AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480020539.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020539.01.T01 MTR_4g053250 94.269 506 12 2 1 506 1 489 0.0 979
MsG0480020539.01.T01 MTR_2g086420 63.724 521 150 9 1 506 1 497 0.0 612
MsG0480020539.01.T01 MTR_2g086420 63.532 521 150 9 1 506 1 496 0.0 610
MsG0480020539.01.T01 MTR_8g040120 51.744 344 144 5 152 478 128 466 8.56e-111 337
MsG0480020539.01.T01 MTR_7g089800 47.606 376 157 6 119 478 72 423 1.45e-109 332
MsG0480020539.01.T01 MTR_7g089800 47.606 376 157 6 119 478 101 452 3.01e-109 332
MsG0480020539.01.T01 MTR_7g092750 52.134 328 124 6 174 478 45 362 1.29e-108 328
MsG0480020539.01.T01 MTR_7g092750 52.134 328 124 6 174 478 146 463 6.12e-108 329
MsG0480020539.01.T01 MTR_3g087940 44.904 363 159 5 126 478 30 361 1.04e-102 312
MsG0480020539.01.T01 MTR_5g054900 52.448 286 123 2 206 478 68 353 2.16e-101 309
MsG0480020539.01.T01 MTR_5g054900 52.265 287 124 2 205 478 148 434 2.16e-100 309
MsG0480020539.01.T01 MTR_5g054900 51.568 287 122 3 205 478 67 349 1.15e-97 299
MsG0480020539.01.T01 MTR_5g054900 51.568 287 122 3 205 478 178 460 2.51e-96 299
MsG0480020539.01.T01 MTR_7g092750 48.476 328 110 7 174 478 146 437 1.54e-94 294
MsG0480020539.01.T01 MTR_1g111310 50.523 287 128 2 206 478 421 707 9.70e-93 297
MsG0480020539.01.T01 MTR_1g111310 50.549 273 129 2 206 472 54 326 2.02e-82 270
MsG0480020539.01.T01 MTR_8g091650 49.117 283 133 3 206 478 2 283 4.37e-85 264
MsG0480020539.01.T01 MTR_8g091650 48.252 286 137 3 203 478 72 356 2.57e-84 265
MsG0480020539.01.T01 MTR_8g091650 49.286 280 131 3 209 478 114 392 9.80e-84 265
MsG0480020539.01.T01 MTR_5g060950 45.141 319 156 5 167 475 37 346 1.11e-82 261
MsG0480020539.01.T01 MTR_0126s0080 40.187 428 171 10 36 431 85 459 1.89e-82 264
MsG0480020539.01.T01 MTR_3g073560 44.615 325 156 5 167 480 38 349 1.19e-79 260
MsG0480020539.01.T01 MTR_3g044820 52.727 165 63 3 205 354 44 208 5.53e-57 189
MsG0480020539.01.T01 MTR_1g090370 33.537 164 92 4 298 460 70 217 5.56e-18 83.6
MsG0480020539.01.T01 MTR_1g111320 70.370 54 16 0 206 259 146 199 1.71e-16 79.0
MsG0480020539.01.T01 MTR_8g094690 25.316 237 138 5 267 465 12 247 9.67e-16 77.8
MsG0480020539.01.T01 MTR_7g068860 22.831 219 149 4 266 468 5 219 5.87e-12 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480020539.01.T01 AT1G08320 55.556 513 189 11 1 506 1 481 0.0 525
MsG0480020539.01.T01 AT1G08320 55.556 513 189 11 1 506 1 481 0.0 525
MsG0480020539.01.T01 AT1G08320 55.556 513 189 11 1 506 1 481 0.0 525
MsG0480020539.01.T01 AT1G08320 67.169 332 95 4 178 506 37 357 2.85e-159 456
MsG0480020539.01.T01 AT1G08320 67.169 332 95 4 178 506 37 357 2.85e-159 456
MsG0480020539.01.T01 AT5G06950 55.000 300 117 4 194 478 34 330 1.58e-107 323
MsG0480020539.01.T01 AT5G06950 55.000 300 117 4 194 478 34 330 1.58e-107 323
MsG0480020539.01.T01 AT5G06950 55.000 300 117 4 194 478 34 330 1.58e-107 323
MsG0480020539.01.T01 AT5G06950 55.000 300 117 4 194 478 34 330 1.58e-107 323
MsG0480020539.01.T01 AT5G06950 55.000 300 117 4 194 478 34 330 1.58e-107 323
MsG0480020539.01.T01 AT3G12250 53.872 297 125 2 194 478 7 303 5.37e-107 321
MsG0480020539.01.T01 AT3G12250 53.872 297 125 2 194 478 34 330 6.40e-107 322
MsG0480020539.01.T01 AT3G12250 53.872 297 125 2 194 478 34 330 6.40e-107 322
MsG0480020539.01.T01 AT3G12250 53.872 297 125 2 194 478 34 330 6.40e-107 322
MsG0480020539.01.T01 AT3G12250 53.872 297 125 2 194 478 34 330 6.40e-107 322
MsG0480020539.01.T01 AT3G12250 53.872 297 125 2 194 478 28 324 1.30e-106 321
MsG0480020539.01.T01 AT5G06839 44.084 431 172 8 74 479 73 459 6.79e-106 324
MsG0480020539.01.T01 AT3G12250 54.000 300 120 3 194 478 59 355 1.31e-105 320
MsG0480020539.01.T01 AT5G06839 47.059 391 143 8 129 479 50 416 2.11e-105 321
MsG0480020539.01.T01 AT5G06839 46.939 392 143 9 129 479 50 417 5.91e-104 318
MsG0480020539.01.T01 AT5G06960 53.497 286 121 2 205 478 45 330 1.01e-98 301
MsG0480020539.01.T01 AT5G06960 53.497 286 121 2 205 478 45 330 1.01e-98 301
MsG0480020539.01.T01 AT5G06960 53.497 286 121 2 205 478 25 310 1.29e-98 300
MsG0480020539.01.T01 AT1G22070 53.793 290 120 4 203 479 95 383 1.59e-95 295
MsG0480020539.01.T01 AT1G68640 54.296 291 113 4 205 478 165 452 3.09e-94 294
MsG0480020539.01.T01 AT5G10030 51.429 280 126 2 209 478 83 362 4.24e-93 288
MsG0480020539.01.T01 AT5G10030 51.429 280 126 2 209 478 83 362 4.24e-93 288
MsG0480020539.01.T01 AT5G10030 51.429 280 126 2 209 478 83 362 4.24e-93 288
MsG0480020539.01.T01 AT5G10030 51.429 280 126 2 209 478 83 362 4.24e-93 288
MsG0480020539.01.T01 AT5G10030 51.429 280 126 2 209 478 83 362 4.24e-93 288
MsG0480020539.01.T01 AT1G77920 49.045 314 142 5 168 478 68 366 2.17e-92 286
MsG0480020539.01.T01 AT5G65210 50.714 280 128 2 209 478 17 296 3.56e-91 280
MsG0480020539.01.T01 AT5G65210 50.714 280 128 2 209 478 87 366 1.55e-90 281
MsG0480020539.01.T01 AT5G65210 50.714 280 128 2 209 478 87 366 1.55e-90 281
MsG0480020539.01.T01 AT5G65210 50.714 280 128 2 209 478 87 366 1.55e-90 281
MsG0480020539.01.T01 AT5G65210 50.714 280 128 2 209 478 87 366 1.55e-90 281
MsG0480020539.01.T01 AT5G65210 50.714 280 128 2 209 478 87 366 1.55e-90 281
MsG0480020539.01.T01 AT5G65210 50.714 280 128 2 209 478 87 366 1.55e-90 281
MsG0480020539.01.T01 AT3G14880 27.586 203 126 5 277 460 17 217 2.25e-15 76.3
MsG0480020539.01.T01 AT3G14880 26.667 210 126 6 277 460 17 224 5.90e-14 72.0
MsG0480020539.01.T01 AT1G58330 26.966 178 117 4 304 468 46 223 2.13e-12 67.0

Find 130 sgRNAs with CRISPR-Local

Find 464 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACTTGCAAAAGCAGCTTTA+AGG 0.168197 4:-43045043 None:intergenic
GCAAGATGTTTCATTGTTAT+TGG 0.193670 4:+43044081 MsG0480020539.01.T01:CDS
AGAATATATATTTATTTCTT+AGG 0.209607 4:+43045109 MsG0480020539.01.T01:three_prime_UTR
TTCGAGCCCTTAGCTCTCTT+TGG 0.224036 4:+43044121 MsG0480020539.01.T01:CDS
AGCCAAAGAATTGGAGAAAT+TGG 0.227335 4:+43035831 MsG0480020539.01.T01:CDS
GCCATTTACCTGTGTTTCTT+TGG 0.229220 4:-43035600 None:intergenic
AACCAATTTCTCCAATTCTT+TGG 0.257495 4:-43035833 None:intergenic
TTCACCTTATTAAAGGCATT+TGG 0.259017 4:+43041575 MsG0480020539.01.T01:CDS
TATTTAATAGGGACTATTCT+TGG 0.260147 4:+43039337 MsG0480020539.01.T01:intron
CACTTGAAATGTTTCCTTCA+TGG 0.278419 4:+43036545 MsG0480020539.01.T01:CDS
ATCAGGTTTCTTTCTATAGA+AGG 0.285559 4:+43035414 MsG0480020539.01.T01:five_prime_UTR
GGAGCTTAGGGCGGGGCTGC+AGG 0.299476 4:+43041450 MsG0480020539.01.T01:CDS
CTATTCTTGGGTTGTGGTGG+TGG 0.301108 4:+43039350 MsG0480020539.01.T01:CDS
ACACCCCATAAGAGAGAAAA+TGG 0.312762 4:+43035454 MsG0480020539.01.T01:five_prime_UTR
GCCTCGAGTATTTACATCTT+AGG 0.316370 4:+43035356 None:intergenic
GAAAAGCCGTCTAAGGAAAA+AGG 0.335701 4:+43038689 MsG0480020539.01.T01:CDS
CATCTATTTGTTGCTGCGCT+AGG 0.338242 4:-43041838 None:intergenic
TCAAGTCAACATGTCCCTTA+TGG 0.339592 4:+43035873 MsG0480020539.01.T01:CDS
GTCCCTTATGGAGTTCTTCA+TGG 0.344846 4:+43035885 MsG0480020539.01.T01:CDS
GGCGGGGCTGCAGGCATCGT+TGG 0.347658 4:+43041459 MsG0480020539.01.T01:CDS
TTGAAGGTCTTGTTCGAGAT+TGG 0.359984 4:-43039165 None:intergenic
CTTGAAATGATGAAGTATTC+AGG 0.362662 4:-43041871 None:intergenic
TCACCTTATTAAAGGCATTT+GGG 0.365420 4:+43041576 MsG0480020539.01.T01:CDS
TCGAGCCCTTAGCTCTCTTT+GGG 0.367721 4:+43044122 MsG0480020539.01.T01:CDS
GGAGGAGAAAGTACTGATTC+AGG 0.370655 4:+43037279 MsG0480020539.01.T01:CDS
GGTGTTTGTTGAAATCTAAT+TGG 0.377286 4:-43036568 None:intergenic
AGCTAGAGTCAAGTAGATTA+AGG 0.378396 4:+43039138 MsG0480020539.01.T01:CDS
ATTGTTATTGGAGAGTATTA+TGG 0.381252 4:+43044093 MsG0480020539.01.T01:CDS
ATCTATTTGTTGCTGCGCTA+GGG 0.382547 4:-43041837 None:intergenic
GCGGGGCTGCAGGCATCGTT+GGG 0.388454 4:+43041460 MsG0480020539.01.T01:CDS
CTAGCGCAGCAACAAATAGA+TGG 0.389368 4:+43041839 MsG0480020539.01.T01:CDS
CTGCTGAGAGACCCTTCATT+TGG 0.391421 4:+43041605 MsG0480020539.01.T01:CDS
AACGACACATGGCGGAGCTT+AGG 0.392881 4:+43041437 MsG0480020539.01.T01:CDS
GAACAGGCAATTGTTCTTCA+AGG 0.397560 4:+43036118 MsG0480020539.01.T01:CDS
CTTTGGGCTGCTTTAGAAGA+AGG 0.400460 4:+43045071 MsG0480020539.01.T01:three_prime_UTR
TTGAAGAATGAATACATTAA+GGG 0.401506 4:-43035927 None:intergenic
AAGCCCAAATGCCTTTAATA+AGG 0.402887 4:-43041579 None:intergenic
CATGCAAAGTTATGATCTAT+AGG 0.403365 4:-43035801 None:intergenic
CCTGGGAGCGTGCTCTTTGA+AGG 0.404497 4:-43039181 None:intergenic
TGTTGTTGTCTTAGGAATCA+AGG 0.409085 4:+43036070 MsG0480020539.01.T01:intron
TAGGGACTATTCTTGGGTTG+TGG 0.414870 4:+43039344 MsG0480020539.01.T01:intron
ATTTAATAGGGACTATTCTT+GGG 0.415642 4:+43039338 MsG0480020539.01.T01:intron
GAAATTGGTTTGTCTGAGTC+TGG 0.415790 4:+43035846 MsG0480020539.01.T01:CDS
CTGCAAAGAAAAGCCGTCTA+AGG 0.419091 4:+43038682 MsG0480020539.01.T01:CDS
TCAACAGACACTGAGACGTT+TGG 0.430811 4:+43038644 MsG0480020539.01.T01:CDS
ACCGATGATGGCTTAAGAAC+AGG 0.433139 4:+43037417 MsG0480020539.01.T01:CDS
ACGACACATGGCGGAGCTTA+GGG 0.435245 4:+43041438 MsG0480020539.01.T01:CDS
ACATAGGGAGGTTCAAAATC+AGG 0.436312 4:+43037258 MsG0480020539.01.T01:intron
TGCATGGCTAGCCAAAGAAT+TGG 0.437865 4:+43035822 MsG0480020539.01.T01:exon
GCAGCAGCTTCAACAGCAAC+AGG 0.443356 4:+43037386 MsG0480020539.01.T01:CDS
GCCGGAGGGCCTGTCGTTGA+CGG 0.453170 4:+43041953 MsG0480020539.01.T01:CDS
GCAACAAATAGATGGGATAA+TGG 0.454978 4:+43041847 MsG0480020539.01.T01:CDS
ATTCCATGAAGAACTCCATA+AGG 0.455812 4:-43035888 None:intergenic
GTAGATGTTGACACAACAAT+TGG 0.464222 4:+43041811 MsG0480020539.01.T01:intron
TTATTGTAAATAATGAGATT+CGG 0.464634 4:+43045176 MsG0480020539.01.T01:three_prime_UTR
TTTGCAATTCTGTGGTTGCT+TGG 0.468162 4:-43044927 None:intergenic
AGATGGTTGCCGCCATGGCC+AGG 0.469755 4:+43041984 MsG0480020539.01.T01:CDS
TAAGGGACATGTTGACTTGA+AGG 0.470369 4:-43035870 None:intergenic
GCAGAAGAAGCTCTCTCTAA+AGG 0.470527 4:+43041893 MsG0480020539.01.T01:CDS
AACGACAGGCCCTCCGGCGA+TGG 0.470647 4:-43041948 None:intergenic
AGCCAAATCACCTCATGAAA+AGG 0.477424 4:+43037464 MsG0480020539.01.T01:CDS
AATTGTAGGCTGATAATTTG+AGG 0.478296 4:+43044010 MsG0480020539.01.T01:intron
TGAAATCTAATTGGCCATGA+AGG 0.480352 4:-43036559 None:intergenic
AAACAAGTGACTAATCAATC+AGG 0.480362 4:+43035397 MsG0480020539.01.T01:five_prime_UTR
AGATCATAACTTTGCATGCA+TGG 0.485458 4:+43035806 MsG0480020539.01.T01:exon
GGACTATTCTTGGGTTGTGG+TGG 0.490197 4:+43039347 MsG0480020539.01.T01:CDS
GCCGTCAACGACAGGCCCTC+CGG 0.490375 4:-43041954 None:intergenic
AACATTTCAAGTGTAGCTGC+TGG 0.491575 4:-43036535 None:intergenic
GCAACAGATGGTTGCCGCCA+TGG 0.491703 4:+43041979 MsG0480020539.01.T01:CDS
CAAATGAAGGGTCTCTCAGC+AGG 0.492161 4:-43041604 None:intergenic
TAACAGCCACCTCCTTCAAT+CGG 0.494670 4:-43041540 None:intergenic
TGTTGCATGCCGTCAACGAC+AGG 0.495188 4:-43041962 None:intergenic
GTTGTTGTCTTAGGAATCAA+GGG 0.496590 4:+43036071 MsG0480020539.01.T01:intron
CTTCTATAACTTGTCCACAT+AGG 0.501513 4:+43035568 MsG0480020539.01.T01:five_prime_UTR
CAGGAGACAGCAACCGATGA+TGG 0.503452 4:+43037405 MsG0480020539.01.T01:CDS
GAAACCACCTATCCAAATGA+AGG 0.507472 4:-43041617 None:intergenic
GTGAGAGAAGCTACAACTCT+TGG 0.508120 4:-43036589 None:intergenic
CACATGGCGGAGCTTAGGGC+GGG 0.511735 4:+43041442 MsG0480020539.01.T01:CDS
AGACCCTTCATTTGGATAGG+TGG 0.525909 4:+43041613 MsG0480020539.01.T01:CDS
CCAACTATGTCGAATATTGA+CGG 0.527349 4:+43044047 MsG0480020539.01.T01:CDS
GGCTGCTTTAGAAGAAGGAA+AGG 0.534369 4:+43045076 MsG0480020539.01.T01:three_prime_UTR
ATCAAGATAAGAAATGATGA+AGG 0.535918 4:+43036142 MsG0480020539.01.T01:CDS
ACATGGCGGAGCTTAGGGCG+GGG 0.538791 4:+43041443 MsG0480020539.01.T01:CDS
TTTGGAAATAGTAACCTATG+TGG 0.539825 4:-43035582 None:intergenic
AATATTGACGGTTCGTCAAG+CGG 0.542904 4:+43044059 MsG0480020539.01.T01:CDS
ACATAAGGAATGGTCAAAGA+TGG 0.545520 4:-43036616 None:intergenic
GCCTGTTCTTAAGCCATCAT+CGG 0.547177 4:-43037418 None:intergenic
GCTGCTTTAGAAGAAGGAAA+GGG 0.548246 4:+43045077 MsG0480020539.01.T01:three_prime_UTR
AGCAACCACAGAATTGCAAA+TGG 0.553522 4:+43044930 MsG0480020539.01.T01:CDS
TTGAAGCCCAAAGAGAGCTA+AGG 0.553832 4:-43044128 None:intergenic
GAGAGACCCTTCATTTGGAT+AGG 0.567532 4:+43041610 MsG0480020539.01.T01:CDS
GAGAATGTTTACATAAGGAA+TGG 0.568455 4:-43036626 None:intergenic
CCTTCAAAGAGCACGCTCCC+AGG 0.569093 4:+43039181 MsG0480020539.01.T01:CDS
TCTATTTGTTGCTGCGCTAG+GGG 0.569490 4:-43041836 None:intergenic
ATTGTTGACACCATCGCCGG+AGG 0.572201 4:+43041938 MsG0480020539.01.T01:CDS
CAAGTTATAGAAGAGAAGAG+AGG 0.573453 4:-43035558 None:intergenic
CCGTCAATATTCGACATAGT+TGG 0.573495 4:-43044047 None:intergenic
TGAAGCCCAAAGAGAGCTAA+GGG 0.583591 4:-43044127 None:intergenic
AAGACTTGACTATCTTCTTG+TGG 0.585644 4:+43035496 MsG0480020539.01.T01:five_prime_UTR
AGAAAAGACACTGGATCCAA+AGG 0.586690 4:+43038460 MsG0480020539.01.T01:CDS
TAGCGCAGCAACAAATAGAT+GGG 0.590596 4:+43041840 MsG0480020539.01.T01:CDS
TTGTTGACACCATCGCCGGA+GGG 0.591648 4:+43041939 MsG0480020539.01.T01:CDS
GGTATTAGGTCTTACTCTCG+TGG 0.591995 4:-43044153 None:intergenic
CTTGAGAAATGACTATGAGA+AGG 0.592625 4:-43044958 None:intergenic
TACTATTTCCAAAGAAACAC+AGG 0.593186 4:+43035592 MsG0480020539.01.T01:five_prime_UTR
ACACATGGCGGAGCTTAGGG+CGG 0.596440 4:+43041441 MsG0480020539.01.T01:CDS
GCTATTGTTGACACCATCGC+CGG 0.599785 4:+43041935 MsG0480020539.01.T01:CDS
ATACATTAAGGGTGATGTTG+AGG 0.600765 4:-43035916 None:intergenic
TTCCATGAAGAACTCCATAA+GGG 0.601892 4:-43035887 None:intergenic
AAGATTGGAAATCCTGGCCA+TGG 0.602327 4:-43041996 None:intergenic
GAATTGAGAGTGATCGTGGA+CGG 0.616655 4:+43041490 MsG0480020539.01.T01:CDS
TAATGAATTGAGAGTGATCG+TGG 0.617953 4:+43041486 MsG0480020539.01.T01:CDS
AAAGAGAGCTAAGGGCTCGA+AGG 0.622342 4:-43044119 None:intergenic
CGTTGACGGCATGCAACAGA+TGG 0.625586 4:+43041967 MsG0480020539.01.T01:CDS
TTGAACCATTTGCAATTCTG+TGG 0.626591 4:-43044935 None:intergenic
AGAAGAAGATCAACGACACA+TGG 0.630083 4:+43041426 MsG0480020539.01.T01:CDS
TAAATCATAGAGACACAAAG+AGG 0.634511 4:-43045156 None:intergenic
ACATACCGTGATGAGTTCTG+AGG 0.636962 4:-43041644 None:intergenic
AAACCACCTATCCAAATGAA+GGG 0.649407 4:-43041616 None:intergenic
CTGCTTTAGAAGAAGGAAAG+GGG 0.655750 4:+43045078 MsG0480020539.01.T01:three_prime_UTR
CATACCGTGATGAGTTCTGA+GGG 0.662424 4:-43041643 None:intergenic
TTCCACATCAGAAAAGACAC+TGG 0.662441 4:+43038451 MsG0480020539.01.T01:CDS
TGGTGTCAACAATAGCATTG+TGG 0.671299 4:-43041928 None:intergenic
AGGAGCTGCAATGTTTGACA+TGG 0.673799 4:+43041387 MsG0480020539.01.T01:intron
TAGGGAGGTTCAAAATCAGG+AGG 0.685440 4:+43037261 MsG0480020539.01.T01:intron
GGTGGTGGAAATATAAGCCC+TGG 0.689905 4:+43039365 MsG0480020539.01.T01:CDS
TTGACATGGAGTATGCAAGA+TGG 0.703314 4:+43041401 MsG0480020539.01.T01:CDS
CAGACCCTCAGAACTCATCA+CGG 0.712668 4:+43041639 MsG0480020539.01.T01:CDS
AGAAGATCAACGACACATGG+CGG 0.715959 4:+43041429 MsG0480020539.01.T01:CDS
ATTGGAAATCCTGGCCATGG+CGG 0.718776 4:-43041993 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATTTAT+AGG - Chr4:43043151-43043170 None:intergenic 0.0%
!! ATTATTATTATTATTATTTA+TGG + Chr4:43039305-43039324 MsG0480020539.01.T01:intron 0.0%
!! TATATATATATATATTTATA+GGG - Chr4:43043150-43043169 None:intergenic 0.0%
!!! ATAATTTTTTATATTTTTTA+GGG - Chr4:43042892-43042911 None:intergenic 0.0%
!!! ATATATATTTTATATTTTTT+AGG - Chr4:43038553-43038572 None:intergenic 0.0%
!!! ATTAATTATTATTTTTTTTT+GGG + Chr4:43041789-43041808 MsG0480020539.01.T01:intron 0.0%
!!! TATAATTTTTTATATTTTTT+AGG - Chr4:43042893-43042912 None:intergenic 0.0%
!!! TATATATTTTATATTTTTTA+GGG - Chr4:43038552-43038571 None:intergenic 0.0%
!! AAAAATATGAAATAACATTA+TGG - Chr4:43039453-43039472 None:intergenic 10.0%
!! AATTATATATCAATATCATA+AGG - Chr4:43036419-43036438 None:intergenic 10.0%
!! ATAAATAAATAAATAAACCA+TGG - Chr4:43036209-43036228 None:intergenic 10.0%
!! ATAATTCTCTATTATTTATT+TGG + Chr4:43036450-43036469 MsG0480020539.01.T01:intron 10.0%
!! CAAAAAAAATAATTCAAAAT+TGG - Chr4:43040840-43040859 None:intergenic 10.0%
!! CTAATTAATGTTAATAAAAA+AGG - Chr4:43037776-43037795 None:intergenic 10.0%
!! TGATAAAATAAAAATTATAG+AGG - Chr4:43044312-43044331 None:intergenic 10.0%
!!! AAAAAATTCTAATTTTTTTC+AGG - Chr4:43042838-43042857 None:intergenic 10.0%
!!! AGAATATATATTTATTTCTT+AGG + Chr4:43045109-43045128 MsG0480020539.01.T01:three_prime_UTR 10.0%
!!! ATAATGTTATTTCATATTTT+TGG + Chr4:43039452-43039471 MsG0480020539.01.T01:intron 10.0%
!!! ATCATTTAATAGTTTTTTTT+AGG - Chr4:43044204-43044223 None:intergenic 10.0%
!!! ATTAATTTTATTATTGAAAC+AGG + Chr4:43039103-43039122 MsG0480020539.01.T01:intron 10.0%
!!! CTTTTTTATTAACATTAATT+AGG + Chr4:43037774-43037793 MsG0480020539.01.T01:intron 10.0%
!!! TAAAGATTGAAAATTTTATA+GGG + Chr4:43043047-43043066 MsG0480020539.01.T01:intron 10.0%
!!! TAATTAATATTGTCAATTTT+TGG + Chr4:43043472-43043491 MsG0480020539.01.T01:intron 10.0%
!!! TAGTTATTGAAAATTTTATA+GGG - Chr4:43042733-43042752 None:intergenic 10.0%
!!! TATAATATTTTGAATTTTTC+TGG + Chr4:43042963-43042982 MsG0480020539.01.T01:intron 10.0%
!!! TCATTTAATAGTTTTTTTTA+GGG - Chr4:43044203-43044222 None:intergenic 10.0%
!!! TTAATTTTGATATACAATTA+GGG - Chr4:43044435-43044454 None:intergenic 10.0%
!!! TTTAATTTTGATATACAATT+AGG - Chr4:43044436-43044455 None:intergenic 10.0%
!!! TTTGAATTATTTTTTTTGAA+TGG + Chr4:43040842-43040861 MsG0480020539.01.T01:intron 10.0%
!!! TTTTTTTACTATTAATTAAG+AGG + Chr4:43038589-43038608 MsG0480020539.01.T01:intron 10.0%
!! AAAAACTATTATATGTGTAT+TGG + Chr4:43044237-43044256 MsG0480020539.01.T01:intron 15.0%
!! AAAAATATGCAAAAAGAAAA+TGG - Chr4:43040046-43040065 None:intergenic 15.0%
!! AAAACAAAATATTGTATTTG+TGG - Chr4:43038747-43038766 None:intergenic 15.0%
!! AAACAAAATATTGTATTTGT+GGG - Chr4:43038746-43038765 None:intergenic 15.0%
!! AAACAACTAAATAAATCATA+TGG - Chr4:43038304-43038323 None:intergenic 15.0%
!! AACAACTAAATAAATCATAT+GGG - Chr4:43038303-43038322 None:intergenic 15.0%
!! ATCAAGAATGTAAAAAATAA+GGG + Chr4:43039979-43039998 MsG0480020539.01.T01:intron 15.0%
!! ATTTAGAAAAAAATAGATTC+TGG - Chr4:43036946-43036965 None:intergenic 15.0%
!! GAAAAGTTAACATATTTATA+GGG + Chr4:43043107-43043126 MsG0480020539.01.T01:intron 15.0%
!! GATAATTAAAATAAAACCTT+TGG - Chr4:43038479-43038498 None:intergenic 15.0%
!! TATATATATATTTCATCTCT+TGG + Chr4:43035684-43035703 MsG0480020539.01.T01:intron 15.0%
!! TATCAAGAATGTAAAAAATA+AGG + Chr4:43039978-43039997 MsG0480020539.01.T01:intron 15.0%
!! TTAACACTTATATTTATATG+AGG - Chr4:43042637-43042656 None:intergenic 15.0%
!! TTAGGGAAATATATATTATA+TGG - Chr4:43038535-43038554 None:intergenic 15.0%
!! TTATTGTAAATAATGAGATT+CGG + Chr4:43045176-43045195 MsG0480020539.01.T01:three_prime_UTR 15.0%
!! TTCAATATAAACCAAAATAT+GGG + Chr4:43038054-43038073 MsG0480020539.01.T01:intron 15.0%
!!! AAATTTTCAATAACTACTTT+TGG + Chr4:43042737-43042756 MsG0480020539.01.T01:intron 15.0%
!!! AAATTTTCAATCTTTACTTT+TGG - Chr4:43043043-43043062 None:intergenic 15.0%
!!! AATGATTTTTTTTAGCAAAA+TGG - Chr4:43036885-43036904 None:intergenic 15.0%
!!! AATTTAGAGATTTTGTTTTA+AGG - Chr4:43037061-43037080 None:intergenic 15.0%
!!! ATAAGTGTTAAATATGTTTT+TGG + Chr4:43042646-43042665 MsG0480020539.01.T01:intron 15.0%
!!! ATCTCAAAAAAATGATTTTT+AGG + Chr4:43036994-43037013 MsG0480020539.01.T01:intron 15.0%
!!! ATTTTCTTTTTGCATATTTT+TGG + Chr4:43040045-43040064 MsG0480020539.01.T01:intron 15.0%
!!! GGTGTTTAATTTATTTAATA+GGG + Chr4:43039326-43039345 MsG0480020539.01.T01:intron 15.0%
!!! GTAAAGATTGAAAATTTTAT+AGG + Chr4:43043046-43043065 MsG0480020539.01.T01:intron 15.0%
!!! GTAGTTATTGAAAATTTTAT+AGG - Chr4:43042734-43042753 None:intergenic 15.0%
!!! GTTTTTAACTTATAAATTAC+TGG - Chr4:43043732-43043751 None:intergenic 15.0%
!!! GTTTTTAATTAATTAATGTG+TGG - Chr4:43042463-43042482 None:intergenic 15.0%
!!! TAAAAATTGACTTTTTTTAG+AGG - Chr4:43041271-43041290 None:intergenic 15.0%
!!! TCTATTTTTTTCTAAATGTA+AGG + Chr4:43036949-43036968 MsG0480020539.01.T01:intron 15.0%
!!! TGGTGTTTAATTTATTTAAT+AGG + Chr4:43039325-43039344 MsG0480020539.01.T01:intron 15.0%
!!! TTTGTTTTTAAATAACTACA+AGG + Chr4:43038969-43038988 MsG0480020539.01.T01:intron 15.0%
!!! TTTTAGAGGAAAATTAAAAA+TGG - Chr4:43041257-43041276 None:intergenic 15.0%
!! AAAATGTTTCAATCAAAAGT+TGG + Chr4:43043595-43043614 MsG0480020539.01.T01:intron 20.0%
!! AAAGAATTACAGATACTATA+AGG + Chr4:43038933-43038952 MsG0480020539.01.T01:intron 20.0%
!! AACATGTAAAAAGAAAACAA+AGG + Chr4:43037719-43037738 MsG0480020539.01.T01:intron 20.0%
!! AATAAATAAACCATGGAAAA+AGG - Chr4:43036202-43036221 None:intergenic 20.0%
!! AATAGCTTAATCTAAGTTAT+AGG + Chr4:43040009-43040028 MsG0480020539.01.T01:intron 20.0%
!! AATTCCATTTCTTAATCTAA+CGG + Chr4:43038873-43038892 MsG0480020539.01.T01:intron 20.0%
!! ACAACTAAATAAATCATATG+GGG - Chr4:43038302-43038321 None:intergenic 20.0%
!! ACTGGTTAAGAAATTATAAA+TGG - Chr4:43037931-43037950 None:intergenic 20.0%
!! ATGAATCTAGCATTATTTAT+TGG + Chr4:43038195-43038214 MsG0480020539.01.T01:intron 20.0%
!! ATTAATCATTCCATTAATCT+TGG - Chr4:43041775-43041794 None:intergenic 20.0%
!! ATTAGGGTAAACAATTTATA+AGG - Chr4:43044419-43044438 None:intergenic 20.0%
!! ATTGAAGAATGAATACATTA+AGG - Chr4:43035931-43035950 None:intergenic 20.0%
!! CAAAAAAAATCCAAAACAAA+CGG - Chr4:43036788-43036807 None:intergenic 20.0%
!! CGAAAAGTTAACATATTTAT+AGG + Chr4:43043106-43043125 MsG0480020539.01.T01:intron 20.0%
!! CTAACATATACCTAAAAAAA+TGG + Chr4:43042098-43042117 MsG0480020539.01.T01:intron 20.0%
!! CTTCAATATAAACCAAAATA+TGG + Chr4:43038053-43038072 MsG0480020539.01.T01:intron 20.0%
!! GAAAAATTACATAAAATACC+TGG - Chr4:43043569-43043588 None:intergenic 20.0%
!! GAAAAGTGAACATATTTATA+GGG - Chr4:43042673-43042692 None:intergenic 20.0%
!! GCAAAGAAATATTGTTAAAA+TGG + Chr4:43038779-43038798 MsG0480020539.01.T01:intron 20.0%
!! TATACAGAATGAAGTAAATT+TGG + Chr4:43041052-43041071 MsG0480020539.01.T01:intron 20.0%
!! TATATATCAATATCATAAGG+TGG - Chr4:43036416-43036435 None:intergenic 20.0%
!! TCAAGAATGTAAAAAATAAG+GGG + Chr4:43039980-43039999 MsG0480020539.01.T01:intron 20.0%
!! TTGAAGAATGAATACATTAA+GGG - Chr4:43035930-43035949 None:intergenic 20.0%
!!! AAATTTTTTGCCAAGATTAA+TGG + Chr4:43041762-43041781 MsG0480020539.01.T01:intron 20.0%
!!! AAGTTGAAGGAAAATTTTAA+AGG + Chr4:43043075-43043094 MsG0480020539.01.T01:intron 20.0%
!!! ACTTTTGAAACCATTTTTTT+AGG - Chr4:43042111-43042130 None:intergenic 20.0%
!!! AGTTGAAGGAAAATTTTAAA+GGG + Chr4:43043076-43043095 MsG0480020539.01.T01:intron 20.0%
!!! ATATGAGTTTACTTTAAAAG+AGG + Chr4:43043015-43043034 MsG0480020539.01.T01:intron 20.0%
!!! ATGAACAAATTTTTCAAGAT+TGG - Chr4:43042014-43042033 None:intergenic 20.0%
!!! ATTTATTGTTCTGTTGTTTT+GGG - Chr4:43040561-43040580 None:intergenic 20.0%
!!! CACTTTTTTAATGTTTTCAA+TGG - Chr4:43044849-43044868 None:intergenic 20.0%
!!! CATGTTTCTAAATTAATTGT+AGG + Chr4:43043996-43044015 MsG0480020539.01.T01:intron 20.0%
!!! CATTTTTTTAGGTATATGTT+AGG - Chr4:43042100-43042119 None:intergenic 20.0%
!!! TAAAGTGTTTGTATTTTGAA+TGG - Chr4:43040704-43040723 None:intergenic 20.0%
!!! TATAGGGTTAAATATGTTTT+TGG - Chr4:43043134-43043153 None:intergenic 20.0%
!!! TATGAGTTTACTTTAAAAGA+GGG + Chr4:43043016-43043035 MsG0480020539.01.T01:intron 20.0%
!!! TATTAGTGTGTTATTTTTCT+TGG + Chr4:43041338-43041357 MsG0480020539.01.T01:intron 20.0%
!!! TATTTATTGTTCTGTTGTTT+TGG - Chr4:43040562-43040581 None:intergenic 20.0%
!!! TGAAATAGATTTTCATTTTG+AGG - Chr4:43036913-43036932 None:intergenic 20.0%
!!! TTGTTTTTATTGCAGAAAAA+AGG + Chr4:43038422-43038441 MsG0480020539.01.T01:intron 20.0%
!!! TTTAAGGATCTCAAATTTTA+AGG + Chr4:43042378-43042397 MsG0480020539.01.T01:intron 20.0%
!!! TTTTTCTTCTATATGCTTTT+TGG - Chr4:43036273-43036292 None:intergenic 20.0%
!!! TTTTTGACATCACATTTTTA+AGG + Chr4:43042362-43042381 MsG0480020539.01.T01:intron 20.0%
! AACCACAACAGAAATTAATA+TGG - Chr4:43038404-43038423 None:intergenic 25.0%
! AAGACAACAACAAAAACAAA+TGG - Chr4:43036062-43036081 None:intergenic 25.0%
! AATGCATAAACTGCATAAAT+TGG - Chr4:43040798-43040817 None:intergenic 25.0%
! AGAATGAGAATGTTTACATA+AGG - Chr4:43036634-43036653 None:intergenic 25.0%
! AGTGTTAGAAACAGAAAATT+TGG + Chr4:43041222-43041241 MsG0480020539.01.T01:intron 25.0%
! ATAAACCAAAATATGGGAAA+TGG + Chr4:43038060-43038079 MsG0480020539.01.T01:intron 25.0%
! ATCAAGATAAGAAATGATGA+AGG + Chr4:43036142-43036161 MsG0480020539.01.T01:CDS 25.0%
! ATCATTTAATACTCGATAGT+TGG - Chr4:43044177-43044196 None:intergenic 25.0%
! ATCCATATTAATTTCTGTTG+TGG + Chr4:43038399-43038418 MsG0480020539.01.T01:intron 25.0%
! ATGTACTCATCAATATGAAA+TGG - Chr4:43038109-43038128 None:intergenic 25.0%
! ATTAATTAAGAGGTAAGTGT+AGG + Chr4:43038599-43038618 MsG0480020539.01.T01:intron 25.0%
! ATTTAATAGGGACTATTCTT+GGG + Chr4:43039338-43039357 MsG0480020539.01.T01:intron 25.0%
! CAAAATCACATGTTAAAACT+TGG + Chr4:43036716-43036735 MsG0480020539.01.T01:intron 25.0%
! CATCATTATTCTACTCAAAA+TGG - Chr4:43036336-43036355 None:intergenic 25.0%
! CATGTACTAAATAAGTTCAT+AGG + Chr4:43039638-43039657 MsG0480020539.01.T01:intron 25.0%
! CGAAAAGTGAACATATTTAT+AGG - Chr4:43042674-43042693 None:intergenic 25.0%
! GAACTTATTTAGTACATGTT+TGG - Chr4:43039636-43039655 None:intergenic 25.0%
! GCTCTTCAATAAAAATAGTT+TGG - Chr4:43042137-43042156 None:intergenic 25.0%
! TAGGTGTGTGTTAATTAATA+GGG - Chr4:43037979-43037998 None:intergenic 25.0%
! TATCATATACGAGGAAATTA+AGG - Chr4:43040766-43040785 None:intergenic 25.0%
! TATTTAATAGGGACTATTCT+TGG + Chr4:43039337-43039356 MsG0480020539.01.T01:intron 25.0%
! TCATGAAAGTTGTCTATTAA+TGG - Chr4:43042176-43042195 None:intergenic 25.0%
! TCGATGTATATAATAACACT+AGG + Chr4:43043639-43043658 MsG0480020539.01.T01:intron 25.0%
! TGTATGTTTGGTATTAATGT+GGG + Chr4:43039475-43039494 MsG0480020539.01.T01:intron 25.0%
! TGTGAAATCATTTGTCAATT+TGG - Chr4:43043698-43043717 None:intergenic 25.0%
! TTAAATTTAGACGTCAAAAC+AGG + Chr4:43037161-43037180 MsG0480020539.01.T01:intron 25.0%
! TTAATTAAGAGGTAAGTGTA+GGG + Chr4:43038600-43038619 MsG0480020539.01.T01:intron 25.0%
! TTGTAAAACGTAAAAAGACA+AGG - Chr4:43042604-43042623 None:intergenic 25.0%
!! AAGTTGAAGGAAAATTTTAG+AGG - Chr4:43042705-43042724 None:intergenic 25.0%
!! AATTTCTTTTGTACTTGAAC+AGG + Chr4:43044878-43044897 MsG0480020539.01.T01:intron 25.0%
!! ACTTTTCTTTATCATATACG+AGG - Chr4:43040775-43040794 None:intergenic 25.0%
!! AGTTGAAGGAAAATTTTAGA+GGG - Chr4:43042704-43042723 None:intergenic 25.0%
!! ATTAACAAAACCTTTTCATG+AGG - Chr4:43037477-43037496 None:intergenic 25.0%
!! ATTTTGTCAAATCATGTGAA+TGG - Chr4:43040984-43041003 None:intergenic 25.0%
!! GACTTTAGTTTATTATTGCT+AGG + Chr4:43043496-43043515 MsG0480020539.01.T01:intron 25.0%
!! GATGTTTTTCACCTTATTAA+AGG + Chr4:43041568-43041587 MsG0480020539.01.T01:CDS 25.0%
!! TATAGAAGAAAAAAGAGTGT+TGG + Chr4:43036280-43036299 MsG0480020539.01.T01:intron 25.0%
!! TCTGAAGTTAATATTCTTGA+TGG + Chr4:43039044-43039063 MsG0480020539.01.T01:intron 25.0%
!! TCTTGAAAAATTTGTTCATG+AGG + Chr4:43042015-43042034 MsG0480020539.01.T01:CDS 25.0%
!! TTGGTTTGAATAAATCATTG+TGG - Chr4:43039606-43039625 None:intergenic 25.0%
!! TTTTCAACCAATAGAAATAG+AGG - Chr4:43042211-43042230 None:intergenic 25.0%
!!! AAGCTGTTTTGACATTTTTA+AGG - Chr4:43040602-43040621 None:intergenic 25.0%
!!! AATTTTCTGTTTCTAACACT+TGG - Chr4:43041222-43041241 None:intergenic 25.0%
!!! ATTGTTATTGGAGAGTATTA+TGG + Chr4:43044093-43044112 MsG0480020539.01.T01:CDS 25.0%
!!! GAGTCAATCATTTTTTAGAA+GGG + Chr4:43039872-43039891 MsG0480020539.01.T01:intron 25.0%
!!! GATTCAGAATTTTAAAACAC+CGG + Chr4:43040193-43040212 MsG0480020539.01.T01:intron 25.0%
!!! TCATATTTTTGGTGTATGTT+TGG + Chr4:43039463-43039482 MsG0480020539.01.T01:intron 25.0%
!!! TCATTTTCCTCTATTTCTAT+TGG + Chr4:43042201-43042220 MsG0480020539.01.T01:intron 25.0%
!!! TGTTTTGACATTTTTAAGGT+TGG - Chr4:43040598-43040617 None:intergenic 25.0%
!!! TTCAACAGATTATTGATTCA+TGG + Chr4:43041100-43041119 MsG0480020539.01.T01:intron 25.0%
!!! TTGGTGTATTTTGAAACATA+GGG + Chr4:43037243-43037262 MsG0480020539.01.T01:intron 25.0%
!!! TTTGGTGTATTTTGAAACAT+AGG + Chr4:43037242-43037261 MsG0480020539.01.T01:intron 25.0%
!!! TTTGTTTTTGTTGTTGTCTT+AGG + Chr4:43036062-43036081 MsG0480020539.01.T01:intron 25.0%
!!! TTTTAAGGAAACATTTCTTG+AGG - Chr4:43038142-43038161 None:intergenic 25.0%
AAAAAGACAAGGTAGAATTG+CGG - Chr4:43042593-43042612 None:intergenic 30.0%
AAACAAGAGAAACTAGAACA+AGG - Chr4:43040935-43040954 None:intergenic 30.0%
AAACAAGTGACTAATCAATC+AGG + Chr4:43035397-43035416 MsG0480020539.01.T01:five_prime_UTR 30.0%
AACCAATTTCTCCAATTCTT+TGG - Chr4:43035836-43035855 None:intergenic 30.0%
AAGAACATGATGCTATCAAA+GGG - Chr4:43043818-43043837 None:intergenic 30.0%
AATAATCGAACCCTATGAAT+GGG - Chr4:43043870-43043889 None:intergenic 30.0%
AATTGTAGGCTGATAATTTG+AGG + Chr4:43044010-43044029 MsG0480020539.01.T01:intron 30.0%
ATACAGTTCACTTTCTATAG+AGG + Chr4:43039418-43039437 MsG0480020539.01.T01:intron 30.0%
ATATGTGTTAGTCCTAGATT+AGG + Chr4:43043842-43043861 MsG0480020539.01.T01:intron 30.0%
ATCAGGTTTCTTTCTATAGA+AGG + Chr4:43035414-43035433 MsG0480020539.01.T01:five_prime_UTR 30.0%
ATCTGATGAATGGTTATGAA+AGG - Chr4:43040670-43040689 None:intergenic 30.0%
ATTGAAGCAGTAGTACTAAA+AGG - Chr4:43036669-43036688 None:intergenic 30.0%
CAAAATATTGTATTTGTGGG+TGG - Chr4:43038743-43038762 None:intergenic 30.0%
CATGCAAAGTTATGATCTAT+AGG - Chr4:43035804-43035823 None:intergenic 30.0%
GAAAGTTGTCAAAAAGTTGT+TGG + Chr4:43042287-43042306 MsG0480020539.01.T01:intron 30.0%
GAGAATGTTTACATAAGGAA+TGG - Chr4:43036629-43036648 None:intergenic 30.0%
GATTAAAACACAAGTGAAGT+AGG - Chr4:43037998-43038017 None:intergenic 30.0%
GCAAGATGTTTCATTGTTAT+TGG + Chr4:43044081-43044100 MsG0480020539.01.T01:CDS 30.0%
GTAGGTGTGTGTTAATTAAT+AGG - Chr4:43037980-43037999 None:intergenic 30.0%
GTATATGTTAGGAAGACTTA+GGG - Chr4:43042089-43042108 None:intergenic 30.0%
GTGTATGTTTGGTATTAATG+TGG + Chr4:43039474-43039493 MsG0480020539.01.T01:intron 30.0%
GTTAGAATCAATCTGATGAA+TGG - Chr4:43040680-43040699 None:intergenic 30.0%
TAAATCATAGAGACACAAAG+AGG - Chr4:43045159-43045178 None:intergenic 30.0%
TAAGGATCTCAAATTTCTCT+AGG + Chr4:43042396-43042415 MsG0480020539.01.T01:intron 30.0%
TAATATTTCGAGCTTGTGTT+TGG - Chr4:43039531-43039550 None:intergenic 30.0%
TACTATTTCCAAAGAAACAC+AGG + Chr4:43035592-43035611 MsG0480020539.01.T01:five_prime_UTR 30.0%
TATGTGTTAGTCCTAGATTA+GGG + Chr4:43043843-43043862 MsG0480020539.01.T01:intron 30.0%
TATTGATGAGTACATTTGCA+TGG + Chr4:43038114-43038133 MsG0480020539.01.T01:intron 30.0%
TCAAATATATGTGTGTACCT+GGG - Chr4:43039201-43039220 None:intergenic 30.0%
TGAATCTCTGACATGAAATA+TGG + Chr4:43037671-43037690 MsG0480020539.01.T01:intron 30.0%
TTAATTAGGGTCATGTTAAC+CGG + Chr4:43037788-43037807 MsG0480020539.01.T01:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG + Chr4:43043062-43043081 MsG0480020539.01.T01:intron 30.0%
TTATAGGGACTAAAAGTTGA+AGG - Chr4:43043081-43043062 None:intergenic 30.0%
TTCAAATATATGTGTGTACC+TGG - Chr4:43039202-43039221 None:intergenic 30.0%
TTGATCTAACAATCTACACT+TGG - Chr4:43038843-43038862 None:intergenic 30.0%
TTGTTGAAAGTTGAATCATG+TGG - Chr4:43044759-43044778 None:intergenic 30.0%
TTTGGAAATAGTAACCTATG+TGG - Chr4:43035585-43035604 None:intergenic 30.0%
! AAAATCTGTATTGTTGTTGC+AGG + Chr4:43041367-43041386 MsG0480020539.01.T01:intron 30.0%
! AAGTACCATTTTCTCTCTTA+TGG - Chr4:43035462-43035481 None:intergenic 30.0%
! AATACTCGATAGTTGGTATT+AGG - Chr4:43044170-43044189 None:intergenic 30.0%
! AGGAAATTAAGGTGTTATCT+TGG - Chr4:43040755-43040774 None:intergenic 30.0%
! AGTACCATTTTCTCTCTTAT+GGG - Chr4:43035461-43035480 None:intergenic 30.0%
! ATCTACCATTTCCCATATTT+TGG - Chr4:43038068-43038087 None:intergenic 30.0%
! ATGAAACCTAATCCTTCTTT+TGG - Chr4:43036393-43036412 None:intergenic 30.0%
! CTATTTTCTCACACATTTCT+AGG - Chr4:43040893-43040912 None:intergenic 30.0%
! CTTGAAATGATGAAGTATTC+AGG - Chr4:43041874-43041893 None:intergenic 30.0%
! GAAACTCAAAAGTTTTCACT+TGG - Chr4:43035750-43035769 None:intergenic 30.0%
! GGTGTTTGTTGAAATCTAAT+TGG - Chr4:43036571-43036590 None:intergenic 30.0%
! TAATCTAGGACTAACACATA+TGG - Chr4:43043843-43043862 None:intergenic 30.0%
! TTTTGCAAGTGGATATCTTT+GGG + Chr4:43045055-43045074 MsG0480020539.01.T01:three_prime_UTR 30.0%
!! AAAATGATTGACTCGTTAAC+CGG - Chr4:43039866-43039885 None:intergenic 30.0%
!! AAGTTGGTATAAGATAGAGA+TGG + Chr4:43043611-43043630 MsG0480020539.01.T01:intron 30.0%
!! AGCAAAGGAAACATTTTGAT+TGG - Chr4:43042537-43042556 None:intergenic 30.0%
!! ATATGCTTTTTGGAAAGAGT+TGG - Chr4:43036263-43036282 None:intergenic 30.0%
!! GTTTTATGTGAATGATGATG+AGG + Chr4:43045200-43045219 MsG0480020539.01.T01:three_prime_UTR 30.0%
!! TACGGTGTCTTATTTGTAAT+CGG - Chr4:43040373-43040392 None:intergenic 30.0%
!! TCACCTTATTAAAGGCATTT+GGG + Chr4:43041576-43041595 MsG0480020539.01.T01:CDS 30.0%
!! TTCACCTTATTAAAGGCATT+TGG + Chr4:43041575-43041594 MsG0480020539.01.T01:CDS 30.0%
!! TTCATTTTCTGAGAGTTGTT+GGG - Chr4:43037630-43037649 None:intergenic 30.0%
!!! CGAGTCAATCATTTTTTAGA+AGG + Chr4:43039871-43039890 MsG0480020539.01.T01:intron 30.0%
!!! TTTTTCAAGATTGGAAATCC+TGG - Chr4:43042005-43042024 None:intergenic 30.0%
AAAAGTTGACCTCTAAACTG+CGG + Chr4:43040629-43040648 MsG0480020539.01.T01:intron 35.0%
AAACCACCTATCCAAATGAA+GGG - Chr4:43041619-43041638 None:intergenic 35.0%
AAACTGCTGACAAATGTGTA+AGG - Chr4:43043235-43043254 None:intergenic 35.0%
AAGACTTGACTATCTTCTTG+TGG + Chr4:43035496-43035515 MsG0480020539.01.T01:five_prime_UTR 35.0%
AAGCCCAAATGCCTTTAATA+AGG - Chr4:43041582-43041601 None:intergenic 35.0%
AAGTGTTAGTAGCACTAAGA+TGG - Chr4:43035961-43035980 None:intergenic 35.0%
ACATAAGGAATGGTCAAAGA+TGG - Chr4:43036619-43036638 None:intergenic 35.0%
ACATTCGTTCAATCTCATCT+TGG + Chr4:43040224-43040243 MsG0480020539.01.T01:intron 35.0%
ACTGGTTAAGCAGTTATAAG+TGG + Chr4:43037823-43037842 MsG0480020539.01.T01:intron 35.0%
ACTTATAACTGCTTAACCAG+TGG - Chr4:43037824-43037843 None:intergenic 35.0%
AGAACATGATGCTATCAAAG+GGG - Chr4:43043817-43043836 None:intergenic 35.0%
AGATCATAACTTTGCATGCA+TGG + Chr4:43035806-43035825 MsG0480020539.01.T01:exon 35.0%
AGCCAAAGAATTGGAGAAAT+TGG + Chr4:43035831-43035850 MsG0480020539.01.T01:CDS 35.0%
AGCTAGAGTCAAGTAGATTA+AGG + Chr4:43039138-43039157 MsG0480020539.01.T01:CDS 35.0%
AGTTCACTCACTTCAAATTG+AGG - Chr4:43039684-43039703 None:intergenic 35.0%
ATAAGGATTGTGAGTTTCAC+CGG + Chr4:43039844-43039863 MsG0480020539.01.T01:intron 35.0%
ATACATTAAGGGTGATGTTG+AGG - Chr4:43035919-43035938 None:intergenic 35.0%
ATGACTCCAAAAGAAGGATT+AGG + Chr4:43036384-43036403 MsG0480020539.01.T01:intron 35.0%
ATTCCATGAAGAACTCCATA+AGG - Chr4:43035891-43035910 None:intergenic 35.0%
ATTGAGGTTGAGACATTCAA+CGG - Chr4:43039668-43039687 None:intergenic 35.0%
CAAGAACATGATGCTATCAA+AGG - Chr4:43043819-43043838 None:intergenic 35.0%
CAAGTTATAGAAGAGAAGAG+AGG - Chr4:43035561-43035580 None:intergenic 35.0%
CACTTGAAATGTTTCCTTCA+TGG + Chr4:43036545-43036564 MsG0480020539.01.T01:CDS 35.0%
CCAACTATGTCGAATATTGA+CGG + Chr4:43044047-43044066 MsG0480020539.01.T01:CDS 35.0%
CGAACCGTTAGATTAAGAAA+TGG - Chr4:43038880-43038899 None:intergenic 35.0%
CTCACAATCCTTATAACACT+TGG - Chr4:43039838-43039857 None:intergenic 35.0%
CTTGAGAAATGACTATGAGA+AGG - Chr4:43044961-43044980 None:intergenic 35.0%
GAATAATCGAACCCTATGAA+TGG - Chr4:43043871-43043890 None:intergenic 35.0%
GCAACAAATAGATGGGATAA+TGG + Chr4:43041847-43041866 MsG0480020539.01.T01:CDS 35.0%
GGTATATGTTAGGAAGACTT+AGG - Chr4:43042090-43042109 None:intergenic 35.0%
GTACATGTCAAACAAGTAGT+AGG - Chr4:43043388-43043407 None:intergenic 35.0%
GTAGATGTTGACACAACAAT+TGG + Chr4:43041811-43041830 MsG0480020539.01.T01:intron 35.0%
GTCAAAAAGTTGTTGGCAAA+TGG + Chr4:43042294-43042313 MsG0480020539.01.T01:intron 35.0%
GTTGTTGTCTTAGGAATCAA+GGG + Chr4:43036071-43036090 MsG0480020539.01.T01:intron 35.0%
TAATCAAAACATTGAGTGCC+AGG + Chr4:43043548-43043567 MsG0480020539.01.T01:intron 35.0%
TAATGAATTGAGAGTGATCG+TGG + Chr4:43041486-43041505 MsG0480020539.01.T01:CDS 35.0%
TAATTTCTTAACCAGTGTCC+CGG + Chr4:43037935-43037954 MsG0480020539.01.T01:intron 35.0%
TCCAAAGAAACACAGGTAAA+TGG + Chr4:43035599-43035618 MsG0480020539.01.T01:intron 35.0%
TCTCTGACATGAAATATGGA+AGG + Chr4:43037675-43037694 MsG0480020539.01.T01:intron 35.0%
TGAAAGAGCAATACTTACCA+GGG - Chr4:43039385-43039404 None:intergenic 35.0%
TGAAATCTAATTGGCCATGA+AGG - Chr4:43036562-43036581 None:intergenic 35.0%
TGAACGAATGTACTTAGTTC+CGG - Chr4:43040215-43040234 None:intergenic 35.0%
TGAATGGTTATGAAAGGTGA+CGG - Chr4:43040664-43040683 None:intergenic 35.0%
TGATGAAGGAAAAGCAAGTA+TGG + Chr4:43036156-43036175 MsG0480020539.01.T01:intron 35.0%
TGGGAAATGGTAGATAAAGA+TGG + Chr4:43038073-43038092 MsG0480020539.01.T01:intron 35.0%
TGTTGTTGTCTTAGGAATCA+AGG + Chr4:43036070-43036089 MsG0480020539.01.T01:intron 35.0%
TTCCATGAAGAACTCCATAA+GGG - Chr4:43035890-43035909 None:intergenic 35.0%
TTGAAAGAGCAATACTTACC+AGG - Chr4:43039386-43039405 None:intergenic 35.0%
TTGAACCATTTGCAATTCTG+TGG - Chr4:43044938-43044957 None:intergenic 35.0%
TTGGATAGAAGAATGAGCAA+AGG - Chr4:43042552-43042571 None:intergenic 35.0%
! AACACACCTTTTTCCTTAGA+CGG - Chr4:43038698-43038717 None:intergenic 35.0%
! AACCTTTTCATGAGGTGATT+TGG - Chr4:43037469-43037488 None:intergenic 35.0%
! CTTCTATAACTTGTCCACAT+AGG + Chr4:43035568-43035587 MsG0480020539.01.T01:five_prime_UTR 35.0%
! CTTTGATAGCATCATGTTCT+TGG + Chr4:43043817-43043836 MsG0480020539.01.T01:intron 35.0%
! CTTTTGCAAGTGGATATCTT+TGG + Chr4:43045054-43045073 MsG0480020539.01.T01:three_prime_UTR 35.0%
! GAAGATGCTTTTGCACTTAT+TGG - Chr4:43037336-43037355 None:intergenic 35.0%
! GGGGGTATACTACATATATA+CGG - Chr4:43040391-43040410 None:intergenic 35.0%
! GGTTTTTCGTGTTCTCTTTT+GGG - Chr4:43040411-43040430 None:intergenic 35.0%
! GTACCATTTTCTCTCTTATG+GGG - Chr4:43035460-43035479 None:intergenic 35.0%
! GTTTTTCGTGTTCTCTTTTG+GGG - Chr4:43040410-43040429 None:intergenic 35.0%
! TAAGTGCTCACAGCATTTTA+AGG - Chr4:43038157-43038176 None:intergenic 35.0%
! TGGTTTTTCGTGTTCTCTTT+TGG - Chr4:43040412-43040431 None:intergenic 35.0%
! TTAAGGTGTTATCTTGGTGT+TGG - Chr4:43040749-43040768 None:intergenic 35.0%
! TTCTTCTCTTCCTTTTTCCA+TGG + Chr4:43036189-43036208 MsG0480020539.01.T01:intron 35.0%
! TTTTTCGTGTTCTCTTTTGG+GGG - Chr4:43040409-43040428 None:intergenic 35.0%
!! AGAAGAAAAAAGAGTGTTGG+AGG + Chr4:43036283-43036302 MsG0480020539.01.T01:intron 35.0%
!! CTTCATTTTCTGAGAGTTGT+TGG - Chr4:43037631-43037650 None:intergenic 35.0%
!! TAATTTTGGAGAGCTAGAAC+AGG + Chr4:43036102-43036121 MsG0480020539.01.T01:CDS 35.0%
!!! ACTTTTGAGTTTCAGCTTCA+AGG + Chr4:43035757-43035776 MsG0480020539.01.T01:intron 35.0%
!!! CAAGGGTCTGCTTTTAATTT+TGG + Chr4:43036088-43036107 MsG0480020539.01.T01:CDS 35.0%
!!! GAGGAAGAAAAGTTTTGAGT+AGG + Chr4:43036302-43036321 MsG0480020539.01.T01:intron 35.0%
!!! GTGTATTTTGAAACATAGGG+AGG + Chr4:43037246-43037265 MsG0480020539.01.T01:intron 35.0%
!!! TGACATTTTTAAGGTTGGCT+GGG - Chr4:43040593-43040612 None:intergenic 35.0%
!!! TTGACATTTTTAAGGTTGGC+TGG - Chr4:43040594-43040613 None:intergenic 35.0%
AAATGTTAACCAATGCCTCC+GGG - Chr4:43037956-43037975 None:intergenic 40.0%
AACTACATTCTCTTGGGTCA+TGG - Chr4:43039811-43039830 None:intergenic 40.0%
AATATTGACGGTTCGTCAAG+CGG + Chr4:43044059-43044078 MsG0480020539.01.T01:CDS 40.0%
ACACCCCATAAGAGAGAAAA+TGG + Chr4:43035454-43035473 MsG0480020539.01.T01:five_prime_UTR 40.0%
ACATAGGGAGGTTCAAAATC+AGG + Chr4:43037258-43037277 MsG0480020539.01.T01:intron 40.0%
ACTACATTCTCTTGGGTCAT+GGG - Chr4:43039810-43039829 None:intergenic 40.0%
AGAAAAGACACTGGATCCAA+AGG + Chr4:43038460-43038479 MsG0480020539.01.T01:CDS 40.0%
AGAAGAAGATCAACGACACA+TGG + Chr4:43041426-43041445 MsG0480020539.01.T01:CDS 40.0%
AGATTAGGGACCCATTCATA+GGG + Chr4:43043857-43043876 MsG0480020539.01.T01:intron 40.0%
AGCAACCACAGAATTGCAAA+TGG + Chr4:43044930-43044949 MsG0480020539.01.T01:CDS 40.0%
AGCCAAATCACCTCATGAAA+AGG + Chr4:43037464-43037483 MsG0480020539.01.T01:CDS 40.0%
AGTTGGGTCCAAGTGTTATA+AGG + Chr4:43039827-43039846 MsG0480020539.01.T01:intron 40.0%
ATGACCCAAGAGAATGTAGT+TGG + Chr4:43039810-43039829 MsG0480020539.01.T01:intron 40.0%
ATGATAGCACATCGTGATTC+AGG + Chr4:43036760-43036779 MsG0480020539.01.T01:intron 40.0%
ATTCACAGTGAGTTTGACTG+AGG - Chr4:43037130-43037149 None:intergenic 40.0%
CACTTGCAAAAGCAGCTTTA+AGG - Chr4:43045046-43045065 None:intergenic 40.0%
CCGTCAATATTCGACATAGT+TGG - Chr4:43044050-43044069 None:intergenic 40.0%
CTTAATCTAACGGTTCGTCA+AGG + Chr4:43038883-43038902 MsG0480020539.01.T01:intron 40.0%
GAAAAGCCGTCTAAGGAAAA+AGG + Chr4:43038689-43038708 MsG0480020539.01.T01:CDS 40.0%
GAAACCACCTATCCAAATGA+AGG - Chr4:43041620-43041639 None:intergenic 40.0%
GAAATGTTAACCAATGCCTC+CGG - Chr4:43037957-43037976 None:intergenic 40.0%
GAACAGGCAATTGTTCTTCA+AGG + Chr4:43036118-43036137 MsG0480020539.01.T01:CDS 40.0%
GAAGCAGTAGTACTAAAAGG+TGG - Chr4:43036666-43036685 None:intergenic 40.0%
GAATGGTTATGAAAGGTGAC+GGG - Chr4:43040663-43040682 None:intergenic 40.0%
GCCATTTACCTGTGTTTCTT+TGG - Chr4:43035603-43035622 None:intergenic 40.0%
GCTCAATCATGCATGTATGT+TGG - Chr4:43042571-43042590 None:intergenic 40.0%
GCTGACAAATGTGTAAGGAT+TGG - Chr4:43043230-43043249 None:intergenic 40.0%
GTACATGTTTGGATACACGT+TGG - Chr4:43039625-43039644 None:intergenic 40.0%
TAGATTAGGGACCCATTCAT+AGG + Chr4:43043856-43043875 MsG0480020539.01.T01:intron 40.0%
TAGCGCAGCAACAAATAGAT+GGG + Chr4:43041840-43041859 MsG0480020539.01.T01:CDS 40.0%
TATGAATGGGTCCCTAATCT+AGG - Chr4:43043857-43043876 None:intergenic 40.0%
TCAAGTCAACATGTCCCTTA+TGG + Chr4:43035873-43035892 MsG0480020539.01.T01:CDS 40.0%
TCCTAAACCAAGACAATGCT+TGG + Chr4:43037552-43037571 MsG0480020539.01.T01:intron 40.0%
TGACCCAAGAGAATGTAGTT+GGG + Chr4:43039811-43039830 MsG0480020539.01.T01:intron 40.0%
TGATAGCACATCGTGATTCA+GGG + Chr4:43036761-43036780 MsG0480020539.01.T01:intron 40.0%
TGGTACTGCACAATGTGTAA+TGG - Chr4:43038723-43038742 None:intergenic 40.0%
TGGTATAAGATAGAGATGGC+TGG + Chr4:43043615-43043634 MsG0480020539.01.T01:intron 40.0%
TGTTAGTAGCACTAAGATGG+AGG - Chr4:43035958-43035977 None:intergenic 40.0%
TTATTTAAACGTGACACCCG+AGG + Chr4:43040338-43040357 MsG0480020539.01.T01:intron 40.0%
TTCACAGTGAGTTTGACTGA+GGG - Chr4:43037129-43037148 None:intergenic 40.0%
TTCCACATCAGAAAAGACAC+TGG + Chr4:43038451-43038470 MsG0480020539.01.T01:CDS 40.0%
TTGACATGGAGTATGCAAGA+TGG + Chr4:43041401-43041420 MsG0480020539.01.T01:CDS 40.0%
TTTGCAATTCTGTGGTTGCT+TGG - Chr4:43044930-43044949 None:intergenic 40.0%
! AAAGAGACCAAGCATTGTCT+TGG - Chr4:43037562-43037581 None:intergenic 40.0%
! AACATTTCAAGTGTAGCTGC+TGG - Chr4:43036538-43036557 None:intergenic 40.0%
! ACCAAGCATTGTCTTGGTTT+AGG - Chr4:43037556-43037575 None:intergenic 40.0%
! ATCCAGTGTCTTTTCTGATG+TGG - Chr4:43038456-43038475 None:intergenic 40.0%
! ATCTATTTGTTGCTGCGCTA+GGG - Chr4:43041840-43041859 None:intergenic 40.0%
! TATGTGTTTTCCCGGATGAA+AGG - Chr4:43040505-43040524 None:intergenic 40.0%
! TGGTGTCAACAATAGCATTG+TGG - Chr4:43041931-43041950 None:intergenic 40.0%
!! CTGCTTTAGAAGAAGGAAAG+GGG + Chr4:43045078-43045097 MsG0480020539.01.T01:three_prime_UTR 40.0%
!! CTGTTTCTAACACTTGGTGA+TGG - Chr4:43041216-43041235 None:intergenic 40.0%
!! GAAATTGGTTTGTCTGAGTC+TGG + Chr4:43035846-43035865 MsG0480020539.01.T01:CDS 40.0%
!! GCTGCTTTAGAAGAAGGAAA+GGG + Chr4:43045077-43045096 MsG0480020539.01.T01:three_prime_UTR 40.0%
!! TAAGGGACATGTTGACTTGA+AGG - Chr4:43035873-43035892 None:intergenic 40.0%
!! TTGAAGGTCTTGTTCGAGAT+TGG - Chr4:43039168-43039187 None:intergenic 40.0%
!!! CTTAAAGCTGCTTTTGCAAG+TGG + Chr4:43045044-43045063 MsG0480020539.01.T01:three_prime_UTR 40.0%
!!! CTTCTTTTGGAGTCATGCAA+GGG - Chr4:43036380-43036399 None:intergenic 40.0%
!!! TTCTTTTTTCTGCAGCACTC+CGG - Chr4:43040529-43040548 None:intergenic 40.0%
AAGATTGGAAATCCTGGCCA+TGG - Chr4:43041999-43042018 None:intergenic 45.0%
ACATACCGTGATGAGTTCTG+AGG - Chr4:43041647-43041666 None:intergenic 45.0%
ACCACTACGAGTAGTGTTTG+TGG + Chr4:43040260-43040279 MsG0480020539.01.T01:intron 45.0%
AGAAGATCAACGACACATGG+CGG + Chr4:43041429-43041448 MsG0480020539.01.T01:CDS 45.0%
AGACCCTTCATTTGGATAGG+TGG + Chr4:43041613-43041632 MsG0480020539.01.T01:CDS 45.0%
AGGAGCTGCAATGTTTGACA+TGG + Chr4:43041387-43041406 MsG0480020539.01.T01:intron 45.0%
CATCCGGGAAAACACATAAC+CGG + Chr4:43040507-43040526 MsG0480020539.01.T01:intron 45.0%
CCTTGCATGACTCCAAAAGA+AGG + Chr4:43036378-43036397 MsG0480020539.01.T01:intron 45.0%
CTAGCGCAGCAACAAATAGA+TGG + Chr4:43041839-43041858 MsG0480020539.01.T01:CDS 45.0%
CTGCAAAGAAAAGCCGTCTA+AGG + Chr4:43038682-43038701 MsG0480020539.01.T01:CDS 45.0%
GAATTGAGAGTGATCGTGGA+CGG + Chr4:43041490-43041509 MsG0480020539.01.T01:CDS 45.0%
GAGAGACCCTTCATTTGGAT+AGG + Chr4:43041610-43041629 MsG0480020539.01.T01:CDS 45.0%
GCAGAAGAAGCTCTCTCTAA+AGG + Chr4:43041893-43041912 MsG0480020539.01.T01:CDS 45.0%
GCCTGTTCTTAAGCCATCAT+CGG - Chr4:43037421-43037440 None:intergenic 45.0%
GGACCCAACTACATTCTCTT+GGG - Chr4:43039817-43039836 None:intergenic 45.0%
GGTATTAGGTCTTACTCTCG+TGG - Chr4:43044156-43044175 None:intergenic 45.0%
GTCCCTTATGGAGTTCTTCA+TGG + Chr4:43035885-43035904 MsG0480020539.01.T01:CDS 45.0%
GTGAGAGAAGCTACAACTCT+TGG - Chr4:43036592-43036611 None:intergenic 45.0%
TAACAGCCACCTCCTTCAAT+CGG - Chr4:43041543-43041562 None:intergenic 45.0%
TAACTGCTTAACCAGTGGTC+CGG - Chr4:43037819-43037838 None:intergenic 45.0%
TAATGTGGGTCACGTGATTC+TGG + Chr4:43039489-43039508 MsG0480020539.01.T01:intron 45.0%
TAGGGAGGTTCAAAATCAGG+AGG + Chr4:43037261-43037280 MsG0480020539.01.T01:intron 45.0%
TCAACAGACACTGAGACGTT+TGG + Chr4:43038644-43038663 MsG0480020539.01.T01:CDS 45.0%
TCCACAAACACTACTCGTAG+TGG - Chr4:43040264-43040283 None:intergenic 45.0%
TGAAGCCCAAAGAGAGCTAA+GGG - Chr4:43044130-43044149 None:intergenic 45.0%
TGGACCCAACTACATTCTCT+TGG - Chr4:43039818-43039837 None:intergenic 45.0%
TTGAAGCCCAAAGAGAGCTA+AGG - Chr4:43044131-43044150 None:intergenic 45.0%
! ACCGATGATGGCTTAAGAAC+AGG + Chr4:43037417-43037436 MsG0480020539.01.T01:CDS 45.0%
! ACTCCGGTTATGTGTTTTCC+CGG - Chr4:43040513-43040532 None:intergenic 45.0%
! ATGAAAAGCGCAATGCCCAT+CGG - Chr4:43040449-43040468 None:intergenic 45.0%
! CATACCGTGATGAGTTCTGA+GGG - Chr4:43041646-43041665 None:intergenic 45.0%
! CATCTATTTGTTGCTGCGCT+AGG - Chr4:43041841-43041860 None:intergenic 45.0%
! GATTCAGGGTCCGTTTGTTT+TGG + Chr4:43036775-43036794 MsG0480020539.01.T01:intron 45.0%
! TAGGGACTATTCTTGGGTTG+TGG + Chr4:43039344-43039363 MsG0480020539.01.T01:intron 45.0%
! TCTATTTGTTGCTGCGCTAG+GGG - Chr4:43041839-43041858 None:intergenic 45.0%
! TGCATGGCTAGCCAAAGAAT+TGG + Chr4:43035822-43035841 MsG0480020539.01.T01:exon 45.0%
!! CTTGGTGTTGGAGTTTGAGT+AGG - Chr4:43040737-43040756 None:intergenic 45.0%
!! CTTTGGGCTGCTTTAGAAGA+AGG + Chr4:43045071-43045090 MsG0480020539.01.T01:three_prime_UTR 45.0%
!! GGAGGAGAAAGTACTGATTC+AGG + Chr4:43037279-43037298 MsG0480020539.01.T01:CDS 45.0%
!! GGCTGCTTTAGAAGAAGGAA+AGG + Chr4:43045076-43045095 MsG0480020539.01.T01:three_prime_UTR 45.0%
!! TTATGAAAGGTGACGGGCAA+GGG - Chr4:43040657-43040676 None:intergenic 45.0%
!!! CATTTTTAAGGTTGGCTGGG+TGG - Chr4:43040590-43040609 None:intergenic 45.0%
!!! CCTTCTTTTGGAGTCATGCA+AGG - Chr4:43036381-43036400 None:intergenic 45.0%
!! ACAAAAATTAAATTAAAAAT+AGG - Chr4:43042765-43042784 None:intergenic 5.0%
!! ATATATTATTATTTCATATA+AGG - Chr4:43038375-43038394 None:intergenic 5.0%
!! CAAAAATTAAATTAAAAATA+GGG - Chr4:43042764-43042783 None:intergenic 5.0%
!! TATAAAATATATATATTCTA+AGG + Chr4:43038559-43038578 MsG0480020539.01.T01:intron 5.0%
!!! AAAAAATTCTAAATTTTTTT+TGG + Chr4:43042931-43042950 MsG0480020539.01.T01:intron 5.0%
!!! AAAAATAATGAAATTTTTTT+TGG + Chr4:43037224-43037243 MsG0480020539.01.T01:intron 5.0%
!!! GATTAATTATTATTTTTTTT+TGG + Chr4:43041788-43041807 MsG0480020539.01.T01:intron 5.0%
!!! TTATTTATTTATAGTTTTAA+TGG + Chr4:43040095-43040114 MsG0480020539.01.T01:intron 5.0%
!!! TTTTTTATTAACATTAATTA+GGG + Chr4:43037775-43037794 MsG0480020539.01.T01:intron 5.0%
AAAGAGAGCTAAGGGCTCGA+AGG - Chr4:43044122-43044141 None:intergenic 50.0%
ATACGACATCCACCACCGAT+GGG + Chr4:43040431-43040450 MsG0480020539.01.T01:intron 50.0%
ATTGGAAATCCTGGCCATGG+CGG - Chr4:43041996-43042015 None:intergenic 50.0%
CAAATGAAGGGTCTCTCAGC+AGG - Chr4:43041607-43041626 None:intergenic 50.0%
CAGACCCTCAGAACTCATCA+CGG + Chr4:43041639-43041658 MsG0480020539.01.T01:CDS 50.0%
CTGCTGAGAGACCCTTCATT+TGG + Chr4:43041605-43041624 MsG0480020539.01.T01:CDS 50.0%
GCTATTGTTGACACCATCGC+CGG + Chr4:43041935-43041954 MsG0480020539.01.T01:CDS 50.0%
GGACAATATCCACCACCAAC+GGG + Chr4:43040472-43040491 MsG0480020539.01.T01:intron 50.0%
GGGACAATATCCACCACCAA+CGG + Chr4:43040471-43040490 MsG0480020539.01.T01:intron 50.0%
GTCATGTTAACCGGTGTCTC+CGG + Chr4:43037797-43037816 MsG0480020539.01.T01:intron 50.0%
TTTCTTAACCAGTGTCCCGG+AGG + Chr4:43037938-43037957 MsG0480020539.01.T01:intron 50.0%
! CGACGAGCTTTTCCGATTGA+AGG + Chr4:43041528-43041547 MsG0480020539.01.T01:CDS 50.0%
! CGAGCTTTTCCGATTGAAGG+AGG + Chr4:43041531-43041550 MsG0480020539.01.T01:CDS 50.0%
! CTATTCTTGGGTTGTGGTGG+TGG + Chr4:43039350-43039369 MsG0480020539.01.T01:CDS 50.0%
! GCTTTTCCGATTGAAGGAGG+TGG + Chr4:43041534-43041553 MsG0480020539.01.T01:CDS 50.0%
! GGACTATTCTTGGGTTGTGG+TGG + Chr4:43039347-43039366 MsG0480020539.01.T01:CDS 50.0%
! TCGAGCCCTTAGCTCTCTTT+GGG + Chr4:43044122-43044141 MsG0480020539.01.T01:CDS 50.0%
! TTCGAGCCCTTAGCTCTCTT+TGG + Chr4:43044121-43044140 MsG0480020539.01.T01:CDS 50.0%
!! GGTGGTGGAAATATAAGCCC+TGG + Chr4:43039365-43039384 MsG0480020539.01.T01:CDS 50.0%
!! GTTATGAAAGGTGACGGGCA+AGG - Chr4:43040658-43040677 None:intergenic 50.0%
!! GTTGGTGGTGGATATTGTCC+CGG - Chr4:43040472-43040491 None:intergenic 50.0%
!! TGGGCATTGCGCTTTTCATC+CGG + Chr4:43040450-43040469 MsG0480020539.01.T01:intron 50.0%
ATTGTTGACACCATCGCCGG+AGG + Chr4:43041938-43041957 MsG0480020539.01.T01:CDS 55.0%
CAGGAGACAGCAACCGATGA+TGG + Chr4:43037405-43037424 MsG0480020539.01.T01:CDS 55.0%
CATACGACATCCACCACCGA+TGG + Chr4:43040430-43040449 MsG0480020539.01.T01:intron 55.0%
CGTTGACGGCATGCAACAGA+TGG + Chr4:43041967-43041986 MsG0480020539.01.T01:CDS 55.0%
GCAGCAGCTTCAACAGCAAC+AGG + Chr4:43037386-43037405 MsG0480020539.01.T01:CDS 55.0%
TGTTGCATGCCGTCAACGAC+AGG - Chr4:43041965-43041984 None:intergenic 55.0%
TTGTTGACACCATCGCCGGA+GGG + Chr4:43041939-43041958 MsG0480020539.01.T01:CDS 55.0%
! AAAAGCGCAATGCCCATCGG+TGG - Chr4:43040446-43040465 None:intergenic 55.0%
! AACGACACATGGCGGAGCTT+AGG + Chr4:43041437-43041456 MsG0480020539.01.T01:CDS 55.0%
! ACGACACATGGCGGAGCTTA+GGG + Chr4:43041438-43041457 MsG0480020539.01.T01:CDS 55.0%
! ATGAAAGGCGCAATGCCCGT+TGG - Chr4:43040490-43040509 None:intergenic 55.0%
!! CATCGGTGGTGGATGTCGTA+TGG - Chr4:43040432-43040451 None:intergenic 55.0%
!! GGGCATTGCGCTTTTCATCC+GGG + Chr4:43040451-43040470 MsG0480020539.01.T01:intron 55.0%
AACCAATGCCTCCGGGACAC+TGG - Chr4:43037949-43037968 None:intergenic 60.0%
AACCAGTGGTCCGGAGACAC+CGG - Chr4:43037810-43037829 None:intergenic 60.0%
GCAACAGATGGTTGCCGCCA+TGG + Chr4:43041979-43041998 MsG0480020539.01.T01:CDS 60.0%
! AAAGGCGCAATGCCCGTTGG+TGG - Chr4:43040487-43040506 None:intergenic 60.0%
! AACCAGTGTCCCGGAGGCAT+TGG + Chr4:43037944-43037963 MsG0480020539.01.T01:intron 60.0%
! ACACATGGCGGAGCTTAGGG+CGG + Chr4:43041441-43041460 MsG0480020539.01.T01:CDS 60.0%
! CCTGGGAGCGTGCTCTTTGA+AGG - Chr4:43039184-43039203 None:intergenic 60.0%
! CCTTCAAAGAGCACGCTCCC+AGG + Chr4:43039181-43039200 MsG0480020539.01.T01:CDS 60.0%
! CGGGCATTGCGCCTTTCATC+CGG + Chr4:43040491-43040510 MsG0480020539.01.T01:intron 60.0%
! GGGCATTGCGCCTTTCATCC+GGG + Chr4:43040492-43040511 MsG0480020539.01.T01:intron 60.0%
AACCGGTGTCTCCGGACCAC+TGG + Chr4:43037805-43037824 MsG0480020539.01.T01:intron 65.0%
AGATGGTTGCCGCCATGGCC+AGG + Chr4:43041984-43042003 MsG0480020539.01.T01:CDS 65.0%
AGCGCAATGCCCATCGGTGG+TGG - Chr4:43040443-43040462 None:intergenic 65.0%
! ACATGGCGGAGCTTAGGGCG+GGG + Chr4:43041443-43041462 MsG0480020539.01.T01:CDS 65.0%
! CACATGGCGGAGCTTAGGGC+GGG + Chr4:43041442-43041461 MsG0480020539.01.T01:CDS 65.0%
!! GCAAGGGCGCCGCAGTTTAG+AGG - Chr4:43040641-43040660 None:intergenic 65.0%
AACGACAGGCCCTCCGGCGA+TGG - Chr4:43041951-43041970 None:intergenic 70.0%
GCCGGAGGGCCTGTCGTTGA+CGG + Chr4:43041953-43041972 MsG0480020539.01.T01:CDS 70.0%
GCCGTCAACGACAGGCCCTC+CGG - Chr4:43041957-43041976 None:intergenic 70.0%
! GCGGGGCTGCAGGCATCGTT+GGG + Chr4:43041460-43041479 MsG0480020539.01.T01:CDS 70.0%
! GGCGCAATGCCCGTTGGTGG+TGG - Chr4:43040484-43040503 None:intergenic 70.0%
GGAGCTTAGGGCGGGGCTGC+AGG + Chr4:43041450-43041469 MsG0480020539.01.T01:CDS 75.0%
! GGCGGGGCTGCAGGCATCGT+TGG + Chr4:43041459-43041478 MsG0480020539.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr4 gene 43035369 43045234 43035369 ID=MsG0480020539.01;Name=MsG0480020539.01
Chr4 mRNA 43035369 43045234 43035369 ID=MsG0480020539.01.T01;Parent=MsG0480020539.01;Name=MsG0480020539.01.T01;_AED=0.40;_eAED=0.40;_QI=298|0.91|0.92|1|0.5|0.53|13|247|506
Chr4 exon 43035369 43035613 43035369 ID=MsG0480020539.01.T01:exon:5143;Parent=MsG0480020539.01.T01
Chr4 exon 43035772 43035934 43035772 ID=MsG0480020539.01.T01:exon:5144;Parent=MsG0480020539.01.T01
Chr4 exon 43036084 43036172 43036084 ID=MsG0480020539.01.T01:exon:5145;Parent=MsG0480020539.01.T01
Chr4 exon 43036515 43036636 43036515 ID=MsG0480020539.01.T01:exon:5146;Parent=MsG0480020539.01.T01
Chr4 exon 43037264 43037485 43037264 ID=MsG0480020539.01.T01:exon:5147;Parent=MsG0480020539.01.T01
Chr4 exon 43038437 43038481 43038437 ID=MsG0480020539.01.T01:exon:5148;Parent=MsG0480020539.01.T01
Chr4 exon 43038621 43038710 43038621 ID=MsG0480020539.01.T01:exon:5149;Parent=MsG0480020539.01.T01
Chr4 exon 43039125 43039202 43039125 ID=MsG0480020539.01.T01:exon:5150;Parent=MsG0480020539.01.T01
Chr4 exon 43039347 43039386 43039347 ID=MsG0480020539.01.T01:exon:5151;Parent=MsG0480020539.01.T01
Chr4 exon 43041389 43041660 43041389 ID=MsG0480020539.01.T01:exon:5152;Parent=MsG0480020539.01.T01
Chr4 exon 43041815 43042036 43041815 ID=MsG0480020539.01.T01:exon:5153;Parent=MsG0480020539.01.T01
Chr4 exon 43044018 43044160 43044018 ID=MsG0480020539.01.T01:exon:5154;Parent=MsG0480020539.01.T01
Chr4 exon 43044900 43045234 43044900 ID=MsG0480020539.01.T01:exon:5155;Parent=MsG0480020539.01.T01
Chr4 five_prime_UTR 43035369 43035613 43035369 ID=MsG0480020539.01.T01:five_prime_utr;Parent=MsG0480020539.01.T01
Chr4 five_prime_UTR 43035772 43035824 43035772 ID=MsG0480020539.01.T01:five_prime_utr;Parent=MsG0480020539.01.T01
Chr4 CDS 43035825 43035934 43035825 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43036084 43036172 43036084 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43036515 43036636 43036515 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43037264 43037485 43037264 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43038437 43038481 43038437 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43038621 43038710 43038621 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43039125 43039202 43039125 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43039347 43039386 43039347 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43041389 43041660 43041389 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43041815 43042036 43041815 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43044018 43044160 43044018 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 CDS 43044900 43044987 43044900 ID=MsG0480020539.01.T01:cds;Parent=MsG0480020539.01.T01
Chr4 three_prime_UTR 43044988 43045234 43044988 ID=MsG0480020539.01.T01:three_prime_utr;Parent=MsG0480020539.01.T01
Gene Sequence

>MsG0480020539.01.T01

ATGGCTAGCCAAAGAATTGGAGAAATTGGTTTGTCTGAGTCTGGACCTTCAAGTCAACATGTCCCTTATGGAGTTCTTCATGGAATCACTACCTCAACATCACCCTTAATGAATCAAGGGTCTGCTTTTAATTTTGGAGAGCTAGAACAGGCAATTGTTCTTCAAGGAATCAAGATAAGAAATGATGAAGGAAAAGCAACTGCTTTATTTACAAGCAAACCAGCAGCTACACTTGAAATGTTTCCTTCATGGCCAATTAGATTTCAACAAACACCAAGAGTTGTAGCTTCTCTCACTTCTCCATCTTTGACCATTCCTTATGGAGGTTCAAAATCAGGAGGAGAAAGTACTGATTCAGGATCAACAGAGCTACAATTTGAAACAGATTCTCCAATAAGTGCAAAAGCATCTTCTTCAGATCATCATAATCATGCTTTTGATCAGCAGCAGCTTCAACAGCAACAGGAGACAGCAACCGATGATGGCTTAAGAACAGGCACATCAACACAGAATCAATCAAAAGCCAAATCACCTCATGAAAAGAAAAAAGGAGCTGTTTCCACATCAGAAAAGACACTGGATCCAAAGGGAAGAACTTACTGTTTGATTTGTCAACAGACACTGAGACGTTTGGCACAAAACAGAGAAGCTGCAAAGAAAAGCCGTCTAAGGAAAAAGGCTTATGTACAGCAGCTAGAGTCAAGTAGATTAAGGCTATCCAATCTCGAACAAGACCTTCAAAGAGCACGCTCCCAGGGACTATTCTTGGGTTGTGGTGGTGGAAATATAAGCCCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGATGGCTAGAAGAAGATCAACGACACATGGCGGAGCTTAGGGCGGGGCTGCAGGCATCGTTGGGAGATAATGAATTGAGAGTGATCGTGGACGGATATCTTTATCATTACGACGAGCTTTTCCGATTGAAGGAGGTGGCTGTTAAATCAGATGTTTTTCACCTTATTAAAGGCATTTGGGCTTCTCCTGCTGAGAGACCCTTCATTTGGATAGGTGGTTTCAGACCCTCAGAACTCATCACGATGTTGACACAACAATTGGAGCCCCTAGCGCAGCAACAAATAGATGGGATAATGGACCTGAATACTTCATCATTTCAAGCAGAAGAAGCTCTCTCTAAAGGTCATGAACAGCTCCACAATGCTATTGTTGACACCATCGCCGGAGGGCCTGTCGTTGACGGCATGCAACAGATGGTTGCCGCCATGGCCAGGATTTCCAATCTTGAAAAATTTGTTCATGAGGCTGATAATTTGAGGCAACAAACTCTTCACCAACTATGTCGAATATTGACGGTTCGTCAAGCGGCAAGATGTTTCATTGTTATTGGAGAGTATTATGGACGCCTTCGAGCCCTTAGCTCTCTTTGGGCTTCAAGACCACGAGAGAACATGATCAATGATGATAACTCATGCCAAGCAACCACAGAATTGCAAATGGTTCAACCTTCTCATAGTCATTTCTCAAGTTTCTGA

Protein sequence

>MsG0480020539.01.T01

MASQRIGEIGLSESGPSSQHVPYGVLHGITTSTSPLMNQGSAFNFGELEQAIVLQGIKIRNDEGKATALFTSKPAATLEMFPSWPIRFQQTPRVVASLTSPSLTIPYGGSKSGGESTDSGSTELQFETDSPISAKASSSDHHNHAFDQQQLQQQQETATDDGLRTGTSTQNQSKAKSPHEKKKGAVSTSEKTLDPKGRTYCLICQQTLRRLAQNREAAKKSRLRKKAYVQQLESSRLRLSNLEQDLQRARSQGLFLGCGGGNISPGAAMFDMEYARWLEEDQRHMAELRAGLQASLGDNELRVIVDGYLYHYDELFRLKEVAVKSDVFHLIKGIWASPAERPFIWIGGFRPSELITMLTQQLEPLAQQQIDGIMDLNTSSFQAEEALSKGHEQLHNAIVDTIAGGPVVDGMQQMVAAMARISNLEKFVHEADNLRQQTLHQLCRILTVRQAARCFIVIGEYYGRLRALSSLWASRPRENMINDDNSCQATTELQMVQPSHSHFSSF*