTR
GGACCGATCACAGACATTTC+TGG 0.278515 4:-54539016 None:intergenic
AAATTGCTTAAAATACAAAA+TGG 0.294290 4:-54537587 MsG0480021159.01.T01:intron
TACAATTTCAAATAACGGTT+TGG 0.311618 4:+54537751 MsG0480021160.01.T01:five_prime_UTR
GAACTTGACTTTGGTGGTTC+GGG 0.337746 4:-54538982 None:intergenic
ACAATTTCAAATAACGGTTT+GGG 0.350894 4:+54537752 MsG0480021160.01.T01:five_prime_UTR
GGAACTTGACTTTGGTGGTT+CGG 0.367502 4:-54538983 None:intergenic
GGTGGTTCGGGTGGTAATAT+TGG 0.395600 4:-54538970 None:intergenic
CACTGTGTACAGTGTAAATC+AGG 0.398319 4:-54538872 None:intergenic
CCACGCAGTCAAAACCGTTC+TGG 0.408656 4:-54537951 MsG0480021159.01.T01:intron
CAAAAGGAACTTGACTTTGG+TGG 0.419927 4:-54538988 None:intergenic
TTTGTTACAATTTCAAATAA+CGG 0.425065 4:+54537746 MsG0480021160.01.T01:five_prime_UTR
TTAAGCAATTTCAAAGGAGT+TGG 0.429192 4:+54537599 MsG0480021160.01.T01:five_prime_UTR
TAGAGTATCTTGCAATTCCC+TGG 0.448248 4:-54539037 None:intergenic
GAAATGTCTGTGATCGGTCC+AGG 0.451951 4:+54539019 MsG0480021160.01.T01:CDS
TTCAAATAACGGTTTGGGAG+TGG 0.459079 4:+54537757 MsG0480021160.01.T01:five_prime_UTR
TGTAACAAAGGTGGCTGGAG+TGG 0.470040 4:-54537732 MsG0480021159.01.T01:intron
TCCCAAAAGGAACTTGACTT+TGG 0.471225 4:-54538991 None:intergenic
TTCTTTCATGTCCACCCCTC+CGG 0.473006 4:-54537911 MsG0480021159.01.T01:intron
TCAAGAAAAGGTTGTGGTGG+TGG 0.483619 4:-54538934 None:intergenic
GGTGCAGACTGAAAAGGAAC+TGG 0.489260 4:-54538907 None:intergenic
GACATTTCTGGTCTCCCAAA+AGG 0.495679 4:-54539004 None:intergenic
GGTAATATTGGAAGCTGCAT+AGG 0.497498 4:-54538958 None:intergenic
AGCTGCATAGGTTCAAGAAA+AGG 0.516752 4:-54538946 None:intergenic
GAAATTGTAACAAAGGTGGC+TGG 0.521391 4:-54537737 MsG0480021159.01.T01:intron
GATACTCTAAATCTTGCAAA+GGG 0.523005 4:+54539051 MsG0480021160.01.T01:CDS
ATGCATCGCCGCCGGAGGGG+TGG 0.524272 4:+54537900 MsG0480021160.01.T01:five_prime_UTR
AAAGGTTGTGGTGGTGGCGG+AGG 0.533422 4:-54538928 None:intergenic
AGAAAAGGTTGTGGTGGTGG+CGG 0.538353 4:-54538931 None:intergenic
CTTGACTTTGGTGGTTCGGG+TGG 0.542283 4:-54538979 None:intergenic
GTTATTTGAAATTGTAACAA+AGG 0.546608 4:-54537744 MsG0480021159.01.T01:intron
AAACGTGAATGCATCGCCGC+CGG 0.549832 4:+54537892 MsG0480021160.01.T01:five_prime_UTR
GTGAATGCATCGCCGCCGGA+GGG 0.550024 4:+54537896 MsG0480021160.01.T01:five_prime_UTR
GTAACAAAGGTGGCTGGAGT+GGG 0.550562 4:-54537731 MsG0480021159.01.T01:intron
ATTTGAAATTGTAACAAAGG+TGG 0.551654 4:-54537741 MsG0480021159.01.T01:intron
CGTGAATGCATCGCCGCCGG+AGG 0.554883 4:+54537895 MsG0480021160.01.T01:five_prime_UTR
GGCGGAGGTGCAGACTGAAA+AGG 0.560104 4:-54538913 None:intergenic
AGATACTCTAAATCTTGCAA+AGG 0.591220 4:+54539050 MsG0480021160.01.T01:CDS
TTTCATGTCCACCCCTCCGG+CGG 0.591344 4:-54537908 MsG0480021159.01.T01:intron
AGACCAGAAATGTCTGTGAT+CGG 0.603717 4:+54539013 MsG0480021160.01.T01:CDS
GACGACAACGACGTCGCAGT+CGG 0.604065 4:+54537830 MsG0480021160.01.T01:intron
GAAGTTTGAAAACTCCAGAA+CGG 0.606135 4:+54537937 MsG0480021160.01.T01:five_prime_UTR
TCGAAATTAACAGCGATGGA+AGG 0.612492 4:-54537857 MsG0480021159.01.T01:intron
TGAATGCATCGCCGCCGGAG+GGG 0.618718 4:+54537897 MsG0480021160.01.T01:five_prime_UTR
GAAGTCGAAATTAACAGCGA+TGG 0.622818 4:-54537861 MsG0480021159.01.T01:intron
AAATGTCTGTGATCGGTCCA+GGG 0.626046 4:+54539020 MsG0480021160.01.T01:CDS
TTGCTTAAAATACAAAATGG+AGG 0.638335 4:-54537584 MsG0480021159.01.T01:intron
GGTTCAAGAAAAGGTTGTGG+TGG 0.642961 4:-54538937 None:intergenic
TACAACGTAAACAAGCTCCC+CGG 0.667353 4:+54537793 MsG0480021160.01.T01:intron
ATAGGTTCAAGAAAAGGTTG+TGG 0.678067 4:-54538940 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATAAACAAAATAG+AGG - Chr4:54540486-54540505 None:intergenic 10.0%
!! AAATTGCTTAAAATACAAAA+TGG - Chr4:54537590-54537609 MsG0480021159.01.T01:intron 15.0%
!! AATAACAACAATAATAAAAG+TGG - Chr4:54541802-54541821 None:intergenic 15.0%
!! ACCATCAAATTAAAAATTTA+TGG - Chr4:54541138-54541157 None:intergenic 15.0%
!! TTTGTTACAATTTCAAATAA+CGG + Chr4:54537746-54537765 MsG0480021160.01.T01:five_prime_UTR 15.0%
!!! ACCATAAATTTTTAATTTGA+TGG + Chr4:54541134-54541153 MsG0480021160.01.T01:intron 15.0%
!!! GATAATACTAAATTTTGTAA+AGG - Chr4:54541106-54541125 None:intergenic 15.0%
!!! GTAAATCAATTTCTTTTTTA+TGG + Chr4:54538065-54538084 MsG0480021160.01.T01:intron 15.0%
!!! GTTTGAAATAATTAAGAAAA+TGG - Chr4:54540197-54540216 None:intergenic 15.0%
!!! TCTTAATTATTTCAAACTTT+TGG + Chr4:54540200-54540219 MsG0480021160.01.T01:intron 15.0%
!!! TTTATTCTTTTATTGTTTAG+TGG + Chr4:54538807-54538826 MsG0480021160.01.T01:intron 15.0%
!! AAGCTAATAGAATTAAATCT+AGG + Chr4:54538300-54538319 MsG0480021160.01.T01:intron 20.0%
!! ATACAAAAGTTGAAAAAACA+AGG + Chr4:54540787-54540806 MsG0480021160.01.T01:CDS 20.0%
!! ATATTATTCCTGATAAAAAG+TGG + Chr4:54540096-54540115 MsG0480021160.01.T01:intron 20.0%
!! ATTTACAATTGTTCCTAAAT+AGG + Chr4:54538341-54538360 MsG0480021160.01.T01:intron 20.0%
!! CATATTAGATGATATATTCA+AGG - Chr4:54542247-54542266 None:intergenic 20.0%
!! TAATAATGATAGAACTCAAT+CGG - Chr4:54541582-54541601 None:intergenic 20.0%
!! TTAAGGTAACAAACTATTAT+AGG - Chr4:54540946-54540965 None:intergenic 20.0%
!!! AAAATTCATGATTCAAGTTT+TGG + Chr4:54537656-54537675 MsG0480021160.01.T01:five_prime_UTR 20.0%
!!! GGTAAATCATTTCTATTTTA+TGG + Chr4:54540556-54540575 MsG0480021160.01.T01:intron 20.0%
!!! GTTATTTGAAATTGTAACAA+AGG - Chr4:54537747-54537766 MsG0480021159.01.T01:intron 20.0%
!!! GTTGATTTGTTAAAAAATCT+AGG + Chr4:54539689-54539708 MsG0480021160.01.T01:intron 20.0%
!!! TATCATCTAATATGTTTTGA+AGG + Chr4:54542253-54542272 MsG0480021160.01.T01:three_prime_UTR 20.0%
!!! TCAATTTTTATTGTTTTGCT+TGG + Chr4:54540876-54540895 MsG0480021160.01.T01:intron 20.0%
!!! TGAATTCTAAAGAAACAAAA+AGG - Chr4:54541697-54541716 None:intergenic 20.0%
!!! TGCTAATCATCATTTTTTTT+AGG + Chr4:54542372-54542391 MsG0480021160.01.T01:three_prime_UTR 20.0%
!!! TGTATTTTAAGCAATTTCAA+AGG + Chr4:54537593-54537612 MsG0480021160.01.T01:five_prime_UTR 20.0%
!!! TGTTTCTTTAGAATTCATAT+TGG + Chr4:54541700-54541719 MsG0480021160.01.T01:intron 20.0%
! AAAAAAATGATGATTAGCAC+TGG - Chr4:54542371-54542390 None:intergenic 25.0%
! AAAAATTTATCATCTTCCTC+TGG - Chr4:54541267-54541286 None:intergenic 25.0%
! AAAATTTATCATCTTCCTCT+GGG - Chr4:54541266-54541285 None:intergenic 25.0%
! AAGATGATGTGATTCAAAAT+GGG - Chr4:54538582-54538601 MsG0480021159.01.T01:CDS 25.0%
! AATGTATAGCTATATCCATA+TGG - Chr4:54540628-54540647 None:intergenic 25.0%
! AATTTGTAGAGATGATTAGT+TGG - Chr4:54540154-54540173 None:intergenic 25.0%
! ACAATTTCAAATAACGGTTT+GGG + Chr4:54537752-54537771 MsG0480021160.01.T01:five_prime_UTR 25.0%
! ATAAAGTGCATAAGTCTAAA+CGG + Chr4:54539539-54539558 MsG0480021160.01.T01:CDS 25.0%
! ATAATCAAAATGCCAAACAT+TGG - Chr4:54541041-54541060 None:intergenic 25.0%
! ATATCAGTCACTATAAATGT+AGG - Chr4:54539819-54539838 None:intergenic 25.0%
! ATTATTTATGCATTGTGAGT+GGG - Chr4:54538710-54538729 None:intergenic 25.0%
! GAATTTGTAAACTTATTCGT+TGG - Chr4:54539904-54539923 None:intergenic 25.0%
! GAGTTCTATCATTATTATCA+TGG + Chr4:54541585-54541604 MsG0480021160.01.T01:CDS 25.0%
! TACAATTTCAAATAACGGTT+TGG + Chr4:54537751-54537770 MsG0480021160.01.T01:five_prime_UTR 25.0%
! TAGTTTGATGTACTTTATGT+AGG + Chr4:54539257-54539276 MsG0480021160.01.T01:intron 25.0%
! TATCATCTAGAGAAAAACAA+AGG + Chr4:54538116-54538135 MsG0480021160.01.T01:intron 25.0%
! TATGTAAGTTTCATATATGC+AGG + Chr4:54541231-54541250 MsG0480021160.01.T01:CDS 25.0%
! TATTGAAAAAAAAGAGTCAG+AGG + Chr4:54540513-54540532 MsG0480021160.01.T01:intron 25.0%
! TCTATTATTCTTGAATGTAC+AGG - Chr4:54538429-54538448 MsG0480021159.01.T01:CDS 25.0%
! TGGCAAATGTTAATAATTAG+TGG - Chr4:54540062-54540081 None:intergenic 25.0%
! TTAGTCAATTATGCTAAACT+TGG + Chr4:54539985-54540004 MsG0480021160.01.T01:intron 25.0%
! TTATCATTGTTGAATGTACT+AGG + Chr4:54542402-54542421 MsG0480021160.01.T01:three_prime_UTR 25.0%
! TTCTCTAGATGATAAATTTC+AGG - Chr4:54538110-54538129 MsG0480021159.01.T01:intron 25.0%
! TTGCTTAAAATACAAAATGG+AGG - Chr4:54537587-54537606 MsG0480021159.01.T01:intron 25.0%
!! ATTCAGAAATGATAGTGATT+TGG + Chr4:54542518-54542537 MsG0480021160.01.T01:three_prime_UTR 25.0%
!! ATTTGAAATTGTAACAAAGG+TGG - Chr4:54537744-54537763 MsG0480021159.01.T01:intron 25.0%
!! GTAAATTTTTGTACAAGTGA+TGG + Chr4:54540535-54540554 MsG0480021160.01.T01:intron 25.0%
!! TGTATTGCAAACTGATTTAA+CGG - Chr4:54540288-54540307 None:intergenic 25.0%
!! TTCAGAAATGATAGTGATTT+GGG + Chr4:54542519-54542538 MsG0480021160.01.T01:three_prime_UTR 25.0%
!! TTGCTTAAATGTAGATTTTG+CGG + Chr4:54538733-54538752 MsG0480021160.01.T01:intron 25.0%
!! TTTCAACTTTTGTATCCTTA+TGG - Chr4:54540782-54540801 None:intergenic 25.0%
!!! ATATGTTTTGAAGGTTTGAA+TGG + Chr4:54542262-54542281 MsG0480021160.01.T01:three_prime_UTR 25.0%
!!! TAAATTTTTTGAGAGAGTTC+AGG + Chr4:54541278-54541297 MsG0480021160.01.T01:CDS 25.0%
!!! TAATATGCGCATTTTTTGAA+TGG - Chr4:54540082-54540101 None:intergenic 25.0%
!!! TTCTTGTTGTTTTGTTTTTC+AGG + Chr4:54538846-54538865 MsG0480021160.01.T01:intron 25.0%
!!! TTCTTTAGAATTCATATTGG+TGG + Chr4:54541703-54541722 MsG0480021160.01.T01:intron 25.0%
!!! TTGATAATTGTTTTTGCCAA+AGG + Chr4:54539838-54539857 MsG0480021160.01.T01:intron 25.0%
AAAAGATAAATGTGGCAACA+AGG - Chr4:54540917-54540936 None:intergenic 30.0%
AAAATGAAACTTCTTACGCT+AGG + Chr4:54541949-54541968 MsG0480021160.01.T01:intron 30.0%
AAAGATAAATGTGGCAACAA+GGG - Chr4:54540916-54540935 None:intergenic 30.0%
AACACAATGAGTGTTTATAC+TGG - Chr4:54539213-54539232 None:intergenic 30.0%
AAGATGATCAAAGAGAGTAA+AGG + Chr4:54539301-54539320 MsG0480021160.01.T01:CDS 30.0%
AATTATGCTAAACTTGGAGT+TGG + Chr4:54539991-54540010 MsG0480021160.01.T01:intron 30.0%
AGACAATAGCTACAATAAAG+AGG - Chr4:54539648-54539667 None:intergenic 30.0%
AGATACTCTAAATCTTGCAA+AGG + Chr4:54539050-54539069 MsG0480021160.01.T01:CDS 30.0%
AGATGATCAAAGAGAGTAAA+GGG + Chr4:54539302-54539321 MsG0480021160.01.T01:CDS 30.0%
AGATGATGTGATTCAAAATG+GGG - Chr4:54538581-54538600 MsG0480021159.01.T01:CDS 30.0%
AGATTCAAGGAATGTGATTA+CGG - Chr4:54538394-54538413 MsG0480021159.01.T01:CDS 30.0%
ATGTACTTTATGTAGGCAAA+AGG + Chr4:54539264-54539283 MsG0480021160.01.T01:intron 30.0%
ATTCTGTTCTATCTACCATA+TGG + Chr4:54540610-54540629 MsG0480021160.01.T01:intron 30.0%
CAATGATGAAAGTCAGATTA+AGG + Chr4:54541428-54541447 MsG0480021160.01.T01:CDS 30.0%
CATAAATCTGCATTCAGAAT+CGG - Chr4:54540979-54540998 None:intergenic 30.0%
CATTATTTATGCATTGTGAG+TGG - Chr4:54538711-54538730 None:intergenic 30.0%
GAAGATGATGTGATTCAAAA+TGG - Chr4:54538583-54538602 MsG0480021159.01.T01:CDS 30.0%
GAATCGGAACTATGAATTTA+AGG - Chr4:54540963-54540982 None:intergenic 30.0%
GATACTCTAAATCTTGCAAA+GGG + Chr4:54539051-54539070 MsG0480021160.01.T01:CDS 30.0%
GCATAATTGACTAATCAATC+AGG - Chr4:54539979-54539998 None:intergenic 30.0%
GTATAAACACTCATTGTGTT+TGG + Chr4:54539213-54539232 MsG0480021160.01.T01:intron 30.0%
TTAAAGAATTACGCTCCATA+AGG + Chr4:54540764-54540783 MsG0480021160.01.T01:CDS 30.0%
TTAAGCAATTTCAAAGGAGT+TGG + Chr4:54537599-54537618 MsG0480021160.01.T01:five_prime_UTR 30.0%
TTTATTTAATACCTTCCTCC+CGG - Chr4:54541928-54541947 None:intergenic 30.0%
TTTCGACGGTTTAATGAAAT+TGG - Chr4:54538172-54538191 MsG0480021159.01.T01:CDS 30.0%
! ATGCACTTTATTTGTAAACC+TGG - Chr4:54539530-54539549 None:intergenic 30.0%
! GGAAGTACAAAAGATAAATG+TGG - Chr4:54540925-54540944 None:intergenic 30.0%
! TCGTCAAACTCTAAAAATTC+CGG - Chr4:54537815-54537834 MsG0480021159.01.T01:intron 30.0%
! TGATTTGTCGAAACAAAAAG+TGG - Chr4:54538781-54538800 None:intergenic 30.0%
! TTTTCAGCTTAAATCTCTCT+CGG + Chr4:54539148-54539167 MsG0480021160.01.T01:intron 30.0%
!! AAGTTTTATGAAGTGTCTAG+AGG + Chr4:54539363-54539382 MsG0480021160.01.T01:CDS 30.0%
!! TTTCTTTTGAAAGTTTCCCT+TGG - Chr4:54541407-54541426 None:intergenic 30.0%
!!! ATTTCCTTTTGTTTTGCCTT+TGG + Chr4:54540417-54540436 MsG0480021160.01.T01:intron 30.0%
!!! CTCTGACATTTTTCAAGATT+TGG + Chr4:54539941-54539960 MsG0480021160.01.T01:intron 30.0%
!!! TTTCCTTTTGTTTTGCCTTT+GGG + Chr4:54540418-54540437 MsG0480021160.01.T01:intron 30.0%
AAAAAGTGGAGCTAGTTGAA+AGG + Chr4:54540110-54540129 MsG0480021160.01.T01:intron 35.0%
AAGGAGTTGGATGACTTTAT+TGG + Chr4:54537612-54537631 MsG0480021160.01.T01:five_prime_UTR 35.0%
AGTCAGATTAAGGAGAACAA+CGG + Chr4:54541438-54541457 MsG0480021160.01.T01:CDS 35.0%
AGTCTAAACGGAATAAACTC+TGG + Chr4:54539551-54539570 MsG0480021160.01.T01:CDS 35.0%
ATAACCTTTCAGATAGCCTT+TGG - Chr4:54539857-54539876 None:intergenic 35.0%
ATAGGTTCAAGAAAAGGTTG+TGG - Chr4:54538943-54538962 None:intergenic 35.0%
ATCAAGTTCTTCAGAGTTCA+CGG - Chr4:54540585-54540604 None:intergenic 35.0%
ATTTGATCAAATTGACCGAG+AGG + Chr4:54539722-54539741 MsG0480021160.01.T01:CDS 35.0%
CAAGGAAATTGCAAGTATCA+AGG + Chr4:54539771-54539790 MsG0480021160.01.T01:CDS 35.0%
CATCCAATTCTGACTTTGTT+TGG - Chr4:54538221-54538240 MsG0480021159.01.T01:CDS 35.0%
CGATTCTGAATGCAGATTTA+TGG + Chr4:54540977-54540996 MsG0480021160.01.T01:intron 35.0%
CTAACCTGCATGAGATTATT+CGG - Chr4:54541880-54541899 None:intergenic 35.0%
CTTGATACTTGCAATTTCCT+TGG - Chr4:54539773-54539792 None:intergenic 35.0%
GAAGAAGAAATTAGAGTCTG+AGG + Chr4:54540387-54540406 MsG0480021160.01.T01:CDS 35.0%
GAAGTTTGAAAACTCCAGAA+CGG + Chr4:54537937-54537956 MsG0480021160.01.T01:five_prime_UTR 35.0%
GATCCAAACAAAGTCAGAAT+TGG + Chr4:54538215-54538234 MsG0480021160.01.T01:intron 35.0%
GATTATTCGGCAGTCAATAA+TGG - Chr4:54541867-54541886 None:intergenic 35.0%
GTTAAAACTAAAAGCTCAGC+TGG + Chr4:54539447-54539466 MsG0480021160.01.T01:CDS 35.0%
GTTGAATGTACTAGGAAAGA+AGG + Chr4:54542410-54542429 MsG0480021160.01.T01:three_prime_UTR 35.0%
TAAACCGTCGAAATACAAGA+TGG + Chr4:54538179-54538198 MsG0480021160.01.T01:intron 35.0%
TATAGAAACCCAAGAAGCAA+TGG + Chr4:54539399-54539418 MsG0480021160.01.T01:CDS 35.0%
TCAAAATTAGGTGTGAGGTT+TGG - Chr4:54538667-54538686 None:intergenic 35.0%
TCTAGTAACATAGCATCTGA+AGG + Chr4:54541516-54541535 MsG0480021160.01.T01:CDS 35.0%
TCTTTACTGTTCACTTGTTC+AGG + Chr4:54540232-54540251 MsG0480021160.01.T01:intron 35.0%
TTGCATCAAAATTAGGTGTG+AGG - Chr4:54538672-54538691 None:intergenic 35.0%
TTGTTCCAACCATCCAATTA+AGG + Chr4:54538618-54538637 MsG0480021160.01.T01:intron 35.0%
! AACTCTGGAGGAAGAAAAAA+AGG + Chr4:54539566-54539585 MsG0480021160.01.T01:CDS 35.0%
! ACCAAAGTCAAGTTCCTTTT+GGG + Chr4:54538990-54539009 MsG0480021160.01.T01:CDS 35.0%
! CACTGGAATTTTACACAGAA+TGG - Chr4:54542354-54542373 None:intergenic 35.0%
! CGTCAAACTCTAAAAATTCC+GGG - Chr4:54537814-54537833 MsG0480021159.01.T01:intron 35.0%
! CTTCATGTATCGACCTATTT+AGG - Chr4:54538357-54538376 MsG0480021159.01.T01:CDS 35.0%
! GAAAAAAAGGAAGCGTATTG+CGG + Chr4:54539579-54539598 MsG0480021160.01.T01:CDS 35.0%
! GTCAAACTCTAAAAATTCCG+GGG - Chr4:54537813-54537832 MsG0480021159.01.T01:intron 35.0%
! GTGTGGTTTGCATCAAAATT+AGG - Chr4:54538679-54538698 None:intergenic 35.0%
! TCTGAAACATGTCTATATGC+AGG + Chr4:54540321-54540340 MsG0480021160.01.T01:intron 35.0%
! TGAGTTCAAGTTCCAATGTT+TGG + Chr4:54541026-54541045 MsG0480021160.01.T01:intron 35.0%
!! CTATTAGCTTTGCTCATGTT+AGG - Chr4:54538290-54538309 MsG0480021159.01.T01:CDS 35.0%
!! TCATGATTCAAGTTTTGGCA+AGG + Chr4:54537661-54537680 MsG0480021160.01.T01:five_prime_UTR 35.0%
!!! AACTAGCTCCACTTTTTATC+AGG - Chr4:54540107-54540126 None:intergenic 35.0%
!!! TAGTTTTTTCTCCTTCGTCT+GGG - Chr4:54540033-54540052 None:intergenic 35.0%
!!! TTAGTTTTTTCTCCTTCGTC+TGG - Chr4:54540034-54540053 None:intergenic 35.0%
!!! TTCCTTTTGTTTTGCCTTTG+GGG + Chr4:54540419-54540438 MsG0480021160.01.T01:intron 35.0%
AACCCCAAAGGCAAAACAAA+AGG - Chr4:54540424-54540443 None:intergenic 40.0%
AACGCTGTGATGTCCTTAAT+TGG - Chr4:54538634-54538653 None:intergenic 40.0%
AATCTCATGCAGGTTAGAAG+AGG + Chr4:54541883-54541902 MsG0480021160.01.T01:intron 40.0%
AGACCAGAAATGTCTGTGAT+CGG + Chr4:54539013-54539032 MsG0480021160.01.T01:CDS 40.0%
AGCTGCATAGGTTCAAGAAA+AGG - Chr4:54538949-54538968 None:intergenic 40.0%
AGTTGCATCTAATCCCTCTT+CGG - Chr4:54541484-54541503 None:intergenic 40.0%
ATTGATCGCAAGATTGGTGA+TGG + Chr4:54542167-54542186 MsG0480021160.01.T01:three_prime_UTR 40.0%
CAAAAGGAACTTGACTTTGG+TGG - Chr4:54538991-54539010 None:intergenic 40.0%
CACTGTGTACAGTGTAAATC+AGG - Chr4:54538875-54538894 None:intergenic 40.0%
CATGGAAGCAACAATGACAT+GGG + Chr4:54541603-54541622 MsG0480021160.01.T01:CDS 40.0%
CCATCCATCTTGTATTTCGA+CGG - Chr4:54538186-54538205 MsG0480021159.01.T01:CDS 40.0%
CGTCGAAATACAAGATGGAT+GGG + Chr4:54538184-54538203 MsG0480021160.01.T01:intron 40.0%
CTAAACGGAATAAACTCTGG+AGG + Chr4:54539554-54539573 MsG0480021160.01.T01:CDS 40.0%
CTGTGATGTCCTTAATTGGA+TGG - Chr4:54538630-54538649 None:intergenic 40.0%
GAAATTGTAACAAAGGTGGC+TGG - Chr4:54537740-54537759 MsG0480021159.01.T01:intron 40.0%
GAAGTCGAAATTAACAGCGA+TGG - Chr4:54537864-54537883 MsG0480021159.01.T01:intron 40.0%
GAGCCATGAGTTTCTTCTAA+AGG - Chr4:54539328-54539347 None:intergenic 40.0%
GATGTCCTTAATTGGATGGT+TGG - Chr4:54538626-54538645 None:intergenic 40.0%
GCACAAAGTTACAAGGAACA+GGG - Chr4:54542042-54542061 None:intergenic 40.0%
GCAGAGTCAAGAAAGATTCA+AGG - Chr4:54538407-54538426 MsG0480021159.01.T01:CDS 40.0%
GGTAATATTGGAAGCTGCAT+AGG - Chr4:54538961-54538980 None:intergenic 40.0%
GTCAGATTAAGGAGAACAAC+GGG + Chr4:54541439-54541458 MsG0480021160.01.T01:CDS 40.0%
GTCGAAATACAAGATGGATG+GGG + Chr4:54538185-54538204 MsG0480021160.01.T01:intron 40.0%
GTGAGTGGGTAAAAAAAGTG+TGG - Chr4:54538696-54538715 None:intergenic 40.0%
TATGCTAAACTTGGAGTTGG+AGG + Chr4:54539994-54540013 MsG0480021160.01.T01:intron 40.0%
TCATCCGCAACATATCTGAA+TGG - Chr4:54539475-54539494 None:intergenic 40.0%
TCATGGAAGCAACAATGACA+TGG + Chr4:54541602-54541621 MsG0480021160.01.T01:CDS 40.0%
TCCCAAAAGGAACTTGACTT+TGG - Chr4:54538994-54539013 None:intergenic 40.0%
TCGAAATTAACAGCGATGGA+AGG - Chr4:54537860-54537879 MsG0480021159.01.T01:intron 40.0%
TGCACAAAGTTACAAGGAAC+AGG - Chr4:54542043-54542062 None:intergenic 40.0%
TTCAACAGCCATTGCTTCTT+GGG - Chr4:54539410-54539429 None:intergenic 40.0%
TTTGCCAAAGGCTATCTGAA+AGG + Chr4:54539850-54539869 MsG0480021160.01.T01:intron 40.0%
! CACCAAAGTCAAGTTCCTTT+TGG + Chr4:54538989-54539008 MsG0480021160.01.T01:CDS 40.0%
! GAAGGTTTGAATGGTTTTCC+TGG + Chr4:54542271-54542290 MsG0480021160.01.T01:three_prime_UTR 40.0%
! GCTGAAAAGCAACTTTTACG+TGG - Chr4:54539136-54539155 None:intergenic 40.0%
! GGCAAAGGTTACTTTGCTTT+GGG + Chr4:54539609-54539628 MsG0480021160.01.T01:intron 40.0%
! TAGAGTATCTTGCAATTCCC+TGG - Chr4:54539040-54539059 None:intergenic 40.0%
! TGGCAAAGGTTACTTTGCTT+TGG + Chr4:54539608-54539627 MsG0480021160.01.T01:intron 40.0%
! TTCAAATAACGGTTTGGGAG+TGG + Chr4:54537757-54537776 MsG0480021160.01.T01:five_prime_UTR 40.0%
!!! CGTGGGTTTTCAGGTATAAT+GGG + Chr4:54537969-54537988 MsG0480021160.01.T01:intron 40.0%
AAATGTCTGTGATCGGTCCA+GGG + Chr4:54539020-54539039 MsG0480021160.01.T01:CDS 45.0%
ACCAATCTTGCGATCAATGC+TGG - Chr4:54542165-54542184 None:intergenic 45.0%
ACTGCCGAATAATCTCATGC+AGG + Chr4:54541873-54541892 MsG0480021160.01.T01:intron 45.0%
AGTCCATAGTGTAACCGAAG+AGG + Chr4:54541467-54541486 MsG0480021160.01.T01:CDS 45.0%
ATCCCTCTTCGGTTACACTA+TGG - Chr4:54541473-54541492 None:intergenic 45.0%
ATCGCAAGATCGTACGATCT+TGG + Chr4:54542198-54542217 MsG0480021160.01.T01:three_prime_UTR 45.0%
ATGGGAAGAGAAATCAGCAG+TGG + Chr4:54539504-54539523 MsG0480021160.01.T01:CDS 45.0%
ATGGGATGCCTATATTCGAC+CGG + Chr4:54541906-54541925 MsG0480021160.01.T01:CDS 45.0%
CATGCAGGTTAGAAGAGGAT+GGG + Chr4:54541888-54541907 MsG0480021160.01.T01:intron 45.0%
CCGTCGAAATACAAGATGGA+TGG + Chr4:54538183-54538202 MsG0480021160.01.T01:intron 45.0%
CGAGATATGGGCATCTTACT+TGG + Chr4:54542106-54542125 MsG0480021160.01.T01:CDS 45.0%
CGGTGATAAGAGATGGTGAT+GGG - Chr4:54538550-54538569 MsG0480021159.01.T01:intron 45.0%
CTTCAACAGCCATTGCTTCT+TGG - Chr4:54539411-54539430 None:intergenic 45.0%
GAAGCAATGGCATTGTTGGA+AGG - Chr4:54538470-54538489 MsG0480021159.01.T01:intron 45.0%
GCATCTGAAGGACAGAACTA+TGG + Chr4:54541528-54541547 MsG0480021160.01.T01:CDS 45.0%
GGAAGGCTTACAGTTTGCAA+AGG - Chr4:54538453-54538472 MsG0480021159.01.T01:CDS 45.0%
GGAGCCATTCAGATATGTTG+CGG + Chr4:54539468-54539487 MsG0480021160.01.T01:CDS 45.0%
GGTTCAAGAAAAGGTTGTGG+TGG - Chr4:54538940-54538959 None:intergenic 45.0%
GTAAGATGCCCATATCTCGT+TGG - Chr4:54542105-54542124 None:intergenic 45.0%
GTCCATAGTGTAACCGAAGA+GGG + Chr4:54541468-54541487 MsG0480021160.01.T01:CDS 45.0%
TACAACGTAAACAAGCTCCC+CGG + Chr4:54537793-54537812 MsG0480021160.01.T01:intron 45.0%
TATTGCGGAAATGCTGGCAA+AGG + Chr4:54539594-54539613 MsG0480021160.01.T01:CDS 45.0%
TCAAGAAAAGGTTGTGGTGG+TGG - Chr4:54538937-54538956 None:intergenic 45.0%
TCATGCAGGTTAGAAGAGGA+TGG + Chr4:54541887-54541906 MsG0480021160.01.T01:intron 45.0%
TCGCAAGATCGTACGATCTT+GGG + Chr4:54542199-54542218 MsG0480021160.01.T01:three_prime_UTR 45.0%
TCTGAAGGACAGAACTATGG+AGG + Chr4:54541531-54541550 MsG0480021160.01.T01:CDS 45.0%
TGATTCAAAATGGGGCCTCT+CGG - Chr4:54538573-54538592 MsG0480021159.01.T01:CDS 45.0%
TGCAGAAGCAATGGCATTGT+TGG - Chr4:54538474-54538493 MsG0480021159.01.T01:intron 45.0%
TGCCATTGCTTCTGCAACAT+CGG + Chr4:54538478-54538497 MsG0480021160.01.T01:intron 45.0%
TGCGACTGCACAAAGTTACA+AGG - Chr4:54542049-54542068 None:intergenic 45.0%
TGCTGCCAAAAAGCTTACAC+CGG - Chr4:54542303-54542322 None:intergenic 45.0%
TGGAGGAGCTTATGATCCTT+TGG + Chr4:54541548-54541567 MsG0480021160.01.T01:CDS 45.0%
TTGCTATGTAATGCGCAGCT+TGG + Chr4:54538253-54538272 MsG0480021160.01.T01:intron 45.0%
TTGTTCTAGCAGCTGGTTGT+TGG - Chr4:54538526-54538545 MsG0480021159.01.T01:intron 45.0%
! AAACCCCGGTGTAAGCTTTT+TGG + Chr4:54542295-54542314 MsG0480021160.01.T01:three_prime_UTR 45.0%
! ATGAAGTGTCTAGAGGACAG+AGG + Chr4:54539370-54539389 MsG0480021160.01.T01:CDS 45.0%
! CATCTTCCTCTGGGAGAAAA+TGG - Chr4:54541257-54541276 None:intergenic 45.0%
! GAACTTGACTTTGGTGGTTC+GGG - Chr4:54538985-54539004 None:intergenic 45.0%
! GGAACTTGACTTTGGTGGTT+CGG - Chr4:54538986-54539005 None:intergenic 45.0%
! GGGCCTTTAGAAGAAACTCA+TGG + Chr4:54539322-54539341 MsG0480021160.01.T01:CDS 45.0%
! TATGGGCATCTTACTTGGTG+AGG + Chr4:54542111-54542130 MsG0480021160.01.T01:CDS 45.0%
! TGAAGTGTCTAGAGGACAGA+GGG + Chr4:54539371-54539390 MsG0480021160.01.T01:CDS 45.0%
!! AAGTTTCCCTTGGTTCTGCA+TGG - Chr4:54541397-54541416 None:intergenic 45.0%
!! ACCAGCATTGATCGCAAGAT+TGG + Chr4:54542161-54542180 MsG0480021160.01.T01:three_prime_UTR 45.0%
!! ACTGCTGATTTCTCTTCCCA+TGG - Chr4:54539505-54539524 None:intergenic 45.0%
!! CGGCAGTCAATAATGGACTT+AGG - Chr4:54541860-54541879 None:intergenic 45.0%
!! GACATTTCTGGTCTCCCAAA+AGG - Chr4:54539007-54539026 None:intergenic 45.0%
!! TTTTGACTGCGTGGGTTTTC+AGG + Chr4:54537960-54537979 MsG0480021160.01.T01:five_prime_UTR 45.0%
!!! GCGTGGGTTTTCAGGTATAA+TGG + Chr4:54537968-54537987 MsG0480021160.01.T01:intron 45.0%
AAACTTGGAGTTGGAGGTCC+TGG + Chr4:54540000-54540019 MsG0480021160.01.T01:intron 50.0%
AACTTGGAGTTGGAGGTCCT+GGG + Chr4:54540001-54540020 MsG0480021160.01.T01:intron 50.0%
AAGAGAAATCAGCAGTGGCC+AGG + Chr4:54539509-54539528 MsG0480021160.01.T01:CDS 50.0%
ACATCGGAGTCGGGTAGAAT+CGG + Chr4:54538494-54538513 MsG0480021160.01.T01:intron 50.0%
ACTTTGTGCAGTCGCATACC+AGG + Chr4:54542053-54542072 MsG0480021160.01.T01:intron 50.0%
AGATGCAATTGCAACTGCCG+AGG + Chr4:54541359-54541378 MsG0480021160.01.T01:CDS 50.0%
AGGAAAGCCATGCAGAACCA+AGG + Chr4:54541387-54541406 MsG0480021160.01.T01:CDS 50.0%
CATGGCTTTCCTGGATTCCT+CGG - Chr4:54541379-54541398 None:intergenic 50.0%
CTCCGATGTTGCAGAAGCAA+TGG - Chr4:54538483-54538502 MsG0480021159.01.T01:intron 50.0%
CTGCCAAAAAGCTTACACCG+GGG - Chr4:54542301-54542320 None:intergenic 50.0%
CTTGCGATCAATGCTGGTGA+TGG - Chr4:54542159-54542178 None:intergenic 50.0%
CTTTGCTCATGTTAGGCGTG+TGG - Chr4:54538283-54538302 MsG0480021159.01.T01:CDS 50.0%
GAAATGTCTGTGATCGGTCC+AGG + Chr4:54539019-54539038 MsG0480021160.01.T01:CDS 50.0%
GAAGCGTATTGCGGAAATGC+TGG + Chr4:54539588-54539607 MsG0480021160.01.T01:CDS 50.0%
GCGGTGATAAGAGATGGTGA+TGG - Chr4:54538551-54538570 MsG0480021159.01.T01:intron 50.0%
GCTGCCAAAAAGCTTACACC+GGG - Chr4:54542302-54542321 None:intergenic 50.0%
GGAAAGCCATGCAGAACCAA+GGG + Chr4:54541388-54541407 MsG0480021160.01.T01:CDS 50.0%
GGACCGATCACAGACATTTC+TGG - Chr4:54539019-54539038 None:intergenic 50.0%
GGTGCAGACTGAAAAGGAAC+TGG - Chr4:54538910-54538929 None:intergenic 50.0%
GTAACAAAGGTGGCTGGAGT+GGG - Chr4:54537734-54537753 MsG0480021159.01.T01:intron 50.0%
GTACGATCTTGCGATTCCGA+TGG - Chr4:54542193-54542212 None:intergenic 50.0%
TCCTCCAGCCAACGAGATAT+GGG + Chr4:54542094-54542113 MsG0480021160.01.T01:CDS 50.0%
TGACATGGGCACATTGATCG+AGG + Chr4:54541617-54541636 MsG0480021160.01.T01:CDS 50.0%
TGACCGAGAGGCTGATGAAT+GGG + Chr4:54539734-54539753 MsG0480021160.01.T01:CDS 50.0%
TGCGGATGAAGCAAGTCCAT+GGG + Chr4:54539486-54539505 MsG0480021160.01.T01:CDS 50.0%
TGCTTCTGCAACATCGGAGT+CGG + Chr4:54538484-54538503 MsG0480021160.01.T01:intron 50.0%
TGGCACGTAACTGTGCATGA+AGG + Chr4:54541723-54541742 MsG0480021160.01.T01:intron 50.0%
TGGGATGCCTATATTCGACC+GGG + Chr4:54541907-54541926 MsG0480021160.01.T01:CDS 50.0%
TGTAACAAAGGTGGCTGGAG+TGG - Chr4:54537735-54537754 MsG0480021159.01.T01:intron 50.0%
TTCTTTCATGTCCACCCCTC+CGG - Chr4:54537914-54537933 MsG0480021159.01.T01:intron 50.0%
TTGACCGAGAGGCTGATGAA+TGG + Chr4:54539733-54539752 MsG0480021160.01.T01:CDS 50.0%
TTGCGGATGAAGCAAGTCCA+TGG + Chr4:54539485-54539504 MsG0480021160.01.T01:CDS 50.0%
! ACAGCTCGAGTTGCTCTTGA+TGG + Chr4:54540732-54540751 MsG0480021160.01.T01:intron 50.0%
! AGAAGAGGAGCGTGAAGCTT+TGG + Chr4:54541311-54541330 MsG0480021160.01.T01:CDS 50.0%
! ATGGTTTTCCTGGCAAACCC+CGG + Chr4:54542281-54542300 MsG0480021160.01.T01:three_prime_UTR 50.0%
! GAAGTGTCTAGAGGACAGAG+GGG + Chr4:54539372-54539391 MsG0480021160.01.T01:CDS 50.0%
! GATGGGTTTGTTCTAGCAGC+TGG - Chr4:54538533-54538552 MsG0480021159.01.T01:intron 50.0%
! GGTGGTTCGGGTGGTAATAT+TGG - Chr4:54538973-54538992 None:intergenic 50.0%
!! AGAAAAGGTTGTGGTGGTGG+CGG - Chr4:54538934-54538953 None:intergenic 50.0%
!! GCAAGATTGGTGATGGCCAT+CGG + Chr4:54542174-54542193 MsG0480021160.01.T01:three_prime_UTR 50.0%
!! TTGGTTCTGCATGGCTTTCC+TGG - Chr4:54541388-54541407 None:intergenic 50.0%
!!! CAGAACGGTTTTGACTGCGT+GGG + Chr4:54537952-54537971 MsG0480021160.01.T01:five_prime_UTR 50.0%
!!! GTTTTGCCTTTGGGGTTGCA+GGG + Chr4:54540427-54540446 MsG0480021160.01.T01:intron 50.0%
!!! TGTTTTGCCTTTGGGGTTGC+AGG + Chr4:54540426-54540445 MsG0480021160.01.T01:intron 50.0%
AAACGTGAATGCATCGCCGC+CGG + Chr4:54537892-54537911 MsG0480021160.01.T01:five_prime_UTR 55.0%
ACCGAGAGGCTGATGAATGG+GGG + Chr4:54539736-54539755 MsG0480021160.01.T01:CDS 55.0%
AGGCTGATGAATGGGGGCTA+GGG + Chr4:54539742-54539761 MsG0480021160.01.T01:CDS 55.0%
CAGTCGCATACCAGGACACT+GGG + Chr4:54542061-54542080 MsG0480021160.01.T01:intron 55.0%
CATCTCTTATCACCGCCGAG+AGG + Chr4:54538555-54538574 MsG0480021160.01.T01:intron 55.0%
CCACGCAGTCAAAACCGTTC+TGG - Chr4:54537954-54537973 MsG0480021159.01.T01:intron 55.0%
CCTATATTCGACCGGGAGGA+AGG + Chr4:54541914-54541933 MsG0480021160.01.T01:CDS 55.0%
CCTTCCTCCCGGTCGAATAT+AGG - Chr4:54541917-54541936 None:intergenic 55.0%
CTCCTCCAGCCAACGAGATA+TGG + Chr4:54542093-54542112 MsG0480021160.01.T01:CDS 55.0%
CTCTCGGCGGTGATAAGAGA+TGG - Chr4:54538557-54538576 MsG0480021159.01.T01:intron 55.0%
GACCGAGAGGCTGATGAATG+GGG + Chr4:54539735-54539754 MsG0480021160.01.T01:CDS 55.0%
GATGCCCATATCTCGTTGGC+TGG - Chr4:54542101-54542120 None:intergenic 55.0%
GATGCCTATATTCGACCGGG+AGG + Chr4:54541910-54541929 MsG0480021160.01.T01:CDS 55.0%
GCTTCTGCAACATCGGAGTC+GGG + Chr4:54538485-54538504 MsG0480021160.01.T01:intron 55.0%
TCAGGCTGCAGTGGAAGAAG+AGG + Chr4:54541296-54541315 MsG0480021160.01.T01:CDS 55.0%
TGAGAGAGTTCAGGCTGCAG+TGG + Chr4:54541287-54541306 MsG0480021160.01.T01:CDS 55.0%
TTCAAAATGGGGCCTCTCGG+CGG - Chr4:54538570-54538589 MsG0480021159.01.T01:CDS 55.0%
TTGCAACTGCCGAGGAATCC+AGG + Chr4:54541367-54541386 MsG0480021160.01.T01:CDS 55.0%
! CATATCTCGTTGGCTGGAGG+AGG - Chr4:54542095-54542114 None:intergenic 55.0%
! CTTGACTTTGGTGGTTCGGG+TGG - Chr4:54538982-54539001 None:intergenic 55.0%
! GAAGTACCCTGCAACCCCAA+AGG - Chr4:54540436-54540455 None:intergenic 55.0%
! GCTCGAGTTGCTCTTGATGG+AGG + Chr4:54540735-54540754 MsG0480021160.01.T01:intron 55.0%
! TTGGGGTTGCAGGGTACTTC+TGG + Chr4:54540436-54540455 MsG0480021160.01.T01:intron 55.0%
!! TGCAGGCCATTTTCTCCCAG+AGG + Chr4:54541248-54541267 MsG0480021160.01.T01:CDS 55.0%
!!! CCAGAACGGTTTTGACTGCG+TGG + Chr4:54537951-54537970 MsG0480021160.01.T01:five_prime_UTR 55.0%
AGCTTACACCGGGGTTTGCC+AGG - Chr4:54542292-54542311 None:intergenic 60.0%
CTGGGTTCGAACCCAGACGA+AGG + Chr4:54540019-54540038 MsG0480021160.01.T01:intron 60.0%
CTTCGTCTGGGTTCGAACCC+AGG - Chr4:54540021-54540040 None:intergenic 60.0%
GACGACAACGACGTCGCAGT+CGG + Chr4:54537830-54537849 MsG0480021160.01.T01:intron 60.0%
GAGGCTGATGAATGGGGGCT+AGG + Chr4:54539741-54539760 MsG0480021160.01.T01:CDS 60.0%
GCAGTCGCATACCAGGACAC+TGG + Chr4:54542060-54542079 MsG0480021160.01.T01:intron 60.0%
GCCCCCATTCATCAGCCTCT+CGG - Chr4:54539740-54539759 None:intergenic 60.0%
TGGGGGCTAGGGAATTGCCA+AGG + Chr4:54539753-54539772 MsG0480021160.01.T01:CDS 60.0%
TTTCATGTCCACCCCTCCGG+CGG - Chr4:54537911-54537930 MsG0480021159.01.T01:intron 60.0%
! ATCTCGTTGGCTGGAGGAGG+AGG - Chr4:54542092-54542111 None:intergenic 60.0%
! GCCCATATCTCGTTGGCTGG+AGG - Chr4:54542098-54542117 None:intergenic 60.0%
! GGCGGAGGTGCAGACTGAAA+AGG - Chr4:54538916-54538935 None:intergenic 60.0%
!! AAAGGTTGTGGTGGTGGCGG+AGG - Chr4:54538931-54538950 None:intergenic 60.0%
GGAGGCTGAACCCAGTGTCC+TGG - Chr4:54542074-54542093 None:intergenic 65.0%
GTGAATGCATCGCCGCCGGA+GGG + Chr4:54537896-54537915 MsG0480021160.01.T01:five_prime_UTR 65.0%
TGAATGCATCGCCGCCGGAG+GGG + Chr4:54537897-54537916 MsG0480021160.01.T01:five_prime_UTR 65.0%
CGTGAATGCATCGCCGCCGG+AGG + Chr4:54537895-54537914 MsG0480021160.01.T01:five_prime_UTR 70.0%
ATGCATCGCCGCCGGAGGGG+TGG + Chr4:54537900-54537919 MsG0480021160.01.T01:five_prime_UTR 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 54537578 54542548 54537578 ID=MsG0480021160.01;Name=MsG0480021160.01
Chr4 mRNA 54537578 54542548 54537578 ID=MsG0480021160.01.T01;Parent=MsG0480021160.01;Name=MsG0480021160.01.T01;_AED=0.29;_eAED=0.32;_QI=358|0.77|0.8|1|0.55|0.4|10|406|444
Chr4 exon 54537578 54537807 54537578 ID=MsG0480021160.01.T01:exon:8854;Parent=MsG0480021160.01.T01
Chr4 exon 54537887 54537981 54537887 ID=MsG0480021160.01.T01:exon:8855;Parent=MsG0480021160.01.T01
Chr4 five_prime_UTR 54537578 54537807 54537578 ID=MsG0480021160.01.T01:five_prime_utr;Parent=MsG0480021160.01.T01
Chr4 five_prime_UTR 54537887 54537981 54537887 ID=MsG0480021160.01.T01:five_prime_utr;Parent=MsG0480021160.01.T01
Chr4 five_prime_UTR 54538868 54538900 54538868 ID=MsG0480021160.01.T01:five_prime_utr;Parent=MsG0480021160.01.T01
Chr4 CDS 54538901 54539076 54538901 ID=MsG0480021160.01.T01:cds;Parent=MsG0480021160.01.T01
Chr4 CDS 54539279 54539615 54539279 ID=MsG0480021160.01.T01:cds;Parent=MsG0480021160.01.T01
Chr4 CDS 54539711 54539827 54539711 ID=MsG0480021160.01.T01:cds;Parent=MsG0480021160.01.T01
Chr4 CDS 54540343 54540408 54540343 ID=MsG0480021160.01.T01:cds;Parent=MsG0480021160.01.T01
Chr4 CDS 54540736 54540808 54540736 ID=MsG0480021160.01.T01:cds;Parent=MsG0480021160.01.T01
Chr4 CDS 54541193 54541638 54541193 ID=MsG0480021160.01.T01:cds;Parent=MsG0480021160.01.T01
Chr4 CDS 54541895 54541935 54541895 ID=MsG0480021160.01.T01:cds;Parent=MsG0480021160.01.T01
Chr4 CDS 54542064 54542142 54542064 ID=MsG0480021160.01.T01:cds;Parent=MsG0480021160.01.T01
Chr4 three_prime_UTR 54542143 54542548 54542143 ID=MsG0480021160.01.T01:three_prime_utr;Parent=MsG0480021160.01.T01
Chr4 mRNA 54537630 54542548 54537630 ID=MsG0480021160.01.T02;Parent=MsG0480021160.01;Name=MsG0480021160.01.T02;_AED=0.29;_eAED=0.32;_QI=385|0.75|0.77|1|0.62|0.44|9|406|444
Chr4 exon 54537630 54537981 54537630 ID=MsG0480021160.01.T02:exon:8864;Parent=MsG0480021160.01.T02
Chr4 five_prime_UTR 54537630 54537981 54537630 ID=MsG0480021160.01.T02:five_prime_utr;Parent=MsG0480021160.01.T02
Chr4 five_prime_UTR 54538868 54538900 54538868 ID=MsG0480021160.01.T02:five_prime_utr;Parent=MsG0480021160.01.T02
Chr4 CDS 54538901 54539076 54538901 ID=MsG0480021160.01.T02:cds;Parent=MsG0480021160.01.T02
Chr4 CDS 54539279 54539615 54539279 ID=MsG0480021160.01.T02:cds;Parent=MsG0480021160.01.T02
Chr4 CDS 54539711 54539827 54539711 ID=MsG0480021160.01.T02:cds;Parent=MsG0480021160.01.T02
Chr4 CDS 54540343 54540408 54540343 ID=MsG0480021160.01.T02:cds;Parent=MsG0480021160.01.T02
Chr4 CDS 54540736 54540808 54540736 ID=MsG0480021160.01.T02:cds;Parent=MsG0480021160.01.T02
Chr4 CDS 54541193 54541638 54541193 ID=MsG0480021160.01.T02:cds;Parent=MsG0480021160.01.T02
Chr4 CDS 54541895 54541935 54541895 ID=MsG0480021160.01.T02:cds;Parent=MsG0480021160.01.T02
Chr4 CDS 54542064 54542142 54542064 ID=MsG0480021160.01.T02:cds;Parent=MsG0480021160.01.T02
Chr4 three_prime_UTR 54542143 54542548 54542143 ID=MsG0480021160.01.T02:three_prime_utr;Parent=MsG0480021160.01.T02
Chr4 mRNA 54538854 54542548 54538854 ID=MsG0480021160.01.T03;Parent=MsG0480021160.01;Name=MsG0480021160.01.T03;_AED=0.32;_eAED=0.36;_QI=47|0.71|0.75|1|0.71|0.62|8|406|444
Chr4 exon 54538854 54539076 54538854 ID=MsG0480021160.01.T03:exon:8865;Parent=MsG0480021160.01.T03
Chr4 five_prime_UTR 54538854 54538900 54538854 ID=MsG0480021160.01.T03:five_prime_utr;Parent=MsG0480021160.01.T03
Chr4 CDS 54538901 54539076 54538901 ID=MsG0480021160.01.T03:cds;Parent=MsG0480021160.01.T03
Chr4 CDS 54539279 54539615 54539279 ID=MsG0480021160.01.T03:cds;Parent=MsG0480021160.01.T03
Chr4 CDS 54539711 54539827 54539711 ID=MsG0480021160.01.T03:cds;Parent=MsG0480021160.01.T03
Chr4 CDS 54540343 54540408 54540343 ID=MsG0480021160.01.T03:cds;Parent=MsG0480021160.01.T03
Chr4 CDS 54540736 54540808 54540736 ID=MsG0480021160.01.T03:cds;Parent=MsG0480021160.01.T03
Chr4 CDS 54541193 54541638 54541193 ID=MsG0480021160.01.T03:cds;Parent=MsG0480021160.01.T03
Chr4 CDS 54541895 54541935 54541895 ID=MsG0480021160.01.T03:cds;Parent=MsG0480021160.01.T03
Chr4 CDS 54542064 54542142 54542064 ID=MsG0480021160.01.T03:cds;Parent=MsG0480021160.01.T03
Chr4 three_prime_UTR 54542143 54542548 54542143 ID=MsG0480021160.01.T03:three_prime_utr;Parent=MsG0480021160.01.T03
Gene Sequence

>MsG0480021160.01.T03

ATGAATCCAGTTCCTTTTCAGTCTGCACCTCCGCCACCACCACAACCTTTTCTTGAACCTATGCAGCTTCCAATATTACCACCCGAACCACCAAAGTCAAGTTCCTTTTGGGAGACCAGAAATGTCTGTGATCGGTCCAGGGAATTGCAAGATACTCTAAATCTTGCAAAGGGAATGCAAAAGGAACTAGAGATGTTGAAGATGATCAAAGAGAGTAAAGGGCCTTTAGAAGAAACTCATGGCTCAAACGAAAATCTTTTAAGTTTTATGAAGTGTCTAGAGGACAGAGGGGTTAGTATAGAAACCCAAGAAGCAATGGCTGTTGAAGAAGCAAATTCTTTAATGTTAAAACTAAAAGCTCAGCTGGAGCCATTCAGATATGTTGCGGATGAAGCAAGTCCATGGGAAGAGAAATCAGCAGTGGCCAGGTTTACAAATAAAGTGCATAAGTCTAAACGGAATAAACTCTGGAGGAAGAAAAAAAGGAAGCGTATTGCGGAAATGCTGGCAAAGGAGCACGAGCAATTTGATCAAATTGACCGAGAGGCTGATGAATGGGGGCTAGGGAATTGCCAAGGAAATTGCAAGTATCAAGGTATTGAAATTTTGCAATCTAAGCCTACATTTATAGTAAAAAAGATGAACGAAATTGCAGAGCTTAAAGTCAAAGAAGAGAAGAAGAAATTAGAGTCTGAGCTCGAGTTGCTCTTGATGGAGGAGAAACTTAAAGAATTACGCTCCATAAGGATACAAAAGTTGAAAAAACAAGTTTACAATTTAAGTATGCAGAAATTTGTAATATTCATATATGTAAGTTTCATATATGCAGGCCATTTTCTCCCAGAGGAAGATGATAAATTTTTTGAGAGAGTTCAGGCTGCAGTGGAAGAAGAGGAGCGTGAAGCTTTGGCTGCAGCTGAAACAGATGCTGCTAAAGATGCAATTGCAACTGCCGAGGAATCCAGGAAAGCCATGCAGAACCAAGGGAAACTTTCAAAAGAAAGCAATGATGAAAGTCAGATTAAGGAGAACAACGGGCAAATAGTCCATAGTGTAACCGAAGAGGGATTAGATGCAACTGATGAGAAGAAATCTAGTAACATAGCATCTGAAGGACAGAACTATGGAGGAGCTTATGATCCTTTGGCCAATTTACCGATTGAGTTCTATCATTATTATCATGGAAGCAACAATGACATGGGCACATTGATCGAGGTTAGAAGAGGATGGGATGCCTATATTCGACCGGGAGGAAGTCGCATACCAGGACACTGGGTTCAGCCTCCTCCTCCAGCCAACGAGATATGGGCATCTTACTTGGTGAGGTCTGAATGA

>MsG0480021160.01.T01

ATGAATCCAGTTCCTTTTCAGTCTGCACCTCCGCCACCACCACAACCTTTTCTTGAACCTATGCAGCTTCCAATATTACCACCCGAACCACCAAAGTCAAGTTCCTTTTGGGAGACCAGAAATGTCTGTGATCGGTCCAGGGAATTGCAAGATACTCTAAATCTTGCAAAGGGAATGCAAAAGGAACTAGAGATGTTGAAGATGATCAAAGAGAGTAAAGGGCCTTTAGAAGAAACTCATGGCTCAAACGAAAATCTTTTAAGTTTTATGAAGTGTCTAGAGGACAGAGGGGTTAGTATAGAAACCCAAGAAGCAATGGCTGTTGAAGAAGCAAATTCTTTAATGTTAAAACTAAAAGCTCAGCTGGAGCCATTCAGATATGTTGCGGATGAAGCAAGTCCATGGGAAGAGAAATCAGCAGTGGCCAGGTTTACAAATAAAGTGCATAAGTCTAAACGGAATAAACTCTGGAGGAAGAAAAAAAGGAAGCGTATTGCGGAAATGCTGGCAAAGGAGCACGAGCAATTTGATCAAATTGACCGAGAGGCTGATGAATGGGGGCTAGGGAATTGCCAAGGAAATTGCAAGTATCAAGGTATTGAAATTTTGCAATCTAAGCCTACATTTATAGTAAAAAAGATGAACGAAATTGCAGAGCTTAAAGTCAAAGAAGAGAAGAAGAAATTAGAGTCTGAGCTCGAGTTGCTCTTGATGGAGGAGAAACTTAAAGAATTACGCTCCATAAGGATACAAAAGTTGAAAAAACAAGTTTACAATTTAAGTATGCAGAAATTTGTAATATTCATATATGTAAGTTTCATATATGCAGGCCATTTTCTCCCAGAGGAAGATGATAAATTTTTTGAGAGAGTTCAGGCTGCAGTGGAAGAAGAGGAGCGTGAAGCTTTGGCTGCAGCTGAAACAGATGCTGCTAAAGATGCAATTGCAACTGCCGAGGAATCCAGGAAAGCCATGCAGAACCAAGGGAAACTTTCAAAAGAAAGCAATGATGAAAGTCAGATTAAGGAGAACAACGGGCAAATAGTCCATAGTGTAACCGAAGAGGGATTAGATGCAACTGATGAGAAGAAATCTAGTAACATAGCATCTGAAGGACAGAACTATGGAGGAGCTTATGATCCTTTGGCCAATTTACCGATTGAGTTCTATCATTATTATCATGGAAGCAACAATGACATGGGCACATTGATCGAGGTTAGAAGAGGATGGGATGCCTATATTCGACCGGGAGGAAGTCGCATACCAGGACACTGGGTTCAGCCTCCTCCTCCAGCCAACGAGATATGGGCATCTTACTTGGTGAGGTCTGAATGA

>MsG0480021160.01.T02

ATGAATCCAGTTCCTTTTCAGTCTGCACCTCCGCCACCACCACAACCTTTTCTTGAACCTATGCAGCTTCCAATATTACCACCCGAACCACCAAAGTCAAGTTCCTTTTGGGAGACCAGAAATGTCTGTGATCGGTCCAGGGAATTGCAAGATACTCTAAATCTTGCAAAGGGAATGCAAAAGGAACTAGAGATGTTGAAGATGATCAAAGAGAGTAAAGGGCCTTTAGAAGAAACTCATGGCTCAAACGAAAATCTTTTAAGTTTTATGAAGTGTCTAGAGGACAGAGGGGTTAGTATAGAAACCCAAGAAGCAATGGCTGTTGAAGAAGCAAATTCTTTAATGTTAAAACTAAAAGCTCAGCTGGAGCCATTCAGATATGTTGCGGATGAAGCAAGTCCATGGGAAGAGAAATCAGCAGTGGCCAGGTTTACAAATAAAGTGCATAAGTCTAAACGGAATAAACTCTGGAGGAAGAAAAAAAGGAAGCGTATTGCGGAAATGCTGGCAAAGGAGCACGAGCAATTTGATCAAATTGACCGAGAGGCTGATGAATGGGGGCTAGGGAATTGCCAAGGAAATTGCAAGTATCAAGGTATTGAAATTTTGCAATCTAAGCCTACATTTATAGTAAAAAAGATGAACGAAATTGCAGAGCTTAAAGTCAAAGAAGAGAAGAAGAAATTAGAGTCTGAGCTCGAGTTGCTCTTGATGGAGGAGAAACTTAAAGAATTACGCTCCATAAGGATACAAAAGTTGAAAAAACAAGTTTACAATTTAAGTATGCAGAAATTTGTAATATTCATATATGTAAGTTTCATATATGCAGGCCATTTTCTCCCAGAGGAAGATGATAAATTTTTTGAGAGAGTTCAGGCTGCAGTGGAAGAAGAGGAGCGTGAAGCTTTGGCTGCAGCTGAAACAGATGCTGCTAAAGATGCAATTGCAACTGCCGAGGAATCCAGGAAAGCCATGCAGAACCAAGGGAAACTTTCAAAAGAAAGCAATGATGAAAGTCAGATTAAGGAGAACAACGGGCAAATAGTCCATAGTGTAACCGAAGAGGGATTAGATGCAACTGATGAGAAGAAATCTAGTAACATAGCATCTGAAGGACAGAACTATGGAGGAGCTTATGATCCTTTGGCCAATTTACCGATTGAGTTCTATCATTATTATCATGGAAGCAACAATGACATGGGCACATTGATCGAGGTTAGAAGAGGATGGGATGCCTATATTCGACCGGGAGGAAGTCGCATACCAGGACACTGGGTTCAGCCTCCTCCTCCAGCCAACGAGATATGGGCATCTTACTTGGTGAGGTCTGAATGA
Protein sequence

>MsG0480021160.01.T03

MNPVPFQSAPPPPPQPFLEPMQLPILPPEPPKSSSFWETRNVCDRSRELQDTLNLAKGMQKELEMLKMIKESKGPLEETHGSNENLLSFMKCLEDRGVSIETQEAMAVEEANSLMLKLKAQLEPFRYVADEASPWEEKSAVARFTNKVHKSKRNKLWRKKKRKRIAEMLAKEHEQFDQIDREADEWGLGNCQGNCKYQGIEILQSKPTFIVKKMNEIAELKVKEEKKKLESELELLLMEEKLKELRSIRIQKLKKQVYNLSMQKFVIFIYVSFIYAGHFLPEEDDKFFERVQAAVEEEEREALAAAETDAAKDAIATAEESRKAMQNQGKLSKESNDESQIKENNGQIVHSVTEEGLDATDEKKSSNIASEGQNYGGAYDPLANLPIEFYHYYHGSNNDMGTLIEVRRGWDAYIRPGGSRIPGHWVQPPPPANEIWASYLVRSE*

>MsG0480021160.01.T01

MNPVPFQSAPPPPPQPFLEPMQLPILPPEPPKSSSFWETRNVCDRSRELQDTLNLAKGMQKELEMLKMIKESKGPLEETHGSNENLLSFMKCLEDRGVSIETQEAMAVEEANSLMLKLKAQLEPFRYVADEASPWEEKSAVARFTNKVHKSKRNKLWRKKKRKRIAEMLAKEHEQFDQIDREADEWGLGNCQGNCKYQGIEILQSKPTFIVKKMNEIAELKVKEEKKKLESELELLLMEEKLKELRSIRIQKLKKQVYNLSMQKFVIFIYVSFIYAGHFLPEEDDKFFERVQAAVEEEEREALAAAETDAAKDAIATAEESRKAMQNQGKLSKESNDESQIKENNGQIVHSVTEEGLDATDEKKSSNIASEGQNYGGAYDPLANLPIEFYHYYHGSNNDMGTLIEVRRGWDAYIRPGGSRIPGHWVQPPPPANEIWASYLVRSE*

>MsG0480021160.01.T02

MNPVPFQSAPPPPPQPFLEPMQLPILPPEPPKSSSFWETRNVCDRSRELQDTLNLAKGMQKELEMLKMIKESKGPLEETHGSNENLLSFMKCLEDRGVSIETQEAMAVEEANSLMLKLKAQLEPFRYVADEASPWEEKSAVARFTNKVHKSKRNKLWRKKKRKRIAEMLAKEHEQFDQIDREADEWGLGNCQGNCKYQGIEILQSKPTFIVKKMNEIAELKVKEEKKKLESELELLLMEEKLKELRSIRIQKLKKQVYNLSMQKFVIFIYVSFIYAGHFLPEEDDKFFERVQAAVEEEEREALAAAETDAAKDAIATAEESRKAMQNQGKLSKESNDESQIKENNGQIVHSVTEEGLDATDEKKSSNIASEGQNYGGAYDPLANLPIEFYHYYHGSNNDMGTLIEVRRGWDAYIRPGGSRIPGHWVQPPPPANEIWASYLVRSE*